Query 028791
Match_columns 203
No_of_seqs 222 out of 1167
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.5 3.8E-15 1.3E-19 104.3 4.8 54 149-202 19-72 (75)
2 1iym_A EL5; ring-H2 finger, ub 99.5 3.3E-15 1.1E-19 98.3 3.6 52 151-202 3-55 (55)
3 2l0b_A E3 ubiquitin-protein li 99.5 1.2E-14 4.2E-19 105.9 6.6 53 150-202 37-89 (91)
4 2kiz_A E3 ubiquitin-protein li 99.5 1.4E-14 4.9E-19 99.6 5.4 53 150-202 11-63 (69)
5 2ep4_A Ring finger protein 24; 99.5 1.2E-14 4.2E-19 101.2 5.0 52 151-202 13-64 (74)
6 2ect_A Ring finger protein 126 99.5 1.9E-14 6.5E-19 101.2 4.3 51 151-201 13-63 (78)
7 2ecl_A Ring-box protein 2; RNF 99.4 6.6E-14 2.2E-18 100.1 4.4 51 151-201 13-75 (81)
8 2ecm_A Ring finger and CHY zin 99.4 9.2E-14 3.2E-18 91.2 4.5 51 151-201 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.4 1.3E-13 4.5E-18 94.0 4.1 52 151-202 13-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.4 1.1E-13 3.7E-18 95.2 3.7 51 151-201 8-62 (71)
11 3dpl_R Ring-box protein 1; ubi 99.4 2.1E-13 7.2E-18 103.0 4.5 60 141-200 25-99 (106)
12 1v87_A Deltex protein 2; ring- 99.4 2.4E-13 8.3E-18 102.0 4.8 50 152-201 24-93 (114)
13 2xeu_A Ring finger protein 4; 99.4 2.4E-13 8.3E-18 91.3 3.6 50 152-201 2-55 (64)
14 2d8t_A Dactylidin, ring finger 99.4 2.2E-13 7.6E-18 94.4 3.1 48 151-201 13-60 (71)
15 2djb_A Polycomb group ring fin 99.3 7.3E-13 2.5E-17 92.0 5.1 48 151-201 13-61 (72)
16 2csy_A Zinc finger protein 183 99.3 7.2E-13 2.5E-17 93.9 4.4 48 151-201 13-60 (81)
17 1chc_A Equine herpes virus-1 r 99.3 5E-13 1.7E-17 91.4 3.4 49 151-201 3-51 (68)
18 4a0k_B E3 ubiquitin-protein li 99.3 1.3E-13 4.3E-18 106.1 0.1 63 139-201 34-111 (117)
19 4ayc_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 104.2 2.9 47 152-201 52-98 (138)
20 2ysl_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 90.5 4.5 49 150-201 17-68 (73)
21 2yur_A Retinoblastoma-binding 99.3 1.6E-12 5.4E-17 91.0 4.6 48 151-201 13-63 (74)
22 2ecy_A TNF receptor-associated 99.3 1.7E-12 5.7E-17 88.6 4.4 48 151-201 13-61 (66)
23 2ct2_A Tripartite motif protei 99.3 2.4E-12 8.2E-17 91.8 5.3 51 151-201 13-67 (88)
24 2ecw_A Tripartite motif-contai 99.3 3.7E-12 1.3E-16 89.8 5.1 48 151-201 17-70 (85)
25 2ysj_A Tripartite motif-contai 99.3 5.3E-12 1.8E-16 85.2 5.1 44 150-196 17-63 (63)
26 1t1h_A Gspef-atpub14, armadill 99.3 3.5E-12 1.2E-16 89.5 4.4 48 151-201 6-54 (78)
27 3lrq_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 95.8 3.0 48 151-201 20-69 (100)
28 2ecn_A Ring finger protein 141 99.3 7.8E-13 2.7E-17 91.0 0.8 47 151-201 13-59 (70)
29 2d8s_A Cellular modulator of i 99.3 2.8E-12 9.7E-17 92.1 3.8 54 148-202 10-70 (80)
30 2y43_A E3 ubiquitin-protein li 99.2 1.7E-12 5.9E-17 95.2 2.4 48 151-201 20-68 (99)
31 2egp_A Tripartite motif-contai 99.2 1.3E-12 4.6E-17 91.4 1.3 49 150-201 9-64 (79)
32 3ztg_A E3 ubiquitin-protein li 99.2 6.5E-12 2.2E-16 90.7 4.8 47 151-200 11-60 (92)
33 2ecv_A Tripartite motif-contai 99.2 4.7E-12 1.6E-16 89.2 3.9 48 151-201 17-70 (85)
34 2ckl_A Polycomb group ring fin 99.2 6.5E-12 2.2E-16 93.6 4.2 48 151-201 13-61 (108)
35 4ap4_A E3 ubiquitin ligase RNF 99.2 6.2E-12 2.1E-16 95.3 3.8 51 151-201 5-59 (133)
36 3fl2_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 96.1 3.5 48 151-201 50-98 (124)
37 2ecj_A Tripartite motif-contai 99.2 1E-11 3.5E-16 82.0 3.3 43 151-196 13-58 (58)
38 1g25_A CDK-activating kinase a 99.1 2.8E-11 9.4E-16 82.2 4.1 50 152-201 2-54 (65)
39 2ckl_B Ubiquitin ligase protei 99.1 1.7E-11 5.8E-16 97.8 3.3 48 151-201 52-101 (165)
40 1jm7_A BRCA1, breast cancer ty 99.1 1.6E-11 5.4E-16 91.3 2.9 48 151-201 19-69 (112)
41 3l11_A E3 ubiquitin-protein li 99.1 6.6E-12 2.2E-16 94.5 0.4 48 151-201 13-61 (115)
42 1z6u_A NP95-like ring finger p 99.1 2.5E-11 8.4E-16 96.4 3.5 47 152-201 77-124 (150)
43 3hct_A TNF receptor-associated 99.1 2.9E-11 1E-15 91.6 3.7 50 149-201 14-64 (118)
44 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.9E-16 91.6 2.4 48 151-201 21-69 (116)
45 2kr4_A Ubiquitin conjugation f 99.1 7.4E-11 2.5E-15 85.1 4.1 48 151-201 12-59 (85)
46 4ap4_A E3 ubiquitin ligase RNF 99.1 8.8E-11 3E-15 88.9 4.2 51 151-201 70-124 (133)
47 2kre_A Ubiquitin conjugation f 99.0 1.1E-10 3.9E-15 86.8 3.9 48 151-201 27-74 (100)
48 2ct0_A Non-SMC element 1 homol 99.0 1.4E-10 4.7E-15 82.4 3.2 51 149-201 11-63 (74)
49 1wgm_A Ubiquitin conjugation f 99.0 2.1E-10 7.1E-15 85.1 4.2 48 151-201 20-68 (98)
50 2vje_A E3 ubiquitin-protein li 99.0 1.5E-10 5.2E-15 79.2 3.1 48 151-201 6-56 (64)
51 1bor_A Transcription factor PM 99.0 6.1E-11 2.1E-15 78.9 0.8 45 151-201 4-48 (56)
52 3knv_A TNF receptor-associated 99.0 9.5E-11 3.2E-15 92.1 2.0 49 149-200 27-76 (141)
53 2vje_B MDM4 protein; proto-onc 98.9 2.9E-10 1E-14 77.5 2.8 48 151-201 5-55 (63)
54 1e4u_A Transcriptional repress 98.9 4.5E-10 1.6E-14 80.0 3.8 52 150-201 8-61 (78)
55 1jm7_B BARD1, BRCA1-associated 98.9 9E-11 3.1E-15 88.8 -0.1 46 151-201 20-66 (117)
56 2y1n_A E3 ubiquitin-protein li 98.9 5.4E-10 1.8E-14 101.3 4.5 48 151-201 330-378 (389)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.7E-10 9.1E-15 79.9 1.4 44 151-201 22-66 (74)
58 2c2l_A CHIP, carboxy terminus 98.9 6.9E-10 2.4E-14 93.6 3.8 48 151-201 206-254 (281)
59 3hcs_A TNF receptor-associated 98.9 8.5E-10 2.9E-14 88.2 3.6 51 148-201 13-64 (170)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.5E-09 5.1E-14 79.4 3.8 46 151-199 5-59 (94)
61 2ecg_A Baculoviral IAP repeat- 98.7 2.1E-09 7.3E-14 75.2 1.7 45 151-202 23-68 (75)
62 2f42_A STIP1 homology and U-bo 98.7 8.1E-09 2.8E-13 84.6 4.4 49 150-201 103-152 (179)
63 2ea5_A Cell growth regulator w 98.7 9.8E-09 3.4E-13 71.0 3.6 44 151-201 13-57 (68)
64 3k1l_B Fancl; UBC, ring, RWD, 98.7 3.6E-09 1.2E-13 94.7 0.7 51 151-201 306-372 (381)
65 1wim_A KIAA0161 protein; ring 98.6 1.3E-08 4.4E-13 74.0 3.1 49 151-199 3-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.6 5.7E-09 1.9E-13 74.2 0.8 43 152-201 17-60 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.7E-08 9.4E-13 67.5 3.7 50 150-202 3-59 (60)
68 3t6p_A Baculoviral IAP repeat- 98.5 2.8E-08 9.5E-13 88.8 0.8 44 151-201 293-337 (345)
69 2bay_A PRE-mRNA splicing facto 98.4 1E-07 3.4E-12 64.8 2.4 46 153-201 3-49 (61)
70 3htk_C E3 SUMO-protein ligase 98.4 8.4E-08 2.9E-12 82.8 2.5 48 151-201 179-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.1 2.1E-06 7E-11 64.0 3.8 45 155-201 3-48 (101)
72 3nw0_A Non-structural maintena 97.6 3.4E-05 1.2E-09 65.4 4.0 48 151-201 178-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.015 5.1E-07 41.8 2.8 34 152-185 2-35 (101)
74 2ko5_A Ring finger protein Z; 93.0 0.033 1.1E-06 40.9 1.4 47 151-202 26-73 (99)
75 2lri_C Autoimmune regulator; Z 92.1 0.093 3.2E-06 35.7 2.7 47 151-200 10-60 (66)
76 1wil_A KIAA1045 protein; ring 85.6 0.54 1.8E-05 33.8 2.8 32 151-186 13-47 (89)
77 3m62_A Ubiquitin conjugation f 85.2 0.71 2.4E-05 46.1 4.4 50 149-201 887-937 (968)
78 2l5u_A Chromodomain-helicase-D 81.6 0.52 1.8E-05 31.2 1.3 45 150-198 8-57 (61)
79 1f62_A Transcription factor WS 80.0 0.65 2.2E-05 29.2 1.3 44 155-198 2-49 (51)
80 1mm2_A MI2-beta; PHD, zinc fin 78.3 0.33 1.1E-05 32.1 -0.6 48 150-200 6-57 (61)
81 2k16_A Transcription initiatio 77.1 0.89 3.1E-05 30.9 1.4 49 150-199 15-68 (75)
82 2lv9_A Histone-lysine N-methyl 76.4 0.69 2.4E-05 33.5 0.7 45 153-198 28-75 (98)
83 2yql_A PHD finger protein 21A; 75.6 0.19 6.4E-06 32.7 -2.4 47 149-198 5-55 (56)
84 1we9_A PHD finger family prote 74.4 1.6 5.4E-05 28.7 2.0 49 150-198 3-57 (64)
85 2lbm_A Transcriptional regulat 72.3 3.5 0.00012 32.0 3.8 47 149-198 59-116 (142)
86 1fp0_A KAP-1 corepressor; PHD 71.7 0.95 3.3E-05 32.5 0.4 48 149-199 21-72 (88)
87 2ysm_A Myeloid/lymphoid or mix 71.0 0.99 3.4E-05 32.9 0.4 37 151-187 5-41 (111)
88 1wep_A PHF8; structural genomi 70.9 3 0.0001 28.7 2.8 46 153-199 12-63 (79)
89 2vpb_A Hpygo1, pygopus homolog 70.0 3.3 0.00011 27.7 2.8 34 151-184 6-41 (65)
90 2kgg_A Histone demethylase jar 68.8 3.4 0.00012 26.1 2.6 43 155-197 4-52 (52)
91 1z2q_A LM5-1; membrane protein 65.0 4.2 0.00015 28.3 2.7 37 149-185 17-54 (84)
92 1xwh_A Autoimmune regulator; P 64.9 0.6 2.1E-05 31.3 -1.8 45 151-198 6-54 (66)
93 3v43_A Histone acetyltransfera 64.9 7.9 0.00027 28.2 4.3 33 152-184 4-42 (112)
94 1joc_A EEA1, early endosomal a 64.8 3.4 0.00011 31.1 2.2 36 150-185 66-102 (125)
95 3v43_A Histone acetyltransfera 64.6 1.6 5.5E-05 32.1 0.4 45 154-198 62-111 (112)
96 2yt5_A Metal-response element- 64.2 3 0.0001 27.4 1.7 50 150-199 3-61 (66)
97 2puy_A PHD finger protein 21A; 63.3 0.71 2.4E-05 30.2 -1.6 45 151-198 3-51 (60)
98 2yw8_A RUN and FYVE domain-con 62.7 3.9 0.00013 28.3 2.1 36 150-185 16-52 (82)
99 1wfk_A Zinc finger, FYVE domai 62.4 4.6 0.00016 28.5 2.5 35 151-185 7-42 (88)
100 3i2d_A E3 SUMO-protein ligase 62.3 6.2 0.00021 35.3 3.8 47 153-201 249-299 (371)
101 3t7l_A Zinc finger FYVE domain 62.2 4.8 0.00016 28.4 2.6 36 151-186 18-54 (90)
102 2e6r_A Jumonji/ARID domain-con 61.4 0.6 2E-05 33.5 -2.5 47 151-198 14-65 (92)
103 2cs3_A Protein C14ORF4, MY039 61.2 4.3 0.00015 28.9 2.0 38 151-189 13-52 (93)
104 1x4u_A Zinc finger, FYVE domai 60.8 4.7 0.00016 28.0 2.3 37 149-185 10-47 (84)
105 1weo_A Cellulose synthase, cat 60.8 11 0.00036 27.3 4.1 49 152-200 15-68 (93)
106 4fo9_A E3 SUMO-protein ligase 60.5 7 0.00024 34.8 3.8 47 153-201 215-265 (360)
107 3ql9_A Transcriptional regulat 58.0 8.3 0.00028 29.4 3.4 47 148-198 52-110 (129)
108 2xb1_A Pygopus homolog 2, B-ce 53.1 6.6 0.00022 28.6 2.0 47 153-199 3-61 (105)
109 3mjh_B Early endosome antigen 52.9 4.1 0.00014 24.1 0.7 17 151-167 3-19 (34)
110 1vfy_A Phosphatidylinositol-3- 52.1 7.5 0.00026 26.2 2.1 31 154-184 12-43 (73)
111 4gne_A Histone-lysine N-methyl 51.7 6.7 0.00023 28.9 1.9 45 147-197 9-60 (107)
112 1dvp_A HRS, hepatocyte growth 50.7 6 0.00021 32.1 1.6 33 153-185 161-194 (220)
113 3shb_A E3 ubiquitin-protein li 50.4 1.8 6E-05 30.1 -1.4 43 155-198 28-76 (77)
114 1weu_A Inhibitor of growth fam 50.1 14 0.00046 26.4 3.2 42 151-199 34-85 (91)
115 2ku3_A Bromodomain-containing 50.0 15 0.00053 24.8 3.4 50 149-198 12-65 (71)
116 1zbd_B Rabphilin-3A; G protein 47.6 8.7 0.0003 29.3 2.0 34 151-184 53-88 (134)
117 2dar_A PDZ and LIM domain prot 47.5 18 0.00061 24.7 3.5 27 153-182 25-51 (90)
118 2e6s_A E3 ubiquitin-protein li 47.4 2.9 9.8E-05 29.0 -0.7 44 154-198 27-76 (77)
119 3zyq_A Hepatocyte growth facto 47.2 7.2 0.00025 32.0 1.6 33 153-185 164-197 (226)
120 2l43_A N-teminal domain from h 45.9 12 0.00043 26.2 2.5 48 151-198 23-74 (88)
121 4g9i_A Hydrogenase maturation 43.8 81 0.0028 30.5 8.6 48 151-198 104-186 (772)
122 1wen_A Inhibitor of growth fam 43.4 8.1 0.00028 26.2 1.1 44 151-199 14-65 (71)
123 2kwj_A Zinc finger protein DPF 42.8 13 0.00043 27.2 2.2 33 154-186 2-41 (114)
124 1y02_A CARP2, FYVE-ring finger 42.5 9.1 0.00031 28.7 1.4 46 151-196 17-63 (120)
125 3asl_A E3 ubiquitin-protein li 41.2 4.1 0.00014 27.5 -0.7 44 155-199 20-69 (70)
126 2cu8_A Cysteine-rich protein 2 40.8 21 0.00072 23.4 2.9 11 155-165 11-21 (76)
127 1iml_A CRIP, cysteine rich int 40.4 10 0.00035 25.0 1.2 46 151-200 25-71 (76)
128 3mpx_A FYVE, rhogef and PH dom 40.1 6 0.00021 34.7 0.0 49 151-199 373-429 (434)
129 1x62_A C-terminal LIM domain p 39.0 19 0.00065 23.9 2.5 12 175-186 61-72 (79)
130 2dj7_A Actin-binding LIM prote 38.5 19 0.00066 24.1 2.5 12 155-166 17-28 (80)
131 1z60_A TFIIH basal transcripti 35.9 12 0.0004 24.8 0.9 42 154-196 16-58 (59)
132 3ask_A E3 ubiquitin-protein li 35.6 5.8 0.0002 33.1 -0.8 46 154-199 175-225 (226)
133 2d8x_A Protein pinch; LIM doma 35.6 19 0.00066 23.1 2.0 34 152-187 30-63 (70)
134 1g47_A Pinch protein; LIM doma 35.5 33 0.0011 22.2 3.3 11 154-164 12-22 (77)
135 2co8_A NEDD9 interacting prote 35.5 26 0.00089 23.5 2.7 27 154-182 16-42 (82)
136 1x64_A Alpha-actinin-2 associa 34.9 29 0.00099 23.5 2.9 11 154-164 26-36 (89)
137 1x4k_A Skeletal muscle LIM-pro 34.5 32 0.0011 22.0 3.0 31 153-185 33-63 (72)
138 2d8z_A Four and A half LIM dom 34.4 32 0.0011 21.9 2.9 33 152-186 30-62 (70)
139 1wee_A PHD finger family prote 34.1 19 0.00065 24.0 1.8 47 151-198 14-65 (72)
140 1nyp_A Pinch protein; LIM doma 33.7 26 0.00088 22.2 2.4 10 155-164 7-16 (66)
141 2d8v_A Zinc finger FYVE domain 33.0 22 0.00076 24.1 1.9 33 150-186 5-38 (67)
142 2xjy_A Rhombotin-2; oncoprotei 32.2 29 0.001 25.0 2.7 49 152-200 28-76 (131)
143 1wem_A Death associated transc 31.4 36 0.0012 22.7 2.9 44 153-198 16-69 (76)
144 2zet_C Melanophilin; complex, 31.1 22 0.00076 27.6 1.9 32 152-183 67-100 (153)
145 1zfo_A LAsp-1; LIM domain, zin 30.5 13 0.00043 21.0 0.3 28 154-183 4-31 (31)
146 1x63_A Skeletal muscle LIM-pro 30.5 41 0.0014 22.1 3.1 11 155-165 17-27 (82)
147 3a1b_A DNA (cytosine-5)-methyl 30.1 37 0.0013 26.7 3.1 36 148-187 74-112 (159)
148 1wyh_A SLIM 2, skeletal muscle 30.0 43 0.0015 21.3 3.0 32 152-185 32-63 (72)
149 1wev_A Riken cDNA 1110020M19; 29.1 9 0.00031 26.9 -0.6 47 152-198 15-71 (88)
150 2cor_A Pinch protein; LIM doma 28.5 33 0.0011 22.7 2.3 29 152-183 40-68 (79)
151 1m3v_A FLIN4, fusion of the LI 27.6 38 0.0013 24.4 2.7 49 152-201 31-80 (122)
152 2jmo_A Parkin; IBR, E3 ligase, 26.7 4.8 0.00017 27.7 -2.4 14 173-186 55-68 (80)
153 2d8y_A Eplin protein; LIM doma 26.4 50 0.0017 22.3 3.0 34 152-187 41-74 (91)
154 1x68_A FHL5 protein; four-and- 26.4 37 0.0013 22.1 2.2 11 153-163 35-45 (76)
155 1wig_A KIAA1808 protein; LIM d 26.3 32 0.0011 22.5 1.9 35 152-187 30-64 (73)
156 3f6q_B LIM and senescent cell 26.1 36 0.0012 21.5 2.1 39 153-200 11-49 (72)
157 2cur_A Skeletal muscle LIM-pro 25.9 29 0.00099 22.1 1.5 34 152-187 30-63 (69)
158 1wew_A DNA-binding family prot 25.1 55 0.0019 22.0 3.0 45 152-198 15-71 (78)
159 1x4l_A Skeletal muscle LIM-pro 24.8 45 0.0015 21.4 2.3 30 153-184 35-64 (72)
160 3c6w_A P28ING5, inhibitor of g 24.5 8.5 0.00029 25.1 -1.4 42 152-198 8-57 (59)
161 2gmg_A Hypothetical protein PF 24.0 13 0.00044 27.5 -0.6 23 172-199 71-93 (105)
162 3fyb_A Protein of unknown func 23.9 31 0.0011 25.3 1.5 11 178-188 42-52 (104)
163 2o35_A Hypothetical protein DU 23.8 31 0.0011 25.3 1.5 11 178-188 43-53 (105)
164 1v6g_A Actin binding LIM prote 23.5 38 0.0013 22.3 1.8 25 155-182 17-41 (81)
165 2vnf_A ING 4, P29ING4, inhibit 22.5 9.3 0.00032 24.9 -1.5 40 152-198 9-58 (60)
166 1x6a_A LIMK-2, LIM domain kina 21.6 37 0.0013 22.3 1.4 36 152-187 40-75 (81)
167 2l3k_A Rhombotin-2, linker, LI 21.0 36 0.0012 24.6 1.4 38 151-189 34-71 (123)
168 2pv0_B DNA (cytosine-5)-methyl 20.7 61 0.0021 29.0 3.0 36 149-187 89-126 (386)
169 3kqi_A GRC5, PHD finger protei 20.7 84 0.0029 20.9 3.1 46 153-198 9-60 (75)
170 2cuq_A Four and A half LIM dom 20.1 47 0.0016 21.7 1.7 33 152-186 40-72 (80)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=104.32 Aligned_cols=54 Identities=37% Similarity=0.909 Sum_probs=48.9
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
...+...|+||++.|..++.+..+||+|.||..||..|+..+..||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345678999999999999888999999999999999999999999999998864
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=3.3e-15 Score=98.32 Aligned_cols=52 Identities=38% Similarity=0.975 Sum_probs=47.4
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
+++.+|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||.++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 45679999999999988888898 99999999999999999999999998864
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=105.89 Aligned_cols=53 Identities=32% Similarity=0.743 Sum_probs=48.2
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
..++..|+||++.|..++.+..+||+|.||..||..|+..+.+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35678899999999998888899999999999999999999999999998864
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=99.57 Aligned_cols=53 Identities=36% Similarity=0.873 Sum_probs=47.5
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
......|+||++.|..++.++.++|+|.||..||..|+..+.+||+||..|..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 34577899999999888888899999999999999999999999999998753
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=101.22 Aligned_cols=52 Identities=35% Similarity=0.979 Sum_probs=47.4
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
.....|+||++.|..++.+..++|+|.||..||..|+..+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567999999999999888889999999999999999999999999998753
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.9e-14 Score=101.20 Aligned_cols=51 Identities=37% Similarity=1.024 Sum_probs=47.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
....+|+||++.|..++.+..++|+|.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 457899999999999888888999999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.6e-14 Score=100.13 Aligned_cols=51 Identities=24% Similarity=0.724 Sum_probs=41.9
Q ss_pred Ccccccccccccccc-----------CCceEEec-CCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQE-----------EQPVTRLP-CSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~-----------~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.++..|+||++.|.. ++.++.++ |+|.||..||.+|+..+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 456778888888854 34455665 9999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=9.2e-14 Score=91.17 Aligned_cols=51 Identities=31% Similarity=0.714 Sum_probs=44.2
Q ss_pred CccccccccccccccC-CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE-QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++.++|+|.||..||..|+..+..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999998654 34678899999999999999998899999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=93.98 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=45.1
Q ss_pred CccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
.+...|+||++.|..+ +.++.++|+|.||..||..|+..+..||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4578999999998864 345778999999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.40 E-value=1.1e-13 Score=95.19 Aligned_cols=51 Identities=27% Similarity=0.672 Sum_probs=45.0
Q ss_pred CccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+++..|+||++.|..+ +.++.++|+|.||..||..|+..+..||+||.++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 4678999999998764 55678899999999999999999999999999875
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.39 E-value=2.1e-13 Score=102.95 Aligned_cols=60 Identities=22% Similarity=0.481 Sum_probs=48.0
Q ss_pred cccccccCCCCccccccccccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 141 LRHLKLRGSKSNTKICSVCLEEFQEEQ---------------PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~~~C~ICle~~~~~~---------------~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
+..+.....+.++..|+||++.|..+. .++.++|+|.||..||.+|+..+.+||+||.++
T Consensus 25 ~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 25 WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred EEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 344444444456789999999988651 367789999999999999999999999999975
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=2.4e-13 Score=101.97 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=41.2
Q ss_pred ccccccccccccccCC---------------ceEEecCCCcccHHhHHHHH-----hcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQ---------------PVTRLPCSHKYHSDCVLPWL-----AAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~---------------~~~~LpC~H~Fh~~CI~~Wl-----~~~~~CP~CR~~v~ 201 (203)
.+..|+||++.|..+. .+..++|+|.||..||..|+ ..+.+||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4569999999997653 33478899999999999999 44678999998764
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=91.33 Aligned_cols=50 Identities=24% Similarity=0.646 Sum_probs=43.9
Q ss_pred ccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+...|+||++.|..+ +.++.++|+|.||..||..|+..+..||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467899999998764 45578899999999999999999999999999875
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=94.41 Aligned_cols=48 Identities=25% Similarity=0.534 Sum_probs=43.3
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.+..+ +.++|+|.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4567899999999877 78899999999999999998899999999874
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.3e-13 Score=92.00 Aligned_cols=48 Identities=21% Similarity=0.590 Sum_probs=43.0
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.+ +|+|.||..||..|+..+..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 4578999999999887 565 99999999999999998999999999874
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=93.90 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=43.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.....|+||++.|..+ +.++|+|.||..||..|+.....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567999999999887 77999999999999999998999999999863
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.33 E-value=5e-13 Score=91.35 Aligned_cols=49 Identities=31% Similarity=0.864 Sum_probs=43.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+....|+||++.+..+ .+.++|+|.||..|+..|+..+..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567899999998754 477899999999999999999999999999875
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.3e-13 Score=106.09 Aligned_cols=63 Identities=21% Similarity=0.448 Sum_probs=7.4
Q ss_pred cccccccccCCCCccccccccccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 139 SHLRHLKLRGSKSNTKICSVCLEEFQEEQ---------------PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~~~C~ICle~~~~~~---------------~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
..+..+.....+..++.|+||++.|..+. .++.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 34 kkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 34 KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp EEEEEEEEEEECCCC---------------------------------------------------------------
T ss_pred EEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 33344444444556789999999997631 2334689999999999999999999999999853
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.8e-13 Score=104.24 Aligned_cols=47 Identities=34% Similarity=0.828 Sum_probs=42.9
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
++..|+||++.|..+ +.+||||.||..||..|+..+..||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999887 78999999999999999999999999999874
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=90.47 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=42.5
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA---AHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~---~~~~CP~CR~~v~ 201 (203)
..+...|+||++.|..+ +.++|+|.||..||..|+. ....||+||.++.
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34678999999999876 7789999999999999996 4568999999875
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=90.96 Aligned_cols=48 Identities=21% Similarity=0.712 Sum_probs=42.5
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAH--PQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++ |+|.||..||..|+..+ ..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4678999999999988 7899 99999999999999765 68999999753
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=88.60 Aligned_cols=48 Identities=19% Similarity=0.613 Sum_probs=42.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHH-hcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL-AAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.+..+ +.++|||.||..||..|+ ..+..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4578999999999888 568999999999999999 45678999999875
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=91.77 Aligned_cols=51 Identities=31% Similarity=0.716 Sum_probs=43.7
Q ss_pred CccccccccccccccCCc-eEEecCCCcccHHhHHHHHhcC---CCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQP-VTRLPCSHKYHSDCVLPWLAAH---PQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v~ 201 (203)
.+...|+||++.|...+. .+.++|||.||..||..|+... ..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 457899999999988543 4788999999999999999775 78999999764
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=3.7e-12 Score=89.76 Aligned_cols=48 Identities=27% Similarity=0.693 Sum_probs=42.8
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA------HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|+|.||..||..|+.. ...||+||.++.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4577999999999888 68999999999999999977 678999999874
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=85.21 Aligned_cols=44 Identities=25% Similarity=0.723 Sum_probs=38.8
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA---AHPQCPYC 196 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~---~~~~CP~C 196 (203)
..+...|+||++.|..+ +.++|||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678999999999987 7789999999999999997 45689998
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=3.5e-12 Score=89.46 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=43.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|||.||..||..|+.. +..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4578999999999988 77899999999999999986 778999999874
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=95.84 Aligned_cols=48 Identities=29% Similarity=0.746 Sum_probs=42.7
Q ss_pred CccccccccccccccCCceEE-ecCCCcccHHhHHHHHhcC-CCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLAAH-PQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +. ++|||.||..||..|+... ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4578999999999877 66 8999999999999999877 69999999874
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.8e-13 Score=91.03 Aligned_cols=47 Identities=28% Similarity=0.855 Sum_probs=42.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.+.. +.++|+|.||..||..|+..+..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 457899999999876 67899999999999999999999999998775
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-12 Score=92.13 Aligned_cols=54 Identities=28% Similarity=0.701 Sum_probs=44.5
Q ss_pred CCCCccccccccccccccCCceEEecCC-----CcccHHhHHHHHhcC--CCCCCcCcCccC
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTRLPCS-----HKYHSDCVLPWLAAH--PQCPYCRRPALV 202 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~LpC~-----H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~ 202 (203)
....+...|.||+++|..++.+ ++||. |.||..||..|+..+ .+||+||..+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3345677999999999877766 58996 999999999999765 489999998753
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=95.25 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=42.7
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4568999999999887 666 89999999999999998899999998774
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=91.43 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=42.7
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhc-------CCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-------HPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-------~~~CP~CR~~v~ 201 (203)
..+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||.++.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34678999999999887 66899999999999999976 568999999874
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=6.5e-12 Score=90.70 Aligned_cols=47 Identities=21% Similarity=0.714 Sum_probs=41.9
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAH--PQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v 200 (203)
.+...|+||++.|..+ +.++ |||.||..||..|+... ..||+||.++
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 5678999999999988 8899 99999999999999643 5899999986
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=89.22 Aligned_cols=48 Identities=25% Similarity=0.639 Sum_probs=42.6
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA------HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|+|.||..|+..|+.. ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4578999999999887 67899999999999999976 779999998875
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=6.5e-12 Score=93.61 Aligned_cols=48 Identities=23% Similarity=0.661 Sum_probs=43.1
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4578999999999877 666 99999999999999998899999998875
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=6.2e-12 Score=95.34 Aligned_cols=51 Identities=27% Similarity=0.672 Sum_probs=45.0
Q ss_pred CccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++.++|||.||..||..|+..+..||+||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4578999999999765 45578999999999999999999999999999875
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.20 E-value=5.8e-12 Score=96.06 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=42.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP-QCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|||.||..||..|+.... .||+||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3567899999999987 7889999999999999997544 8999999874
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=81.98 Aligned_cols=43 Identities=33% Similarity=0.846 Sum_probs=37.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHH---hcCCCCCCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL---AAHPQCPYC 196 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl---~~~~~CP~C 196 (203)
.+...|+||++.+..+ +.++|+|.||..||..|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4577999999999887 668999999999999995 456789998
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.8e-11 Score=82.22 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=40.7
Q ss_pred cccccccccc-ccccCCce-EEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 152 NTKICSVCLE-EFQEEQPV-TRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle-~~~~~~~~-~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
++..|+||++ .|..+... +.++|||.||..||..|+.. ...||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3568999999 78777533 45799999999999999754 467999999874
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=1.7e-11 Score=97.79 Aligned_cols=48 Identities=25% Similarity=0.822 Sum_probs=41.9
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.+ +|||.||..||..|+.. +..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567999999999876 555 99999999999999986 778999999873
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.6e-11 Score=91.30 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=41.6
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC---CCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP---QCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~---~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|||.||..||..|+.... .||+||.++.
T Consensus 19 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 19 QKILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred cCCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 3467899999999887 6689999999999999997654 8999999875
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=6.6e-12 Score=94.47 Aligned_cols=48 Identities=29% Similarity=0.704 Sum_probs=42.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
.++..|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4578999999999988 78899999999999999965 668999999864
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=96.37 Aligned_cols=47 Identities=26% Similarity=0.544 Sum_probs=41.9
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP-QCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~ 201 (203)
+...|+||++.|..+ +.++|+|.||..||..|+.... .||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 467899999999888 7799999999999999997654 8999999875
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=2.9e-11 Score=91.60 Aligned_cols=50 Identities=22% Similarity=0.617 Sum_probs=43.6
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP-QCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~ 201 (203)
...+...|+||++.|..+ +.++|||.||..||..|+.... .||+||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 345678999999999887 7789999999999999997665 9999998874
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=2.3e-11 Score=91.57 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=42.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 3467899999999887 77999999999999999976 679999999864
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.07 E-value=7.4e-11 Score=85.07 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=44.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+.+.|+||++.|..+ +.++|||+|+..||..|+..+.+||+|+.++.
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 4578999999999999 88999999999999999998899999998764
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=8.8e-11 Score=88.88 Aligned_cols=51 Identities=27% Similarity=0.672 Sum_probs=44.3
Q ss_pred CccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
++...|+||++.|..+ ...+.++|||.||..||.+|+..+.+||+||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 5678899999998763 34477899999999999999999999999999875
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.04 E-value=1.1e-10 Score=86.79 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=44.4
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+.+.|+||++.|.++ +.++|||+||..||..|+..+.+||+|+.++.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 4678999999999999 88999999999999999998899999998864
No 48
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=82.38 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=42.1
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC--CCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH--PQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~ 201 (203)
..+...+|+||.+.|..++ .-..|+|.||..||..|++.+ .+||+||.++.
T Consensus 11 y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456789999999998763 223699999999999999877 79999998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.01 E-value=2.1e-10 Score=85.07 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=44.2
Q ss_pred CccccccccccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCS-HKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+.+.|+||++.|.++ +.++|| |+||..||..|+..+.+||+|+.++.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 4578999999999999 889999 99999999999988889999998874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.00 E-value=1.5e-10 Score=79.20 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=41.2
Q ss_pred CccccccccccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL--PCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.++..|.||++.+.+. +.+ ||||. ||..|+..|...+..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3567899999987665 555 99999 899999999998899999999875
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=6.1e-11 Score=78.88 Aligned_cols=45 Identities=31% Similarity=0.560 Sum_probs=39.3
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.++|+|.||..||..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4577899999999988 77999999999999873 668999999875
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.99 E-value=9.5e-11 Score=92.14 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=42.8
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP-QCPYCRRPA 200 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v 200 (203)
...+...|+||++.|..+ +.++|||.||..||..|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345688999999999988 7789999999999999997654 899999865
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.94 E-value=2.9e-10 Score=77.52 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=40.9
Q ss_pred CccccccccccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL--PCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+....|.||++.+.+. ..+ ||||. ||..|+..|...+..||+||.+|.
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4567899999986655 455 99998 999999999988889999999874
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=4.5e-10 Score=80.05 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=39.8
Q ss_pred CCccccccccccccccCCceE-EecCCCcccHHhHHHHHh-cCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVT-RLPCSHKYHSDCVLPWLA-AHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~-~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~ 201 (203)
..++..|+||++.+...+... .++|||.||..|+..++. ....||.||.++.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 356789999999886543322 234999999999999874 4568999999774
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=9e-11 Score=88.75 Aligned_cols=46 Identities=33% Similarity=0.697 Sum_probs=41.0
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4578999999999888 677 8999999999999987 78999998763
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=5.4e-10 Score=101.31 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=42.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-AHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~ 201 (203)
.....|+||++.+..+ +.+||||.||..|+..|+. ....||+||.++.
T Consensus 330 ~~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 330 STFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TSSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3457999999998776 8899999999999999998 6789999999764
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.7e-10 Score=79.87 Aligned_cols=44 Identities=23% Similarity=0.629 Sum_probs=38.8
Q ss_pred CccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|+||++.+..+ +.+||||. ||..|+..| ..||+||.++.
T Consensus 22 ~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3567899999998876 78999999 999999998 78999999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=6.9e-10 Score=93.60 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=42.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH-PQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~ 201 (203)
...+.|+||++.|..| +++||||+||..||..|+..+ .+||+|+.++.
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 4578999999999999 889999999999999999764 45999999874
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=8.5e-10 Score=88.16 Aligned_cols=51 Identities=22% Similarity=0.598 Sum_probs=44.0
Q ss_pred CCCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcCcCcc
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH-PQCPYCRRPAL 201 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~ 201 (203)
....+...|+||++.|..+ +.++|||.||..||..|+... ..||+||.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 3446788999999999988 778999999999999999654 49999998864
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=79.43 Aligned_cols=46 Identities=24% Similarity=0.636 Sum_probs=40.0
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHHhcC------CCCCC--cCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAH------PQCPY--CRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~------~~CP~--CR~~ 199 (203)
...+.|+||++.|.++ +.++ |||+||..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578999999999998 8886 99999999999999653 48999 9854
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.1e-09 Score=75.19 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=37.6
Q ss_pred CccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
.+...|+||++.+..+ +.+||||. ||..|+.. ...||+||.++..
T Consensus 23 ~~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3467899999998876 77899999 99999964 4789999998753
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=8.1e-09 Score=84.56 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH-PQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~ 201 (203)
....+.|+||++.|..| +++||||+||..||..|+..+ .+||+|+.++.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 35678999999999998 889999999999999999764 46999998764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.8e-09 Score=71.05 Aligned_cols=44 Identities=36% Similarity=0.691 Sum_probs=37.5
Q ss_pred CccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+...|.||++.+... +.+||+|. ||..|+.. ...||+||.+|.
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 4567899999987765 88999999 99999983 478999999875
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.65 E-value=3.6e-09 Score=94.65 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=39.7
Q ss_pred CccccccccccccccCCceE-----EecCCCcccHHhHHHHHhcC-----------CCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVT-----RLPCSHKYHSDCVLPWLAAH-----------PQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~-----~LpC~H~Fh~~CI~~Wl~~~-----------~~CP~CR~~v~ 201 (203)
+...+|+||++.+.....+. ..+|+|.||..|+.+|+... +.||+||.+|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 46779999999988732221 24699999999999999542 46999999874
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=1.3e-08 Score=73.96 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=39.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc--------CCCCCC--cCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA--------HPQCPY--CRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~--------~~~CP~--CR~~ 199 (203)
++...|+||++++..++.+...+|+|.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356789999999887754444579999999999999843 237999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=5.7e-09 Score=74.23 Aligned_cols=43 Identities=33% Similarity=0.706 Sum_probs=37.0
Q ss_pred ccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+...|.||++.+... +.+||||. ||..|+..| ..||+||.++.
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 456899999987766 88999999 999999876 38999999874
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.60 E-value=2.7e-08 Score=67.47 Aligned_cols=50 Identities=22% Similarity=0.570 Sum_probs=38.7
Q ss_pred CCccccccccccccccCCceEEecCC--C---cccHHhHHHHHhc--CCCCCCcCcCccC
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCS--H---KYHSDCVLPWLAA--HPQCPYCRRPALV 202 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~--H---~Fh~~CI~~Wl~~--~~~CP~CR~~v~~ 202 (203)
.++...|.||+++.. +.+ .+||. + .||..|+..|+.. +.+||+|+.++.+
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 346778999999843 334 58964 4 8999999999954 6789999998754
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=2.8e-08 Score=88.76 Aligned_cols=44 Identities=25% Similarity=0.685 Sum_probs=38.9
Q ss_pred CccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.++..|+||++.+..+ +.+||||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 3567999999998877 88899999 999999988 78999999874
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=1e-07 Score=64.76 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=40.9
Q ss_pred cccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+.|+||++.+.++ +.+ +|||.|...||..|+..+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 46899999999988 777 89999999999999988889999998764
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.4e-08 Score=82.85 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=40.8
Q ss_pred CccccccccccccccCCceEE-ecCCCcccHHhHHHHHhcC--CCCCC--cCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLAAH--PQCPY--CRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~--~~CP~--CR~~v~ 201 (203)
.....|+||++.|..| +. +.|||+||..||..|+..+ ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4678999999999988 55 4899999999999999754 47999 998653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.09 E-value=2.1e-06 Score=64.03 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=36.5
Q ss_pred cccccccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcCcCcc
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-AHPQCPYCRRPAL 201 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~ 201 (203)
.|.+|--.|.. ..+.+||+|.||++|+..|.+ ....||.|+.+|.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 57788766554 357899999999999999984 5679999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.62 E-value=3.4e-05 Score=65.42 Aligned_cols=48 Identities=23% Similarity=0.602 Sum_probs=39.4
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHHhcCC--CCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAHP--QCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~--~CP~CR~~v~ 201 (203)
+....|.||.+.+..+ ..-+ |+|.||..|+..|++.+. .||.|+.+.+
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3578899999998877 4444 999999999999997654 8999988643
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.92 E-value=0.015 Score=41.82 Aligned_cols=34 Identities=18% Similarity=0.547 Sum_probs=25.7
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLP 185 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~ 185 (203)
++..|.||.+.+..+-...-++|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 3568999998754332233388999999999998
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.96 E-value=0.033 Score=40.89 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=38.1
Q ss_pred CccccccccccccccCCceEEecC-CCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPC-SHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
-+-..|..|+-... ..+.| .|.+|..|+.-.+.....||+|..+++.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 35679999996544 13345 8999999999999999999999998864
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.06 E-value=0.093 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=32.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC----CCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP----QCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CP~CR~~v 200 (203)
.....|.||.+. ++.+.--.|...||..|+.+.+...+ .||.|....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999852 33222233899999999998875443 799997643
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.59 E-value=0.54 Score=33.79 Aligned_cols=32 Identities=28% Similarity=0.808 Sum_probs=23.7
Q ss_pred CccccccccccccccCCceEEec---CCCcccHHhHHHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP---CSHKYHSDCVLPW 186 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp---C~H~Fh~~CI~~W 186 (203)
..+..|.||-- +... ..+| |+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 46778999863 3344 3455 7999999999996
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.19 E-value=0.71 Score=46.08 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCCccccccccccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCS-HKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+..+.+.|+|-++.+.+| +++|-| ++|-..+|..|+..+.+||+=|.++.
T Consensus 887 ~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 445688999999999999 889987 68999999999988999999887763
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.64 E-value=0.52 Score=31.16 Aligned_cols=45 Identities=24% Similarity=0.653 Sum_probs=30.5
Q ss_pred CCccccccccccccccCCceEEe-cCCCcccHHhHHHHHhc----CCCCCCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAA----HPQCPYCRR 198 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~----~~~CP~CR~ 198 (203)
...+..|.||.+. + .++.- .|...||..|+.+-+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999863 3 22222 38889999999875432 236999965
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.03 E-value=0.65 Score=29.24 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=27.5
Q ss_pred cccccccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCcCc
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----PQCPYCRR 198 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP~CR~ 198 (203)
.|.||...-..++-+.--.|...||..|+.+=+... -.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888653333222222388899999997644332 25999965
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.25 E-value=0.33 Score=32.13 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=31.2
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCcCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----PQCPYCRRPA 200 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP~CR~~v 200 (203)
+..+..|.||.+. ++-+.--.|...||..|+.+-+... -.||.|....
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3457789999862 3222222388899999998644332 2699997654
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.10 E-value=0.89 Score=30.90 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCccccccccccccccCCceEEe-cCCCcccHHhHHHHHh----cCCCCCCcCcC
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLA----AHPQCPYCRRP 199 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~----~~~~CP~CR~~ 199 (203)
..+...|.||..... ++.++.- .|...||..|+..-.. ..-.||.|...
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 345667999987643 3333332 2888999999976442 23479999654
No 82
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.42 E-value=0.69 Score=33.49 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=28.1
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhc---CCCCCCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA---HPQCPYCRR 198 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~---~~~CP~CR~ 198 (203)
...| ||-.....+.-+.--.|...||..|+..-... ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4456 88776554422222238899999998763322 347999974
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.61 E-value=0.19 Score=32.68 Aligned_cols=47 Identities=38% Similarity=0.755 Sum_probs=30.3
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC----CCCCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP----QCPYCRR 198 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CP~CR~ 198 (203)
....+..|.||.+. ++-+.--.|...||..|+.+-+...+ .||.|..
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567789999873 33222233888999999986443322 5887743
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.44 E-value=1.6 Score=28.70 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=32.7
Q ss_pred CCccccccccccccccCCceEEe-cCCCcccHHhHHHHHh-----cCCCCCCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLA-----AHPQCPYCRR 198 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CP~CR~ 198 (203)
.++...|+||...+.....++.- .|...||..|+.--.. ....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35667899999887544333332 3888999999864321 3457999854
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.30 E-value=3.5 Score=32.03 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHh-----------cCCCCCCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-----------AHPQCPYCRR 198 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-----------~~~~CP~CR~ 198 (203)
++..+..|.||-+ .++-+--=.|...||..||.+-+. ..-.||+|..
T Consensus 59 ~Dg~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456788999996 333222224888999999997652 1226999974
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.72 E-value=0.95 Score=32.50 Aligned_cols=48 Identities=31% Similarity=0.653 Sum_probs=31.9
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC----CCCCcCcC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP----QCPYCRRP 199 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CP~CR~~ 199 (203)
....+..|.||.+. ++-+.--.|.-.||..|+.+=+...+ .||.|...
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34567789999963 33222223788899999987554322 69999753
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.99 E-value=0.99 Score=32.95 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=25.8
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
.++..|.||.+.=...+-+.--.|...||..|+...+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 4678899998753222223334589999999998765
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.90 E-value=3 Score=28.68 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=29.4
Q ss_pred cccccccccccccCCceEEe-cCCCcccHHhHHHHHh-----cCCCCCCcCcC
Q 028791 153 TKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLA-----AHPQCPYCRRP 199 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CP~CR~~ 199 (203)
...| ||...+.....++.- .|...||..|+.--.. ....||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 4445 998876533333332 3888999999853221 34579999764
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=69.98 E-value=3.3 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=24.2
Q ss_pred CccccccccccccccCCceEEe--cCCCcccHHhHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL--PCSHKYHSDCVL 184 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~ 184 (203)
+....|++|...+...+..+.- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4567899999987766555444 488889999974
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.78 E-value=3.4 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=28.1
Q ss_pred cccccccccccCCceEEe--cCCCcccHHhHHHH----HhcCCCCCCcC
Q 028791 155 ICSVCLEEFQEEQPVTRL--PCSHKYHSDCVLPW----LAAHPQCPYCR 197 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~W----l~~~~~CP~CR 197 (203)
.|.||...+..++..+.- .|..-||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888877555444433 37778999997532 13566899885
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.01 E-value=4.2 Score=28.27 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCccccccccccccccCCceEEe-cCCCcccHHhHHH
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLP 185 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 185 (203)
.+.+...|.+|...|..-..-..- .||.+||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345677899999998765333333 3999999999654
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=64.92 E-value=0.6 Score=31.26 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=29.3
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----PQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP~CR~ 198 (203)
.++..|.||.+. ++-+.--.|...||..|+.+-+... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 457789999863 3322222388899999998644322 25888854
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.91 E-value=7.9 Score=28.21 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=22.1
Q ss_pred cccccccccccc-----ccCCceEE-ecCCCcccHHhHH
Q 028791 152 NTKICSVCLEEF-----QEEQPVTR-LPCSHKYHSDCVL 184 (203)
Q Consensus 152 ~~~~C~ICle~~-----~~~~~~~~-LpC~H~Fh~~CI~ 184 (203)
....|.+|+..- ..++.++. ..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456899998752 12223333 4499999999995
No 94
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.82 E-value=3.4 Score=31.10 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCccccccccccccccCCceEEe-cCCCcccHHhHHH
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLP 185 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 185 (203)
+.+...|.+|...|..-..-.+- .||.+||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34567899999998755332333 3999999999654
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.58 E-value=1.6 Score=32.05 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=28.5
Q ss_pred ccccccccccccCCceEEe-cCCCcccHHhHHHHHhcC----CCCCCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAH----PQCPYCRR 198 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~----~~CP~CR~ 198 (203)
..|.||.+.-...+.+..- .|...||..|+.+-+... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3677887642222233332 389999999998755332 26999974
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=64.16 E-value=3 Score=27.37 Aligned_cols=50 Identities=24% Similarity=0.619 Sum_probs=32.0
Q ss_pred CCcccccccccccccc-CCceEEe-cCCCcccHHhHHHHH-------hcCCCCCCcCcC
Q 028791 150 KSNTKICSVCLEEFQE-EQPVTRL-PCSHKYHSDCVLPWL-------AAHPQCPYCRRP 199 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~-~~~~~~L-pC~H~Fh~~CI~~Wl-------~~~~~CP~CR~~ 199 (203)
..++..|.||...... .+.++.- .|...||..|+.+-+ ...-.||.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567889999986433 2223332 388899999998632 122368888543
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.35 E-value=0.71 Score=30.21 Aligned_cols=45 Identities=36% Similarity=0.662 Sum_probs=28.9
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----PQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP~CR~ 198 (203)
..+..|.||... ++-+.--.|...||..|+.+-+... -.||.|..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 356789999873 3322223388899999998644322 25887753
No 98
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=62.72 E-value=3.9 Score=28.33 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=25.8
Q ss_pred CCccccccccccccccCCceEEe-cCCCcccHHhHHH
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLP 185 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 185 (203)
+.+...|.+|...|..-..-..- .||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44567899999998755322332 3999999999754
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.42 E-value=4.6 Score=28.53 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=24.1
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLP 185 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 185 (203)
.+...|.+|...|..-..-..- .||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4566899999988765333332 3899999888643
No 100
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=62.29 E-value=6.2 Score=35.26 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=31.3
Q ss_pred cccccccccccccCCceEEecCCCcccHH--hHHHHHhcC--CCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSD--CVLPWLAAH--PQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~--CI~~Wl~~~--~~CP~CR~~v~ 201 (203)
...|+|-...+..+ +....|.|.-|++ -+....... -.||+|...+.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 46788888887776 5566799984443 344433333 37999988763
No 101
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=62.19 E-value=4.8 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=25.7
Q ss_pred CccccccccccccccCCceEE-ecCCCcccHHhHHHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPW 186 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~W 186 (203)
.+...|.+|...|..-..-.+ -.||.+||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456789999998875433233 349999999997543
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.40 E-value=0.6 Score=33.51 Aligned_cols=47 Identities=30% Similarity=0.619 Sum_probs=29.8
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcC----CCCCCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAH----PQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~----~~CP~CR~ 198 (203)
.+...|.||...-... .++.- .|...||..|+.+=+... -.||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4566899999754322 22322 388899999997543322 25888854
No 103
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.16 E-value=4.3 Score=28.94 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=28.3
Q ss_pred CccccccccccccccCCceEEec--CCCcccHHhHHHHHhc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP--CSHKYHSDCVLPWLAA 189 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp--C~H~Fh~~CI~~Wl~~ 189 (203)
.....|.+|.+.++..--+ .-| =.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 4567899999998876322 222 3799999999998853
No 104
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.83 E-value=4.7 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCCccccccccccccccCCceEE-ecCCCcccHHhHHH
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLP 185 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~ 185 (203)
.+.+...|.+|...|..-..-.+ -.||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34556789999999875432233 23999999999643
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.77 E-value=11 Score=27.27 Aligned_cols=49 Identities=14% Similarity=0.379 Sum_probs=34.4
Q ss_pred ccccccccccccccCCc--e--EEecCCCcccHHhHHHHH-hcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQP--V--TRLPCSHKYHSDCVLPWL-AAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~--~--~~LpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v 200 (203)
....|.||-+++..... + .-.-|+--.|..|..-=. ..+..||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 45799999998654321 1 123378889999987644 5677899998765
No 106
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=60.50 E-value=7 Score=34.79 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=32.5
Q ss_pred cccccccccccccCCceEEecCCCc--ccHHhHHHHHhcCC--CCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHK--YHSDCVLPWLAAHP--QCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~--Fh~~CI~~Wl~~~~--~CP~CR~~v~ 201 (203)
...|+|-...+..+ +....|.|. |-..-+.......+ .||+|...+.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 56899998888777 455679998 54444444443333 6999988764
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.03 E-value=8.3 Score=29.40 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCCCccccccccccccccCCceEE-ecCCCcccHHhHHHHH------hc-----CCCCCCcCc
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWL------AA-----HPQCPYCRR 198 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl------~~-----~~~CP~CR~ 198 (203)
+++..+..|.||-+. ++ +.- =.|...||..||.+-+ +. .=.|++|..
T Consensus 52 d~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 344566779999963 32 221 1378899999999752 21 127999964
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=53.10 E-value=6.6 Score=28.59 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=31.8
Q ss_pred cccccccccccccCCceEEe--cCCCcccHHhHHHHH----------hcCCCCCCcCcC
Q 028791 153 TKICSVCLEEFQEEQPVTRL--PCSHKYHSDCVLPWL----------AAHPQCPYCRRP 199 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl----------~~~~~CP~CR~~ 199 (203)
...|.||...+......+.- .|...||..|+.--. .....||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 45799999987655444444 378889999985321 134579999653
No 109
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.93 E-value=4.1 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.0
Q ss_pred CccccccccccccccCC
Q 028791 151 SNTKICSVCLEEFQEEQ 167 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~ 167 (203)
.+.+.|+||+..|...+
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 35689999998887653
No 110
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.11 E-value=7.5 Score=26.21 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=22.6
Q ss_pred ccccccccccccCCceEEe-cCCCcccHHhHH
Q 028791 154 KICSVCLEEFQEEQPVTRL-PCSHKYHSDCVL 184 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~ 184 (203)
..|.+|...|..-..-..- .||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4899999998754322332 399999999964
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.70 E-value=6.7 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.584 Sum_probs=27.5
Q ss_pred cCCCCccccccccccccccCCceEEe---cCCCcccHHhHHHHHhcCC----CCCCcC
Q 028791 147 RGSKSNTKICSVCLEEFQEEQPVTRL---PCSHKYHSDCVLPWLAAHP----QCPYCR 197 (203)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~~~~~L---pC~H~Fh~~CI~~Wl~~~~----~CP~CR 197 (203)
.....++..|.+|.+ .+ .++.- .|...||..|+. +...+ .||.|.
T Consensus 9 ~~~~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 9 EPKQMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp -CCCSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCcCCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 334456778999984 23 23333 277889999997 43322 477654
No 112
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.67 E-value=6 Score=32.10 Aligned_cols=33 Identities=18% Similarity=0.508 Sum_probs=24.3
Q ss_pred cccccccccccccCCceEEec-CCCcccHHhHHH
Q 028791 153 TKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLP 185 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~ 185 (203)
+..|.+|...|..-..-.+-. ||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 469999999987553333333 999999999654
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.43 E-value=1.8 Score=30.14 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=26.0
Q ss_pred cccccccccccCCceEEe-cCCCcccHHhHHHHHhc----C-CCCCCcCc
Q 028791 155 ICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAA----H-PQCPYCRR 198 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~----~-~~CP~CR~ 198 (203)
.|.||...-... .+..- .|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776543222 22222 28889999999875532 2 36999875
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.08 E-value=14 Score=26.44 Aligned_cols=42 Identities=26% Similarity=0.609 Sum_probs=26.4
Q ss_pred CccccccccccccccCCceEEec-----CC-CcccHHhHHHHHh----cCCCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-----CS-HKYHSDCVLPWLA----AHPQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-----C~-H~Fh~~CI~~Wl~----~~~~CP~CR~~ 199 (203)
++..-| ||..... ++ .+- |. ..||..|+. +. ..-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 345556 9988643 32 233 44 579999996 32 23479999764
No 115
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=49.98 E-value=15 Score=24.75 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=31.0
Q ss_pred CCCcccccccccccc-ccCCceEEec-CCCcccHHhHHHHH--hcCCCCCCcCc
Q 028791 149 SKSNTKICSVCLEEF-QEEQPVTRLP-CSHKYHSDCVLPWL--AAHPQCPYCRR 198 (203)
Q Consensus 149 ~~~~~~~C~ICle~~-~~~~~~~~Lp-C~H~Fh~~CI~~Wl--~~~~~CP~CR~ 198 (203)
...++..|.||.+.- ...+.++.-. |.-.||..|+..-. ...-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345678899998753 2333333333 88899999997532 12225777743
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.55 E-value=8.7 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=23.9
Q ss_pred Cccccccccccccc-cCC-ceEEecCCCcccHHhHH
Q 028791 151 SNTKICSVCLEEFQ-EEQ-PVTRLPCSHKYHSDCVL 184 (203)
Q Consensus 151 ~~~~~C~ICle~~~-~~~-~~~~LpC~H~Fh~~CI~ 184 (203)
.+...|.+|...|. ..+ ...-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999983 322 23334599999998854
No 117
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.49 E-value=18 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=13.0
Q ss_pred cccccccccccccCCceEEecCCCcccHHh
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDC 182 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 182 (203)
...|+.|-+.+. ++ .+..-+..||..|
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C 51 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEE 51 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTT
T ss_pred CCCCccCCCEec-ce--EEEECCccccccC
Confidence 445666666553 22 2223455555555
No 118
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.41 E-value=2.9 Score=28.98 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=27.8
Q ss_pred ccccccccccccCCceEEe-cCCCcccHHhHHHHHhc-----CCCCCCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAA-----HPQCPYCRR 198 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~-----~~~CP~CR~ 198 (203)
..|.||...-..+ .++.- .|...||..|+.+=+.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788888642233 23322 38899999999864422 236998864
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.17 E-value=7.2 Score=31.96 Aligned_cols=33 Identities=15% Similarity=0.401 Sum_probs=24.1
Q ss_pred cccccccccccccCCceEEe-cCCCcccHHhHHH
Q 028791 153 TKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLP 185 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 185 (203)
...|.+|...|..-..-.+- .||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45899999988765332333 3999999999654
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=45.87 E-value=12 Score=26.21 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=29.6
Q ss_pred Ccccccccccccc-ccCCceEEe-cCCCcccHHhHHHHH--hcCCCCCCcCc
Q 028791 151 SNTKICSVCLEEF-QEEQPVTRL-PCSHKYHSDCVLPWL--AAHPQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~-~~~~~~~~L-pC~H~Fh~~CI~~Wl--~~~~~CP~CR~ 198 (203)
.++..|.||.+.- ...+.++.- .|.-.||..|+.+-+ ...-.||.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 4577899999753 122223322 288899999997632 12235888854
No 121
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=43.77 E-value=81 Score=30.52 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=31.6
Q ss_pred CccccccccccccccCCce-EE------ecCCCc--------------------ccHHhHHHHHhcC--------CCCCC
Q 028791 151 SNTKICSVCLEEFQEEQPV-TR------LPCSHK--------------------YHSDCVLPWLAAH--------PQCPY 195 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~-~~------LpC~H~--------------------Fh~~CI~~Wl~~~--------~~CP~ 195 (203)
.+...|+-|+.++.++..- .. +.||-. +|..|-.++-... ..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4567899999998776421 11 225433 6999999997321 26999
Q ss_pred cCc
Q 028791 196 CRR 198 (203)
Q Consensus 196 CR~ 198 (203)
|-=
T Consensus 184 CGP 186 (772)
T 4g9i_A 184 CGP 186 (772)
T ss_dssp TSC
T ss_pred CCc
Confidence 953
No 122
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=43.39 E-value=8.1 Score=26.15 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=26.4
Q ss_pred CccccccccccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-P--CS-HKYHSDCVLPWLAA----HPQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~----~~~CP~CR~~ 199 (203)
++..-| ||..... ++ ++.- . |. ..||..|+. +.. .-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345567 8987543 32 2211 1 44 589999997 322 3379999764
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.81 E-value=13 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=21.5
Q ss_pred ccccccccccc------cCCceE-EecCCCcccHHhHHHH
Q 028791 154 KICSVCLEEFQ------EEQPVT-RLPCSHKYHSDCVLPW 186 (203)
Q Consensus 154 ~~C~ICle~~~------~~~~~~-~LpC~H~Fh~~CI~~W 186 (203)
..|.||+..-. .++.++ -..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46899987531 122333 3449999999998754
No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.54 E-value=9.1 Score=28.72 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=26.0
Q ss_pred CccccccccccccccCCceEE-ecCCCcccHHhHHHHHhcCCCCCCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLAAHPQCPYC 196 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~~~CP~C 196 (203)
.....|.+|-..|..-..-.+ -.||.+||..|..........|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 345689999998875432233 3499999999965543333334333
No 125
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=41.20 E-value=4.1 Score=27.54 Aligned_cols=44 Identities=25% Similarity=0.555 Sum_probs=26.4
Q ss_pred cccccccccccCCceEEe-cCCCcccHHhHHHHHhc-----CCCCCCcCcC
Q 028791 155 ICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAA-----HPQCPYCRRP 199 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~-----~~~CP~CR~~ 199 (203)
.|.||...-..+ .++.- .|...||..|+.+=+.. .=.||.|...
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456777532222 22222 28889999999864422 3369998753
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.75 E-value=21 Score=23.37 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=5.3
Q ss_pred ccccccccccc
Q 028791 155 ICSVCLEEFQE 165 (203)
Q Consensus 155 ~C~ICle~~~~ 165 (203)
.|+.|-+.+..
T Consensus 11 ~C~~C~~~I~~ 21 (76)
T 2cu8_A 11 KCPKCDKTVYF 21 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CCcCCCCEeEC
Confidence 45555554443
No 127
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.36 E-value=10 Score=25.00 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=29.9
Q ss_pred CccccccccccccccCCceEEecCCCcccH-HhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHS-DCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~-~CI~~Wl~~~~~CP~CR~~v 200 (203)
.+-+.|..|-..+.... ....=+..||. .|.... ..+.|--|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 35688999988877653 22335667887 587653 455687776543
No 128
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.11 E-value=6 Score=34.74 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred CccccccccccccccCCceEE-ecCCCcccHHhHHHHHh-------cCCCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLA-------AHPQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~-------~~~~CP~CR~~ 199 (203)
.+...|.+|...|..-..-.. -.||+.||..|....+. ....|-.|-..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 456789999998875422122 34999999999876541 12357666443
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.05 E-value=19 Score=23.87 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=5.3
Q ss_pred CCcccHHhHHHH
Q 028791 175 SHKYHSDCVLPW 186 (203)
Q Consensus 175 ~H~Fh~~CI~~W 186 (203)
+..||..|....
T Consensus 61 g~~yC~~cy~~~ 72 (79)
T 1x62_A 61 DQIYCEKHARER 72 (79)
T ss_dssp SCEECHHHHHHH
T ss_pred CEEECHHHHHHH
Confidence 334444444443
No 130
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.47 E-value=19 Score=24.14 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=5.6
Q ss_pred cccccccccccC
Q 028791 155 ICSVCLEEFQEE 166 (203)
Q Consensus 155 ~C~ICle~~~~~ 166 (203)
.|+.|-+.+..+
T Consensus 17 ~C~~C~~~I~~~ 28 (80)
T 2dj7_A 17 HCAGCKEEIKHG 28 (80)
T ss_dssp CCTTTCCCCSSS
T ss_pred CCcCcCCeeCCC
Confidence 455555444433
No 131
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.85 E-value=12 Score=24.77 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=27.6
Q ss_pred ccccccccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCc
Q 028791 154 KICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAHPQCPYC 196 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CP~C 196 (203)
..|-.|...|.... ...-+ |++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999885431 12233 99999999953322344478887
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.64 E-value=5.8 Score=33.09 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=25.0
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhc-----CCCCCCcCcC
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-----HPQCPYCRRP 199 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-----~~~CP~CR~~ 199 (203)
..|.+|...-..++-+.-=.|...||..|+.+=+.. .=.||.|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888764222222222238889999999864422 2369999753
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.59 E-value=19 Score=23.08 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=19.3
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+-+.|..|-..+.... ....=+..||..|....+
T Consensus 30 ~CF~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIG--FVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TTSBCSSSCCBCSSSC--CEEETTEEECHHHHHHHH
T ss_pred cCCEeCCCCCcCCCCc--cEeECCeEECHHHhhhhc
Confidence 4566777766665542 222345567777766554
No 134
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.53 E-value=33 Score=22.21 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 028791 154 KICSVCLEEFQ 164 (203)
Q Consensus 154 ~~C~ICle~~~ 164 (203)
..|+.|-+.+.
T Consensus 12 ~~C~~C~~~I~ 22 (77)
T 1g47_A 12 ATCERCKGGFA 22 (77)
T ss_dssp CBCSSSCCBCC
T ss_pred CCchhcCCccC
Confidence 34444444443
No 135
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.47 E-value=26 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.604 Sum_probs=12.2
Q ss_pred ccccccccccccCCceEEecCCCcccHHh
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDC 182 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 182 (203)
..|+.|-+.+...+.+. .-+..||..|
T Consensus 16 ~~C~~C~~~I~~~e~v~--a~~~~wH~~C 42 (82)
T 2co8_A 16 DLCALCGEHLYVLERLC--VNGHFFHRSC 42 (82)
T ss_dssp CBCSSSCCBCCTTTBCC--BTTBCCBTTT
T ss_pred CCCcccCCCcccceEEE--ECCCeeCCCc
Confidence 45555555554333222 2344455544
No 136
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.85 E-value=29 Score=23.48 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=5.1
Q ss_pred ccccccccccc
Q 028791 154 KICSVCLEEFQ 164 (203)
Q Consensus 154 ~~C~ICle~~~ 164 (203)
..|..|-+.+.
T Consensus 26 ~~C~~C~~~I~ 36 (89)
T 1x64_A 26 PLCDKCGSGIV 36 (89)
T ss_dssp CBCTTTCCBCC
T ss_pred CCcccCCCEec
Confidence 34555554444
No 137
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.51 E-value=32 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=14.6
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHH
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLP 185 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~ 185 (203)
-+.|..|...+.... ....=+..||..|...
T Consensus 33 CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 33 CFICHRCQQPIGTKS--FIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TTCCSSSCCCCCSSS--EEEETTEEEEHHHHHH
T ss_pred CCcccccCCccCCCc--cCccCCeEECHHHHhH
Confidence 455666655554431 1122344555555544
No 138
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.36 E-value=32 Score=21.95 Aligned_cols=33 Identities=12% Similarity=0.382 Sum_probs=17.9
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPW 186 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~W 186 (203)
+-+.|..|...|.... ....=+..||..|....
T Consensus 30 ~CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQR--FTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSC--CEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCc--eEeeCCeEECHHHHHHH
Confidence 3566777776664331 22233556677776543
No 139
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.09 E-value=19 Score=23.98 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=29.2
Q ss_pred CccccccccccccccCCceEEe-cCCCcccHHhHHHHH----hcCCCCCCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWL----AAHPQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl----~~~~~CP~CR~ 198 (203)
.....| ||-.....++.++.- .|...||..|+.--. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 445678 798765444333332 388889999985432 23347888854
No 140
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.73 E-value=26 Score=22.17 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=5.0
Q ss_pred cccccccccc
Q 028791 155 ICSVCLEEFQ 164 (203)
Q Consensus 155 ~C~ICle~~~ 164 (203)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (66)
T 1nyp_A 7 ICGACRRPIE 16 (66)
T ss_dssp EETTTTEECC
T ss_pred CCcccCCEec
Confidence 4555555444
No 141
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.02 E-value=22 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=24.3
Q ss_pred CCccccccccccccccCCceEEecC-CCcccHHhHHHH
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPC-SHKYHSDCVLPW 186 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~CI~~W 186 (203)
.++..-|.||.++ . .+.-+.| +-.||..|..+-
T Consensus 5 ~ee~pWC~ICneD--A--tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED--A--TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC--C--CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC--C--eEEecCCCCceehHHHHHHH
Confidence 3456679999987 2 2455668 778999998774
No 142
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.22 E-value=29 Score=25.04 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=24.1
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
+-+.|..|-..|..........=+..||..|....+.....|..|..+|
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCcc
Confidence 3456666666554211112222345566666655443333566666555
No 143
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.36 E-value=36 Score=22.70 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=27.8
Q ss_pred cccccccccccccCCceEE-ecCCCcccHHhHHHHH---------hcCCCCCCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWL---------AAHPQCPYCRR 198 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl---------~~~~~CP~CR~ 198 (203)
...| ||...+... .++. -.|...||..|+.--. .....||.|+.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3456 898876533 2222 2388899999984321 24678999964
No 144
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.11 E-value=22 Score=27.63 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=24.0
Q ss_pred ccccccccccccc--cCCceEEecCCCcccHHhH
Q 028791 152 NTKICSVCLEEFQ--EEQPVTRLPCSHKYHSDCV 183 (203)
Q Consensus 152 ~~~~C~ICle~~~--~~~~~~~LpC~H~Fh~~CI 183 (203)
++..|.+|...|. .+....-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5789999999763 3333444569999999997
No 145
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.52 E-value=13 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=20.1
Q ss_pred ccccccccccccCCceEEecCCCcccHHhH
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCV 183 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI 183 (203)
..|+.|-......|.+. .=+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 47999998876665444 34778998883
No 146
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.49 E-value=41 Score=22.11 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=5.4
Q ss_pred ccccccccccc
Q 028791 155 ICSVCLEEFQE 165 (203)
Q Consensus 155 ~C~ICle~~~~ 165 (203)
.|+.|-+.+..
T Consensus 17 ~C~~C~~~I~~ 27 (82)
T 1x63_A 17 KCKGCFKAIVA 27 (82)
T ss_dssp BCSSSCCBCCS
T ss_pred cCccCCccccc
Confidence 45555554443
No 147
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.05 E-value=37 Score=26.72 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=25.8
Q ss_pred CCCCccccccccccccccCCceEEe---cCCCcccHHhHHHHH
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTRL---PCSHKYHSDCVLPWL 187 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~L---pC~H~Fh~~CI~~Wl 187 (203)
+++..+.-|.||-+. + .++.- .|...||..||..++
T Consensus 74 DeDG~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp CTTSSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHT
T ss_pred CCCCCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhc
Confidence 445567889999963 2 33332 377899999999987
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.01 E-value=43 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=16.3
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLP 185 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~ 185 (203)
+-+.|..|-..+.... ....=+..||..|...
T Consensus 32 ~CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRS--FVPDKGAHYCVPCYEN 63 (72)
T ss_dssp TTCBCTTTCCBTTTSC--EEEETTEEEEHHHHHH
T ss_pred ccCeECCCCCcCCCCc--cCCcCCeEECHHHHHH
Confidence 3456666666555432 2222345566666544
No 149
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.07 E-value=9 Score=26.88 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=29.9
Q ss_pred cccccccccccccc-CCceEEec-CCCcccHHhHHHHHh--------cCCCCCCcCc
Q 028791 152 NTKICSVCLEEFQE-EQPVTRLP-CSHKYHSDCVLPWLA--------AHPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~-~~~~~~Lp-C~H~Fh~~CI~~Wl~--------~~~~CP~CR~ 198 (203)
.+..|.||...-.. .+.++.-. |...||..|+.+=+. ..-.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46689999975332 23333322 889999999987442 1236887753
No 150
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.52 E-value=33 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=13.8
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCV 183 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI 183 (203)
+-+.|..|-..|.... . ..=+..||..|.
T Consensus 40 ~CF~C~~C~~~L~~~~--f-~~~g~~yC~~cy 68 (79)
T 2cor_A 40 DHFNCANCGKELTADA--R-ELKGELYCLPCH 68 (79)
T ss_dssp TTSBCSSSCCBCCTTC--E-EETTEEECHHHH
T ss_pred CCCEeCCCCCccCCCC--E-eECCEEeCHHHH
Confidence 3455666655555331 1 223445555554
No 151
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.56 E-value=38 Score=24.40 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=34.6
Q ss_pred cccccccccccccc-CCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQE-EQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~-~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+-+.|..|-..|.. +.. ....=+..||..|....+.....|-.|..+|.
T Consensus 31 ~CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 46889999888752 111 22335677999999887766558999988775
No 152
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.69 E-value=4.8 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.655 Sum_probs=12.6
Q ss_pred cCCCcccHHhHHHH
Q 028791 173 PCSHKYHSDCVLPW 186 (203)
Q Consensus 173 pC~H~Fh~~CI~~W 186 (203)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999999887
No 153
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.39 E-value=50 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=19.6
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+-+.|..|-..|.... ....=+..||..|....+
T Consensus 41 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGT--YASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TTCBCTTTCCBCCTTT--CCCSSSCCCCHHHHHHHS
T ss_pred CCCeeCCCCCCCCCCC--cEeECCEEECHHHHHHHh
Confidence 4567777776665542 122235567777775543
No 154
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.35 E-value=37 Score=22.11 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 028791 153 TKICSVCLEEF 163 (203)
Q Consensus 153 ~~~C~ICle~~ 163 (203)
-+.|..|-..|
T Consensus 35 CF~C~~C~~~L 45 (76)
T 1x68_A 35 CFNCGKCSVSL 45 (76)
T ss_dssp GCBCTTTCCBC
T ss_pred cCChhhCCCcC
Confidence 34444444444
No 155
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.32 E-value=32 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+-+.|..|-..|..++... ..=+..||..|.....
T Consensus 30 ~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred CcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 4577788877776333222 2245567777766543
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=26.13 E-value=36 Score=21.51 Aligned_cols=39 Identities=21% Similarity=0.586 Sum_probs=21.8
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
...|+.|-+.+...+.++. .-+..||..|+ .|-.|..+|
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 4467777776665543322 24556666664 455565554
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=29 Score=22.12 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=21.1
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+-+.|..|-..+.... ....=+..||..|....+
T Consensus 30 ~CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQR--FTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSC--EEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCc--cEeECCEEECHHHhHHHh
Confidence 4577788877765332 333346677877776654
No 158
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.12 E-value=55 Score=22.01 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=27.8
Q ss_pred ccccccccccccccCCceEE-e--cCCCcccHHhHHHHHh---------cCCCCCCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTR-L--PCSHKYHSDCVLPWLA---------AHPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~-L--pC~H~Fh~~CI~~Wl~---------~~~~CP~CR~ 198 (203)
....| ||-.....+. ++. = .|...||..|+.---. ....||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 45567 8988644442 222 2 4888999999853211 2457999864
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=45 Score=21.37 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=13.5
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHH
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVL 184 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~ 184 (203)
-+.|..|-..+.... ....=+..||..|..
T Consensus 35 CF~C~~C~~~L~~~~--f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRG--FLTERDDILCPDCGK 64 (72)
T ss_dssp TCBCSSSCCBCTTSC--CEECSSSEECHHHHH
T ss_pred cCEeccCCCcCCCCc--cEeECCEEEChhHcC
Confidence 455666655554221 112234455555543
No 160
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.48 E-value=8.5 Score=25.06 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=24.5
Q ss_pred ccccccccccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRL-P--CS-HKYHSDCVLPWLAA----HPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~----~~~CP~CR~ 198 (203)
+..-| ||-.... ++ ++.- . |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 9987642 32 2211 1 44 589999997 322 336888854
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.99 E-value=13 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.609 Sum_probs=14.4
Q ss_pred ecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 172 LPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 172 LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
..||+.|. .=+.....||.|+..
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34888881 111334679999874
No 162
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.94 E-value=31 Score=25.26 Aligned_cols=11 Identities=27% Similarity=1.053 Sum_probs=9.8
Q ss_pred ccHHhHHHHHh
Q 028791 178 YHSDCVLPWLA 188 (203)
Q Consensus 178 Fh~~CI~~Wl~ 188 (203)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.84 E-value=31 Score=25.29 Aligned_cols=11 Identities=18% Similarity=0.899 Sum_probs=9.7
Q ss_pred ccHHhHHHHHh
Q 028791 178 YHSDCVLPWLA 188 (203)
Q Consensus 178 Fh~~CI~~Wl~ 188 (203)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999973
No 164
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.52 E-value=38 Score=22.32 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=12.4
Q ss_pred cccccccccccCCceEEecCCCcccHHh
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDC 182 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~C 182 (203)
.|+.|-+.+. ++.+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~-~~~v--~a~~~~wH~~C 41 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVV--SALGKTYHPDC 41 (81)
T ss_dssp BCTTTCCBCC-SCCE--EETTEEECTTT
T ss_pred cCccccCEec-cceE--EECCceeCccC
Confidence 5666666555 2221 22455566555
No 165
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=22.51 E-value=9.3 Score=24.88 Aligned_cols=40 Identities=28% Similarity=0.622 Sum_probs=24.0
Q ss_pred ccccccccccccccCCceEEec-----CC-CcccHHhHHHHHhc----CCCCCCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLP-----CS-HKYHSDCVLPWLAA----HPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-----C~-H~Fh~~CI~~Wl~~----~~~CP~CR~ 198 (203)
+..-| ||..... + ..+- |. ..||..|+. +.. .-.||.|..
T Consensus 9 e~~~C-~C~~~~~-g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9987532 3 2333 43 579999997 322 336888853
No 166
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=37 Score=22.34 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=20.9
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+-+.|..|-..|..++......=+..||..|....+
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 456777777776544332212345667777776654
No 167
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.04 E-value=36 Score=24.62 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA 189 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~ 189 (203)
..-+.|..|-..|..++.. ...=+..||..|....+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhcc
Confidence 3568889998888554333 3335778888888877643
No 168
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.67 E-value=61 Score=28.98 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCccccccccccccccCCceEEe--cCCCcccHHhHHHHH
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRL--PCSHKYHSDCVLPWL 187 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl 187 (203)
++..+.-|.||-+. ++.+.-= .|...||..||..++
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 44567789999863 3222222 488999999999987
No 169
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.67 E-value=84 Score=20.85 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=28.2
Q ss_pred cccccccccccccCCceEEe-cCCCcccHHhHHHHHh-----cCCCCCCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLA-----AHPQCPYCRR 198 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CP~CR~ 198 (203)
...-.||-..+.....++.- .|.-.||..|+.--.. ....||.|+.
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 34445898766433333332 3888999999953321 2457998864
No 170
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.09 E-value=47 Score=21.67 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=17.6
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPW 186 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~W 186 (203)
+-+.|..|-..+... . ....=+..||..|....
T Consensus 40 ~CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQ-Q-FTSRDEDPYCVACFGEL 72 (80)
T ss_dssp TTCBCSSSCCBCTTC-C-EEECSSSEEEHHHHHHH
T ss_pred hhCCcccCCCcCCCC-e-eEeECCEEECHHHHHHH
Confidence 346666776666432 1 22334556666666543
Done!