BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028792
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 326 bits (836), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 156/188 (82%), Positives = 164/188 (87%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
NKCDLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM +
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
Query: 181 NARPPTVQ 188
A V+
Sbjct: 189 GAEKSNVK 196
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 322 bits (825), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 153/173 (88%), Positives = 160/173 (92%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIGDSGVGK+CLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
NKCDLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 320 bits (821), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/174 (87%), Positives = 159/174 (91%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
KCDLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 320 bits (820), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 158/170 (92%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
DLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 320 bits (819), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
DLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 317 bits (811), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 157/170 (92%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYD LFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKC
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
DLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 313 bits (801), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 150/173 (86%), Positives = 156/173 (90%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
N EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
KCDLT KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+F AA IK R
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 310 bits (795), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/171 (87%), Positives = 155/171 (90%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
DLT KVV TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 310 bits (794), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/171 (87%), Positives = 155/171 (90%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
DLT KVV TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 307 bits (787), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/164 (89%), Positives = 152/164 (92%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT K
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
VV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/205 (67%), Positives = 159/205 (77%), Gaps = 4/205 (1%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+ V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
NKCDL +VV Y+ AK FAD +PF+ETSA +TNVE AF+ MA IK M+ Q +
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 181 NARPP----TVQIRGQPVNQKSGCC 201
+ V ++GQ + GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 160/206 (77%), Gaps = 5/206 (2%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+ V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
NKCDL +VV Y+ AK FAD +PF+ETSA +TNVE AF+ MA IK M+ Q +
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 181 NARPP----TVQIRGQPV-NQKSGCC 201
+ V ++GQ + N GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/173 (76%), Positives = 150/173 (86%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ + KT+KLQ
Sbjct: 2 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQ 61
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGII+VYDVTD++SF+NVKQW+ EIDRYA ENVNKLLVG
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
NKCDL + +VV+ + + AD GI F+ETSAK+A NVEQAF MA IK R+
Sbjct: 122 NKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
+EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQIW
Sbjct: 16 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 75
Query: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
DTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+ V KLLVGNK
Sbjct: 76 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 135
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
CDL +VV Y+ AK FAD +PF+ETSA +TNVE AF+ MA IK
Sbjct: 136 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 233 bits (594), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/117 (94%), Positives = 113/117 (96%)
Query: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
LLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 117
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 138/173 (79%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M YDYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
NKCD+ + VS E + A + GI FMETSAK+ NVE AF +A IK +M
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 226 bits (575), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 136/168 (80%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
DYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++GNKCD+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
+ VS E + A + GI FMETSAK+ NVE AF +A IK +M
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/180 (60%), Positives = 136/180 (75%), Gaps = 5/180 (2%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M +YD+LFKLL+IGDSGVGKS LLLRFAD+++ SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFRTITS+YYRG HG+IVVYDVT ESF NVK+WL+EI++ ++V ++LVG
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 176
NK D KVV E A FA ++GI ETSAK NVE+ F + + K+ +A Q
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 210 bits (535), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 133/171 (77%), Gaps = 1/171 (0%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+ +VV+ + +A A E+GIPF+E+SAK+ NV + F +A I+ ++ S
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A++ LLVGNK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+VV+ + +A A E+GIPF+E+SAK+ NV + F +A I+ ++ S
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A++ LLVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+VV+ + +A A E+GIPF+E+SAK+ NV + F +A I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+ K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
ERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+VV+ + +A A E+GIPF+E+SAK+ NV + F +A I+ ++ S
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+VV+ + +A A E+GIPF+E+SAK+ NV + F +A I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWD 63
YD FK++L+GDSGVGK+CLL+RF D ++L ++IST+G+DF+ + ++ DG +KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI YA +V +L+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
D +VV E + A E G+PFMETSAK+ NV+ AF A+A +K R P
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
+DY+FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ +N LLVGNKCD
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ +VVS E + AD +G F E SAK NV+Q F + I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 126/170 (74%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
+DY+FKLL+IG+S VGK+ L R+ADD++ +++ST+G+DFK++TV + K +KLQIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ +N +LVGNKCD
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+ +VV E + A+++G F E SAK +V QAF + +I ++M+
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 120/168 (71%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
DY+FKLLLIG+S VGK+ L R+ADDS+ +++ST+G+DFK++TV + K IKLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQER+RTIT++YYRGA G +++YD+ +QESF V+ W +I Y+ +N +LVGNKCDL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
+VV E + AD++G F E SAK NV+Q F + I +M
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 6/201 (2%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
++ +DY FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K IKLQI
Sbjct: 2 SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
WDTAG ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W +I Y+ +N LLVGN
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA-----SQ 176
KCD +VVS E + AD +G F E SAK NV+Q F + I + + +
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTAD 181
Query: 177 PASNNARP-PTVQIRGQPVNQ 196
PA A+ P + + P +Q
Sbjct: 182 PAVTGAKQGPQLTDQQAPPHQ 202
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 121/167 (72%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R V DGK IKLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
QE FR+IT SYYRGA G ++VYD+T +E+FN++ WL + +++S N+ +L+GNK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
+ + V E +AFA E G+ FMETSAK+A NVE+AF+ A I ++
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 123/169 (72%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
+ + Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + DGK IKLQ
Sbjct: 3 LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++ WL + ++++ N+ +L+G
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + + V E +AFA E G+ FMETSAK+A+NVE+AF+ A I
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 124/169 (73%), Gaps = 2/169 (1%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
++EYDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK Q
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 81
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVG
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
YDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK QIWD
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWD 75
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
++EYDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK Q
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 81
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVG
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
++EYDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK Q
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVG
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 125/173 (72%), Gaps = 3/173 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
YDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK QIWD
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWD 60
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 120
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
DL + V + A+AFA++ + F+ETSA +TNVE+AF + I R+ SQ
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY-RIVSQ 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 180 bits (456), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 125/179 (69%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+YD+LFK++LIG++GVGK+CL+ RF + +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQERFR+IT SYYR A+ +I+ YD+T +ESF + +WL EI++YAS V +LVGNK
Sbjct: 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
DL + VS + A+ F++ + ++ETSAK + NVE+ F+ +A + + NN
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQ 60
++EYDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK Q
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQ 63
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVG
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVG 123
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 179 bits (454), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
+ +YD+LFKL+L+GD+ VGK+C++ RF ++ E STIGVDF ++T+E GK +KLQI
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V W+ ++ +YA N+ +LL+GN
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 122 KCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASIKNR 172
K DL+ + VS A++ A+ I +ETSAK ++NVE+AF+ +A + R
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIW 62
EYDYLFK++LIGDSGVGKS LL RF + + LES STIGV+F R+++ DGKTIK QIW
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIW 59
Query: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
DTAG ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVGNK
Sbjct: 60 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 119
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
DL + V + A+AFA++ G+ F+ETSA +TNVE AF + I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 113/165 (68%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Y Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ IKLQIWDT
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQERFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GNK D
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
L A + V+YE AK FA+E G+ F+E SAK+ NVE AF+ A I
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D+ ++++IG GVGK+ L+ RF DD++ E+ ST+GVDFKI+TVE GK I+LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+ ID+YASE+ LLVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 126 TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRM 173
++ ++ + + FA +I G+ F E SAK NV++ F+ + I +M
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 112/165 (67%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Y Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ IKLQIWDT
Sbjct: 27 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQ RFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GNK D
Sbjct: 87 AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
L A + V+YE AK FA+E G+ F+E SAK+ NVE AF+ A I
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 120/175 (68%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M+ YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQ
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L G
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
NK DL A++ V++ A FA E + F+ETSA + NVE+AF+ A I N++ S
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVE-QDGKTIKLQIW 62
YDYLFK++LIGDSGVGKS LL RF D + LES STIGV+F ++++ ++ K IK QIW
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESK-STIGVEFATKSIQLKNNKIIKAQIW 62
Query: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122
DTAGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+ A N+ LLVGNK
Sbjct: 63 DTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNK 122
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNN 181
DL +V++ A +A + + F+ETSA ATNVE AF + I N + A+ N
Sbjct: 123 SDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 117/170 (68%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D+LFK L+IG +G GKSCLL +F ++ + + TIGV+F R V GKT+KLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
GQERFR++T SYYRGA G ++VYD+T +E++N++ WL + AS N+ +L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
+ V++ A FA E + F+ETSA + NVE+AF+ A +I N++ S
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 129/215 (60%), Gaps = 17/215 (7%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+YD LFK++LIGDSGVGKS LL RF + + STIGV+F RT+E +GK IK QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAGQER+R ITS+YYRGA G ++VYD++ S+ N WL+E+ A +NV L+GNK
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ------- 176
DL + V E +K FA E + F ETSA ++ NV++AF + +I +++
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 177 PASNNA------RPPTVQIRGQPVNQK----SGCC 201
A+ NA PT+ + P K + CC
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 116/168 (69%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQIWDT
Sbjct: 8 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AGQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L GNK D
Sbjct: 68 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
L A++ V++ A FA E + F+ETSA + +VE+AF+ A I N+
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 167 bits (422), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M +YDYLFK++LIGDSGVGKS LL RF D + STIGV+F RT+E + K IK Q
Sbjct: 3 MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
IWDTAG ER+R ITS+YYRGA G ++VYD++ S+ N WL E+ A +NV L+G
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK DL + V + AK FA E + F ETSA ++ NV++AF + +I
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 115/168 (68%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQIWDT
Sbjct: 5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124
AG ERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L GNK D
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
L A++ V++ A FA E + F+ETSA + +VE+AF+ A I N+
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F ++V D T+K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T+QE+F K W+ E+ R AS ++ L GNK DL
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
++V YE A+A+AD+ + FMETSAK+A NV F+A+A +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+A+AD+ + FMETSAK+A NV + FMA+A +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 108/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+A+AD+ + FMETSAK+A NV + FMA+A +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STI F +TV D T+K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+A+AD+ + FMETSAK+A NV + FMA+A +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + FMETSAK++ NV + FMA+A +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+L+IG+SGVGKS LLLRF DD++ +TIGVDFK++T+ DG KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTA 127
RFRT+T SYYRGA G+I+VYDVT +++F + WLNE++ Y + N + LVGNK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPT 186
N+ V FA + F+E SAK+ V+ AF + I + N P+
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 106/161 (65%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
R+ ++ YYRGA IVVYD+T++ESF K W+ E+ R AS N+ L GNK DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V ++ A+++AD+ + F ETSAK++ NV + F A+A +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 117/175 (66%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQI 61
+ +Y+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV +K QI
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121
WDTAG ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGN
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
K DL+ + V E A+ FA+ G+ F+ETSA +TNVE AF + I +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+Y+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV +K QIWD
Sbjct: 6 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
TAG ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGNK
Sbjct: 66 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
DL+ + V E A+ FA+ G+ F+ETSA +TNVE AF + I +++ Q
Sbjct: 126 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTV--------EQDGK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V GK
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SE 112
K LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A E
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
N + +L+GNK DL + V+ A+ AD+ GIP+ ETSA + NVE+A + I R
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 173 M 173
M
Sbjct: 201 M 201
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 131/217 (60%), Gaps = 19/217 (8%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
+ +YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54 GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
GK K LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
EN + +L+GNK DL + V+ A+ A++ GIP+ ETSA + NVE++ + I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 171 NRMASQPASNNARPPTV------QIRGQ-PVNQKSGC 200
RM + P TV ++ G+ P +K C
Sbjct: 185 KRM-EKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+FK+++IGDS VGK+CL RF + + +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 68 ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 125
ERFR ++ YYR H ++ VYD+T+ SF+++ W+ E ++ N + ++LVGNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT---NVEQAFMAMAASIKNR 172
+ V + A+ FAD +P ETSAK+ +VE FM +A +K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 119/183 (65%), Gaps = 11/183 (6%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
+ +YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54 GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
GK K LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
EN + +L+GNK DL + V+ A+ A++ GIP+ ETSA + NVE++ + I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 171 NRM 173
RM
Sbjct: 185 KRM 187
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD G GKS L+LRF D ++E STIG F +T+ + T+K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129
+ ++ YYRGA I+V+DVT+Q SF K+W+ E+ + N+ L GNK DL +
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASN 180
V+ E A+ +A E G+ FMETSAK+ATNV++ F +A + QP N
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR---VQPTEN 181
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 118/183 (64%), Gaps = 11/183 (6%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
+ +YDYL K L +GDSGVGK+ +L ++ D + +I+T+G+DF+ + V
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 54 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
G+ I LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++ +A
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
SEN + +L GNK DL + V E A+ A++ GIP+ ETSA + TN+ A + I
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 171 NRM 173
RM
Sbjct: 185 KRM 187
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+FK+++IGDS VGK+CL RF + + +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 68 ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 125
ERFR ++ YYR H ++ VYD T+ SF+++ W+ E ++ N + ++LVGNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT---NVEQAFMAMAASIKNR 172
+ V + A+ FAD P ETSAK+ +VE F +A +K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 11/182 (6%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
+ +YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54 GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
GK K LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
EN + +L+GNK DL + V+ A+ A++ GIP+ ETSA + NVE++ + I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 171 NR 172
R
Sbjct: 185 KR 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 11/182 (6%)
Query: 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------- 53
+ +YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 54 GKTIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA- 110
GK K LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
EN + +L+GNK DL + V+ A+ A++ GIP+ ETSA + NVE++ + I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 171 NR 172
R
Sbjct: 185 KR 186
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 101/161 (62%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF D + + TIG F +TV + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RF ++ YYRG+ ++VYD+T Q+SF +K+W+ E+ + EN+ + GNKCDL+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V + AK +A+ IG +ETSAK+A N+E+ F ++ I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 10/199 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +TI+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++ ++Q + +R +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 190
Query: 189 IR-----GQPVNQKSGCCS 202
I+ QPV++ G CS
Sbjct: 191 IKLEKPQEQPVSE--GGCS 207
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +TI+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 6/170 (3%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+K++L GD+ VGKS L+R + + E+ +T+GVDF+++T+ DG+ LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL--- 125
RFR+I SY+R A G++++YDVT ++SF N+++W++ I+ A E V +LVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 ---TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
K V + A G F ETSAK +N+ +A + +A +K R
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR + YYRG+ I+VYD+T +E+F+ +K W+ E+ ++ ++ + GNKCDLT
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V AK +AD I F+ETSAK+A N+ + F+ ++ I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 109/161 (67%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF+ +W++++ +V +LVGNK DL+
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 188
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++ ++Q + +R +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 193
Query: 189 IR-----GQPVNQKSGCC 201
I+ QPV++ GC
Sbjct: 194 IKLEKPQEQPVSE-GGCL 210
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR + YYRG+ I+VYD+T +E+F+ +K W+ E+ ++ ++ + GNKCDLT
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V AK +AD I F+ETSAK+A N+ + F+ ++ I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 110/171 (64%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 179
+ VS E + A E+ + F+ETSAK+ NV+Q F +AA++ ++Q S
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 177
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 140 bits (352), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 107/161 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + +VVYD+T+ SF +W++++ +V +LVGNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ ++ E + A E+ + F+ETSAK+ NV+Q F +A+++
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 11/177 (6%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKL 59
M++ + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF + V DG K +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK--- 116
Q+WDTAGQERF+++ ++YRGA ++VYDVT+ SF N+K W +E +A NVN
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPET 118
Query: 117 ---LLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAAS 168
+++GNK D + K+VS ++A+ A +G IP TSAK+A NV+ AF +A S
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 101/160 (63%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+G F + + GK + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
+ VS + A+++A+ +G TSAK +E+ F+ +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 100/160 (62%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+ F + + GK + L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
+ VS + A+++A+ +G TSAK +E+ F+ +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 101/163 (61%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+ F + + GK + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ VS + A+++A+ +G TSAK +E+ F+ + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 101/161 (62%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+ +G+ VGK+ ++ RF D++ +Y STIG+DF +T+ D ++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
RFR++ SY R + IVVYD+T+++SF N +W+ +I ++V LVGNK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V+YE A E F ETSAK+ N++ F A+ +
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+G++ VGKS ++LRF + + E+ TIG F + V + T+K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT--- 126
F ++ YYR A +VVYDVT +SF + W+ E+ AS+++ LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+ V+ E + A+E G+ F ETSAK+ NV F+ + I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M + L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
IWDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS EN
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
+++GNK DL N+ V+ + A+A+ + IP+ ETSAK A NVEQAF +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
D++ + VS E A+A+ + G P+ ETSAK ATNV AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
D++ + VS E A+A+ + G P+ ETSAK ATNV AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M + L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
IWDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS EN
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
+++GNK DL N+ V+ + A+A+ + IP+ ETSAK A NVEQAF +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
D+ + VS E A+A+ + G P+ ETSAK +TNV AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M + L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
IWDTAGQERF+++ ++YRGA ++V+DVT +F + W +E AS EN
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
+++GNK D N+ V+ + A+A+ + IP+ ETSAK A NVEQAF +A
Sbjct: 121 VVLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
M + L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNK 116
IWDTAG ERF+++ ++YRGA ++V+DVT +F + W +E AS EN
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKSATNVEQAFMAMA 166
+++GNK DL N+ V+ + A+A+ + IP+ ETSAK A NVEQAF +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++L+GD GVGKS L+ R+ + + TIGV+F R +E DG+ + LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 123
ERF+++ + +YRGA ++ + V D++SF N+ W E YA E+ +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
D ++ V+ E A+ + E G P++ETSAK TNV AF
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ VS E AK AD+ + ++ETSAK+ NV++ F + I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ VS E AK A++ + ++ETSAK+ NV++ F + I+ R
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 125
E + I +Y+R G ++V+ +T+ ESF ++ +I R +E + L+VGNK DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
+ V E A++ A+E G+ ++ETSAK+ NV++ F + I+ + S+
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 125
E + I +Y+R G ++V+ +T+ ESF ++ +I R +E + L+VGNK DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
+ V E A++ A+E G+ ++ETSAK+ NV++ F + I+ + S+
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ VS E AK A++ + ++ETSAK+ NV++ F + I+ R
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ VS E AK A++ + ++ETSAK+ NV++ F + I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K++++G+ VGKS ++ R+ + + Y TIGVDF R ++ + + ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
F IT +YYRGA ++V+ TD+ESF + W ++ ++ LV NK DL +
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
+ E A+ A + + F TS K NV + F +A
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ V A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 126
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ VS E AK A++ + ++ETSAK+ NV++ F + I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNKCDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
++ V + A+ A GIPF+ETSAK+ V+ AF + I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
++ V + A+ A GIPF+ETSAK+ V+ AF + I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-----ASNNAR 183
KV + F + + + + SAKS N E+ F+ +A ++A P AS
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNPQLEFVASPALA 185
Query: 184 PPTVQIRGQ 192
PP VQ+ Q
Sbjct: 186 PPEVQVDEQ 194
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+F + Y + G +VY +T Q +FN+++ +I R +E+V +LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASI 169
+VV E + A + F+E+SAKS NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y+ T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y+ T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASI 169
+VV E + A + F+E+SAKS NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F +++ Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+F + Y + G +VY +T Q +FN+++ +I R +E+V +LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASI 169
+VV E + A + F+E+SAKS NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+ +DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGNKCDL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASI 169
+VV E + A + F+E+SAKS NV + F + I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
++ + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + Y++T+GV+ + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
KV + F + + + + SAKS N E+ F+ +A ++A P
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNP 167
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
KV + F + + + + SAKS N E+ F+ +A ++A P
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNP 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + ++E Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 21 KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
KS L ++F +++E Y TI DF + +E D L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAF 139
G I+VY + +Q+SF ++K ++I R E V +LVGNK DL + + VS +A
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 140 ADEIGIPFMETSAKSATNVEQAF 162
A+E G PFMETSAKS T V++ F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+F + YY A I+++DVT + ++ NV W ++ R EN+ +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
KV + + F + + + + SAKS N E+ F+ +A +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 130 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
K++++GD GK+ L FA +++ + Y TIG+DF +R + G + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD 124
+ Y GA G+++VYD+T+ +SF N++ W + + + E+ + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
L + + E F E G SAK+ +V F +AA I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGN+CDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y +I ++ + V DG+T L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 129 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y +I ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQ 176
+
Sbjct: 187 KK 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
+
Sbjct: 185 KK 186
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGK+ L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 187
Query: 175 SQ 176
+
Sbjct: 188 KK 189
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ + TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQ 176
+
Sbjct: 187 KK 188
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + +
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 40/198 (20%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE----------------- 51
+K +L+G+S VGKS ++LR D++ E+ +TIG F V
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 52 --------------------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91
++ IK IWDTAGQER+ +I YYRGA IVV+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151
+ + + K W+N++ S N +LV NK D +V E K +A + + F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQVDILEVQK-YAQDNNLLFIQTS 184
Query: 152 AKSATNVEQAFMAMAASI 169
AK+ TN++ F +A I
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 128
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 16/171 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++L+GD G GK+ LL+ FAD ++ ESY T+ + + ++ GK + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + +Y A +++ +DVT SF+N+ +W E++ + + V ++VG K DL +
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153
Query: 129 K------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMA 166
K V+Y + A +G + ++E SA+ NV F A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + V +S N+ ++W+ E+ + NV +LV NK DL ++
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ V E A+ + + ++E SAK+ V + F A A+++ R
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204
Query: 175 SQ 176
SQ
Sbjct: 205 SQ 206
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNKCDL +
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
+ V + A+ A GIPF+ETSAK+ V+ AF + I+
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R S++V +LVGNKCDL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170
+ V + A A GIPF+ETSAK+ VE AF + I+
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 1/179 (0%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
+K+ LIGD GVGK+ + R D + ++Y +T+G V+ + ++ G IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127
E+ + YY GA G I+ +DVT + + N+ +W+ E ++ NK D+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPT 186
+ +S + + E SAK+A N F+ +A R SN PT
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
+
Sbjct: 185 KK 186
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+++ + G GVGKS L+LRF ++ ESYI T+ ++ + + D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLT 126
+F + H I+VY +T ++S +K +I E++ +LVGNKCD +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175
++ V A+A A FMETSAK NV++ F + K R S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIKNRMA 174
+ E AK A+ IG +ME SAK+ V + F MA A+++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQ 176
+
Sbjct: 185 KK 186
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 22/203 (10%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + + + YI T+ +F V DG+ + L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 127 ANK--------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
+K V++ + +IG ++E S+K+ NV+ F +IK + QP
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF---DTAIK--VVLQP 181
Query: 178 ASNNARPPTVQIRGQPVNQKSGC 200
P R + +++SGC
Sbjct: 182 PRRKEVP-----RRRKNHRRSGC 199
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK + + ++E SAK+ V + F MA A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK + + ++E SAK+ V + F MA A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
++ V + A+ A GIPF+ETSAK+ V+ AF + I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
++ V + A+ A GIPF+ETSAK+ V+ AF + I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ + E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASI 169
+ E AK A+ IG +ME SAK+ V + F MA A++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG T+ L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMA 164
+K ++ + IG P ++E S+K+ NV+ F A
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTA 127
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
V S + A+ A GIP++ETSAK+ VE AF + I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+CLL+ + +++ Y+ T+ +F V +G T+ L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR 125
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMAMAASIKNRMAS 175
+K ++ + IG P ++E S+KS NV+ F A R+
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI-----RVVL 180
Query: 176 QP 177
QP
Sbjct: 181 QP 182
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 124
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKSATNVEQAF-MAMAASIKNR 172
+ E AK + + ++E SAK+ V + F MA A ++ R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVR 182
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
Query: 21 KSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
KS L ++F ++ Y TI + KI +V DG +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSV--DGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKA 138
HG ++V+ + D++SFN V + +I R ++ +LVGNK DL + + V A A
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 139 FADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
F + + E SAK NV++AF + +++
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKSATNVEQAF-MAMAASIK 170
+ E AK A+ IG +ME SAK+ V + F MA A+++
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL + G +GVGKS L++RF ++ Y T+ ++ + D + + ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 70 FRTIT-SSYYRGAHGIIVVYDVTDQESFNNV---KQWLNEIDRYASENVNKLLVGNKCDL 125
TI + R G ++VYD+TD+ SF V K L+EI + +NV +LVGNK DL
Sbjct: 89 --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNRMASQ 176
++ VS E + A E+ F E SA + N+ + F + ++ R Q
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG T+ L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
E + + YRGA ++ + + + S+ N+ K+WL E+ YA + +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLR 123
Query: 127 ANK--------VVSYETAKA--FADEIG-IPFMETSAKSATNVEQAF 162
+K S TA+ IG + ++E S+K+ NV+ F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+ K +++GD VGK+CLL+ +A+D++ E Y+ T+ D +V GK L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL- 125
E + + Y ++ + V + SF NVK +W+ E+ YA NV LL+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 126 -----------TANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
K + E + A EIG ++E SA + ++ F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
+V+SYE KA A+ F+E+SAK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAK 151
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
+V+SYE KA A+ F+E+SAK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAK 151
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 60
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 61 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
+V+SYE KA A+ F+E+SAK
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAK 146
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 21 KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
KS L ++F ++ Y TI + + V D + +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAF 139
G ++V+ VTD+ SF + ++ +I R + +L+GNK DL + V+ E +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 140 ADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171
A ++ + +ME SAK NV+QAF + I+
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+K ++Y A A EIG + ++E SA + ++ F +I+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
P R
Sbjct: 179 PPPVKKRKR 187
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F +++ Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
F + Y R G ++VY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
+ V+ + K A + IP++ETSAK NV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F +++ Y TI ++ T E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
F + Y R G ++VY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
+ V+ + K A + IP++ETSAK NV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
F + Y R G ++VY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
+ V+ + K A + IP++ETSAK NV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+K ++Y A A EIG + ++E SA + ++ F +I+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
P R
Sbjct: 179 PPPVKKRKR 187
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
F + Y R G ++VY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFMAMAASIKNR 172
+ V+ + K A + IP++ETSAK NV++ F + I+ +
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ D V DGK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 16/169 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + + E Y+ T+ ++ + VE DG+ ++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y ++ +++ + + +S NV++ W+ E+ + + V +LVG K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-QGVPIILVGCKVDLRND 129
Query: 126 ---------TANKVVSYETAKAFADEIGIP-FMETSAKSATNVEQAFMA 164
+ V+ + ++ AD+IG + E SAK+ V + F A
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA 178
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ D V DGK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++S TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV--NGQEYHLQLVDTAGQD 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTA 127
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
+V+SYE KA A+ F+E+SAK
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAK 149
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ + LLVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ + LLVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 131
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ + LLVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+K ++Y A A EIG + ++E SA + ++ F +I+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
P R
Sbjct: 179 PPPVKKRKR 187
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+K ++Y A A EIG + ++E SA + ++ F +I+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
P R
Sbjct: 179 PPPVKKRKR 187
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + ++ YI T+ D V DGK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + SF NV+ +W E+ R+ N +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
E + + Y ++ + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
E + + Y ++ + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 126
E + + Y ++ + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+K ++Y A A EIG + ++E SA + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + S+ NV+ +W E+ R+ + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMA 174
+K ++Y A A EI + ++E SA + ++ F +I+ +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPASNNAR 183
QP R
Sbjct: 179 PQPTRQQKR 187
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +L+GD VGK+ L++ + + Y YI T +F V DG+ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
F + Y ++ + V SF NV ++W+ EI R +LVG + DL +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLRED 139
Query: 129 ------------KVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF-MAMAASIK 170
K V E AK A+EI ++E SA + N+++ F A+ A I+
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++V K+W EI + N LLVG K DL +
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
VSY+ A +IG ++E SA +S +V F + N+
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++V K+W EI + N LLVG K DL +
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 142
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
VSY+ A +IG ++E SA +S +V F + N+
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++V K+W EI + N LLVG K DL +
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNR 172
VSY+ A +IG ++E SA +S +V F + N+
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K++++G VGK+ L +F + + E Y T+ + KI T+ +D L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD--EFHLHLVDTAGQD 83
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTA 127
+ + S+ G HG ++VY VT SF ++ ++ + V +LVGNK DL+
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 128 NKVVSYETAKAFADEIGIPFMETSAK 153
+ V K A+ G FME+SA+
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSAR 169
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 21 KSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
KS L+LRF ++ ++YI TI ++ + + D LQI DT G +F +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANKVVSYETAKA 138
H I+V+ VT ++S + I + + E++ +LVGNKCD T +V + E A+A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQA 138
Query: 139 FADEIGIPFMETSAKSATNVEQAFMAM 165
A E FMETSAK NV++ F +
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 35/187 (18%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ D V DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RF---------RTITSSY-----YRG-----AHGIIVVYDVTDQESFNNVK-QWLNEIDR 108
+ +T+ +Y RG A ++ + + SF NV+ +W E+ R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 109 YASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKSA 155
+ N +LVG K DL +K ++Y A A EIG + ++E SA +
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 156 TNVEQAF 162
++ F
Sbjct: 184 RGLKTVF 190
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + S+ NV+ +W E+ R+ + +LVG K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
+K ++Y A A EI + ++E SA + ++ F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y ++ + + S+ NV+ +W E+ R+ + +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
+K ++Y A A EI + ++E SA + ++ F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 122
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 123
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 131
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
G+ + + + ++VY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
DL + VS +A A F+ETSA NV++ F + ++ R S+ N
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE--KNE 181
Query: 183 RPPTVQIRGQP 193
R Q R +
Sbjct: 182 RRLAYQKRKES 192
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
G+ + + + ++VY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 182
DL + VS +A A F+ETSA NV++ F + ++ R S+ N
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE--KNE 181
Query: 183 RPPTVQIRGQP 193
R Q R +
Sbjct: 182 RRLAYQKRKES 192
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 71
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL +
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
+SYE A A ++G ++E SA S ++ F + N+ +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 190
Query: 175 SQP 177
P
Sbjct: 191 PLP 193
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 70
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL +
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
+SYE A A ++G ++E SA S ++ F + N+ +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 189
Query: 175 SQP 177
P
Sbjct: 190 PLP 192
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 87
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN 128
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL +
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA-KSATNVEQAFMAMAASIKNRMA 174
+SYE A A ++G ++E SA S ++ F + N+ +
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206
Query: 175 SQP 177
P
Sbjct: 207 PLP 209
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L++++L+GD GVGK+ L FA + + +G D RT+ DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68 ERFRTITS--SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCD 124
E+ S S +G ++VY + D+ SF + + ++ R + +++V +LVGNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162
L + VS E +A A F+ETSA NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
G+ + + + ++VY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 177
DL + VS +A A F+ETSA NV++ F + ++ R S+
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYLESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 122
G+ + + + ++VY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
DL + VS +A A F+ETSA NV++ F + ++ R
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ + ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL-- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y + +++ + V ++ SF+N+ +W EI Y + +LVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRK 141
Query: 128 NKV--VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+ V+ + ++G + ++E S+ + + + F
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDL--- 125
+ + Y +V + V SF NVK+ W+ EI + + LLVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162
K ++ ETA+ A ++ + ++E SA + ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA 127
+ + Y + +++ + V ++ SF+N+ +W EI Y + +LVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRK 140
Query: 128 NKV--VSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162
+ V+ + ++G + ++E S+ + + + F
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
++K+LL+G GVGKS L F D E+ T R++ DG+ L ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
Q+ R + ++VY VTD+ SF + ++ R +++V +LVGNK
Sbjct: 62 WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 178
DL ++ VS + +A A F+ETSA NV+ F + I+ R S+ A
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
++K+LL+G GVGKS L F D E+ T R++ DG+ L ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
Q+ R + ++VY VTD+ SF + ++ R +++V +LVGNK
Sbjct: 62 WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176
DL ++ VS + +A A F+ETSA NV+ F + I+ R S+
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFA---DDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
++K+LL+G GVGKS L F D E+ T R++ DG+ L ++D
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 56
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
Q+ R + ++VY VTD+ SF + ++ R +++V +LVGNK
Sbjct: 57 WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
DL ++ VS + +A A F+ETSA NV+ F + I+ R
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 10 KLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIKLQIW--DTA 65
K+ ++G++ VGKS L+ F +L+ Y T GV+ + V T+ ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI-----DRYASENVNKLLVG 120
G + ++ S Y+ G + I+V+DV+ ESF + K W + DR + +LV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR--ERPLRAVLVA 139
Query: 121 NKCDLTANK-VVSYETAKAFADEIGIPFMETSA-KSATNVEQAFMAMAASI 169
NK DL + V + A+ +A + F + SA + + F+++A +
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R + + TIKL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTA 127
RFR++ Y RG I+ + D DQE K L N +D+ + + L++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R + + TIKL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTA 127
RFR++ Y RG I+ + D DQE K L N +D+ + + L++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R V + TIK IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDL 125
RFR++ Y RG + I+ + D D+E + L N +D+ + + L++GNK DL
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTI 57
+ D +FK++L+G+SGVGKS L F DS E + +I +++ +
Sbjct: 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLV 75
Query: 58 KLQIW---DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASEN 113
IW D G R + + ++V+ VTD+ SF+ V + L + +
Sbjct: 76 VYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130
Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173
+ +LVGNK DL ++ VS E + A + +ETSA N + F I+ R
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190
Query: 174 ASQPA 178
A
Sbjct: 191 GRNHA 195
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTIKLQIW 62
D +FK++L+G+SGVGKS L F D+ E S + +I +++ I IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGN 121
+ + + + ++V+ VTD+ SF+ V + L + ++ +LVGN
Sbjct: 70 EQGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 127
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
K DL ++ VS E + A + +ETSA N + F I+ R
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFAD---DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
+FK++L+G+SGVGKS L F D E S + +I +++ I IW+
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 123
+ + + ++V+ VTD+ SF+ V + L + ++ +LVGNK
Sbjct: 62 GDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172
DL ++ VS E + A + +ETSA N + F I+ R
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD GQ
Sbjct: 13 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 125
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD GQ
Sbjct: 14 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + + + I TIG F + TV+ K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 128 NKVVSYETAKAFADEI-GIPFM--ETSAKSATNVEQAFMAMAASIKN 171
+ T K I P+ T A S + + ++ S+KN
Sbjct: 116 AMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 162
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + + + I TIG F + TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDL 125
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + + + I TIG F + TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDL 125
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L +G GK+ +L + L ++TI V F + TV K +K +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
+ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIFANKQDL 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 220
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 277
Query: 125 L 125
L
Sbjct: 278 L 278
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 57
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 116
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 112
Query: 125 L 125
L
Sbjct: 113 L 113
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 67
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 71
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 128
Query: 125 L 125
L
Sbjct: 129 L 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 129
Query: 125 L 125
L
Sbjct: 130 L 130
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
++L++G GK+ +L + L ++TI V F + TV K +K +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 56
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 125
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 115
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 129
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 125
R YY +I V D D++ K L + E + K ++ NK D+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 115
Query: 126 TANKVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKNR 172
T A+ +G+P +TSA T +++A + ++K+R
Sbjct: 116 EQAM-----TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G GK+ +L + + + I TIG F + TVE + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVE--FRNISFTVWDVGGQDK 73
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCDL 125
R + YY G+I V D D+E ++ ++ E+ R +E K L+ NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDARE---ELHRMINEEELKDAIILVFANKQDL 130
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA 127
R R + Y++ G+I V D D+E V L ++ + LL NK DL
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 128 NKVVSYETAK 137
+S T K
Sbjct: 133 AMAISEMTDK 142
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTA 127
+ R + YY+ II V D D++ ++ L + ++ N L+ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 128 NKVVSYETAK 137
+S T K
Sbjct: 133 AMSISEVTEK 142
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
L ++G G GKS L ++F ++ Y + + D + + L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE---NVNKLLVGNKCDLTA 127
R Y AH +VVY V ++SF++ +L + +A E ++ LL+GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 128 NKVVSYETAKAFADEIGIPFMETSA 152
+ V+ A A G F E SA
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSA 166
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGLD 57
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 114
Query: 125 L 125
L
Sbjct: 115 L 115
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+ +LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCD 124
+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK D
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQD 113
Query: 125 L 125
L
Sbjct: 114 L 114
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D++ + +E+ R +E+ + L+ NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQD 132
Query: 125 L 125
L
Sbjct: 133 L 133
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 124
+ R + Y++ G+I V D D+E V++ +E+ + E+ + L+ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRE---RVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 125 LTANKVVSYETAK 137
+ VS T K
Sbjct: 142 MPNAMPVSELTDK 154
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 10 KLLLIGDSGVGKSCLL--LRFADDSYLESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
KL ++G++G GK+ LL L S L +T+G+D K I+ ++ + + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 124 DLTANK 129
D++ K
Sbjct: 121 DVSDEK 126
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 10 KLLLIGDSGVGKSCLL--LRFADDSYLESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
KL ++G++G GK+ LL L S L +T+G+D K I+ ++ + + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 123
AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 124 DLTANK 129
D++ K
Sbjct: 123 DVSDEK 128
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 125
R YY +I V D D++ K L + E + K ++ NK D+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 117
Query: 126 TANKVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKN 171
T+ A+ +G+P +TSA T +++A + ++K+
Sbjct: 118 EQAM-----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D ++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 69
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
GQ + R SY+ +I V D D++ F Q
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + + + I TIG F + V+ I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
R R++ YY G+I V D D+ ++ + R +E N L+ NK D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE---VMQRMLNEDELCNAAWLVFANKQD 129
Query: 125 L 125
L
Sbjct: 130 L 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D ++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 68
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
GQ + R SY+ +I V D D++ F Q
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
R SY+ +I V D D++ F Q
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 20 GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+ R+ +Y+
Sbjct: 30 GKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 80 GAHGIIVVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 125
G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTAN 128
R YY +I V D D++ K L L+V NK D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 129 KVVSYETAKAFADEIGIP--------FMETSAKSATNVEQAFMAMAASIKNR 172
T+ A+ +G+P +TSA T +++A + ++K+R
Sbjct: 124 X-----TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F + + + TIG + + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD-- 124
R+ ++YY II+V D D+E K+ L + A E++ K L+ NK D
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM--LAHEDLRKAAVLIFANKQDMK 130
Query: 125 --LTANKVVSYETAKAFADE 142
+TA ++ Y T + D
Sbjct: 131 GCMTAAEISKYLTLSSIKDH 150
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
R+ ++YY +IVV D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 134
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + + + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
R+ ++YY +IVV D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 135
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
R SY+ +I V D D++ F Q
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + TIG F + T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN 104
R YY +I V D TD++ + + L+
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
R+ ++YY +IVV D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDL 125
R+ ++YY +IVV D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L ++GD+ GKS L+ RF SY + T +K + + DG+T + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVGNKCDL 125
+ + A +I V+ + D+ SF V + ++ E L LVG + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+A+ +VV A+A AD + ET A NV++ F +A +
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L ++GD+ GKS L+ RF SY + T +K + + DG+T + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVGNKCDL 125
+ + A +I V+ + D+ SF V + ++ E L LVG + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKSATNVEQAFMAMAASI 169
+A+ +VV A+A AD + ET A NV++ F +A +
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHEQ 91
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDLT 126
R + +Y +GI+ + D D K LN + D S NV L++GNK D T
Sbjct: 92 ARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETIS-NVPILILGNKIDRT 149
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G+ GKS L+ R+ +Y++ S G FK + + DG++ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDLT 126
+ + ++ V+ + D+ SF V + + R ASE V +LVG + ++
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-VPMVLVGTQDAIS 132
Query: 127 A--NKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169
A +V+ A+ + ++ + ET A NVE+ F +A +
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 78
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 79 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 134
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 137
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGGIQ 72
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 124
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 73 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 128
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF------KIRTVEQDG--KTIKLQ 60
K+ LIGD GK+ LL + +++ T G++ I+ +E D K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
WD GQE + ++ + ++ + D + +N WL I++Y ++ ++V
Sbjct: 102 FWDFGGQEIMHA-SHQFFMTRSSVYML--LLDSRTDSNKHYWLRHIEKYGGKS-PVIVVM 157
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169
NK D + + + I F S K+ VE ++ +++
Sbjct: 158 NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L+++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 11 LLLIGDSGVGKSCLLLRF-ADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
+L +G GK+ ++ + ++ ++ + TIG F I + ++ ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFK--SSSLSFTVFDMSGQGR 79
Query: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNKCDL 125
+R + YY+ II V D +D+ K+ L+ + + + L NK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L ++G+SG+GKS L+ F D Y E IS T+ ++ +E+ G +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIIS 101
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 145
V+ D+ D ++ ++ + E N +LV NK DL K + K E+G+
Sbjct: 84 VIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKK-MRKELGV 140
Query: 146 PFMETSAKSATNVEQAFMAMAASIKNRMASQP--------ASNNARPPTVQIRGQPVNQK 197
P + T+AK VE+ +A + ++ + P + + +RG P+ +K
Sbjct: 141 PVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRGTPLAEK 200
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L+++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 64 RLTVVDTPGYGDAINCRDCFKTIIS 88
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L ++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 339
Query: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
LQ+W GQ R + + GA V++D N+
Sbjct: 340 LQVW---GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 376
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
K I ++WD GQ R Y+ +I V D TD++ K
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH 110
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 40 TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
T V + + T E+ + ++D G ++FR + +YY +I V D +D V
Sbjct: 48 TATVGYNVETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV 105
Query: 100 KQWLNEIDRYASENVNKLLVGN 121
K + + ++ E++ + L G
Sbjct: 106 KSEIQAMLKH--EDIRRELPGG 125
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYI-------STIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 90 LTIVDTPG 97
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 10 KLLLIGDSGVGKSCLL-LRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
KLLL+G SG GKS + + F++ S ++ +D + + G + L +WD GQ+
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD 66
Query: 69 -----RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW---LNEIDRYASE 112
F ++ +I V+DV E +++ + L ++ +Y+ +
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD 118
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYI-------STIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLL-LRFADDSYLESYI-------STIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 67 LTIVDTPG 74
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 148 M 148
M
Sbjct: 182 M 182
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 148 M 148
M
Sbjct: 182 M 182
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 148 M 148
M
Sbjct: 182 M 182
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 148 M 148
M
Sbjct: 182 M 182
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 148 M 148
M
Sbjct: 159 M 159
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 148 M 148
M
Sbjct: 159 M 159
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 93 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TANKVVSYETAKAFADEIGIPF 147
+E + L +D + + V K DL T + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 148 M 148
M
Sbjct: 159 M 159
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 68 ERFRTITSS--YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN 113
E+ R +S Y +G HG+ + Q ++ WLNEI Y +N
Sbjct: 247 EKLRQAFTSIQYRQGFHGLNIFAYTAXQSAYTECNDWLNEIRFYIEDN 294
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 46 KIRTVEQDGKTIKLQIWDTAGQ-----ERFRTITSSYYRGAHGIIVVYDV 90
++ V++ GK + Q+W++AG +RF + + GA I+ YD+
Sbjct: 79 RMSYVQRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDL 128
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 46 KIRTVEQDGKTIKLQIWDTAGQ-----ERFRTITSSYYRGAHGIIVVYDV 90
++ V++ GK + Q+W++AG +RF + + GA I+ YD+
Sbjct: 79 RMSYVQRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDL 128
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 12 LLIGDSGVG-KSCLLLRFADDS---YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
++IG S +G K+ + + ADD ++ESY +GVD V+Q+G L +
Sbjct: 50 IVIGSSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSP 109
Query: 68 E 68
E
Sbjct: 110 E 110
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 86 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 139
Query: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
LQ+W GQ R + + GA V++D N+
Sbjct: 140 LQVW---GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 176
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 92 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 145
Query: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
LQ+W GQ R + + GA V++D N+
Sbjct: 146 LQVW---GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 182
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 91 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 144
Query: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
LQ+W GQ R + + GA V++D N+
Sbjct: 145 LQVW---GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 181
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAF----AD 141
+V + D FN WL + R+ N LLVGNK DL K V ++ K + A
Sbjct: 72 LVVKIVDIFDFNG--SWLPGLHRFVGNN-KVLLVGNKADLIP-KSVKHDKVKHWXRYSAK 127
Query: 142 EIGIP----FMETSAKSATNVEQA 161
++G+ F+ ++AK E A
Sbjct: 128 QLGLKPEDVFLISAAKGQGIAELA 151
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human
Grlf1 (P190rhogap)
Length = 255
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 15 GDSGVGKSCLLLRF----ADDSYLESYISTIGVDFKIRTVEQD 53
G G+GKSCL RF AD+ +L+ DF R V D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNND 77
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY 109
Y G H IV V ++E + NV +W I Y
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHY 152
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 183 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 232
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 124 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 183
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 184 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 233
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 131 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 190
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 191 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 240
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 122 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 181
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 182 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 231
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 117 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 176
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 177 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 226
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 135 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 194
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 195 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 244
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVN 115
+ F N KQ L E+ + S N+N
Sbjct: 183 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLN 212
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 183 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 232
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 117 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 176
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVN 115
+ F N KQ L E+ + S N+N
Sbjct: 177 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLN 206
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 183 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 232
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 131 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 190
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVN 115
+ F N KQ L E+ + S N+N
Sbjct: 191 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLN 220
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 27 RFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII- 85
R +SYL+ + + + T+EQ + + I G F T++SS Y II
Sbjct: 127 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 186
Query: 86 -VVYDVTDQESFNNVKQWLNEIDRYASENVNKL--------LVGNKCDLTA 127
+ F N KQ L E+ + S N+N L+ CDL +
Sbjct: 187 KAIIATDLALYFGNRKQ-LEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCS 236
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 73 ITSSYYRGAHGIIVVYDVTDQES--------FNNVKQWLNEIDRYASENVNKLLVGNKCD 124
+T S Y H + Y+V D + FNNV +DR V+ L+ G KCD
Sbjct: 285 MTGSVY--PHAWALQYEVNDLDGMAVAYSTMFNNVN-----LDRMTKYRVDSLVEG-KCD 336
Query: 125 ---------LTANKVVSYETAKAFADEIGIPF 147
++ YE + A+E G+P+
Sbjct: 337 GAFYHMNRSCKLMSLIQYEMQRRAAEETGLPY 368
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD 141
HG+ ++ V+ ++ + VK +++E+D+ S+ G + VV Y T K D
Sbjct: 28 HGLETLFTVSSEKMRSIVKHFISELDKGLSKK------GGNIPMIPGWVVEYPTGKETGD 81
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 9 FKLLLIGDSGVGKSCL--------LLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKL 59
F ++++G SG+GKS L + R A E I T+ + +E+ G +KL
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 60 QIWDTAG 66
+ DT G
Sbjct: 63 TVIDTPG 69
>pdb|3CVG|A Chain A, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|B Chain B, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|C Chain C, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
pdb|3CVG|D Chain D, Crystal Structure Of A Periplasmic Putative Metal Binding
Protein
Length = 294
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 30/165 (18%)
Query: 12 LLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
L IG+ G G+S L+ AD ++++S + + FK+ + D
Sbjct: 22 LRIGNGGAGQSGLVKELAD-AFIKSKVDSGSAPFKVAWYKSD-----------------T 63
Query: 72 TITSSYYR-GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG---NKCDLTA 127
T+T +Y + G + + Y + ++K ++E Y + + L+G N L+
Sbjct: 64 TVTINYLKDGIVDVGITYSPVAERI--SIKHGISESPSYYAFRDHFXLIGPPSNPAKLSG 121
Query: 128 NKVVS------YETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166
+ ++ ++ A+A + + F+ KSATN+++A + ++
Sbjct: 122 DSDIADXFSKXHDAAEAGNTKPPVRFLSRYDKSATNIKEAELWLS 166
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 100
++T+ RF+ I S R H + ++T+QE F ++
Sbjct: 20 FETSPNPRFKQIMQSLVRHLHDFVSEVELTEQEWFEGIR 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,538,423
Number of Sequences: 62578
Number of extensions: 201144
Number of successful extensions: 1520
Number of sequences better than 100.0: 402
Number of HSP's better than 100.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 408
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)