Query 028792
Match_columns 203
No_of_seqs 148 out of 1912
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.2E-44 9E-49 248.4 22.0 202 1-202 2-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 6.3E-41 1.4E-45 231.7 19.6 197 6-202 3-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 3.8E-39 8.3E-44 226.8 21.8 174 4-177 8-181 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-39 3.9E-44 224.7 19.0 169 6-174 20-189 (221)
5 KOG0080 GTPase Rab18, small G 100.0 1.4E-38 2.9E-43 213.5 18.1 199 4-202 7-208 (209)
6 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.9E-37 4E-42 226.7 22.8 171 9-179 1-177 (201)
7 cd04121 Rab40 Rab40 subfamily. 100.0 4.7E-37 1E-41 221.6 23.4 171 4-175 2-172 (189)
8 cd04120 Rab12 Rab12 subfamily. 100.0 6.2E-37 1.3E-41 222.9 24.2 164 9-172 1-165 (202)
9 PLN03110 Rab GTPase; Provision 100.0 9.5E-37 2.1E-41 225.0 25.0 172 4-175 8-179 (216)
10 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-36 2.3E-41 222.2 24.3 196 5-201 3-199 (199)
11 cd04126 Rab20 Rab20 subfamily. 100.0 4.3E-37 9.3E-42 226.1 21.9 187 9-201 1-220 (220)
12 KOG0394 Ras-related GTPase [Ge 100.0 2.5E-37 5.4E-42 212.0 17.8 175 1-175 1-183 (210)
13 KOG0098 GTPase Rab2, small G p 100.0 6.8E-37 1.5E-41 210.3 19.1 171 5-175 3-173 (216)
14 cd04112 Rab26 Rab26 subfamily. 100.0 3.2E-36 6.8E-41 218.5 22.9 190 9-201 1-191 (191)
15 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.4E-36 5.3E-41 211.8 19.7 175 2-176 8-182 (222)
16 cd04144 Ras2 Ras2 subfamily. 100.0 3.4E-36 7.4E-41 218.2 21.2 185 10-202 1-188 (190)
17 KOG0079 GTP-binding protein H- 100.0 3.8E-37 8.1E-42 203.9 14.0 171 2-173 2-172 (198)
18 KOG0086 GTPase Rab4, small G p 100.0 1.2E-36 2.5E-41 202.8 16.4 179 1-179 2-180 (214)
19 cd04111 Rab39 Rab39 subfamily. 100.0 1.7E-35 3.6E-40 217.5 24.2 171 7-177 1-173 (211)
20 PTZ00369 Ras-like protein; Pro 100.0 1.3E-35 2.7E-40 215.0 21.2 183 7-202 4-187 (189)
21 cd04122 Rab14 Rab14 subfamily. 100.0 2.2E-35 4.8E-40 209.6 21.6 164 8-171 2-165 (166)
22 cd04125 RabA_like RabA-like su 100.0 6.3E-35 1.4E-39 211.2 24.0 170 9-178 1-170 (188)
23 cd01867 Rab8_Rab10_Rab13_like 100.0 5.5E-35 1.2E-39 207.7 21.6 166 6-171 1-166 (167)
24 cd04109 Rab28 Rab28 subfamily. 100.0 1.3E-34 2.9E-39 213.6 22.8 164 9-172 1-168 (215)
25 cd04118 Rab24 Rab24 subfamily. 100.0 3.1E-34 6.8E-39 208.4 23.9 188 9-201 1-193 (193)
26 KOG0093 GTPase Rab3, small G p 100.0 2.6E-35 5.5E-40 195.0 15.8 173 3-175 16-188 (193)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-34 3.7E-39 206.0 21.3 165 8-173 2-167 (172)
28 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.1E-34 4.5E-39 204.5 21.5 164 7-170 1-164 (166)
29 cd04117 Rab15 Rab15 subfamily. 100.0 1.6E-34 3.4E-39 204.2 20.6 160 9-168 1-160 (161)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-34 3E-39 207.7 20.6 164 5-170 2-180 (182)
31 cd04127 Rab27A Rab27a subfamil 100.0 2.9E-34 6.2E-39 206.4 21.9 167 6-172 2-179 (180)
32 KOG0088 GTPase Rab21, small G 100.0 1.6E-35 3.5E-40 198.4 14.1 170 5-174 10-179 (218)
33 cd01865 Rab3 Rab3 subfamily. 100.0 4E-34 8.7E-39 202.9 22.0 162 9-170 2-163 (165)
34 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.6E-34 1.2E-38 210.7 23.1 169 4-174 9-192 (232)
35 cd04133 Rop_like Rop subfamily 100.0 2.6E-34 5.7E-39 205.1 20.3 160 9-170 2-173 (176)
36 cd01875 RhoG RhoG subfamily. 100.0 6.1E-34 1.3E-38 206.4 22.2 163 7-171 2-178 (191)
37 cd01868 Rab11_like Rab11-like. 100.0 6.5E-34 1.4E-38 201.7 21.6 164 6-169 1-164 (165)
38 KOG0091 GTPase Rab39, small G 100.0 1E-34 2.2E-39 195.4 16.3 201 2-202 2-213 (213)
39 cd01866 Rab2 Rab2 subfamily. 100.0 8.1E-34 1.8E-38 201.9 22.0 166 6-171 2-167 (168)
40 KOG0095 GTPase Rab30, small G 100.0 1.2E-34 2.5E-39 192.6 16.1 174 3-176 2-175 (213)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 6.9E-34 1.5E-38 201.9 21.0 162 9-170 1-167 (168)
42 cd04132 Rho4_like Rho4-like su 100.0 1E-33 2.3E-38 204.7 21.4 166 9-176 1-173 (187)
43 PLN03108 Rab family protein; P 100.0 4E-33 8.7E-38 204.9 24.7 169 6-174 4-172 (210)
44 cd04131 Rnd Rnd subfamily. Th 100.0 8.6E-34 1.9E-38 203.2 20.3 161 8-170 1-176 (178)
45 cd01864 Rab19 Rab19 subfamily. 100.0 1.5E-33 3.1E-38 200.0 21.1 163 6-168 1-164 (165)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-33 2.8E-38 203.0 21.1 164 9-173 1-169 (182)
47 PF00071 Ras: Ras family; Int 100.0 8.9E-34 1.9E-38 200.4 19.9 161 10-170 1-161 (162)
48 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.3E-33 5E-38 206.5 22.7 165 9-175 2-181 (222)
49 PLN03118 Rab family protein; P 100.0 4.8E-33 1E-37 204.8 24.2 172 3-175 9-182 (211)
50 cd04136 Rap_like Rap-like subf 100.0 2.2E-33 4.8E-38 198.5 20.0 160 9-169 2-162 (163)
51 cd04113 Rab4 Rab4 subfamily. 100.0 3.6E-33 7.8E-38 197.1 20.3 160 9-168 1-160 (161)
52 smart00175 RAB Rab subfamily o 100.0 6.3E-33 1.4E-37 196.3 21.3 163 9-171 1-163 (164)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 3.5E-33 7.6E-38 197.8 19.9 162 8-170 1-163 (164)
54 PLN03071 GTP-binding nuclear p 100.0 6E-33 1.3E-37 205.0 21.7 166 6-174 11-176 (219)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.7E-33 1E-37 199.1 19.9 160 8-169 1-174 (175)
56 cd04106 Rab23_lke Rab23-like s 100.0 7.9E-33 1.7E-37 195.5 20.2 159 9-168 1-161 (162)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.5E-32 3.2E-37 195.7 21.4 162 10-171 2-166 (170)
58 cd00877 Ran Ran (Ras-related n 100.0 1.3E-32 2.8E-37 195.3 20.7 160 9-171 1-160 (166)
59 cd04134 Rho3 Rho3 subfamily. 100.0 2.1E-32 4.5E-37 198.2 21.4 160 9-170 1-174 (189)
60 smart00173 RAS Ras subfamily o 100.0 1.4E-32 3.1E-37 194.7 20.1 161 9-170 1-162 (164)
61 cd04116 Rab9 Rab9 subfamily. 100.0 2.4E-32 5.2E-37 194.6 21.3 162 6-168 3-169 (170)
62 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-32 4.1E-37 193.4 20.5 160 9-168 1-160 (161)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.9E-32 6.2E-37 194.3 21.1 163 7-169 1-168 (170)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-32 3.6E-37 194.2 19.7 161 8-169 1-162 (163)
65 cd04124 RabL2 RabL2 subfamily. 100.0 2.9E-32 6.3E-37 192.6 20.8 161 9-173 1-161 (161)
66 cd01860 Rab5_related Rab5-rela 100.0 4.6E-32 1E-36 191.8 21.4 162 8-169 1-162 (163)
67 cd04140 ARHI_like ARHI subfami 100.0 2.9E-32 6.3E-37 193.3 20.2 159 9-168 2-163 (165)
68 cd01871 Rac1_like Rac1-like su 100.0 4.4E-32 9.6E-37 193.9 20.1 158 9-168 2-173 (174)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.5E-32 1.4E-36 190.6 20.5 160 8-169 1-161 (162)
70 cd04142 RRP22 RRP22 subfamily. 100.0 6.5E-32 1.4E-36 196.5 20.4 167 9-175 1-179 (198)
71 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9.4E-32 2E-36 190.3 20.6 161 8-169 2-163 (164)
72 cd04123 Rab21 Rab21 subfamily. 100.0 1.7E-31 3.6E-36 188.5 21.4 161 9-169 1-161 (162)
73 cd01862 Rab7 Rab7 subfamily. 100.0 3.8E-31 8.2E-36 188.6 21.8 165 9-173 1-170 (172)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.4E-31 5.2E-36 188.3 20.6 160 9-169 1-163 (164)
75 smart00176 RAN Ran (Ras-relate 100.0 3E-31 6.5E-36 192.8 20.9 156 14-172 1-156 (200)
76 KOG0081 GTPase Rab27, small G 100.0 1.9E-33 4.1E-38 188.6 8.0 175 3-177 4-188 (219)
77 cd04143 Rhes_like Rhes_like su 100.0 3.1E-31 6.8E-36 198.5 20.4 162 9-171 1-172 (247)
78 cd04114 Rab30 Rab30 subfamily. 100.0 9.7E-31 2.1E-35 186.1 21.8 165 5-169 4-168 (169)
79 KOG0097 GTPase Rab14, small G 100.0 4E-31 8.7E-36 174.4 17.8 174 4-177 7-180 (215)
80 cd01863 Rab18 Rab18 subfamily. 100.0 7.5E-31 1.6E-35 185.2 20.7 159 9-168 1-160 (161)
81 cd04148 RGK RGK subfamily. Th 100.0 6.7E-31 1.5E-35 194.3 21.2 167 9-177 1-170 (221)
82 smart00174 RHO Rho (Ras homolo 100.0 3.5E-31 7.5E-36 189.3 19.0 159 11-171 1-173 (174)
83 cd00154 Rab Rab family. Rab G 100.0 6.3E-31 1.4E-35 184.5 20.0 158 9-166 1-158 (159)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 8E-31 1.7E-35 186.5 20.4 161 9-170 2-164 (168)
85 cd01873 RhoBTB RhoBTB subfamil 100.0 8.4E-31 1.8E-35 190.0 19.6 158 8-168 2-194 (195)
86 cd04146 RERG_RasL11_like RERG/ 100.0 4.7E-31 1E-35 187.1 17.8 160 10-170 1-164 (165)
87 cd04103 Centaurin_gamma Centau 100.0 9.2E-31 2E-35 184.2 19.0 153 9-168 1-157 (158)
88 cd01892 Miro2 Miro2 subfamily. 100.0 6.4E-31 1.4E-35 187.1 18.3 162 7-170 3-166 (169)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.2E-30 4.9E-35 185.0 20.2 157 9-167 1-171 (173)
90 cd04139 RalA_RalB RalA/RalB su 100.0 4.4E-30 9.5E-35 181.7 20.7 162 9-171 1-163 (164)
91 cd04135 Tc10 TC10 subfamily. 100.0 3.4E-30 7.5E-35 184.1 20.2 159 9-169 1-173 (174)
92 cd00876 Ras Ras family. The R 100.0 7.7E-30 1.7E-34 179.6 19.4 158 10-168 1-159 (160)
93 cd04147 Ras_dva Ras-dva subfam 100.0 1.3E-29 2.8E-34 184.8 20.0 161 10-171 1-164 (198)
94 cd04137 RheB Rheb (Ras Homolog 100.0 3.3E-29 7.1E-34 180.1 21.6 165 9-174 2-167 (180)
95 cd04129 Rho2 Rho2 subfamily. 100.0 3.2E-29 7E-34 181.2 20.7 162 9-172 2-175 (187)
96 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.8E-31 4E-36 174.2 7.8 188 13-201 2-190 (192)
97 PLN00223 ADP-ribosylation fact 100.0 1.9E-29 4E-34 181.3 18.4 160 6-172 15-180 (181)
98 KOG0395 Ras-related GTPase [Ge 100.0 3E-29 6.4E-34 181.1 19.1 168 7-175 2-170 (196)
99 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-29 2.8E-34 180.2 16.6 154 7-167 8-167 (168)
100 cd04158 ARD1 ARD1 subfamily. 100.0 2.4E-29 5.3E-34 179.0 17.8 155 10-171 1-162 (169)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.4E-29 7.5E-34 180.4 18.7 164 8-174 3-174 (183)
102 cd01870 RhoA_like RhoA-like su 100.0 9E-29 1.9E-33 177.0 20.5 159 9-169 2-174 (175)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.7E-30 5.9E-35 183.0 12.3 153 10-167 1-163 (164)
104 smart00177 ARF ARF-like small 100.0 4.8E-29 1E-33 178.4 17.7 157 6-169 11-173 (175)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.4E-29 3.1E-34 178.4 14.3 152 9-167 1-158 (159)
106 cd04154 Arl2 Arl2 subfamily. 100.0 9.2E-29 2E-33 176.7 17.6 156 5-167 11-172 (173)
107 PTZ00133 ADP-ribosylation fact 100.0 1.6E-28 3.4E-33 176.7 18.7 159 7-172 16-180 (182)
108 cd00157 Rho Rho (Ras homology) 100.0 2.9E-28 6.4E-33 173.5 19.5 157 9-167 1-170 (171)
109 PTZ00132 GTP-binding nuclear p 100.0 7.7E-28 1.7E-32 177.6 21.8 166 4-172 5-170 (215)
110 cd01893 Miro1 Miro1 subfamily. 100.0 3.9E-28 8.5E-33 172.3 18.2 160 9-171 1-165 (166)
111 PF00025 Arf: ADP-ribosylation 100.0 5.5E-28 1.2E-32 172.8 18.7 158 5-169 11-175 (175)
112 cd04157 Arl6 Arl6 subfamily. 100.0 6.9E-28 1.5E-32 170.2 16.2 152 10-167 1-161 (162)
113 cd04161 Arl2l1_Arl13_like Arl2 100.0 3E-28 6.4E-33 173.1 14.1 151 10-167 1-166 (167)
114 KOG0073 GTP-binding ADP-ribosy 100.0 2.6E-27 5.5E-32 159.8 17.2 164 5-173 13-181 (185)
115 KOG0393 Ras-related small GTPa 100.0 3.8E-28 8.3E-33 171.9 13.4 167 6-174 2-183 (198)
116 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.7E-27 5.9E-32 172.0 18.1 148 9-156 1-176 (202)
117 cd00879 Sar1 Sar1 subfamily. 100.0 1.9E-27 4.2E-32 172.3 17.3 156 6-168 17-189 (190)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2E-27 4.3E-32 169.9 16.9 154 7-167 14-173 (174)
119 PTZ00099 rab6; Provisional 100.0 1.4E-26 3E-31 165.4 19.4 145 31-175 3-147 (176)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.8E-27 3.8E-32 167.8 14.5 152 10-167 1-159 (160)
121 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.9E-27 8.5E-32 167.2 16.0 152 10-167 1-166 (167)
122 smart00178 SAR Sar1p-like memb 100.0 1.4E-26 3E-31 167.0 17.5 156 6-168 15-183 (184)
123 cd04151 Arl1 Arl1 subfamily. 100.0 2.1E-26 4.5E-31 162.1 17.6 151 10-167 1-157 (158)
124 cd00878 Arf_Arl Arf (ADP-ribos 100.0 6.3E-27 1.4E-31 164.7 14.9 151 10-167 1-157 (158)
125 KOG4252 GTP-binding protein [S 99.9 1.1E-28 2.3E-33 169.0 3.9 172 3-175 15-186 (246)
126 PRK12299 obgE GTPase CgtA; Rev 99.9 7.2E-26 1.6E-30 175.8 19.0 163 9-172 159-330 (335)
127 PLN00023 GTP-binding protein; 99.9 2.4E-25 5.1E-30 169.5 21.0 142 4-145 17-189 (334)
128 cd01897 NOG NOG1 is a nucleola 99.9 6.4E-26 1.4E-30 161.1 16.2 155 10-169 2-167 (168)
129 cd04159 Arl10_like Arl10-like 99.9 1.1E-25 2.4E-30 157.9 15.8 152 10-167 1-158 (159)
130 cd01898 Obg Obg subfamily. Th 99.9 1.1E-25 2.4E-30 160.1 15.1 157 10-168 2-169 (170)
131 cd04155 Arl3 Arl3 subfamily. 99.9 9.5E-25 2.1E-29 155.8 18.4 157 4-167 10-172 (173)
132 TIGR00231 small_GTP small GTP- 99.9 9.4E-25 2E-29 152.9 18.0 158 8-166 1-160 (161)
133 cd01890 LepA LepA subfamily. 99.9 4.3E-25 9.3E-30 158.4 16.5 154 10-169 2-176 (179)
134 cd01878 HflX HflX subfamily. 99.9 2.8E-25 6E-30 162.7 15.4 156 6-168 39-203 (204)
135 KOG0070 GTP-binding ADP-ribosy 99.9 4.4E-25 9.6E-30 152.7 14.2 159 6-171 15-179 (181)
136 cd04171 SelB SelB subfamily. 99.9 1.4E-24 3.1E-29 153.4 16.7 152 9-167 1-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 1.2E-24 2.6E-29 150.5 12.9 134 10-166 2-141 (142)
138 TIGR02729 Obg_CgtA Obg family 99.9 6.8E-24 1.5E-28 164.7 17.5 159 9-169 158-328 (329)
139 COG1100 GTPase SAR1 and relate 99.9 2.9E-23 6.3E-28 153.6 20.0 171 7-177 4-192 (219)
140 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-23 3.2E-28 145.6 17.3 153 13-166 1-156 (157)
141 PF02421 FeoB_N: Ferrous iron 99.9 1E-24 2.2E-29 150.9 11.0 148 9-165 1-156 (156)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.1E-24 1.3E-28 150.8 15.4 157 10-170 2-166 (168)
143 cd01879 FeoB Ferrous iron tran 99.9 7.7E-24 1.7E-28 148.8 15.7 147 13-168 1-155 (158)
144 KOG0071 GTP-binding ADP-ribosy 99.9 7.6E-24 1.6E-28 139.5 13.8 157 7-170 16-178 (180)
145 TIGR03156 GTP_HflX GTP-binding 99.9 2.1E-23 4.5E-28 163.4 17.6 155 6-168 187-350 (351)
146 PRK04213 GTP-binding protein; 99.9 3.3E-24 7.2E-29 156.7 11.5 155 4-171 5-193 (201)
147 KOG0075 GTP-binding ADP-ribosy 99.9 5.8E-24 1.3E-28 141.1 11.0 160 7-172 19-184 (186)
148 PRK12296 obgE GTPase CgtA; Rev 99.9 4.6E-23 9.9E-28 166.0 18.3 166 9-177 160-347 (500)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 1.3E-23 2.7E-28 152.8 13.2 159 9-171 3-189 (194)
150 cd01881 Obg_like The Obg-like 99.9 1.4E-23 3E-28 150.0 13.0 154 13-168 1-175 (176)
151 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.6E-28 171.4 14.1 168 6-179 209-391 (472)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.9E-23 2.2E-27 142.8 16.1 146 9-169 2-156 (157)
153 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.3E-27 161.0 19.1 160 9-173 159-330 (424)
154 PRK03003 GTP-binding protein D 99.9 6.8E-23 1.5E-27 167.0 17.0 179 7-198 37-225 (472)
155 TIGR00436 era GTP-binding prot 99.9 1.4E-22 2.9E-27 154.4 16.2 153 10-170 2-164 (270)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.7E-22 5.9E-27 161.3 18.1 154 7-174 202-364 (442)
157 TIGR03594 GTPase_EngA ribosome 99.9 9.5E-23 2.1E-27 164.9 15.6 166 6-178 170-352 (429)
158 PRK15494 era GTPase Era; Provi 99.9 3.1E-22 6.7E-27 156.5 17.1 156 6-171 50-217 (339)
159 cd00881 GTP_translation_factor 99.9 1.8E-22 4E-27 145.7 14.6 154 10-169 1-186 (189)
160 PRK05291 trmE tRNA modificatio 99.9 2E-22 4.3E-27 162.8 15.8 148 8-171 215-371 (449)
161 cd01889 SelB_euk SelB subfamil 99.9 2.1E-22 4.5E-27 146.2 14.1 157 9-169 1-185 (192)
162 PF08477 Miro: Miro-like prote 99.9 1.6E-22 3.5E-27 135.6 12.3 114 10-124 1-119 (119)
163 KOG3883 Ras family small GTPas 99.9 1.4E-21 3.1E-26 130.7 16.4 167 4-171 5-176 (198)
164 cd01894 EngA1 EngA1 subfamily. 99.9 2.7E-22 5.8E-27 140.7 13.7 146 12-168 1-156 (157)
165 PRK11058 GTPase HflX; Provisio 99.9 5.7E-22 1.2E-26 158.6 16.9 158 8-171 197-363 (426)
166 KOG1673 Ras GTPases [General f 99.9 4.8E-22 1E-26 133.3 13.3 173 6-179 18-195 (205)
167 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.2E-26 154.6 18.4 162 9-172 160-335 (390)
168 PRK15467 ethanolamine utilizat 99.9 6.2E-22 1.3E-26 139.2 14.3 142 10-173 3-150 (158)
169 TIGR00487 IF-2 translation ini 99.9 1.3E-21 2.7E-26 161.9 17.7 154 6-167 85-247 (587)
170 cd01895 EngA2 EngA2 subfamily. 99.9 1.8E-21 4E-26 138.4 16.1 155 8-168 2-173 (174)
171 PRK00454 engB GTP-binding prot 99.9 2.1E-21 4.6E-26 141.2 15.8 159 5-170 21-194 (196)
172 TIGR01393 lepA GTP-binding pro 99.9 3.1E-21 6.7E-26 160.2 17.4 157 8-170 3-180 (595)
173 TIGR03594 GTPase_EngA ribosome 99.9 2.7E-21 5.8E-26 156.5 15.6 176 10-198 1-186 (429)
174 TIGR03598 GTPase_YsxC ribosome 99.9 3.8E-21 8.2E-26 138.1 14.5 148 5-159 15-179 (179)
175 KOG4423 GTP-binding protein-li 99.9 8.2E-24 1.8E-28 145.8 0.5 192 4-195 21-219 (229)
176 PRK00093 GTP-binding protein D 99.9 3.7E-21 8E-26 155.9 16.0 174 9-198 2-187 (435)
177 PRK00089 era GTPase Era; Revie 99.9 6.2E-21 1.3E-25 147.0 16.3 158 7-170 4-171 (292)
178 COG1160 Predicted GTPases [Gen 99.9 2.8E-21 6E-26 151.2 14.1 179 9-199 4-193 (444)
179 PRK05306 infB translation init 99.9 6.9E-21 1.5E-25 161.1 17.5 155 5-168 287-450 (787)
180 TIGR00475 selB selenocysteine- 99.9 6.4E-21 1.4E-25 158.2 17.0 154 9-171 1-167 (581)
181 CHL00189 infB translation init 99.9 5.7E-21 1.2E-25 160.3 16.7 157 6-169 242-409 (742)
182 cd04105 SR_beta Signal recogni 99.9 1.1E-20 2.3E-25 138.1 16.1 118 10-128 2-124 (203)
183 cd01888 eIF2_gamma eIF2-gamma 99.9 5.4E-21 1.2E-25 139.8 14.4 159 9-169 1-198 (203)
184 PF00009 GTP_EFTU: Elongation 99.9 2.1E-21 4.6E-26 140.4 12.1 159 7-169 2-186 (188)
185 cd04163 Era Era subfamily. Er 99.9 1.1E-20 2.4E-25 133.4 15.4 156 8-168 3-167 (168)
186 PRK00093 GTP-binding protein D 99.9 4.3E-21 9.3E-26 155.5 14.2 164 6-177 171-351 (435)
187 KOG0076 GTP-binding ADP-ribosy 99.9 1.2E-21 2.6E-26 133.8 8.9 160 7-172 16-189 (197)
188 PRK09518 bifunctional cytidyla 99.9 1.2E-20 2.7E-25 160.4 16.8 165 7-179 449-630 (712)
189 PRK09518 bifunctional cytidyla 99.9 1.7E-20 3.8E-25 159.5 17.6 181 7-198 274-464 (712)
190 TIGR00437 feoB ferrous iron tr 99.9 9.9E-21 2.1E-25 157.3 15.3 146 15-169 1-154 (591)
191 KOG0072 GTP-binding ADP-ribosy 99.9 6.6E-22 1.4E-26 131.0 6.4 161 6-171 16-180 (182)
192 cd00880 Era_like Era (E. coli 99.9 2.1E-20 4.6E-25 130.8 13.1 151 13-168 1-162 (163)
193 KOG0074 GTP-binding ADP-ribosy 99.9 7.3E-21 1.6E-25 125.7 9.7 159 3-167 12-176 (185)
194 PRK09554 feoB ferrous iron tra 99.8 1.1E-19 2.3E-24 154.5 18.6 153 8-169 3-167 (772)
195 COG1159 Era GTPase [General fu 99.8 5.1E-20 1.1E-24 137.1 14.2 160 7-172 5-174 (298)
196 PRK05433 GTP-binding protein L 99.8 1.1E-19 2.5E-24 151.1 17.4 159 6-170 5-184 (600)
197 COG1160 Predicted GTPases [Gen 99.8 5.8E-20 1.3E-24 143.9 14.0 169 7-181 177-362 (444)
198 cd01896 DRG The developmentall 99.8 4.8E-19 1E-23 131.9 17.7 151 10-169 2-225 (233)
199 COG2229 Predicted GTPase [Gene 99.8 4.2E-19 9E-24 123.0 15.9 156 5-168 7-176 (187)
200 TIGR00491 aIF-2 translation in 99.8 2.1E-19 4.6E-24 148.5 16.4 158 7-171 3-217 (590)
201 COG0486 ThdF Predicted GTPase 99.8 2.2E-19 4.8E-24 141.0 15.5 152 9-172 218-378 (454)
202 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 6.9E-20 1.5E-24 126.9 9.5 162 7-171 9-170 (216)
203 TIGR00483 EF-1_alpha translati 99.8 3.2E-19 7E-24 144.0 14.4 154 6-163 5-200 (426)
204 cd01876 YihA_EngB The YihA (En 99.8 9.5E-19 2.1E-23 123.8 14.3 150 10-168 1-169 (170)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.7E-19 8E-24 130.6 12.4 147 10-161 1-185 (208)
206 PRK12317 elongation factor 1-a 99.8 5.3E-19 1.1E-23 142.7 14.3 153 7-163 5-198 (425)
207 PRK04004 translation initiatio 99.8 3.5E-18 7.6E-23 141.8 17.6 159 5-170 3-218 (586)
208 PRK04000 translation initiatio 99.8 1.2E-18 2.7E-23 139.5 14.2 166 2-169 3-200 (411)
209 PF10662 PduV-EutP: Ethanolami 99.8 1.4E-18 3.1E-23 117.7 12.2 135 10-166 3-142 (143)
210 TIGR03680 eif2g_arch translati 99.8 1E-18 2.2E-23 140.0 13.6 161 7-169 3-195 (406)
211 KOG1489 Predicted GTP-binding 99.8 1.7E-18 3.7E-23 129.4 13.5 155 10-168 198-365 (366)
212 PRK10512 selenocysteinyl-tRNA- 99.8 3E-18 6.4E-23 142.9 16.6 155 10-169 2-165 (614)
213 PRK10218 GTP-binding protein; 99.8 3.2E-18 7E-23 142.0 16.5 159 7-169 4-194 (607)
214 cd04168 TetM_like Tet(M)-like 99.8 3E-18 6.5E-23 127.8 14.6 112 10-127 1-130 (237)
215 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.9E-18 1.1E-22 123.0 15.2 146 8-159 2-172 (195)
216 TIGR01394 TypA_BipA GTP-bindin 99.8 2.8E-18 6.1E-23 142.4 15.6 155 10-170 3-191 (594)
217 cd01883 EF1_alpha Eukaryotic e 99.8 1.4E-18 2.9E-23 128.6 11.4 146 10-159 1-194 (219)
218 KOG1423 Ras-like GTPase ERA [C 99.8 4.5E-18 9.9E-23 126.6 13.9 163 4-170 68-271 (379)
219 COG1084 Predicted GTPase [Gene 99.8 1.6E-17 3.4E-22 125.1 15.7 163 3-171 163-337 (346)
220 COG0218 Predicted GTPase [Gene 99.8 1.9E-17 4.1E-22 117.2 14.9 161 4-171 20-198 (200)
221 COG0370 FeoB Fe2+ transport sy 99.8 9.2E-18 2E-22 137.2 14.6 155 8-171 3-165 (653)
222 COG0536 Obg Predicted GTPase [ 99.8 1.2E-17 2.6E-22 126.3 14.1 163 10-173 161-336 (369)
223 KOG1707 Predicted Ras related/ 99.8 2.4E-18 5.3E-23 137.5 9.3 168 5-174 6-179 (625)
224 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.6E-17 1.2E-21 119.9 15.2 152 10-167 1-220 (224)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.9E-17 4E-22 122.0 12.3 158 10-172 1-178 (232)
226 cd04167 Snu114p Snu114p subfam 99.8 2E-17 4.2E-22 121.9 12.4 113 10-126 2-136 (213)
227 PRK12736 elongation factor Tu; 99.8 4.4E-17 9.5E-22 130.2 15.3 145 6-156 10-179 (394)
228 COG2262 HflX GTPases [General 99.8 8.9E-17 1.9E-21 124.4 16.2 162 6-173 190-359 (411)
229 KOG0077 Vesicle coat complex C 99.7 8.3E-18 1.8E-22 114.2 8.7 155 7-168 19-191 (193)
230 TIGR00485 EF-Tu translation el 99.7 6.9E-17 1.5E-21 129.2 15.3 153 5-163 9-187 (394)
231 PRK12735 elongation factor Tu; 99.7 6.6E-17 1.4E-21 129.2 15.1 148 4-157 8-180 (396)
232 COG1163 DRG Predicted GTPase [ 99.7 2.8E-16 6E-21 118.1 16.5 156 7-171 62-290 (365)
233 cd01886 EF-G Elongation factor 99.7 1.2E-16 2.6E-21 121.3 14.4 112 10-127 1-130 (270)
234 CHL00071 tufA elongation facto 99.7 1.1E-16 2.4E-21 128.5 14.9 148 5-158 9-181 (409)
235 cd01850 CDC_Septin CDC/Septin. 99.7 2.3E-16 5E-21 120.1 15.4 145 7-155 3-187 (276)
236 cd04104 p47_IIGP_like p47 (47- 99.7 3.7E-16 7.9E-21 113.8 15.0 158 9-174 2-188 (197)
237 cd01885 EF2 EF2 (for archaea a 99.7 7.9E-17 1.7E-21 118.7 11.3 113 10-126 2-138 (222)
238 cd04169 RF3 RF3 subfamily. Pe 99.7 4.1E-16 8.9E-21 118.2 14.9 114 9-128 3-138 (267)
239 TIGR02034 CysN sulfate adenyly 99.7 2.2E-16 4.7E-21 126.6 13.3 148 9-161 1-188 (406)
240 PRK00049 elongation factor Tu; 99.7 9.2E-16 2E-20 122.6 16.0 147 5-157 9-180 (396)
241 COG3596 Predicted GTPase [Gene 99.7 1.3E-16 2.8E-21 117.6 10.1 162 7-173 38-225 (296)
242 PF01926 MMR_HSR1: 50S ribosom 99.7 6.6E-16 1.4E-20 103.0 12.5 106 10-122 1-116 (116)
243 PLN03126 Elongation factor Tu; 99.7 1E-15 2.2E-20 124.3 15.6 147 5-157 78-249 (478)
244 COG0532 InfB Translation initi 99.7 3.3E-15 7.1E-20 119.3 17.5 160 6-172 3-172 (509)
245 PRK00741 prfC peptide chain re 99.7 1.8E-15 3.8E-20 124.3 16.5 117 5-127 7-145 (526)
246 cd04170 EF-G_bact Elongation f 99.7 1.6E-15 3.6E-20 115.5 14.9 148 10-165 1-168 (268)
247 PLN03127 Elongation factor Tu; 99.7 1.4E-15 3.1E-20 122.8 15.3 157 6-168 59-250 (447)
248 PLN00043 elongation factor 1-a 99.7 9.5E-16 2.1E-20 123.9 14.2 148 7-160 6-203 (447)
249 PRK05124 cysN sulfate adenylyl 99.7 6E-16 1.3E-20 126.0 13.1 153 5-162 24-217 (474)
250 cd01899 Ygr210 Ygr210 subfamil 99.7 1.2E-15 2.7E-20 117.8 14.0 81 11-91 1-110 (318)
251 PTZ00141 elongation factor 1- 99.7 6.8E-16 1.5E-20 124.8 12.8 150 6-160 5-203 (446)
252 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.1E-14 4.5E-19 104.5 17.1 159 9-171 1-185 (196)
253 PRK13351 elongation factor G; 99.7 2.3E-15 4.9E-20 128.2 13.9 117 5-127 5-139 (687)
254 KOG1191 Mitochondrial GTPase [ 99.7 1E-15 2.2E-20 120.7 10.7 164 8-174 268-454 (531)
255 PF09439 SRPRB: Signal recogni 99.7 5.4E-16 1.2E-20 109.7 8.3 117 8-128 3-127 (181)
256 PRK05506 bifunctional sulfate 99.6 3.4E-15 7.4E-20 125.9 14.0 151 5-160 21-211 (632)
257 COG5256 TEF1 Translation elong 99.6 4.1E-15 8.9E-20 115.3 12.5 154 6-161 5-202 (428)
258 PRK12739 elongation factor G; 99.6 1.5E-14 3.3E-19 123.1 16.6 117 5-127 5-139 (691)
259 PTZ00327 eukaryotic translatio 99.6 6E-15 1.3E-19 119.1 13.2 161 7-169 33-232 (460)
260 TIGR00503 prfC peptide chain r 99.6 1.3E-14 2.9E-19 119.2 15.3 118 5-126 8-145 (527)
261 KOG1145 Mitochondrial translat 99.6 3.2E-14 7E-19 113.5 16.5 156 5-168 150-314 (683)
262 KOG0090 Signal recognition par 99.6 1.5E-14 3.4E-19 102.6 12.5 154 9-168 39-237 (238)
263 KOG0462 Elongation factor-type 99.6 1.3E-14 2.9E-19 115.6 12.6 161 5-169 57-234 (650)
264 PRK09602 translation-associate 99.6 5.4E-14 1.2E-18 111.9 15.7 83 9-91 2-113 (396)
265 TIGR00484 EF-G translation elo 99.6 3.9E-14 8.5E-19 120.6 15.2 118 5-128 7-142 (689)
266 PRK09866 hypothetical protein; 99.6 1.3E-13 2.9E-18 113.0 17.3 108 58-167 231-350 (741)
267 KOG1490 GTP-binding protein CR 99.6 1.6E-14 3.4E-19 114.2 10.8 171 2-175 162-346 (620)
268 COG4917 EutP Ethanolamine util 99.6 3.1E-14 6.7E-19 92.6 8.9 136 10-167 3-143 (148)
269 PRK12740 elongation factor G; 99.5 1.8E-13 3.8E-18 116.6 14.2 108 14-127 1-126 (668)
270 PRK00007 elongation factor G; 99.5 1.9E-13 4.1E-18 116.4 14.1 143 5-155 7-171 (693)
271 PTZ00258 GTP-binding protein; 99.5 4.2E-13 9E-18 105.9 13.8 86 6-91 19-126 (390)
272 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.4E-13 1.8E-17 100.6 14.7 129 2-133 32-173 (313)
273 COG0481 LepA Membrane GTPase L 99.5 2.6E-13 5.5E-18 106.9 12.1 159 6-170 7-186 (603)
274 PRK14845 translation initiatio 99.5 7.2E-13 1.6E-17 115.3 16.0 144 20-170 473-673 (1049)
275 cd00066 G-alpha G protein alph 99.5 8.8E-13 1.9E-17 102.5 14.7 118 56-173 160-314 (317)
276 cd01853 Toc34_like Toc34-like 99.5 1.1E-12 2.3E-17 98.4 13.2 123 4-129 27-165 (249)
277 COG2895 CysN GTPases - Sulfate 99.5 7.4E-13 1.6E-17 100.8 12.2 150 6-160 4-193 (431)
278 PF04548 AIG1: AIG1 family; I 99.5 2.6E-12 5.6E-17 94.5 14.7 161 9-173 1-189 (212)
279 TIGR00490 aEF-2 translation el 99.5 1.7E-13 3.6E-18 117.1 9.4 119 5-127 16-152 (720)
280 smart00275 G_alpha G protein a 99.5 2.1E-12 4.5E-17 101.3 14.5 123 49-173 178-337 (342)
281 TIGR00101 ureG urease accessor 99.5 4E-13 8.6E-18 97.7 9.8 101 58-169 93-195 (199)
282 PRK13768 GTPase; Provisional 99.5 1.1E-12 2.4E-17 98.9 11.8 112 58-169 98-246 (253)
283 TIGR00073 hypB hydrogenase acc 99.5 1.7E-12 3.7E-17 95.2 11.8 152 6-168 20-205 (207)
284 KOG1707 Predicted Ras related/ 99.4 6.1E-12 1.3E-16 101.4 14.7 165 4-173 421-586 (625)
285 smart00010 small_GTPase Small 99.4 3.4E-12 7.4E-17 85.7 11.2 114 9-159 1-115 (124)
286 PRK09601 GTP-binding protein Y 99.4 1.3E-11 2.8E-16 96.5 15.3 83 9-91 3-107 (364)
287 TIGR00157 ribosome small subun 99.4 1.5E-12 3.3E-17 97.6 9.9 95 68-166 24-119 (245)
288 COG1217 TypA Predicted membran 99.4 4.8E-12 1E-16 99.6 12.1 159 8-170 5-195 (603)
289 KOG3905 Dynein light intermedi 99.4 2E-11 4.4E-16 92.2 14.8 166 9-177 53-297 (473)
290 PF05783 DLIC: Dynein light in 99.4 2.1E-11 4.5E-16 98.6 16.0 166 7-175 24-269 (472)
291 PRK07560 elongation factor EF- 99.4 4E-12 8.7E-17 109.0 12.0 118 5-126 17-152 (731)
292 PF03029 ATP_bind_1: Conserved 99.4 6.2E-13 1.4E-17 99.1 6.2 112 58-169 92-236 (238)
293 PTZ00416 elongation factor 2; 99.4 2.1E-12 4.6E-17 111.8 10.2 118 5-126 16-157 (836)
294 PLN00116 translation elongatio 99.4 2.4E-12 5.1E-17 111.7 10.4 119 4-126 15-163 (843)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 1E-11 2.3E-16 92.1 12.4 140 7-158 38-184 (225)
296 PRK09435 membrane ATPase/prote 99.4 1.1E-11 2.3E-16 96.3 12.7 103 57-170 149-260 (332)
297 COG0378 HypB Ni2+-binding GTPa 99.4 4.5E-12 9.7E-17 89.4 9.5 78 83-169 120-200 (202)
298 KOG0458 Elongation factor 1 al 99.4 8.9E-12 1.9E-16 100.4 12.2 150 7-160 176-372 (603)
299 KOG1532 GTPase XAB1, interacts 99.4 9.8E-13 2.1E-17 97.1 5.2 117 57-176 116-270 (366)
300 cd01900 YchF YchF subfamily. 99.3 3.5E-11 7.6E-16 91.2 12.6 81 11-91 1-103 (274)
301 PF00350 Dynamin_N: Dynamin fa 99.3 4.5E-11 9.9E-16 84.7 12.3 62 59-123 103-168 (168)
302 KOG0461 Selenocysteine-specifi 99.3 5.5E-11 1.2E-15 90.6 13.1 160 7-170 6-193 (522)
303 KOG0082 G-protein alpha subuni 99.3 1E-10 2.2E-15 90.5 14.5 131 42-174 182-348 (354)
304 TIGR02836 spore_IV_A stage IV 99.3 1.1E-10 2.3E-15 91.8 14.6 143 6-153 15-218 (492)
305 PF00735 Septin: Septin; Inte 99.3 4.8E-11 1E-15 91.1 12.0 143 7-153 3-184 (281)
306 TIGR00750 lao LAO/AO transport 99.3 2E-11 4.4E-16 94.3 10.0 103 57-170 127-238 (300)
307 KOG3886 GTP-binding protein [S 99.3 5.4E-12 1.2E-16 90.9 6.1 145 8-154 4-163 (295)
308 PF05049 IIGP: Interferon-indu 99.3 4.9E-11 1.1E-15 93.4 10.9 159 6-173 33-221 (376)
309 KOG1144 Translation initiation 99.3 4.8E-11 1E-15 98.6 11.0 164 5-175 472-692 (1064)
310 KOG1486 GTP-binding protein DR 99.3 4.7E-10 1E-14 82.2 14.7 85 9-95 63-154 (364)
311 PRK10463 hydrogenase nickel in 99.2 3.5E-11 7.7E-16 91.2 8.6 55 114-168 231-287 (290)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 4.9E-10 1.1E-14 92.7 14.5 121 5-127 115-250 (763)
313 smart00053 DYNc Dynamin, GTPas 99.2 3.5E-10 7.7E-15 84.1 11.8 69 57-128 125-207 (240)
314 COG5257 GCD11 Translation init 99.2 1.4E-10 3E-15 87.7 9.1 163 6-170 8-202 (415)
315 KOG0705 GTPase-activating prot 99.2 8.4E-11 1.8E-15 94.3 8.4 162 7-175 29-194 (749)
316 KOG0410 Predicted GTP binding 99.2 6.4E-11 1.4E-15 89.5 6.1 156 8-174 178-345 (410)
317 COG0480 FusA Translation elong 99.2 4.6E-10 1E-14 94.7 11.8 119 5-128 7-143 (697)
318 COG3276 SelB Selenocysteine-sp 99.2 5.8E-10 1.3E-14 87.7 11.5 155 10-170 2-162 (447)
319 COG4108 PrfC Peptide chain rel 99.1 5.7E-10 1.2E-14 87.5 10.9 136 7-150 11-168 (528)
320 COG0012 Predicted GTPase, prob 99.1 2.5E-09 5.5E-14 82.9 14.3 84 8-91 2-108 (372)
321 KOG1954 Endocytosis/signaling 99.1 3.7E-10 8E-15 86.9 8.8 124 4-130 54-228 (532)
322 COG5019 CDC3 Septin family pro 99.1 3.4E-09 7.4E-14 81.7 14.0 147 6-158 21-207 (373)
323 cd01855 YqeH YqeH. YqeH is an 99.1 9.3E-10 2E-14 79.7 9.5 94 70-170 24-125 (190)
324 PF03308 ArgK: ArgK protein; 99.1 1.6E-10 3.4E-15 85.5 5.4 152 7-170 28-230 (266)
325 KOG2655 Septin family protein 99.1 4.8E-09 1E-13 81.4 13.6 146 6-155 19-202 (366)
326 KOG0468 U5 snRNP-specific prot 99.1 8.7E-10 1.9E-14 90.4 9.8 118 4-125 124-261 (971)
327 cd01859 MJ1464 MJ1464. This f 99.1 6.4E-10 1.4E-14 77.9 7.1 94 71-170 3-96 (156)
328 COG1703 ArgK Putative periplas 99.0 4.3E-09 9.3E-14 79.2 10.7 106 57-173 144-257 (323)
329 COG0050 TufB GTPases - transla 99.0 7E-09 1.5E-13 77.7 11.7 142 7-154 11-177 (394)
330 PRK12289 GTPase RsgA; Reviewed 98.9 6.1E-09 1.3E-13 81.9 9.5 91 72-167 81-172 (352)
331 KOG0448 Mitofusin 1 GTPase, in 98.9 2.1E-08 4.5E-13 82.7 12.6 145 6-154 107-310 (749)
332 KOG1547 Septin CDC10 and relat 98.9 1.4E-08 3E-13 74.1 10.0 145 6-155 44-228 (336)
333 cd01854 YjeQ_engC YjeQ/EngC. 98.9 7.8E-09 1.7E-13 79.5 9.1 89 74-167 72-161 (287)
334 KOG3887 Predicted small GTPase 98.9 9E-09 2E-13 75.1 8.3 161 7-170 26-202 (347)
335 PRK00098 GTPase RsgA; Reviewed 98.9 8.9E-09 1.9E-13 79.6 8.5 86 77-166 77-163 (298)
336 PRK12288 GTPase RsgA; Reviewed 98.9 2.3E-08 4.9E-13 78.6 10.2 88 77-167 117-205 (347)
337 KOG2486 Predicted GTPase [Gene 98.9 5.8E-09 1.3E-13 77.5 6.4 155 4-167 132-313 (320)
338 cd01856 YlqF YlqF. Proteins o 98.8 1.6E-08 3.5E-13 71.9 7.6 91 72-170 11-101 (171)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1E-08 2.2E-13 70.7 6.3 54 10-67 85-138 (141)
340 cd01849 YlqF_related_GTPase Yl 98.8 1.4E-08 3.1E-13 71.0 7.1 85 82-170 1-85 (155)
341 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.8E-08 4E-13 70.6 7.3 91 77-170 5-95 (157)
342 TIGR03597 GTPase_YqeH ribosome 98.8 3.9E-08 8.4E-13 78.0 9.8 95 67-168 50-151 (360)
343 cd04178 Nucleostemin_like Nucl 98.8 1.7E-08 3.7E-13 71.7 6.9 56 7-66 116-171 (172)
344 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.4E-08 5.1E-13 70.1 6.9 56 7-66 101-156 (157)
345 KOG1487 GTP-binding protein DR 98.8 9.5E-08 2.1E-12 70.6 10.1 89 9-99 60-155 (358)
346 TIGR00092 GTP-binding protein 98.8 2.4E-08 5.3E-13 78.4 7.5 83 9-91 3-108 (368)
347 KOG1491 Predicted GTP-binding 98.7 4.4E-08 9.5E-13 74.8 7.5 88 4-91 16-125 (391)
348 KOG0085 G protein subunit Galp 98.7 2.1E-08 4.5E-13 72.9 5.1 120 54-173 196-352 (359)
349 COG5258 GTPBP1 GTPase [General 98.7 3.7E-07 8.1E-12 71.0 12.1 157 5-165 114-334 (527)
350 cd01856 YlqF YlqF. Proteins o 98.7 6.1E-08 1.3E-12 69.0 6.9 58 6-67 113-170 (171)
351 PF03193 DUF258: Protein of un 98.7 4E-08 8.6E-13 68.5 4.9 58 10-70 37-100 (161)
352 TIGR03596 GTPase_YlqF ribosome 98.7 9.6E-08 2.1E-12 73.2 7.2 58 6-67 116-173 (276)
353 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.1E-07 2.5E-12 73.1 7.7 58 6-67 119-176 (287)
354 cd01855 YqeH YqeH. YqeH is an 98.6 5.8E-08 1.3E-12 70.3 5.7 56 8-66 127-189 (190)
355 TIGR03596 GTPase_YlqF ribosome 98.6 1.9E-07 4.2E-12 71.5 8.6 92 73-172 14-105 (276)
356 KOG0464 Elongation factor G [T 98.6 1.8E-08 3.8E-13 79.0 2.7 152 4-163 33-204 (753)
357 PF09547 Spore_IV_A: Stage IV 98.6 2.1E-06 4.6E-11 68.0 14.0 158 7-170 16-234 (492)
358 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 66.0 7.0 56 7-66 100-155 (156)
359 COG5192 BMS1 GTP-binding prote 98.6 5.4E-07 1.2E-11 73.4 11.0 140 3-154 64-210 (1077)
360 KOG1143 Predicted translation 98.6 6.9E-07 1.5E-11 69.4 10.7 156 6-165 165-383 (591)
361 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.5E-12 74.1 6.4 57 7-67 131-187 (322)
362 PRK10416 signal recognition pa 98.6 8.4E-08 1.8E-12 74.6 5.1 94 57-163 197-303 (318)
363 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.6E-07 5.6E-12 71.2 7.4 127 64-198 7-135 (287)
364 TIGR03348 VI_IcmF type VI secr 98.5 1.2E-06 2.6E-11 79.2 12.1 113 11-128 114-258 (1169)
365 cd01851 GBP Guanylate-binding 98.5 2.2E-06 4.8E-11 63.6 11.6 88 6-93 5-104 (224)
366 cd01849 YlqF_related_GTPase Yl 98.5 3E-07 6.6E-12 64.3 6.5 56 6-66 98-154 (155)
367 COG1618 Predicted nucleotide k 98.5 6.8E-06 1.5E-10 56.7 12.7 147 7-170 4-176 (179)
368 PRK12288 GTPase RsgA; Reviewed 98.5 2.9E-07 6.3E-12 72.4 6.5 57 11-70 208-270 (347)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 5.3E-07 1.1E-11 62.1 7.0 77 75-157 6-84 (141)
370 TIGR00064 ftsY signal recognit 98.5 2.2E-06 4.7E-11 65.4 10.8 95 57-164 155-262 (272)
371 KOG0460 Mitochondrial translat 98.5 1.3E-06 2.9E-11 67.0 9.0 142 7-153 53-218 (449)
372 KOG0465 Mitochondrial elongati 98.5 7E-07 1.5E-11 73.1 7.7 115 7-127 38-170 (721)
373 cd03112 CobW_like The function 98.5 1.5E-06 3.3E-11 61.0 8.5 21 11-31 3-23 (158)
374 COG1162 Predicted GTPases [Gen 98.4 3.9E-07 8.5E-12 69.3 5.5 57 10-69 166-228 (301)
375 PRK13796 GTPase YqeH; Provisio 98.4 2.6E-06 5.7E-11 67.8 10.3 92 69-168 58-157 (365)
376 KOG0467 Translation elongation 98.4 8.5E-07 1.8E-11 74.3 7.5 115 3-124 4-135 (887)
377 KOG4273 Uncharacterized conser 98.4 6.6E-06 1.4E-10 60.8 11.0 160 9-170 5-222 (418)
378 PRK14974 cell division protein 98.4 6.5E-07 1.4E-11 70.0 6.1 95 57-164 223-324 (336)
379 TIGR00157 ribosome small subun 98.4 6.8E-07 1.5E-11 67.2 6.0 56 10-69 122-183 (245)
380 PRK01889 GTPase RsgA; Reviewed 98.4 2.7E-06 5.8E-11 67.4 9.1 84 77-166 109-193 (356)
381 PRK12289 GTPase RsgA; Reviewed 98.4 9.1E-07 2E-11 69.7 6.1 56 11-69 175-236 (352)
382 KOG0447 Dynamin-like GTP bindi 98.4 3.5E-05 7.6E-10 62.9 15.0 106 58-167 413-537 (980)
383 PF00503 G-alpha: G-protein al 98.3 4.7E-06 1E-10 67.0 9.6 123 45-169 225-389 (389)
384 KOG0466 Translation initiation 98.3 1.1E-06 2.3E-11 66.6 4.8 111 58-170 126-241 (466)
385 PRK13796 GTPase YqeH; Provisio 98.3 1.6E-06 3.4E-11 69.0 5.6 57 9-68 161-221 (365)
386 TIGR03597 GTPase_YqeH ribosome 98.3 2E-06 4.3E-11 68.3 6.2 58 9-69 155-216 (360)
387 KOG1424 Predicted GTP-binding 98.3 1.1E-06 2.3E-11 70.8 4.6 56 8-67 314-369 (562)
388 KOG3859 Septins (P-loop GTPase 98.3 5.8E-06 1.3E-10 61.9 7.8 119 6-128 40-191 (406)
389 PRK13695 putative NTPase; Prov 98.2 4.3E-05 9.2E-10 54.5 11.7 80 77-169 93-172 (174)
390 KOG0459 Polypeptide release fa 98.2 3.6E-06 7.7E-11 66.0 6.0 156 6-163 77-279 (501)
391 TIGR01425 SRP54_euk signal rec 98.2 2.7E-05 5.8E-10 62.8 10.3 84 57-150 183-272 (429)
392 PRK11537 putative GTP-binding 98.2 3E-05 6.4E-10 60.6 10.3 85 57-151 91-186 (318)
393 PRK14722 flhF flagellar biosyn 98.1 4.7E-05 1E-09 60.4 11.2 139 9-151 138-315 (374)
394 COG1162 Predicted GTPases [Gen 98.1 3.3E-05 7.1E-10 59.0 9.8 94 71-167 70-164 (301)
395 PRK00098 GTPase RsgA; Reviewed 98.1 6.7E-06 1.4E-10 63.7 6.3 57 10-69 166-228 (298)
396 PF00448 SRP54: SRP54-type pro 98.1 3.2E-05 7E-10 56.2 9.4 84 57-151 84-174 (196)
397 COG3523 IcmF Type VI protein s 98.1 1.5E-05 3.1E-10 71.1 8.9 115 11-128 128-271 (1188)
398 COG0523 Putative GTPases (G3E 98.1 0.00014 3E-09 56.8 13.4 95 58-161 86-192 (323)
399 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.2E-06 1.3E-10 63.5 6.0 59 9-70 162-226 (287)
400 cd03115 SRP The signal recogni 98.1 4.7E-05 1E-09 54.2 9.8 83 57-149 83-171 (173)
401 KOG0463 GTP-binding protein GP 98.1 8E-05 1.7E-09 58.3 11.3 153 5-161 130-349 (641)
402 PF02492 cobW: CobW/HypB/UreG, 98.1 1E-05 2.2E-10 58.0 5.7 82 57-144 85-171 (178)
403 PF03266 NTPase_1: NTPase; In 98.0 2.7E-05 5.9E-10 55.1 6.9 135 10-158 1-163 (168)
404 cd03114 ArgK-like The function 98.0 2.9E-05 6.3E-10 53.8 6.9 58 56-124 91-148 (148)
405 KOG1534 Putative transcription 97.9 2.1E-05 4.6E-10 56.7 5.0 110 58-169 99-250 (273)
406 PF11111 CENP-M: Centromere pr 97.9 0.0015 3.2E-08 45.9 13.5 144 7-174 14-157 (176)
407 PRK12727 flagellar biosynthesi 97.9 0.00036 7.7E-09 57.7 12.1 90 57-158 429-523 (559)
408 KOG2484 GTPase [General functi 97.9 1.4E-05 3E-10 62.7 3.8 58 6-67 250-307 (435)
409 PRK14721 flhF flagellar biosyn 97.9 6.5E-05 1.4E-09 60.5 7.7 89 57-158 270-365 (420)
410 PRK00771 signal recognition pa 97.8 4.4E-05 9.6E-10 61.9 6.1 85 58-152 177-267 (437)
411 PRK11889 flhF flagellar biosyn 97.8 0.00041 8.9E-09 55.3 11.3 85 57-151 321-411 (436)
412 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00011 2.4E-09 41.7 5.9 45 79-124 12-58 (58)
413 KOG0099 G protein subunit Galp 97.8 0.00012 2.6E-09 54.6 7.6 126 45-172 192-371 (379)
414 PRK05703 flhF flagellar biosyn 97.8 7.5E-05 1.6E-09 60.6 6.7 90 57-158 300-396 (424)
415 PRK10867 signal recognition pa 97.7 0.00024 5.3E-09 57.6 8.9 86 57-152 184-275 (433)
416 COG1419 FlhF Flagellar GTP-bin 97.7 0.00051 1.1E-08 54.6 10.3 155 10-174 205-398 (407)
417 TIGR00959 ffh signal recogniti 97.7 0.00025 5.4E-09 57.5 8.7 86 57-152 183-274 (428)
418 KOG2485 Conserved ATP/GTP bind 97.7 7E-05 1.5E-09 57.1 5.2 60 6-67 141-206 (335)
419 cd02038 FleN-like FleN is a me 97.7 0.00019 4E-09 49.3 6.6 106 12-125 4-109 (139)
420 cd03111 CpaE_like This protein 97.7 0.00028 6.1E-09 46.0 7.1 102 12-122 3-106 (106)
421 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00036 7.8E-09 44.1 7.5 69 11-93 2-71 (99)
422 PRK14723 flhF flagellar biosyn 97.7 0.00034 7.4E-09 60.2 9.1 92 57-158 264-362 (767)
423 PRK12724 flagellar biosynthesi 97.7 0.00021 4.6E-09 57.4 7.4 132 9-151 224-393 (432)
424 cd00009 AAA The AAA+ (ATPases 97.6 0.00041 8.8E-09 47.2 7.9 24 9-32 20-43 (151)
425 cd02042 ParA ParA and ParB of 97.6 0.00033 7.1E-09 45.4 6.9 82 11-104 2-84 (104)
426 PRK12726 flagellar biosynthesi 97.6 0.00045 9.8E-09 54.8 8.4 86 57-152 286-377 (407)
427 TIGR02475 CobW cobalamin biosy 97.6 0.0018 4E-08 51.2 11.8 22 10-31 6-27 (341)
428 COG0563 Adk Adenylate kinase a 97.6 5.6E-05 1.2E-09 54.0 3.0 23 9-31 1-23 (178)
429 PF13207 AAA_17: AAA domain; P 97.6 6.4E-05 1.4E-09 50.0 3.0 22 10-31 1-22 (121)
430 PRK06995 flhF flagellar biosyn 97.6 0.00068 1.5E-08 55.7 9.3 89 57-158 335-430 (484)
431 PRK08118 topology modulation p 97.6 6.9E-05 1.5E-09 53.1 3.1 23 9-31 2-24 (167)
432 PRK12723 flagellar biosynthesi 97.5 0.0014 3E-08 52.5 10.5 90 57-158 255-351 (388)
433 PRK07261 topology modulation p 97.5 7.3E-05 1.6E-09 53.2 2.9 23 9-31 1-23 (171)
434 PF13671 AAA_33: AAA domain; P 97.5 8E-05 1.7E-09 51.1 2.9 20 11-30 2-21 (143)
435 PRK06731 flhF flagellar biosyn 97.5 0.0026 5.6E-08 48.6 11.0 133 9-151 76-245 (270)
436 PF03215 Rad17: Rad17 cell cyc 97.5 0.0012 2.5E-08 55.0 9.8 22 10-31 47-68 (519)
437 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.8E-09 42.3 2.9 21 10-30 25-45 (62)
438 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0032 6.9E-08 45.0 10.6 23 10-32 27-49 (177)
439 PF13521 AAA_28: AAA domain; P 97.5 8.3E-05 1.8E-09 52.4 2.4 22 10-31 1-22 (163)
440 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00064 1.4E-08 46.0 6.1 23 10-32 24-46 (133)
441 COG0194 Gmk Guanylate kinase [ 97.4 0.00011 2.3E-09 52.2 2.1 24 9-32 5-28 (191)
442 cd02019 NK Nucleoside/nucleoti 97.4 0.00018 3.9E-09 43.0 2.8 21 11-31 2-22 (69)
443 KOG2423 Nucleolar GTPase [Gene 97.4 7.4E-05 1.6E-09 58.8 1.3 84 5-95 304-389 (572)
444 PRK14737 gmk guanylate kinase; 97.3 0.00018 3.9E-09 51.8 3.1 24 9-32 5-28 (186)
445 cd04178 Nucleostemin_like Nucl 97.3 0.0005 1.1E-08 48.9 5.3 45 82-128 1-45 (172)
446 COG3640 CooC CO dehydrogenase 97.3 0.0013 2.7E-08 48.5 7.2 61 59-125 136-197 (255)
447 cd02036 MinD Bacterial cell di 97.3 0.01 2.3E-07 42.1 12.0 84 58-148 64-147 (179)
448 KOG1533 Predicted GTPase [Gene 97.3 0.00036 7.7E-09 51.3 4.1 68 58-127 98-177 (290)
449 PF00005 ABC_tran: ABC transpo 97.3 0.00024 5.3E-09 48.3 3.1 23 10-32 13-35 (137)
450 cd03110 Fer4_NifH_child This p 97.3 0.0036 7.8E-08 44.7 9.1 85 56-149 92-176 (179)
451 PRK06217 hypothetical protein; 97.3 0.00027 5.8E-09 50.8 3.1 23 9-31 2-24 (183)
452 COG1126 GlnQ ABC-type polar am 97.2 0.00035 7.5E-09 50.9 3.6 23 10-32 30-52 (240)
453 PF13238 AAA_18: AAA domain; P 97.2 0.00027 5.8E-09 47.4 2.8 21 11-31 1-21 (129)
454 PRK03839 putative kinase; Prov 97.2 0.00027 5.9E-09 50.6 3.0 22 10-31 2-23 (180)
455 KOG0469 Elongation factor 2 [T 97.2 0.0016 3.5E-08 53.1 7.5 128 9-140 20-178 (842)
456 cd00071 GMPK Guanosine monopho 97.2 0.0004 8.6E-09 47.5 3.5 21 11-31 2-22 (137)
457 PF00004 AAA: ATPase family as 97.2 0.00029 6.3E-09 47.4 2.8 21 11-31 1-21 (132)
458 PF02367 UPF0079: Uncharacteri 97.2 0.0011 2.3E-08 44.3 5.4 21 10-30 17-37 (123)
459 PRK14738 gmk guanylate kinase; 97.2 0.00043 9.3E-09 50.8 3.8 26 6-31 11-36 (206)
460 COG1136 SalX ABC-type antimicr 97.2 0.00041 8.8E-09 51.2 3.6 23 10-32 33-55 (226)
461 smart00382 AAA ATPases associa 97.2 0.00036 7.8E-09 47.0 3.2 26 9-34 3-28 (148)
462 cd01131 PilT Pilus retraction 97.2 0.0016 3.5E-08 47.4 6.7 22 11-32 4-25 (198)
463 PRK10646 ADP-binding protein; 97.2 0.0027 5.8E-08 44.1 7.2 22 10-31 30-51 (153)
464 PRK14530 adenylate kinase; Pro 97.2 0.00037 7.9E-09 51.5 3.1 22 9-30 4-25 (215)
465 COG1161 Predicted GTPases [Gen 97.1 0.001 2.2E-08 52.1 5.5 95 63-164 16-111 (322)
466 PRK10078 ribose 1,5-bisphospho 97.1 0.00039 8.5E-09 50.1 2.9 22 10-31 4-25 (186)
467 PRK04195 replication factor C 97.1 0.011 2.5E-07 49.0 11.8 24 9-32 40-63 (482)
468 PF03205 MobB: Molybdopterin g 97.1 0.00044 9.4E-09 47.5 2.9 22 10-31 2-23 (140)
469 COG0802 Predicted ATPase or ki 97.1 0.002 4.4E-08 44.2 6.1 23 10-32 27-49 (149)
470 TIGR02322 phosphon_PhnN phosph 97.1 0.00042 9E-09 49.5 2.9 22 10-31 3-24 (179)
471 PRK01889 GTPase RsgA; Reviewed 97.1 0.00057 1.2E-08 54.3 3.9 23 10-32 197-219 (356)
472 PRK14531 adenylate kinase; Pro 97.1 0.00044 9.6E-09 49.7 3.0 23 8-30 2-24 (183)
473 KOG3347 Predicted nucleotide k 97.1 0.00036 7.8E-09 47.7 2.3 25 6-30 5-29 (176)
474 PRK10751 molybdopterin-guanine 97.1 0.00062 1.3E-08 48.3 3.6 25 7-31 5-29 (173)
475 PRK14532 adenylate kinase; Pro 97.1 0.00046 9.9E-09 49.8 2.9 22 9-30 1-22 (188)
476 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.00045 9.8E-09 51.8 2.9 21 10-30 32-52 (254)
477 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00045 9.8E-09 49.6 2.9 21 9-29 4-24 (188)
478 KOG0446 Vacuolar sorting prote 97.1 0.00027 5.9E-09 60.2 1.9 70 57-128 132-214 (657)
479 PF04665 Pox_A32: Poxvirus A32 97.1 0.00051 1.1E-08 51.3 3.1 25 7-31 12-36 (241)
480 PRK13949 shikimate kinase; Pro 97.1 0.00054 1.2E-08 48.6 3.1 21 10-30 3-23 (169)
481 cd01130 VirB11-like_ATPase Typ 97.1 0.00054 1.2E-08 49.4 3.1 23 9-31 26-48 (186)
482 TIGR03263 guanyl_kin guanylate 97.1 0.00052 1.1E-08 49.1 2.9 22 10-31 3-24 (180)
483 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00054 1.2E-08 44.5 2.7 20 10-29 17-36 (107)
484 PRK00625 shikimate kinase; Pro 97.0 0.00054 1.2E-08 48.8 3.0 22 9-30 1-22 (173)
485 PF05621 TniB: Bacterial TniB 97.0 0.0049 1.1E-07 47.4 8.3 106 4-123 57-190 (302)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.013 2.9E-07 40.3 9.8 23 10-32 28-50 (144)
487 TIGR00235 udk uridine kinase. 97.0 0.0007 1.5E-08 49.6 3.5 25 7-31 5-29 (207)
488 COG1120 FepC ABC-type cobalami 97.0 0.00054 1.2E-08 51.6 2.9 20 11-30 31-50 (258)
489 COG1936 Predicted nucleotide k 97.0 0.00056 1.2E-08 48.0 2.8 21 9-29 1-21 (180)
490 cd03238 ABC_UvrA The excision 97.0 0.00064 1.4E-08 48.5 3.1 21 10-30 23-43 (176)
491 PF07728 AAA_5: AAA domain (dy 97.0 0.00066 1.4E-08 46.4 3.1 21 10-30 1-21 (139)
492 COG1116 TauB ABC-type nitrate/ 97.0 0.00079 1.7E-08 50.0 3.6 22 11-32 32-53 (248)
493 KOG3929 Uncharacterized conser 97.0 0.00039 8.5E-09 51.8 1.8 87 6-95 43-134 (363)
494 PRK02496 adk adenylate kinase; 97.0 0.00071 1.5E-08 48.6 3.1 22 9-30 2-23 (184)
495 KOG0780 Signal recognition par 97.0 0.0023 4.9E-08 50.6 5.9 23 7-29 100-122 (483)
496 KOG1970 Checkpoint RAD17-RFC c 97.0 0.0077 1.7E-07 49.7 9.1 21 10-30 112-132 (634)
497 PTZ00088 adenylate kinase 1; P 97.0 0.00069 1.5E-08 50.5 3.0 23 8-30 6-28 (229)
498 COG0552 FtsY Signal recognitio 96.9 0.0013 2.9E-08 50.9 4.5 144 6-162 137-327 (340)
499 cd02023 UMPK Uridine monophosp 96.9 0.00066 1.4E-08 49.4 2.7 21 11-31 2-22 (198)
500 PRK08233 hypothetical protein; 96.9 0.00085 1.8E-08 47.9 3.2 24 8-31 3-26 (182)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-44 Score=248.40 Aligned_cols=202 Identities=72% Similarity=1.164 Sum_probs=184.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...+|.|||+++|..|+|||.|+.++..+.+...+.+|++.++..+.+.++++.++++||||+|+++++.....++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-EEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 159 (203)
++++|+|||+++.+||..+..|+.++.++...+.|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.+++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999999988999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCC-CCCCCC
Q 028792 160 QAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQ-KSGCCS 202 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (203)
++|..|...+.++.......+.......+..++|.++ .++||+
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence 9999999999988887776654444444444455544 455775
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-41 Score=231.74 Aligned_cols=197 Identities=45% Similarity=0.747 Sum_probs=174.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+++|..++|||||+.++..+.+.+...+|++..+....+..++..++|.||||+|+++|.++...++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|||+++.+||..++.|+..+.....++.-+.+++||+|+.+.+.+..+++..++...+..++++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998888778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCccc-cCCCCCCCCCCCCC
Q 028792 166 AASIKNRMASQPASNNARPPTVQ-IRGQPVNQKSGCCS 202 (203)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 202 (203)
.+.+.....+......+++...- ...++....++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 99998766655543222111111 11125667889997
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-39 Score=226.77 Aligned_cols=174 Identities=62% Similarity=1.067 Sum_probs=167.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+++|.++||||+++.++..+.+...+..|++.++....+..++..+.+++|||.|++++......+++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||+++..+|+.+..|+..+..+...+.|.++|+||+|+...+.++.+..+.++..+++.++++||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 028792 164 AMAASIKNRMASQP 177 (203)
Q Consensus 164 ~l~~~~~~~~~~~~ 177 (203)
.|.+.++++.....
T Consensus 168 ~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 168 SLARDILQKLEDAE 181 (207)
T ss_pred HHHHHHHhhcchhh
Confidence 99999997655543
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=224.68 Aligned_cols=169 Identities=41% Similarity=0.704 Sum_probs=159.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
-+.+|++++|..++||||||.++..+.+...|.+|++.++....+.+.+.++++++|||.|+++++.+...+++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASE-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|||+++..+|+....|++.++..... +.-+++|+||.||.+.+++..++....++++++.|+++||+.|+||..+|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999888775 4778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028792 165 MAASIKNRMA 174 (203)
Q Consensus 165 l~~~~~~~~~ 174 (203)
+...+.+...
T Consensus 180 Iaa~l~~~~~ 189 (221)
T KOG0094|consen 180 IAAALPGMEV 189 (221)
T ss_pred HHHhccCccc
Confidence 8877766544
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=213.54 Aligned_cols=199 Identities=45% Similarity=0.761 Sum_probs=174.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+++|..|+|||||+.++..+.+.+....|++.++....+.+++..+++.||||+|+++++.+...+++.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+|+|||++.+++|..+..|+.++..+.. ++.-.++|+||+|....+.++.++...|++++++.++++||++.+|+...|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999999999999988865 456668899999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCccccCCCCC--CCCCCCCC
Q 028792 163 MAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCCS 202 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 202 (203)
+.|+..+.+-..--...+......+..++..+ -.+++||.
T Consensus 167 eelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs 208 (209)
T KOG0080|consen 167 EELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS 208 (209)
T ss_pred HHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence 99999998755544444444444444444433 33466774
No 6
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-37 Score=226.67 Aligned_cols=171 Identities=39% Similarity=0.689 Sum_probs=151.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+..+ +..+.+.+||+||++++..++..++.++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888877777777 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 162 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 162 (203)
||++++++|+.+..|+..+.... ..+.|+++|+||.|+.+......+++.+++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 2468999999999997666778888999999998 689999999999999999
Q ss_pred HHHHHHHHHHhccCCCC
Q 028792 163 MAMAASIKNRMASQPAS 179 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~~~ 179 (203)
.+|.+.+.+.....+.+
T Consensus 161 ~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 161 RFLVKNILANDKNLQQA 177 (201)
T ss_pred HHHHHHHHHhchhhHhh
Confidence 99999998776554433
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.7e-37 Score=221.58 Aligned_cols=171 Identities=43% Similarity=0.740 Sum_probs=156.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+++|..|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++.++|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35688999999999999999999999988887777888888877888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||++++++|+.+..|++.+.... .+.|++||+||.|+...+.+..+++..+++.+++++++|||++|.|++++|+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997665 4799999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028792 164 AMAASIKNRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+..+..+
T Consensus 161 ~l~~~i~~~~~~ 172 (189)
T cd04121 161 ELARIVLMRHGR 172 (189)
T ss_pred HHHHHHHHhcCC
Confidence 999988765553
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.2e-37 Score=222.92 Aligned_cols=164 Identities=49% Similarity=0.894 Sum_probs=151.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888889888888888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++..++++.+ ++.+++|||++|.|++++|.+|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766567999999999999877888888888888875 789999999999999999999999
Q ss_pred HHHHH
Q 028792 168 SIKNR 172 (203)
Q Consensus 168 ~~~~~ 172 (203)
.+.+.
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88765
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=9.5e-37 Score=224.97 Aligned_cols=172 Identities=51% Similarity=0.849 Sum_probs=156.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|+.++..++..++..+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45688999999999999999999999998887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999987777788888888888899999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028792 164 AMAASIKNRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+.+....
T Consensus 168 ~l~~~i~~~~~~ 179 (216)
T PLN03110 168 TILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHhhc
Confidence 999988775443
No 10
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.1e-36 Score=222.22 Aligned_cols=196 Identities=56% Similarity=0.887 Sum_probs=165.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+++|++|+|||||+++|.+..+...+.+|.+.++....+..++..+.+.+||+||++.+..++..++.++|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999988888888888788777888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|||+++++++..+..|+..+..... ..|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|.+
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 999999999999999999998876554 6899999999999876677778888888888999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCccccCC-CCCCCCCCCC
Q 028792 165 MAASIKNRMASQPASNNARPPTVQIRG-QPVNQKSGCC 201 (203)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 201 (203)
|...+.......-.............. +..++++.||
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 162 ITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 999998765555443333333333333 3336677777
No 11
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=4.3e-37 Score=226.12 Aligned_cols=187 Identities=34% Similarity=0.547 Sum_probs=155.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|..+.+.. +.++.+..+..... ..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 45666655443332 3478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA-------------------NKVVSYETAKAFADEIG----- 144 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 144 (203)
|++++++|..+..|+..+......+.|+++|+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988777665555789999999999975 46778889999998876
Q ss_pred ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792 145 ---------IPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 201 (203)
Q Consensus 145 ---------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
++|++|||++|.||+++|..+.+.+.....++... .++..-....+.|+++|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAE-ANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhh-hhhhhccccCCCcccCCCCCC
Confidence 68999999999999999999999988766665543 233345556777899999999
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=212.04 Aligned_cols=175 Identities=39% Similarity=0.705 Sum_probs=160.7
Q ss_pred CCC-CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc
Q 028792 1 MNN-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (203)
Q Consensus 1 ~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (203)
|.. .....+||+++|.+|+|||||++++.+.++...+..|++.++..+.+.+++..+.++||||+|++++.++...|++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 455 4467799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcC-CCEEEEec
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTAN--KVVSYETAKAFADEIG-IPFMETSA 152 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (203)
++|.+++|||++++.+|+.+..|..++..... ..-|+||++||+|+... +.++...+++|+...+ ++||++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999876654 45799999999998763 7889999999999886 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q 028792 153 KSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
+++.++.++|..+.+.+++....
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cccccHHHHHHHHHHHHHhccch
Confidence 99999999999999998876654
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-37 Score=210.28 Aligned_cols=171 Identities=55% Similarity=0.902 Sum_probs=163.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
+.+.+|++++|+.|+|||+|+.++....+.+.+..|++.++....+.++++.+++++||+.|++.+.+....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|||++.+++|..+..|+..++....++..+++++||+|+...+.++.++.++|+++++..++++||++++|++|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028792 165 MAASIKNRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
....+......
T Consensus 163 ta~~Iy~~~q~ 173 (216)
T KOG0098|consen 163 TAKEIYRKIQD 173 (216)
T ss_pred HHHHHHHHHHh
Confidence 98888875444
No 14
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.2e-36 Score=218.51 Aligned_cols=190 Identities=48% Similarity=0.898 Sum_probs=160.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.+||+||+.++...+..++..+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888754 5667777677766777888889999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
+|++++++++.+..|+..+......+.|+++++||.|+...+.+..++...++..++++++++||++|+|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776667899999999999766667778888888888999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792 168 SIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 201 (203)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
.+.+.....+...+ .. ...-.+..+++++||
T Consensus 161 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGK-FK--ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCc-EE--eccccCcccccCCCC
Confidence 99877655443322 12 333334556778887
No 15
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-36 Score=211.78 Aligned_cols=175 Identities=53% Similarity=0.843 Sum_probs=167.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
+++.+|.|||+++|++++|||-|+.++..+++.....+|++.++....+.++++.++.+||||.|+++|+.....+++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
.++++|||++...+|+.+..|+.+++.+...++++++|+||+||..-+.+..++...++++.+..++++||.++.+++++
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999989999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 028792 162 FMAMAASIKNRMASQ 176 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~ 176 (203)
|..++..+.+..++.
T Consensus 168 F~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888765554
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.4e-36 Score=218.17 Aligned_cols=185 Identities=32% Similarity=0.580 Sum_probs=153.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777776444 3445677878889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
++++++++.+..|+..+..... .+.|+++|+||+|+.....+..++...++..++++++++||++|.|++++|.++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 4689999999999977677777778888888899999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCCC
Q 028792 167 ASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 202 (203)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
+.+.+++.... ++ ....+.+++++.+|||
T Consensus 160 ~~l~~~~~~~~------~~-~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQ------GP-KGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccC------CC-cCCCCCcccccccCce
Confidence 98876655432 22 3334455556666766
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=203.92 Aligned_cols=171 Identities=63% Similarity=0.980 Sum_probs=162.9
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
--+.+..++.+|+|++|+|||+|+.++..+.+..+|..|++.++..+++.++|..+++.|||+.|+++++.+...+++..
T Consensus 2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
+++|+|||+++.+||.+...|++.+....+ ..|-++|+||.|.++.+.+..+++..|+...++.+|++||+++++++.+
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAM 160 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHH
Confidence 999999999999999999999999988877 5888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028792 162 FMAMAASIKNRM 173 (203)
Q Consensus 162 ~~~l~~~~~~~~ 173 (203)
|.-|.+++++..
T Consensus 161 F~cit~qvl~~k 172 (198)
T KOG0079|consen 161 FHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=202.76 Aligned_cols=179 Identities=49% Similarity=0.832 Sum_probs=170.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|++.+++.+|++++|+.|+|||.|+++++...+......|++.++....+.+.++.++++|||+.|++++++..+.+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+.+.++|||++++++|..+..|+..++....+++-+++++||.|+.+.+++...++.+|++...+.+.++||++|++++|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 028792 161 AFMAMAASIKNRMASQPAS 179 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~ 179 (203)
.|-.....++.+.+..+..
T Consensus 162 aFl~c~~tIl~kIE~GElD 180 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGELD 180 (214)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 9999999998877665543
No 19
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-35 Score=217.53 Aligned_cols=171 Identities=46% Similarity=0.793 Sum_probs=152.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.. ++..+.+.+||++|++++...+..++.++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999888888888888877777766 466789999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|||++++++++.+..|+..+..... ...|+++|+||.|+.....+..++..++++.++++++++||++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 45778999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 028792 165 MAASIKNRMASQP 177 (203)
Q Consensus 165 l~~~~~~~~~~~~ 177 (203)
|.+.+.++..+.+
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999988766654
No 20
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=215.01 Aligned_cols=183 Identities=34% Similarity=0.625 Sum_probs=154.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 469999999999999999999999888777777776554 4566678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|||++++++++.+..|+..+..... .+.|+++++||.|+.+...+..++...++..++++++++||++|.|++++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988866543 478999999999987666677777888888888999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCCC
Q 028792 166 AASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 202 (203)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
.+.+.+...... ..+.++++.|.||
T Consensus 163 ~~~l~~~~~~~~------------~~~~~~~~~~~~~ 187 (189)
T PTZ00369 163 VREIRKYLKEDM------------PSQKQKKKGGLCL 187 (189)
T ss_pred HHHHHHHhhccc------------hhhhhhccCCeee
Confidence 998876544332 2234455666676
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.2e-35 Score=209.57 Aligned_cols=164 Identities=50% Similarity=0.890 Sum_probs=150.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++.++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999998888888888888777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
||++++++++.+..|+..+......+.|+++|+||+|+.....+..+++.++++..+++++++||++|.|++++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776667899999999999887778888899999999999999999999999999999998
Q ss_pred HHHH
Q 028792 168 SIKN 171 (203)
Q Consensus 168 ~~~~ 171 (203)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7753
No 22
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.3e-35 Score=211.22 Aligned_cols=170 Identities=61% Similarity=0.953 Sum_probs=153.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|...+...+..++.++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777888888887778888888899999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+........|+++++||.|+.+...+..++...++...+++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766668999999999998777777888888888889999999999999999999999999
Q ss_pred HHHHhccCCC
Q 028792 169 IKNRMASQPA 178 (203)
Q Consensus 169 ~~~~~~~~~~ 178 (203)
+..+....+.
T Consensus 161 ~~~~~~~~~~ 170 (188)
T cd04125 161 IIKRLEEQEL 170 (188)
T ss_pred HHHHhhcCcC
Confidence 9876655443
No 23
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.5e-35 Score=207.71 Aligned_cols=166 Identities=67% Similarity=1.128 Sum_probs=151.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999998888888888887778888888899999999999999888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|||+++++++..+..|+..+......+.|+++++||+|+.+......++...++..++.+++++||++|.|++++|.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887665678999999999998766677788888999889999999999999999999999
Q ss_pred HHHHHH
Q 028792 166 AASIKN 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
No 24
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.3e-34 Score=213.57 Aligned_cols=164 Identities=35% Similarity=0.594 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||++|+..+..++..++.++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889998888887777754 568999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+.+..++..++++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877643 34689999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028792 165 MAASIKNR 172 (203)
Q Consensus 165 l~~~~~~~ 172 (203)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 25
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.1e-34 Score=208.42 Aligned_cols=188 Identities=33% Similarity=0.620 Sum_probs=152.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+..++..+.+.+||++|..++...+..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5667777777777888888889999999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN----KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ..+..+++.+++...+++++++||++|+|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887653 36899999999998643 34455677888888889999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792 164 AMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 201 (203)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
+|.+.+.+......... +... ...++.+..++||
T Consensus 160 ~i~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~ 193 (193)
T cd04118 160 KVAEDFVSRANNQMNTE-KGVD---LGQKKNSYFYSCC 193 (193)
T ss_pred HHHHHHHHhcccccCCC-Cccc---cCCcCCCCCCCCC
Confidence 99999876554332222 1111 2223335777787
No 26
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-35 Score=195.01 Aligned_cols=173 Identities=51% Similarity=0.962 Sum_probs=164.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
...++.+|++++|...+|||||+.++..+.+.+.+.+|.+.++..+++-...+.+++++|||.|+++|+.+...++++++
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 36788899999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++|+|||+++.++|..++.|.-.+..+...+.|+|+++||+|+.+++.++.+....++..+|..+|++||+.+.++..+|
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028792 163 MAMAASIKNRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
+.+...+-+.++.
T Consensus 176 e~lv~~Ic~kmse 188 (193)
T KOG0093|consen 176 ERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988776654
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.7e-34 Score=206.04 Aligned_cols=165 Identities=32% Similarity=0.552 Sum_probs=146.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.++|+++|.+|+|||||++++..+.++..+.++.+..+ ...+..++..+.+.+||+||+.++..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999998887777776444 34566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.++.++...+++..++++++|||++|.|++++|.+|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999998887766533 5799999999999987777888889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 028792 167 ASIKNRM 173 (203)
Q Consensus 167 ~~~~~~~ 173 (203)
..+.+..
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 9887643
No 28
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.1e-34 Score=204.53 Aligned_cols=164 Identities=88% Similarity=1.329 Sum_probs=149.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 35899999999999999999999998888878888878877888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|||+++++++..+..|+..+......+.|+++++||.|+.....+..++...+++..+++++++||++|+|++++|.+|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999998777655789999999999987777788888999999999999999999999999999999
Q ss_pred HHHH
Q 028792 167 ASIK 170 (203)
Q Consensus 167 ~~~~ 170 (203)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 29
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.6e-34 Score=204.22 Aligned_cols=160 Identities=49% Similarity=0.920 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|+.++...+..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|++++++|+.+..|+..+......+.|+++|+||.|+...+.+..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877665579999999999998777788888999999899999999999999999999999864
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.4e-34 Score=207.74 Aligned_cols=164 Identities=30% Similarity=0.597 Sum_probs=146.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....+||+++|++|+|||||++++..+.+...+.||.+..+. ..+..++..+.+.+||++|++++..++..++.++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 346789999999999999999999999998888888875553 5677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEE
Q 028792 85 IVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 150 (203)
++|||++++++|+.+ ..|+..+....+ +.|+++|+||.|+.+ .+.+..+++.++++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 789999877654 689999999999864 245888999999999996 89999
Q ss_pred ecCCCCC-HHHHHHHHHHHHH
Q 028792 151 SAKSATN-VEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~g-i~~~~~~l~~~~~ 170 (203)
||++|+| ++++|..+++.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.9e-34 Score=206.36 Aligned_cols=167 Identities=45% Similarity=0.836 Sum_probs=148.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------CeEEEEEEEeCCChhhhchhhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS 75 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 75 (203)
++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 577999999999999999999999999988888888877776666554 4568899999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS 154 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
.++.++|++++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..++++..+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999998876543 4689999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~~ 172 (203)
|.|++++|.+|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 32
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=198.38 Aligned_cols=170 Identities=36% Similarity=0.704 Sum_probs=159.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.|||+++|..=+|||||+-++..++|.....+|....+..+.+.+.+....++||||.|+++|..+-..+++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45789999999999999999999999999888888887788888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|||++|+++|..+..|..+++......+-++||+||+|+.+.+.+..+++.+++...++.|+++||+++.||.++|..
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028792 165 MAASIKNRMA 174 (203)
Q Consensus 165 l~~~~~~~~~ 174 (203)
|.....+..+
T Consensus 170 Lt~~MiE~~s 179 (218)
T KOG0088|consen 170 LTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHhh
Confidence 9998887653
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4e-34 Score=202.89 Aligned_cols=162 Identities=52% Similarity=0.941 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888877777777777777899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|++++++++.+..|+..+........|+++++||+|+.+.+....++..+++..++++++++||++|.|++++|++|...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999998777777788888888889999999999999999999999887
Q ss_pred HH
Q 028792 169 IK 170 (203)
Q Consensus 169 ~~ 170 (203)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 34
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.6e-34 Score=210.74 Aligned_cols=169 Identities=27% Similarity=0.546 Sum_probs=148.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....+||+++|++|||||||+++|..+.+...+.+|++..+. ..+..++..+.+.+|||+|++++..+...++.++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 4456799999999999999999999999999888888876654 457788889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEE
Q 028792 84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 149 (203)
+|+|||++++++|..+ ..|+..+..... +.|+++|+||+|+.+ .+.+..+++.++++.+++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999984 789999877654 689999999999864 256788899999999998 6999
Q ss_pred EecCCCC-CHHHHHHHHHHHHHHHhc
Q 028792 150 TSAKSAT-NVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 150 ~Sa~~~~-gi~~~~~~l~~~~~~~~~ 174 (203)
|||++|+ |++++|..+...+.++..
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999998 899999999998876533
No 35
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.6e-34 Score=205.14 Aligned_cols=160 Identities=34% Similarity=0.661 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+..++..+++.+||++|++++..++..++.++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887655 445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 89 DVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTANK----------VVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 89 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
|++++++|+.+ ..|+..+..... +.|+++|+||+|+.+.+ .+..++..++++..++ .+++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689998876654 69999999999996542 4778889999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIK 170 (203)
Q Consensus 157 gi~~~~~~l~~~~~ 170 (203)
|++++|..+.+.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 36
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.1e-34 Score=206.40 Aligned_cols=163 Identities=29% Similarity=0.583 Sum_probs=141.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|..|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..++.++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999998888888875543 445678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CCEEEEec
Q 028792 87 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSA 152 (203)
Q Consensus 87 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa 152 (203)
|||++++++|+.+. .|+..+.... .+.|+++|+||.|+.+.. .+..++..+++..++ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5887776554 369999999999996542 356678888999888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~ 171 (203)
++|+|++++|.+|.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 37
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.5e-34 Score=201.75 Aligned_cols=164 Identities=55% Similarity=0.895 Sum_probs=149.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+++++
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 36789999999999999999999999888888888888888888888888889999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|+++++++..+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887766678999999999998777777888888888888999999999999999999999
Q ss_pred HHHH
Q 028792 166 AASI 169 (203)
Q Consensus 166 ~~~~ 169 (203)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8764
No 38
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-34 Score=195.44 Aligned_cols=201 Identities=41% Similarity=0.671 Sum_probs=174.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
+.-..|.++++++|++-+|||+|++.+..++++.-..||++.++....+.. +|..+++++|||.|++++++....++++
T Consensus 2 epif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 2 EPIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred CcceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999999999887764 5777999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
+-++++|||++++++|+.+..|+.+...... ...-+.+|++|.|+...++++.++++.+++.++..++++||++|.|+
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence 9999999999999999999999998765544 34446788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCC--------CCCCCccccCCCCCCCCCCCCC
Q 028792 159 EQAFMAMAASIKNRMASQPASN--------NARPPTVQIRGQPVNQKSGCCS 202 (203)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
++.|..|.+.+.....+..-.. .-++.....++.-++....|||
T Consensus 162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 9999999999988776632211 2455555566666667778888
No 39
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=8.1e-34 Score=201.91 Aligned_cols=166 Identities=55% Similarity=0.940 Sum_probs=151.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++++......++..+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 57799999999999999999999999888887788888888888888888889999999999999888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999877665679999999999998767778888888998889999999999999999999999
Q ss_pred HHHHHH
Q 028792 166 AASIKN 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 40
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=192.57 Aligned_cols=174 Identities=48% Similarity=0.858 Sum_probs=162.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
+++.+.+||+++|..|+|||.|++++..+-+++....|++.++..+++.+++..++++|||+.|++++++....+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++|+|||++...+|+-+.+|+.++..+.....--|+|+||.|+.+.++++.+-.++|.+.....++++||++.++++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988777789999999999988999999999999988999999999999999999
Q ss_pred HHHHHHHHHHhccC
Q 028792 163 MAMAASIKNRMASQ 176 (203)
Q Consensus 163 ~~l~~~~~~~~~~~ 176 (203)
..+...+.......
T Consensus 162 ~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 162 LDLACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99987776554443
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.9e-34 Score=201.86 Aligned_cols=162 Identities=31% Similarity=0.706 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+++||+||++.+...+..++..+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899888888888888888899999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
|+++++++..+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877643 4689999999999976666778888888888889999999999999999999
Q ss_pred HHHHHHH
Q 028792 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 42
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1e-33 Score=204.66 Aligned_cols=166 Identities=30% Similarity=0.602 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|+|||||+++|.++.+...+.++....+... +... +..+.+.+||+||++++...+..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999998888777776665443 4443 6778999999999999998888899999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc----ccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHH
Q 028792 88 YDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK----VVSYETAKAFADEIGI-PFMETSAKSATNVEQA 161 (203)
Q Consensus 88 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 161 (203)
||++++++|+.+.. |+..+.... .+.|+++|+||.|+.... .+..++..+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999864 877776543 368999999999986532 4567788889999988 8999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 028792 162 FMAMAASIKNRMASQ 176 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~ 176 (203)
|.++.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998766544
No 43
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4e-33 Score=204.88 Aligned_cols=169 Identities=53% Similarity=0.898 Sum_probs=152.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|+..+..++..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998888877888888887788888888889999999999999888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|||+++++++..+..|+..+........|+++++||.|+.....+..++..++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999888776655679999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 028792 166 AASIKNRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+.+...
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 998876543
No 44
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.6e-34 Score=203.19 Aligned_cols=161 Identities=31% Similarity=0.598 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||++++..+.++..+.+|.+..+. ..+.+++..+.+.+||++|++++..+...++.++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888865553 5677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEEecC
Q 028792 88 YDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAK 153 (203)
Q Consensus 88 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
||++++++|+.+ ..|+..+....+ +.|+++|+||.|+.+ ...+..+++.++++.+++ ++++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789998877654 689999999999864 235788899999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028792 154 SATN-VEQAFMAMAASIK 170 (203)
Q Consensus 154 ~~~g-i~~~~~~l~~~~~ 170 (203)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-33 Score=200.00 Aligned_cols=163 Identities=53% Similarity=0.945 Sum_probs=146.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 36799999999999999999999998888887788877777788888888889999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|||+++++++..+..|+..+......+.|+++|+||+|+...+....++..++++..+. .++++||++|.|++++|.+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999998776556799999999999987777777888888888875 6899999999999999999
Q ss_pred HHHH
Q 028792 165 MAAS 168 (203)
Q Consensus 165 l~~~ 168 (203)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9864
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.3e-33 Score=203.00 Aligned_cols=164 Identities=27% Similarity=0.552 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|..|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++.++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988887788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-----KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
|+++++++..+..|+..+........| ++|+||+|+... .....++..++++..+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776554566 678999998521 11224566778888899999999999999999999
Q ss_pred HHHHHHHHHh
Q 028792 164 AMAASIKNRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
++.+.+.+..
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999887533
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=8.9e-34 Score=200.41 Aligned_cols=161 Identities=46% Similarity=0.863 Sum_probs=152.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|++++|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998888999999999999999999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+++++++..+..|+..+........|+++++||.|+.+.+.++.+++.+++..++++++++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988788999999999999999999999999999999999999987
Q ss_pred H
Q 028792 170 K 170 (203)
Q Consensus 170 ~ 170 (203)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 48
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.3e-33 Score=206.49 Aligned_cols=165 Identities=27% Similarity=0.557 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+|+|.+|+|||||+++|..+.++..+.||....+. ..+.+++..+.+.+||++|++.|..++..++.++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999888898876554 56778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++|+.+. .|...+.... .+.|++||+||+|+... ..+..++...+++..++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 4766665443 47999999999998642 13667889999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHhcc
Q 028792 155 ATN-VEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 155 ~~g-i~~~~~~l~~~~~~~~~~ 175 (203)
+++ ++++|..+......+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 985 999999999987765443
No 49
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=4.8e-33 Score=204.78 Aligned_cols=172 Identities=52% Similarity=0.811 Sum_probs=146.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.+....+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+..++..+.+.+||+||++++..++..++..+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 45567899999999999999999999987764 45677777777777778888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQ-WLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
++++|||++++++|..+.. |...+..... .+.|+++|+||+|+........++...++..++++++++||+++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999876 5555544332 4679999999999987667777888888888899999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028792 161 AFMAMAASIKNRMAS 175 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~ 175 (203)
+|.+|.+.+.+....
T Consensus 168 l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 168 CFEELALKIMEVPSL 182 (211)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998875543
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.2e-33 Score=198.47 Aligned_cols=160 Identities=41% Similarity=0.697 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..++..+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 344566777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|++++++++.+..|+..+..... .+.|+++++||+|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 47899999999999776667777777888888899999999999999999999987
Q ss_pred HH
Q 028792 168 SI 169 (203)
Q Consensus 168 ~~ 169 (203)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.6e-33 Score=197.15 Aligned_cols=160 Identities=50% Similarity=0.864 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887788887888888888888899999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+......+.|+++++||.|+.+...+..+++..++...++.++++||+++.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877666689999999999998777788888999999999999999999999999999999875
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=6.3e-33 Score=196.28 Aligned_cols=163 Identities=63% Similarity=1.004 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998888887888888888888888888889999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|++++.+++.+..|+..+......+.|+++++||+|+........+.+.+++...+++++++|+++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765689999999999987766777788888888889999999999999999999999998
Q ss_pred HHH
Q 028792 169 IKN 171 (203)
Q Consensus 169 ~~~ 171 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.5e-33 Score=197.82 Aligned_cols=162 Identities=38% Similarity=0.669 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887777777776444 35667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++..++++..+++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886653 35799999999999987767777777888888889999999999999999999998
Q ss_pred HHHH
Q 028792 167 ASIK 170 (203)
Q Consensus 167 ~~~~ 170 (203)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7653
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6e-33 Score=205.01 Aligned_cols=166 Identities=31% Similarity=0.540 Sum_probs=146.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++..+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999988888899988888777777777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+... ....+++ .++...+++++++||++|.|++++|.||
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999987665 36999999999998542 3344444 6777788999999999999999999999
Q ss_pred HHHHHHHhc
Q 028792 166 AASIKNRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+.+...
T Consensus 168 ~~~~~~~~~ 176 (219)
T PLN03071 168 ARKLAGDPN 176 (219)
T ss_pred HHHHHcCcc
Confidence 998875543
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4.7e-33 Score=199.06 Aligned_cols=160 Identities=29% Similarity=0.535 Sum_probs=138.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||+++|..+.+...+.||.+..+. ..+..++..+.+.+||++|++++...+..++.++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888875554 3456788889999999999999999898899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecC
Q 028792 88 YDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAK 153 (203)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (203)
||++++++|+.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.++++..+ +.++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 4888876654 36899999999998653 3556777888888887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028792 154 SATNVEQAFMAMAASI 169 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~ 169 (203)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.9e-33 Score=195.51 Aligned_cols=159 Identities=36% Similarity=0.676 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+||+++|.+|+|||||+++|..+.+...+.++.+.++....+... +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888888877776666666 677899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|||+++++++..+..|+..+..... +.|+++|+||.|+.....+..++...++...+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999988865543 689999999999987777788888899999999999999999999999999987
Q ss_pred HH
Q 028792 167 AS 168 (203)
Q Consensus 167 ~~ 168 (203)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.5e-32 Score=195.69 Aligned_cols=162 Identities=41% Similarity=0.684 Sum_probs=142.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+++||+||++++..++..++..+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998888999888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
+++++++..+..|+..+... .....|+++|+||.|+.+... ...++...++..++.+++++||++|.|++++|..|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987554 334578999999999865433 345566778888889999999999999999999999
Q ss_pred HHHHH
Q 028792 167 ASIKN 171 (203)
Q Consensus 167 ~~~~~ 171 (203)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.3e-32 Score=195.33 Aligned_cols=160 Identities=32% Similarity=0.629 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888887777777777888899999999999998888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+..... +.|+++|+||+|+... ... ....++.+..+++++++||++|+|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 7999999999998733 333 33456677777899999999999999999999988
Q ss_pred HHH
Q 028792 169 IKN 171 (203)
Q Consensus 169 ~~~ 171 (203)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.1e-32 Score=198.15 Aligned_cols=160 Identities=34% Similarity=0.567 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|++|+|||||+++|..+.+...+.++....+. ..+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 37999999999999999999999988887787765543 44556777889999999999999888888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
|++++++|..+. .|+..+.... .+.|+++|+||+|+.... .+..++..+++...+ ++++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888887654 368999999999987543 245566777777777 7899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIK 170 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~ 170 (203)
|.|++++|.+|.+.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999886
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.4e-32 Score=194.65 Aligned_cols=161 Identities=40% Similarity=0.715 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+|+|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||++++...+..++..+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999998887777666653 33456667777889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|++++++++.+..|+..+..... .+.|+++++||+|+........++...+++..+++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888765533 46899999999999876667777888888888999999999999999999999998
Q ss_pred HHH
Q 028792 168 SIK 170 (203)
Q Consensus 168 ~~~ 170 (203)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 61
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.4e-32 Score=194.61 Aligned_cols=162 Identities=43% Similarity=0.742 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 56799999999999999999999999988877788887777778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQ 160 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 160 (203)
+|||+++++++..+..|+..+..... .+.|+++++||.|+. ......+++.+++..++ .+++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988765432 468999999999986 45567788889988888 4899999999999999
Q ss_pred HHHHHHHH
Q 028792 161 AFMAMAAS 168 (203)
Q Consensus 161 ~~~~l~~~ 168 (203)
+|.++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999864
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.9e-32 Score=193.37 Aligned_cols=160 Identities=41% Similarity=0.733 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+++||+||+..+...+..++..+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999998999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+......+.|+++++||+|+.+......++...+++..+++++++||+++.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655569999999999997666777788888888888999999999999999999999874
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.9e-32 Score=194.29 Aligned_cols=163 Identities=47% Similarity=0.850 Sum_probs=145.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-hhhhccccCCcEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGII 85 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i 85 (203)
+.++|+++|++|+|||||++++..+.++..+.++.+.++....+..++..+.+.+||++|++++. ..+..++.++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 36899999999999999999999988888888888878888888888888999999999998876 46788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC---CCCHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS---ATNVEQA 161 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~ 161 (203)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..+...+++...+++++++||++ +.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 99999999999999999988876543 5799999999999987777888888889998889999999999 9999999
Q ss_pred HHHHHHHH
Q 028792 162 FMAMAASI 169 (203)
Q Consensus 162 ~~~l~~~~ 169 (203)
|.+|.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.7e-32 Score=194.15 Aligned_cols=161 Identities=39% Similarity=0.664 Sum_probs=140.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.++|+++|.+|+|||||++++..+.+.+.+.++.. +.....+..++..+.+.+||+||.+++..++..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988887777664 45556777788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||+++++++.++..|+..+..... .+.|+++++||+|+.....+..++...++...+++++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876543 5799999999999876666666677788877888999999999999999999998
Q ss_pred HHH
Q 028792 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.9e-32 Score=192.59 Aligned_cols=161 Identities=36% Similarity=0.594 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|..+.+.+.+.++...+.....+..++..+.+.+||++|++++...+..++.++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888877777766666667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|++++.++..+..|+..+..... +.|+++++||+|+... ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998876543 6899999999998432 1234556677778999999999999999999999998
Q ss_pred HHHHh
Q 028792 169 IKNRM 173 (203)
Q Consensus 169 ~~~~~ 173 (203)
+.+++
T Consensus 157 ~~~~~ 161 (161)
T cd04124 157 AVSYK 161 (161)
T ss_pred HHhcC
Confidence 87653
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.6e-32 Score=191.79 Aligned_cols=162 Identities=51% Similarity=0.826 Sum_probs=146.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||+++|.++.+...+.++.+..+....+.+++..+.+.+||+||+.++...+..++.++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998877778887777778888888889999999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
+|+++++++..+..|+..+........|+++++||+|+........++...+....+++++++||++|.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776567899999999998866667778888888888999999999999999999999988
Q ss_pred HH
Q 028792 168 SI 169 (203)
Q Consensus 168 ~~ 169 (203)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.9e-32 Score=193.35 Aligned_cols=159 Identities=35% Similarity=0.542 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765444 344556677789999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|+++++++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++...++.++++||++|+|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887765432 468999999999997766677777788888888999999999999999999999
Q ss_pred HHH
Q 028792 166 AAS 168 (203)
Q Consensus 166 ~~~ 168 (203)
.+.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 68
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.4e-32 Score=193.88 Aligned_cols=158 Identities=30% Similarity=0.587 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+.++..+.+...+.++... .....+..++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999988888888753 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
|++++++|..+. .|+..+.... .+.|+++|+||.|+.+. ..+..++..+++..++ +++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999986 5888776554 47999999999998643 2467788889999888 4999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAAS 168 (203)
Q Consensus 155 ~~gi~~~~~~l~~~ 168 (203)
|+|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999763
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.5e-32 Score=190.57 Aligned_cols=160 Identities=36% Similarity=0.683 Sum_probs=137.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++..+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777765443 45556777778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+..+++...+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988888876543 4789999999999865 34556777788888889999999999999999999998
Q ss_pred HHH
Q 028792 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=6.5e-32 Score=196.46 Aligned_cols=167 Identities=23% Similarity=0.341 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--------hhhhccccC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG 80 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 80 (203)
+||+|+|.+|||||||+++|.++.++..+.|+.+.++....+..++..+.+++||+||...+. ......+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999888888887766666667788888999999999965331 112345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCCC
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSAT 156 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 156 (203)
+|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+....++..+++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3579999999999997766666666767654 567999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 028792 157 NVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~~~ 175 (203)
|++++|..+.+.+..+...
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999888755443
No 71
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=9.4e-32 Score=190.32 Aligned_cols=161 Identities=37% Similarity=0.636 Sum_probs=139.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||++++++..+...+.++....+ ......++..+.+.+||+||+.++..++..++..+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999998887766666665333 44556778788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||++++.++..+..|+..+.... ..+.|+++++||+|+........++..++++..+++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998886653 34789999999999987666777778888888889999999999999999999998
Q ss_pred HHH
Q 028792 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.7e-31 Score=188.50 Aligned_cols=161 Identities=42% Similarity=0.765 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+.+.+.++....+....+...+..+.+++||+||+..+...+..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766667666666677777777789999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+......+.|+++++||+|+.....+..++..+++...+.+++++|+++++|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887766678999999999998766677788888888889999999999999999999999876
Q ss_pred H
Q 028792 169 I 169 (203)
Q Consensus 169 ~ 169 (203)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.8e-31 Score=188.63 Aligned_cols=165 Identities=43% Similarity=0.737 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777778777777777888888899999999999999889999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~ 163 (203)
|+++++++..+..|...+..... .+.|+++|+||+|+........++...+.+..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999888888877644432 368999999999998656667778888888887 7999999999999999999
Q ss_pred HHHHHHHHHh
Q 028792 164 AMAASIKNRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.4e-31 Score=188.32 Aligned_cols=160 Identities=33% Similarity=0.612 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+||+++|++|||||||+++|..+ .++..+.++.+.++....+..+ +..+.+.+||+||...+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6777777888777766666554 56789999999999998888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|+++++++..+..|+..+.... .+.|+++|+||.|+.+...+.......+....+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 468999999999997766667666677777788899999999999999999999
Q ss_pred HHHH
Q 028792 166 AASI 169 (203)
Q Consensus 166 ~~~~ 169 (203)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3e-31 Score=192.79 Aligned_cols=156 Identities=29% Similarity=0.586 Sum_probs=138.8
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh
Q 028792 14 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ 93 (203)
Q Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (203)
+|.+|||||||+++++.+.+...+.+|++.++....+..++..+.+.+||++|++++..++..++..+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888988888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 94 ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 94 ~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
.++..+..|+..+..... +.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|+.++|.+|.+.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999987653 799999999999854 3344443 467778889999999999999999999999988764
No 76
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=188.58 Aligned_cols=175 Identities=43% Similarity=0.806 Sum_probs=159.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC---------CeEEEEEEEeCCChhhhchh
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~ 73 (203)
++++|.++.+.+|++|+||||++.++..+++.+...+|++.++..+.+.++ +..+.+++|||.|+++++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 478899999999999999999999999999999999999999988877653 23578999999999999999
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
...|++++=+++++||+++.++|.+++.|+..+....- ++.-+++++||+|+.+.+.++.+.+.+++.++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999866544 35668889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCC
Q 028792 153 KSATNVEQAFMAMAASIKNRMASQP 177 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~~~~~~ 177 (203)
-+|.++++..+.|...++++.++-.
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876643
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.1e-31 Score=198.55 Aligned_cols=162 Identities=25% Similarity=0.423 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|.+|+|||||+++|+.+.+...+.+|++ ++....+.+++..+.+.|||++|+..+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888877777775 555667778888899999999999988888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCH
Q 028792 89 DVTDQESFNNVKQWLNEIDRY---------ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNV 158 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 158 (203)
|++++++|+.+..|+..+... ...+.|+++++||+|+.....+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 124689999999999976666777888777664 3578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
+++|.+|.....-
T Consensus 160 ~elf~~L~~~~~~ 172 (247)
T cd04143 160 DEMFRALFSLAKL 172 (247)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999986543
No 78
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.7e-31 Score=186.09 Aligned_cols=165 Identities=52% Similarity=0.894 Sum_probs=145.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887777777777777777888888888999999999998888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|+|+++++++..+..|+..+......+.|+++++||.|+.+...+..+....+......+++++||++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998887776667999999999999776666666667777777789999999999999999999
Q ss_pred HHHHH
Q 028792 165 MAASI 169 (203)
Q Consensus 165 l~~~~ 169 (203)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 79
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-31 Score=174.37 Aligned_cols=174 Identities=47% Similarity=0.869 Sum_probs=163.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+..+.++-+++|+-|+|||.|+..+...++...-..+++.++....+.+.+..++++|||+.|+++++...+.+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 56788999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
.+.|||++.+.++..+..|+...+....++..+++++||.|+...+.+..++..+|++..+..++++||++|+++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 028792 164 AMAASIKNRMASQP 177 (203)
Q Consensus 164 ~l~~~~~~~~~~~~ 177 (203)
...+.+.+.....+
T Consensus 167 e~akkiyqniqdgs 180 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGS 180 (215)
T ss_pred HHHHHHHHhhhcCc
Confidence 99998887665544
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=7.5e-31 Score=185.24 Aligned_cols=159 Identities=55% Similarity=0.930 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788877777777777887889999999999998888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|+++++++..+..|+..+..... .+.|+++++||+|+.. .....++..+++...+++++++||++|.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988876643 5789999999999863 345567788888888999999999999999999999987
Q ss_pred H
Q 028792 168 S 168 (203)
Q Consensus 168 ~ 168 (203)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=6.7e-31 Score=194.34 Aligned_cols=167 Identities=31% Similarity=0.430 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc-CCcEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIIV 86 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (203)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||+||++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999987776 55666665567777788888889999999999872 22344556 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|||++++.+|..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 479999999999998777777787888888889999999999999999999999
Q ss_pred HHHHHHHhccCC
Q 028792 166 AASIKNRMASQP 177 (203)
Q Consensus 166 ~~~~~~~~~~~~ 177 (203)
.+.+.......+
T Consensus 159 ~~~~~~~~~~~~ 170 (221)
T cd04148 159 VRQIRLRRDSKE 170 (221)
T ss_pred HHHHHhhhcccc
Confidence 998876554433
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.5e-31 Score=189.30 Aligned_cols=159 Identities=35% Similarity=0.678 Sum_probs=136.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||+||++.+..++..++..+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765443 34566788888999999999999998899999999999999999
Q ss_pred CChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 91 TDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 91 ~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+++++|+.+.. |+..+..... +.|+++|+||+|+.... .+..++..++++..+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 99999999864 8888876543 79999999999986532 2667778889999886 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIKN 171 (203)
Q Consensus 157 gi~~~~~~l~~~~~~ 171 (203)
|++++|..|.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987753
No 83
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=6.3e-31 Score=184.53 Aligned_cols=158 Identities=63% Similarity=1.021 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++++|||||+++|.+..+...+.++.+.++....+..++....+.+||+||+..+...+..++.++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888899999999999999889999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|+++++++..+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|++++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887656799999999999975566778888889988899999999999999999999986
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8e-31 Score=186.47 Aligned_cols=161 Identities=37% Similarity=0.656 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||+.++..++..++..++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999888877777776543 3466667788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++.++ ++++++||++|.|++++|.++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886543 3479999999999997777777777788888887 8999999999999999999998
Q ss_pred HHHH
Q 028792 167 ASIK 170 (203)
Q Consensus 167 ~~~~ 170 (203)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7654
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=8.4e-31 Score=190.03 Aligned_cols=158 Identities=29% Similarity=0.490 Sum_probs=128.0
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCCCccccce-eeEEEE--------EEECCeEEEEEEEeCCChhhhch
Q 028792 8 LFKLLLIGDSGVGKSCLLL-RFADDS-----YLESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
.+||+++|.+|+|||||+. ++.++. +...+.||++. +.+... ...++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555433 34556677642 222211 24678889999999999875 2
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccC
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA-------------------NKVVS 132 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~ 132 (203)
....++.++|++|+|||++++++|+.+. .|+..+..... +.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556789999999999999999999997 58888876553 689999999999864 35778
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 133 YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
.+++.++++.++++|++|||++|.|++++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999864
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=4.7e-31 Score=187.08 Aligned_cols=160 Identities=33% Similarity=0.549 Sum_probs=134.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-chhhhccccCCcEEEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-RTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~~i~v~ 88 (203)
+|+++|++|+|||||+++++.+.+...+.++....+ ...+..++..+.+.+||+||+..+ ......++..+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998887766666654333 455667888889999999998752 345667889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC-CCHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA-TNVEQAFMAM 165 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l 165 (203)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++| .|++++|.+|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 346999999999998776677788888899888999999999999 4999999999
Q ss_pred HHHHH
Q 028792 166 AASIK 170 (203)
Q Consensus 166 ~~~~~ 170 (203)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98664
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=9.2e-31 Score=184.16 Aligned_cols=153 Identities=25% Similarity=0.435 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||++++..+.+.+.+.++ ...+ ...+.+++..+.+.+||++|++. ..++.++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988877665444 2233 46677888888999999999864 24567899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
|++++++|..+..|+..+..... .+.|+++|+||.|+. ..+.+..++..++++.. ++.+++|||++|.|++++|.+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877653 568999999999985 34677778888888776 489999999999999999999
Q ss_pred HHHH
Q 028792 165 MAAS 168 (203)
Q Consensus 165 l~~~ 168 (203)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9754
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=6.4e-31 Score=187.11 Aligned_cols=162 Identities=23% Similarity=0.343 Sum_probs=138.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
..+||+++|.+|+|||||+++|.++.+. ..+.+|.+..+....+..++..+.+.+||++|+..+..++..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5799999999999999999999999988 778888887777777778888888999999999988888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|+|++++++++.+..|+..+... .+.|+++|+||.|+.+.......+..++++.+++ .++++||++|.|++++|..
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999888888765322 3689999999999865544434455677777776 4799999999999999999
Q ss_pred HHHHHH
Q 028792 165 MAASIK 170 (203)
Q Consensus 165 l~~~~~ 170 (203)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998765
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=2.2e-30 Score=185.03 Aligned_cols=157 Identities=32% Similarity=0.580 Sum_probs=134.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+|++++|++|+|||||++++..+.+...+.++. .+.....+..++..+.+.+||+||+.++...+..++.++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999888887777765 3444456777888899999999999999999989999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++|+.+. .|+..+.... .+.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 5887776543 3689999999999864 245667788899998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAA 167 (203)
Q Consensus 155 ~~gi~~~~~~l~~ 167 (203)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=4.4e-30 Score=181.65 Aligned_cols=162 Identities=41% Similarity=0.683 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|....+...+.++... ........++..+.+.+||+||+.++...+..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999998887776666543 33455667878899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|++++.++..+..|+..+..... .+.|+++|+||+|+........++...+...++++++++||++|.|++++|.+|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 47999999999999765555667777788888899999999999999999999998
Q ss_pred HHHH
Q 028792 168 SIKN 171 (203)
Q Consensus 168 ~~~~ 171 (203)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.4e-30 Score=184.13 Aligned_cols=159 Identities=34% Similarity=0.600 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|..+.+...+.++... .....+..++..+.+.+||+||++.+...+..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999998887776666543 33445667888888999999999999988999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++|..+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 477777655 457999999999998543 24566778888888885 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~ 169 (203)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=7.7e-30 Score=179.61 Aligned_cols=158 Identities=42% Similarity=0.704 Sum_probs=139.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||...+...+..++..+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877777666665 5555666677777899999999999988888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
+++++++.++..|+..+..... ...|+++++||+|+........+.+.+++..++++++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877655 579999999999998766777888889999888999999999999999999999875
No 93
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.3e-29 Score=184.80 Aligned_cols=161 Identities=29% Similarity=0.454 Sum_probs=133.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|+|||||+++|+...+...+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666654 3455567777877899999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA-NKVVSYETAKAFAD-EIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... ..+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888776644 4799999999999865 34444444444433 4467899999999999999999999
Q ss_pred HHHHH
Q 028792 167 ASIKN 171 (203)
Q Consensus 167 ~~~~~ 171 (203)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 97763
No 94
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.3e-29 Score=180.07 Aligned_cols=165 Identities=37% Similarity=0.585 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|.+|+|||||+++|....+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998887766666654433 455566777788999999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|+++..++..+..|+..+.... ..+.|+++++||+|+...+....++...++...+++++++||+++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999887776543 356899999999999766666667777788888899999999999999999999999
Q ss_pred HHHHHhc
Q 028792 168 SIKNRMA 174 (203)
Q Consensus 168 ~~~~~~~ 174 (203)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8875543
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=3.2e-29 Score=181.15 Aligned_cols=162 Identities=35% Similarity=0.592 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+|+|++|+|||||+++|..+.+.+.+.++....+. ..+..++..+.+.+||++|+..+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999987777766666544433 35566777788999999999888777767789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTA----------NKVVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
|+++++++..+. .|+..+..... +.|+++|+||+|+.. ...+..++...+++..+. ++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 48888876544 599999999999854 234455677888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIKNR 172 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~ 172 (203)
|++++|+++.+.+...
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877533
No 96
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=174.17 Aligned_cols=188 Identities=44% Similarity=0.848 Sum_probs=162.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792 13 LIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
++|.+++|||.|+-++..+.+. .+..+|++.++..+.+..++..+++++||+.|++++++....+++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888766554 456789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 92 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+..||++.+.|+.++..+..+...+.+++||+|+..++.+..++.+.+++.+++|++++||++|.+++-.|..|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999988888999999999998888999999999999999999999999999999999999999987
Q ss_pred HhccCCCCCCCCCCccccCCCCCCCCCCCC
Q 028792 172 RMASQPASNNARPPTVQIRGQPVNQKSGCC 201 (203)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
..-..|+.. +...+..-..+.+..-..||
T Consensus 162 ~~~~~~~~~-~~~~~~~v~~~~k~eia~cc 190 (192)
T KOG0083|consen 162 LKMGAPPEG-EFADHDSVADEGKGEIARCC 190 (192)
T ss_pred hccCCCCCC-ccccchhHHhcCCCcccccc
Confidence 766655442 33344433334433445566
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.9e-29 Score=181.33 Aligned_cols=160 Identities=22% Similarity=0.372 Sum_probs=123.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.++||||||+++|..+.+. .+.||.+..+ ..+..++ +.+++||+||++++..++..++.++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999977765 3456666443 3344443 88999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 159 (203)
||+|+++++++.++..++..+... ...+.|+++++||.|+... ...+++.+...... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998888776665432 2246899999999998654 33444444332221 246689999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 98
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=3e-29 Score=181.08 Aligned_cols=168 Identities=38% Similarity=0.611 Sum_probs=153.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|.+|+|||+|..++....+...+.||++ +.+.+.+.+++..+.+.|+|++|+..+..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 5666777788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
||+++++.||+.+..+++.+..... ...|+++|+||+|+...+.+..++...++..++++++++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999854433 467999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028792 166 AASIKNRMAS 175 (203)
Q Consensus 166 ~~~~~~~~~~ 175 (203)
.+.+...+..
T Consensus 161 ~r~~~~~~~~ 170 (196)
T KOG0395|consen 161 VREIRLPREG 170 (196)
T ss_pred HHHHHhhhcc
Confidence 9988774544
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.3e-29 Score=180.17 Aligned_cols=154 Identities=23% Similarity=0.396 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|.+|+|||||+++|..+.+.. +.+|.+.++. .+.. ..+.+.+||+||++++...+..++..+|++||
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999998766643 4566654443 3333 34889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 160 (203)
|||++++.++.++..++..+... ...+.|+++|+||+|+.+. ...+++.++... ....++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999888877666443 2246899999999998643 445566555432 224689999999999999
Q ss_pred HHHHHHH
Q 028792 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|.||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999964
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.4e-29 Score=179.01 Aligned_cols=155 Identities=21% Similarity=0.398 Sum_probs=124.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.++||||||+++|.+..+.. +.+|.+..+. .+..++ +.+.+||+||+.++...+..++..+|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886543 5566654443 334443 789999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CCEEEEecCCCCCHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG------IPFMETSAKSATNVEQAF 162 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~ 162 (203)
+++++++.++..|+..+.... ..+.|+++++||+|+.+ ....+++.+++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888775432 24589999999999864 355666666554222 368899999999999999
Q ss_pred HHHHHHHHH
Q 028792 163 MAMAASIKN 171 (203)
Q Consensus 163 ~~l~~~~~~ 171 (203)
+||.+.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999887654
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=3.4e-29 Score=180.40 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=129.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.++|+++|++|||||||++++..+.+... .++.+.......+.. ++..+.+.+||+||++++..++..++..+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998776544 456555554444443 3356889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCCEEEEecCCCCCHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKSATNVE 159 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~ 159 (203)
|+|+++++++..+..|+..+.... ..+.|+++++||+|+... ...++...+... .+++++++||++|+|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999988888887765543 246899999999998642 334444444321 12468899999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028792 160 QAFMAMAASIKNRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|.+|.+.+.+.++
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876554
No 102
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=9e-29 Score=176.95 Aligned_cols=159 Identities=33% Similarity=0.653 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|++|||||||+++|..+.+...+.++....+. ..+..++..+.+.+||++|++.+...+...+.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999888777777764443 45567788889999999999998888888899999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792 89 DVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 89 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++++.+.. |+..+.... .+.|+++++||.|+.+.. .+...+..+++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988864 777776543 368999999999986431 2345667777777764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~ 169 (203)
|.|++++|.+|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2.7e-30 Score=183.00 Aligned_cols=153 Identities=22% Similarity=0.338 Sum_probs=124.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|++|||||||+++|.+..+...+.+|.+... .. ++...+.+.+||+||+.++...+..++.++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998887777777776432 22 33445889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCCEEEEecCC------CCCHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY----ETAKAFADEIGIPFMETSAKS------ATNVE 159 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~ 159 (203)
++++.++...+.|+..+.... .+.|+++|+||.|+........ .++..+++..++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999998888887775443 4799999999999876543321 223455566678899999888 99999
Q ss_pred HHHHHHHH
Q 028792 160 QAFMAMAA 167 (203)
Q Consensus 160 ~~~~~l~~ 167 (203)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99999875
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=4.8e-29 Score=178.40 Aligned_cols=157 Identities=21% Similarity=0.375 Sum_probs=121.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..++|+++|.+|+|||||+++|..+.+. .+.||.+..+. .+... .+.+.+||+||+.++...+..++.++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999876664 35566664443 33343 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++++...++..+.... ..+.|+++|+||.|+.+. ...+++.+.... ..+.++++||++|+|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888877764332 246899999999998643 233333332221 12357789999999999
Q ss_pred HHHHHHHHHH
Q 028792 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.4e-29 Score=178.43 Aligned_cols=152 Identities=23% Similarity=0.401 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+++|..+.+. .+.||.+..+. .+... .+.+.+||+||++++...+..++.++|+++||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 35666664432 33333 488999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
|+++++++..+..++..+... ...+.|+++++||.|+... ...+++..... ...+.++++||++|+|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877666432 2246899999999998643 22333322221 123457899999999999999
Q ss_pred HHHHH
Q 028792 163 MAMAA 167 (203)
Q Consensus 163 ~~l~~ 167 (203)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=9.2e-29 Score=176.68 Aligned_cols=156 Identities=24% Similarity=0.396 Sum_probs=123.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..++|+++|++|+|||||+++|.+..+ ..+.++.+ +....+..++ +.+.+||+||+..+...+..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45678999999999999999999998754 34445554 3334455554 7899999999998888888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNV 158 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 158 (203)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..+++..+.+. .+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999888887776443 22579999999999986532 44555555432 3568999999999999
Q ss_pred HHHHHHHHH
Q 028792 159 EQAFMAMAA 167 (203)
Q Consensus 159 ~~~~~~l~~ 167 (203)
+++|++|..
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-28 Score=176.69 Aligned_cols=159 Identities=24% Similarity=0.390 Sum_probs=121.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|++|||||||++++..+.+.. +.+|.+..+. .+..+ .+.+++||+||++++...+..++..+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998776654 4566654443 33343 3889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 160 (203)
|+|+++++++.....++..+... ...+.|+++++||.|+.+. ...+++...... ..+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999888766665332 2236899999999998642 233333222211 123567999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 161 AFMAMAASIKNR 172 (203)
Q Consensus 161 ~~~~l~~~~~~~ 172 (203)
+|+||.+.+...
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999877654
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.9e-28 Score=173.53 Aligned_cols=157 Identities=35% Similarity=0.651 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||+..+.......+..+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999888666666654 333445567788889999999999988877888889999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-CEEEEecCCC
Q 028792 89 DVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANK-----------VVSYETAKAFADEIGI-PFMETSAKSA 155 (203)
Q Consensus 89 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (203)
|+++++++..... |+..+..... +.|+++|+||+|+.... .+..++..++...++. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887654 6666665543 79999999999987654 2346677788888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~gi~~~~~~l~~ 167 (203)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=7.7e-28 Score=177.64 Aligned_cols=166 Identities=33% Similarity=0.579 Sum_probs=143.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+||++|+.++...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 55677999999999999999999998888888888999888888888788888999999999999988888888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||+++..++..+..|+..+.... .+.|+++++||.|+.+. .... +...++...++.++++||++|.|++++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887664 36899999999998643 2322 33456777788999999999999999999
Q ss_pred HHHHHHHHH
Q 028792 164 AMAASIKNR 172 (203)
Q Consensus 164 ~l~~~~~~~ 172 (203)
+|.+.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999988753
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.9e-28 Score=172.30 Aligned_cols=160 Identities=26% Similarity=0.408 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|..+.++..+.++.. . ........+..+.+.+||+||...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999888665433221 2 2233445667789999999999887777777789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcC--CCEEEEecCCCCCHHHHHH
Q 028792 89 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEIG--IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 163 (203)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+..... .+....+....+ .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 57777766544 78999999999997654321 233333333333 3799999999999999999
Q ss_pred HHHHHHHH
Q 028792 164 AMAASIKN 171 (203)
Q Consensus 164 ~l~~~~~~ 171 (203)
.+...+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887753
No 111
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=5.5e-28 Score=172.75 Aligned_cols=158 Identities=33% Similarity=0.504 Sum_probs=127.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|.+|||||||+++|..+.... ..||.+ +....+..++ +.+.+||.+|+..+...|..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3678999999999999999999999765433 445555 5556666666 7889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCCEEEEecCCCCC
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKSATN 157 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~g 157 (203)
|||+|.++++.+.+....+..+... ...+.|++|++||.|+.+. ...+++...... ..+.++.|||.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999998888877766543 2257999999999998653 455555554332 235699999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 158 VEQAFMAMAASI 169 (203)
Q Consensus 158 i~~~~~~l~~~~ 169 (203)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=6.9e-28 Score=170.16 Aligned_cols=152 Identities=20% Similarity=0.351 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+|+++|++|||||||+++|.+... ...+.++.+... ..+... .+.+.+||+||+.++...+..++..+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445566665433 223333 478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (203)
|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999988888877776543 22479999999999986532 2233222211 1124589999999999999
Q ss_pred HHHHHHH
Q 028792 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=3e-28 Score=173.08 Aligned_cols=151 Identities=23% Similarity=0.336 Sum_probs=119.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|++|||||||+++|.+. +...+.+|.+.. ...+..++ +.+.+||+||+..+..++..++.++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555666666643 34455544 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHH------HHHHHHcC--CCEEEEecCCC-----
Q 028792 90 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETA------KAFADEIG--IPFMETSAKSA----- 155 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~----- 155 (203)
++++.++.++..|+..+..... .+.|+++|+||.|+..... ..++ .++++..+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999998888765432 4789999999999875432 2222 22332222 56888999998
Q ss_pred -CCHHHHHHHHHH
Q 028792 156 -TNVEQAFMAMAA 167 (203)
Q Consensus 156 -~gi~~~~~~l~~ 167 (203)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 114
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=159.83 Aligned_cols=164 Identities=23% Similarity=0.395 Sum_probs=132.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+++++|+++|..||||||++++|.+... ....|+.+ +...++..++ +.+++||.+|+..++..|..++..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 56799999999999999999999998662 22234444 6666776766 8899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcc---cC-HHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKV---VS-YETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~---~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
|||+|.+|+..+++....+..+.. ....+.|+++++||.|+...-. +. ..++.++++.+.++++.|||.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999888776665533 2335789999999999874311 11 123445667788999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028792 160 QAFMAMAASIKNRM 173 (203)
Q Consensus 160 ~~~~~l~~~~~~~~ 173 (203)
+.++||.+.+.++.
T Consensus 168 ~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 168 EGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998743
No 115
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=171.89 Aligned_cols=167 Identities=34% Similarity=0.604 Sum_probs=147.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+.+|+++||+.++|||+|+..+..+.++..+.||+. +-+...+.+ ++..+.+.+|||.|++.|+.++..-+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3578999999999999999999999999999999997 445555667 59999999999999999999888889999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEEE
Q 028792 85 IVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 150 (203)
++||++.++++|+++.. |+.++.++.+ +.|+|+|++|.|+.+. ..+..++...++++.+ ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999766 9999988875 7999999999999743 2567788899999999 589999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhc
Q 028792 151 SAKSATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~~~~~ 174 (203)
||+++.|+.++|+..+...+....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998875443
No 116
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.7e-27 Score=172.00 Aligned_cols=148 Identities=25% Similarity=0.424 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-----CeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+||+++|.+++|||||+++|.++.+...+.+|++.++....+.++ +..+.+.+||++|++++..++..++.++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666653 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYA-------------------SENVNKLLVGNKCDLTANKVVSYE----TAKAFA 140 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~----~~~~~~ 140 (203)
+|+|||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.+....+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986531 236899999999999766544443 234678
Q ss_pred HHcCCCEEEEecCCCC
Q 028792 141 DEIGIPFMETSAKSAT 156 (203)
Q Consensus 141 ~~~~~~~~~~Sa~~~~ 156 (203)
++.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8889999988877544
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.9e-27 Score=172.29 Aligned_cols=156 Identities=26% Similarity=0.350 Sum_probs=123.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|||||||+++|.++.+. .+.++.+. ....+.+++ ..+.+||+||+.++...+..++..+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987764 34455543 334455555 67899999999988888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCCEE
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADE----------------IGIPFM 148 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 148 (203)
+|+|+++++++.....++..+..... .+.|+++++||+|+.. .+..+++..+... ....++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999998888887777654332 4689999999999864 3455666665542 124689
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028792 149 ETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~ 168 (203)
+|||++|+|++++|.||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2e-27 Score=169.90 Aligned_cols=154 Identities=21% Similarity=0.337 Sum_probs=119.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|++|+|||||+++|..+.+.. +.++.+..+ ..+..++ +.+.+||+||+.++...+..++..+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877654 455555443 3344443 789999999999998889999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 160 (203)
|+|+++++++.....++..+.... ..+.|+++++||+|+... ...+++.+.. ...+++++++||++|+|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999998888777666654332 246899999999998652 2333332222 22345799999999999999
Q ss_pred HHHHHHH
Q 028792 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|+||.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 119
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.4e-26 Score=165.36 Aligned_cols=145 Identities=42% Similarity=0.654 Sum_probs=128.8
Q ss_pred CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q 028792 31 DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA 110 (203)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 110 (203)
+.+.+.+.+|++.++....+..++..+.+.|||++|++++..++..++.++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999988988888889999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 111 SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 111 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
....|+++|+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|.+.+.+..+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 45689999999999976666788888888888889999999999999999999999998765544
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.8e-27 Score=167.84 Aligned_cols=152 Identities=26% Similarity=0.458 Sum_probs=116.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|++|+|||||+++|..+.+... .++.+..+ ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998876543 45554333 333332 34789999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCCEEEEecCCCCCHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAF------ADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++.++.....|+..+.... ..+.|+++|+||+|+... ...+++... ....+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999888888777765432 247999999999998542 222333222 12234579999999999999999
Q ss_pred HHHHH
Q 028792 163 MAMAA 167 (203)
Q Consensus 163 ~~l~~ 167 (203)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.9e-27 Score=167.18 Aligned_cols=152 Identities=29% Similarity=0.432 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+|+++|++|+|||||+++|..... ...+.++.+..+ ..+..++ ..+.+||+||+..+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 223344444333 3444554 789999999999999889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCCEEEEecCCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGIPFMETSAKSA 155 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (203)
+++|+|+++++++.....++..+.... ..+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888777765432 247899999999998653 333444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~gi~~~~~~l~~ 167 (203)
+|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.4e-26 Score=166.97 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=120.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.++.+.. +.++.+. ....+..++ +.+.+||+||+..+...+..++..+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999876543 3344433 233444444 78899999999988889999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCCEEEEec
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA 152 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 152 (203)
+|+|+++++++.....++..+... ...+.|+++++||.|+.. .++.+++.+.... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999988888777666443 224689999999999853 3455555544321 1235999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAAS 168 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~ 168 (203)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.1e-26 Score=162.13 Aligned_cols=151 Identities=25% Similarity=0.392 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|++++|||||+++|..+.+.. ..++.+... ..+... ...+++||+||+.++...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998766543 345544333 233333 3789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
++++.++.....++..+ ......+.|+++++||+|+.+.. ...++.+... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988877766655443 22222468999999999986432 2233322211 1124699999999999999999
Q ss_pred HHHH
Q 028792 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=6.3e-27 Score=164.70 Aligned_cols=151 Identities=25% Similarity=0.406 Sum_probs=118.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|+|||||++++.+... ....++.+... ..+.+.. +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 33444554333 3344444 789999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++++++.....++..+.... ..+.|+++++||+|+.... ..++..+.... ..++++++||++|.|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999998888777665432 3578999999999987543 23334333322 346799999999999999999
Q ss_pred HHHH
Q 028792 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-28 Score=168.97 Aligned_cols=172 Identities=30% Similarity=0.572 Sum_probs=161.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.+.++.+|++|+|..++||||+|++++.+-+...+..+++.++....+.+.+..+++.+||++|+++++.....+++.+.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 36788899999999999999999999999988899999999888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+.++||+.+|+.+|+....|++.+..... .+|.++|-||+|+.+...+...+++.+++.++..++.+|++...++..+|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999988776 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028792 163 MAMAASIKNRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
..|.+.+.++..+
T Consensus 174 ~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876655
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=7.2e-26 Score=175.84 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-------hchhhhccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 81 (203)
..|+++|.||||||||+++|.+........+.++.......+.+.+ ...+.+||+||... ....+...+..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5689999999999999999997654333334444455555555522 25689999999642 122233345679
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
+++++|+|+++.++++.+..|...+..+.. .++|+++|+||+|+.+......+....+....+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988888999999998877643 368999999999987654443344555555667899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.4e-25 Score=169.54 Aligned_cols=142 Identities=24% Similarity=0.495 Sum_probs=121.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-------------GKTIKLQIWDTAGQERF 70 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 70 (203)
+....+||+++|..|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.|||++|++++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 44567999999999999999999999998888888898888776666654 24688999999999999
Q ss_pred chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---cC
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS------------ENVNKLLVGNKCDLTANK---V---VS 132 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~ 132 (203)
..++..++.++|++|+|||++++.+++.+..|+..+..... .+.|++||+||+|+...+ . ..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999976531 248999999999996542 2 35
Q ss_pred HHHHHHHHHHcCC
Q 028792 133 YETAKAFADEIGI 145 (203)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (203)
.++++++++++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7889999999873
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=6.4e-26 Score=161.08 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---------hhhccccC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSSYYRG 80 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~ 80 (203)
+|+++|.+|+|||||+++|.+..+.....+..+.+.....+..+ .+.+++|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999877643322222223333333333 37899999999732110 01111233
Q ss_pred CcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 81 AHGIIVVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
+|++++|+|++++.+ ++....|+..+.... .+.|+++++||+|+....... +..++....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 689999999998765 355566777765443 368999999999987543332 244555555688999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.1e-25 Score=157.90 Aligned_cols=152 Identities=26% Similarity=0.447 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
.|+++|++|+|||||+++|.+..+...+.++.+..+. .+..++ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999888877777765543 333444 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHHHHHH
Q 028792 90 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++++++.....++..+... ...+.|+++|+||+|+.+... .+...... ....++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99998888887776665432 224689999999999865422 22222221 12236789999999999999999
Q ss_pred HHHH
Q 028792 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.1e-25 Score=160.15 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhcc---ccCCc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGAH 82 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 82 (203)
+|+++|.+|+|||||+++|.+........+..+.......+..++. ..+.+||+||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999975542222122222222333334432 4789999999632 11222222 34699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCH
Q 028792 83 GIIVVYDVTDQ-ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNV 158 (203)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 158 (203)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888866542 36899999999998664433 3334445555 3688999999999999
Q ss_pred HHHHHHHHHH
Q 028792 159 EQAFMAMAAS 168 (203)
Q Consensus 159 ~~~~~~l~~~ 168 (203)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=9.5e-25 Score=155.82 Aligned_cols=157 Identities=24% Similarity=0.362 Sum_probs=116.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....++|+++|++|+|||||+++|.+..+.. +.++.+ +....+..++ ..+.+||+||...+...+..++..+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 34557999999999999999999999876532 334444 3333444555 678999999998888888888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKSATN 157 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~g 157 (203)
+++|+|+++..++.....++..+... ...+.|+++++||+|+.+.. ..+++.+...... .+++++||++|+|
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 99999999988888777666555332 23468999999999986532 1222222211111 2478999999999
Q ss_pred HHHHHHHHHH
Q 028792 158 VEQAFMAMAA 167 (203)
Q Consensus 158 i~~~~~~l~~ 167 (203)
++++|+||.+
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=9.4e-25 Score=152.86 Aligned_cols=158 Identities=34% Similarity=0.525 Sum_probs=125.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||+++|.....+..+.++.+.++....+..++..+.+.+||+||+..+...+..++..++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998887777777887777777677777668899999999988888888888999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 88 YDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 88 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|.... .++.... .+...+......+.|+++++||.|+.... ...+....+......+++++||++|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 5655554 56666655544478999999999986543 23333333444445789999999999999999987
Q ss_pred H
Q 028792 166 A 166 (203)
Q Consensus 166 ~ 166 (203)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=4.3e-25 Score=158.44 Aligned_cols=154 Identities=24% Similarity=0.332 Sum_probs=111.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCCCccc------cceeeEEEEEE--E---CCeEEEEEEEeCCChhhhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS-------YLESYIST------IGVDFKIRTVE--Q---DGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+++|||||+++|++.. +...+.++ .+.++....+. + ++..+.+++|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 11122121 12233322222 2 5667889999999999998
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---CEE
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---PFM 148 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 148 (203)
..+..++..+|++|+|+|+++..+......|.... ..+.|+++|+||+|+.+.. ..+...++++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88888999999999999999876655555554322 2368999999999986432 12223455555565 489
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028792 149 ETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
++||++|+|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=2.8e-25 Score=162.73 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=113.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (203)
+..++|+|+|++|||||||+++|.+........+..+.+.....+..++. ..+.+||+||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 45689999999999999999999987643322222333333444444442 3688999999632 11111 2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... .+....+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998888777777777766554568999999999986543221 3444556789999999999
Q ss_pred CHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 gi~~~~~~l~~~ 168 (203)
|+++++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999999765
No 135
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-25 Score=152.67 Aligned_cols=159 Identities=25% Similarity=0.420 Sum_probs=131.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|-.++||||++++|..++.... .||++ +....+.+.+ +.+++||.+|+..++..|..++++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4679999999999999999999987776555 56666 6666777765 89999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 159 (203)
||+|.+|++.+.+.+..+..+....+ ...|+++++||.|+... ++..++.+..... ...+..|+|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999998886666655544 57999999999998754 4445544443333 3568899999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKN 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
+.++||.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.4e-24 Score=153.35 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS---YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+...+ ...+.+|||||++++.......+..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999642 3333333444444444444441 257899999999888776677788999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCCEEEEecCCCCC
Q 028792 86 VVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADE---IGIPFMETSAKSATN 157 (203)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 157 (203)
+|+|+++ +++...+ ..+... ...|+++++||+|+..... ...++..++.+. .+.+++++||++++|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3332222 222222 1248999999999865421 112334444444 357899999999999
Q ss_pred HHHHHHHHHH
Q 028792 158 VEQAFMAMAA 167 (203)
Q Consensus 158 i~~~~~~l~~ 167 (203)
+++++..+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.2e-24 Score=150.46 Aligned_cols=134 Identities=24% Similarity=0.297 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh-----hhchhhhccccCCcEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI 84 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 84 (203)
||+++|++|+|||||+++|.+.... +.++.+.+ +.. .+||+||.. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999987642 22332221 211 589999972 233332 347899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 163 (203)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.+. ....+...++++..+. +++++||++|.|++++|.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887644 2333221 2499999999998652 3455667777777775 899999999999999999
Q ss_pred HHH
Q 028792 164 AMA 166 (203)
Q Consensus 164 ~l~ 166 (203)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=6.8e-24 Score=164.70 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh----chhh---hccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTIT---SSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~~ 81 (203)
..|+++|.|+||||||+++|..........+.++.......+.+++ ...+.+||+||.... ..+. ...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999997654333223333444444555443 257899999996421 1222 2335679
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 82 HGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 82 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
+++++|+|+++. ++++.+..|.+++..+.. .+.|+++|+||+|+..... ..+....+.+..+.+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 677888888888766543 4689999999999875432 2333445566667899999999999
Q ss_pred CHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASI 169 (203)
Q Consensus 157 gi~~~~~~l~~~~ 169 (203)
|+++++.+|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=153.61 Aligned_cols=171 Identities=39% Similarity=0.604 Sum_probs=138.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|++|+|||||+++|..+.+...+.++.+..+........+..+.+.+||++|+.++...+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999988888877777777766657889999999999999999999999999999
Q ss_pred EEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCCEEEE
Q 028792 87 VYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEI---GIPFMET 150 (203)
Q Consensus 87 v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 150 (203)
|+|..+.. +.+....|...+........|+++++||+|+.... ....+......... ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999955 45556668888877765578999999999997653 22222222222222 3348999
Q ss_pred ecC--CCCCHHHHHHHHHHHHHHHhccCC
Q 028792 151 SAK--SATNVEQAFMAMAASIKNRMASQP 177 (203)
Q Consensus 151 Sa~--~~~gi~~~~~~l~~~~~~~~~~~~ 177 (203)
|++ .+.++.++|..+...+.+......
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 999 999999999999999976554444
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.5e-23 Score=145.55 Aligned_cols=153 Identities=56% Similarity=0.907 Sum_probs=121.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792 13 LIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
++|++|+|||||+++|.+... .....++. .+..............+.+||+||...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444555 6666677776667789999999999888887788899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 92 DQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTANKVVSYET-AKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 92 ~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
++.++.....|+ .........+.|+++++||.|+.......... .........++++++|+.++.|+.+++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888763 22333344579999999999987654433322 3344555568999999999999999999985
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1e-24 Score=150.85 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcc--ccC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSY--YRG 80 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~--~~~ 80 (203)
++|+++|.||+|||||+|+|.+.+......|..+.+.....+...+ ..+.++|+||.-... .....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999886655567777777777777777 678899999943221 122223 368
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
.|++++|+|++..+.- ..+...+. ..+.|+++++||+|......+.. ....+.+.++++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875432 22222233 23799999999999865443322 35667778899999999999999999
Q ss_pred HHHHH
Q 028792 161 AFMAM 165 (203)
Q Consensus 161 ~~~~l 165 (203)
+++.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98865
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=6.1e-24 Score=150.80 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.|+++|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877666544444444443444443 12467899999999888888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCCEEEEecCCCCCHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAFAD------EIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~ 161 (203)
|+++....... ..+..+.. .+.|+++|+||+|+....... .+....+.. ...++++++|+++|+|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99875321111 11222222 368999999999986432111 111111111 11368999999999999999
Q ss_pred HHHHHHHHH
Q 028792 162 FMAMAASIK 170 (203)
Q Consensus 162 ~~~l~~~~~ 170 (203)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=7.7e-24 Score=148.77 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=110.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhccc--cCCcEE
Q 028792 13 LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGI 84 (203)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~ 84 (203)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||...+.. .+..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765555555555666666666766 5789999999876543 234455 489999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|+|+++++... .+...+.. .+.|+++++||+|+.+...... ....+....+.+++++||.++.|+++++.+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 33333332 3689999999999976544433 345677777899999999999999999999
Q ss_pred HHHH
Q 028792 165 MAAS 168 (203)
Q Consensus 165 l~~~ 168 (203)
|...
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 9875
No 144
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.6e-24 Score=139.54 Aligned_cols=157 Identities=22% Similarity=0.424 Sum_probs=127.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
++++|+.+|-.++||||++.+|..+... ...||++ +....+.+.+ +.|++||.+|++..+.+|++++....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4799999999999999999999876532 3345555 6777777766 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 160 (203)
|+|..+.+.+++.++.+..+....+ ...|+++++||.|+... +..+++..+.+.. +..+.+++|.+|+|+.|
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999988888875555433332 57899999999999865 5566666665443 35689999999999999
Q ss_pred HHHHHHHHHH
Q 028792 161 AFMAMAASIK 170 (203)
Q Consensus 161 ~~~~l~~~~~ 170 (203)
.|.||.+.+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999988653
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2.1e-23 Score=163.36 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=112.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (203)
+..++|+++|.+|+|||||+|+|.+........+..+.++....+...+. ..+.+|||+|..+ +... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 34589999999999999999999987654333334444555666666432 4789999999722 2221 12
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+.++|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+... ..... ....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCC
Confidence 478899999999999998877777676666655445689999999999864321 21111 223468999999999
Q ss_pred CHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 gi~~~~~~l~~~ 168 (203)
|+++++.+|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=156.69 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=104.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhch
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRT 72 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~ 72 (203)
.....++|+++|.+|+|||||+++|.+..+.....++.+ .....+... .+.+||+|| .+++..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 334678999999999999999999998776554444443 333333333 488999999 445555
Q ss_pred hhhccc----cCCcEEEEEEeCCChhhH----H------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 028792 73 ITSSYY----RGAHGIIVVYDVTDQESF----N------NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA 138 (203)
Q Consensus 73 ~~~~~~----~~~d~~i~v~d~~~~~s~----~------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 138 (203)
.+..++ ..++++++|+|.++...+ . .-..+...+. ..+.|+++|+||+|+.+.. .+...+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence 444444 346788999998653221 0 0011122222 2368999999999986543 234455
Q ss_pred HHHHcCC---------CEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 139 FADEIGI---------PFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 139 ~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+...++. +++++||++| |+++++++|.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 5555554 5899999999 999999999987643
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=5.8e-24 Score=141.15 Aligned_cols=160 Identities=26% Similarity=0.420 Sum_probs=127.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+.+.++|-.++|||||+|....+.+.....|+.+ +....+.- +.+.+.+||.||+.+++.+|..+++.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tk--gnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEecc--CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 357899999999999999999999888888888887 44444444 44889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 160 (203)
|+|+.|++.+...+..+..+... ...+.|+++++||.|+... .....+.+-.... .+-.|.+|+++..+++.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 99999999888777755555433 3468999999999998754 3333332222222 24588999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 161 AFMAMAASIKNR 172 (203)
Q Consensus 161 ~~~~l~~~~~~~ 172 (203)
+.+||++.....
T Consensus 173 ~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 173 TLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHhhhh
Confidence 999999876543
No 148
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4.6e-23 Score=166.03 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh----c---hhhhccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----R---TITSSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~ 81 (203)
..|+|+|.||||||||+++|++.+......+.++.......+...+ ..+.+||+||.... . ......+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999997654433334455555556666665 67899999995321 1 1122346789
Q ss_pred cEEEEEEeCCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792 82 HGIIVVYDVTD----QESFNNVKQWLNEIDRYA-----------SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146 (203)
Q Consensus 82 d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 146 (203)
|++++|+|+++ ++.+..+..+...+..+. ..+.|.++|+||+|+.+.... .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 99999999985 335555555655554443 136899999999998654332 22233334455789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792 147 FMETSAKSATNVEQAFMAMAASIKNRMASQP 177 (203)
Q Consensus 147 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~ 177 (203)
++++||++++|+++++.+|.+.+.+.+...+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~ 347 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARAAEP 347 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999988766543
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.3e-23 Score=152.80 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD--DSYLESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT 74 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (203)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+......+.+||+||+.++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443322 1223333444444444455889999999999999999
Q ss_pred hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCC
Q 028792 75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV-VSYETAKAFAD-------EIGIP 146 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 146 (203)
..++..+|++++|+|+++.. ......++..+. ..+.|+++++||+|+..... ...+++.++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 222233333332 23689999999999865322 12334444442 23678
Q ss_pred EEEEecCCCCCHHHH------HHHHHHHHHH
Q 028792 147 FMETSAKSATNVEQA------FMAMAASIKN 171 (203)
Q Consensus 147 ~~~~Sa~~~~gi~~~------~~~l~~~~~~ 171 (203)
++++||++|.|+.++ +++|.+.+.+
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHh
Confidence 999999999988654 4555555543
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.4e-23 Score=150.03 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=106.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhh----chh---hhccccCCcEE
Q 028792 13 LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF----RTI---TSSYYRGAHGI 84 (203)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~ 84 (203)
++|++|||||||+++|.+........+..+.+.....+..+ + ..+.+||+||.... ... ....+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999876422212222233333344444 4 56899999996321 112 12346789999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792 85 IVVYDVTDQ------ESFNNVKQWLNEIDRYAS-------ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 85 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
++|+|++++ .++.....|...+..... .+.|+++|+||+|+..................+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777776654332 3689999999999976544333222334444567899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAAS 168 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~ 168 (203)
|+++.|++++++++...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-23 Score=171.39 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=117.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChh----------hhchhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 74 (203)
+..++|+++|.+|+|||||+++|++.... ....++++.+.....+..++ ..+.+|||||.. .+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999987643 33345555555556666776 456799999952 222222
Q ss_pred -hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHcCCCEEEE
Q 028792 75 -SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKA-FADEIGIPFMET 150 (203)
Q Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 150 (203)
..++..+|++++|+|++++.++.... ++..+. ..+.|+++|+||+|+.+.... ..+++.. +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23568999999999999887766553 233332 247899999999999653211 1112222 222234789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhccCCCC
Q 028792 151 SAKSATNVEQAFMAMAASIKNRMASQPAS 179 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~ 179 (203)
||++|.|++++|..+.+.+.++..+.+.+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTG 391 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence 99999999999999999887766665543
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=9.9e-23 Score=142.77 Aligned_cols=146 Identities=22% Similarity=0.258 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhcccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (203)
++|+++|++|+|||||++++.+..... ...++.+.++....+..++ ..+++||+||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 2233444444445555554 6789999999654422 1234567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .......+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777655444322 336899999999998764433 334446789999999999999
Q ss_pred HHHHHHHHHH
Q 028792 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
+++.+|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 153
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.5e-22 Score=161.02 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhc---cccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 81 (203)
..|+++|.|+||||||+++|++.+......+.++.......+.++. ...+.+||+||... ...+... .+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3799999999999999999997664333334444444444444441 25789999999632 1122233 35669
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 82 HGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 82 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
+++++|+|+++. +.++.+..|.+.+..+.. .++|+++|+||+|+... .+....+.+..+.+++++||++++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999865 567777788888876643 36899999999998432 344556666666889999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028792 157 NVEQAFMAMAASIKNRM 173 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~ 173 (203)
|+++++.+|.+.+.+..
T Consensus 314 GI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 314 GLDELLYAVAELLEETP 330 (424)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999998887654
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=6.8e-23 Score=166.98 Aligned_cols=179 Identities=22% Similarity=0.232 Sum_probs=121.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (203)
...+|+|+|.+|||||||+++|++.... ....++++.+.....+.+++ ..+.+|||||... +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4479999999999999999999987643 23344455555555556666 5688999999652 33345557
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+..+|+++||+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+ ..++. ..+. .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~-~~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---AD-AAALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hh-hHHHH-hcCCCCeEEEEcCCCC
Confidence 889999999999998765432 233333432 368999999999986421 11 12221 2333 46799999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
|++++|++|.+.+.+.... ........+...-+.++.+||
T Consensus 186 gi~eL~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~~nvGKS 225 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRV--GSASGGPRRVALVGKPNVGKS 225 (472)
T ss_pred CcHHHHHHHHhhccccccc--ccccccceEEEEECCCCCCHH
Confidence 9999999999887542211 111234566666777766665
No 155
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.4e-22 Score=154.36 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--------hhhhccccC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG 80 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 80 (203)
+|+++|.||+|||||+|+|.+....... .+.++..........++ .++.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 5899999999999999999988754322 22222222222222233 568999999964321 112345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 159 (203)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+...... .+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876653 333333332 36899999999998643221 2233444444443 79999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
+++++|.+.+.
T Consensus 154 ~L~~~l~~~l~ 164 (270)
T TIGR00436 154 FLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHhCC
Confidence 99999988764
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.7e-22 Score=161.27 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=115.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3489999999999999999999986532 23335555666667777777 56789999997544322 2346
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
+..+|++++|+|++++.+++.. |+..+. ..+.|+++|+||+|+... +...+.+..+.+++++||++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988876654 544442 236899999999998643 12344566678899999997 69
Q ss_pred HHHHHHHHHHHHHHHhc
Q 028792 158 VEQAFMAMAASIKNRMA 174 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~ 174 (203)
++++|+.|.+.+.+...
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998876543
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=9.5e-23 Score=164.95 Aligned_cols=166 Identities=23% Similarity=0.227 Sum_probs=113.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-----------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------- 73 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (203)
...++|+++|.+++|||||+++|++.... ....+.++.+.....+..++ ..+.+|||||..+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999976532 22233444444445555555 46889999996543221
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEE
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFM 148 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~ 148 (203)
....+..+|++++|+|++++.+..... ++..+ ...+.|+++|+||+|+.+.. ...++... +... ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 123578899999999999876654433 22222 22368999999999987221 11222222 2122 247899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhccCCC
Q 028792 149 ETSAKSATNVEQAFMAMAASIKNRMASQPA 178 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~ 178 (203)
++||++|.|++++|+++.+.+.++..+.+.
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 999999999999999999988766555443
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=3.1e-22 Score=156.50 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=107.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchh-------hhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI-------TSS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~ 76 (203)
.+.++|+++|.+|||||||+|+|.+..+... ..+.++.......+..++ .++.+|||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4567999999999999999999998876421 112222334444455555 5789999999743 2211 112
Q ss_pred cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAK 153 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 153 (203)
.+..+|+++||+|..+ ++.... .++..+... +.|.++|+||+|+... ...++.+++.... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 3678999999999765 333333 344444322 4677889999998643 2345555555544 579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028792 154 SATNVEQAFMAMAASIKN 171 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~~~ 171 (203)
+|.|++++|++|.+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999886654
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.8e-22 Score=145.72 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----------------ccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYIS----------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
+|+++|.+|+|||||+++|.+......... ..+.......+...+ ..+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 489999999999999999997765543311 122223333333433 67899999999888888
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADE--------- 142 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~--------- 142 (203)
+...+..+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ..+.+.+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888899999999999987654322 223333322 46899999999998753221 12233333332
Q ss_pred -----cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 143 -----IGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 143 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
...+++++||++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346899999999999999999998875
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2e-22 Score=162.84 Aligned_cols=148 Identities=23% Similarity=0.269 Sum_probs=111.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY 78 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 78 (203)
.++|+++|.+|+|||||+|+|.+.... ....+..+.++....+.+++ ..+.+|||||...+... ....+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 489999999999999999999987642 23344555566666677776 56899999997654322 22357
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 88999999999998877665443332 3368999999999986533221 334578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.1e-22 Score=146.19 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCC---CCccccceeeEEEEEEEC------------CeEEEEEEEeCCChhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD----SYLE---SYISTIGVDFKIRTVEQD------------GKTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 69 (203)
++|+++|++++|||||+++|... .+.. ...+..+.+.....+.+. +....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1111 111222223322222222 2357899999999866
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH------
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFAD------ 141 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~------ 141 (203)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444434456789999999998754333222221 1111 25799999999998643221 1222222211
Q ss_pred -HcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 142 -EIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 142 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
..+++++++||++|+|+++++++|.+.+
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 1357899999999999999999998876
No 162
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.6e-22 Score=135.64 Aligned_cols=114 Identities=34% Similarity=0.611 Sum_probs=87.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYL--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
||+|+|++|||||||+++|.+.... ....+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 12223344445555566666666799999999988888777789999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028792 88 YDVTDQESFNNVKQW---LNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~iiv~nK~D 124 (203)
||+++++++..+..+ +..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999988665 44444433 3599999999998
No 163
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-21 Score=130.71 Aligned_cols=167 Identities=23% Similarity=0.368 Sum_probs=136.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCccccceeeEEEEEE-ECCeEEEEEEEeCCChhhh-chhhhcccc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL--ESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQERF-RTITSSYYR 79 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-~~~~~~~~~ 79 (203)
.-.+..+|+++|..++|||++++.|+.+... ..+.+|++.. +...+. ..+-.-.++++||.|...+ ..+.+++++
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 3456789999999999999999999854432 3445666533 333333 3444456899999997766 667788999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
-+|++++||+..|++||..+..+...|.+... ...|+++++||.|..++..+..+-+..|++...+..+++++.+...+
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999999988887777776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
-+-|..|...+.+
T Consensus 164 ~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 164 YEPFTYLASRLHQ 176 (198)
T ss_pred hhHHHHHHHhccC
Confidence 9999999887754
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=2.7e-22 Score=140.65 Aligned_cols=146 Identities=19% Similarity=0.145 Sum_probs=100.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhccccCCc
Q 028792 12 LLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGAH 82 (203)
Q Consensus 12 ~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 82 (203)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+||+||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976422 11223333334444555555 6789999999776433 3345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 161 (203)
++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443322 22222322 25899999999998754322 222334555 7899999999999999
Q ss_pred HHHHHHH
Q 028792 162 FMAMAAS 168 (203)
Q Consensus 162 ~~~l~~~ 168 (203)
|++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=5.7e-22 Score=158.61 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=111.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh--chhhh------cccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTITS------SYYR 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~ 79 (203)
..+|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|..+. ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987654333334444555555555442 25789999997331 22222 2358
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-EEEEecCCCCCH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKSATNV 158 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 158 (203)
.+|++++|+|++++.++..+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988877776665555555445789999999999864311 1111 1123445 589999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
++++++|.+.+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998854
No 166
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=4.8e-22 Score=133.28 Aligned_cols=173 Identities=26% Similarity=0.480 Sum_probs=149.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.-.+||.++|++..|||||+-++.++.+...+..+.+..+..+.+.+.+-.+.+.|||.+|++++..+......++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34689999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-----HHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-----YETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
|+||++.+.++..+..|+++.+.......| |+|++|.|..-.-... ....+.+++-.+++.+.||+..+.++..
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999999888776666 5689999964321111 1235667888899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 028792 161 AFMAMAASIKNRMASQPAS 179 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~ 179 (203)
+|.-+...+.+..-..|..
T Consensus 177 IFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673|consen 177 IFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred HHHHHHHHHhCCceecccc
Confidence 9999998888765555543
No 167
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.5e-21 Score=154.57 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 81 (203)
..|+|+|.||||||||+|+|++.+......+.++.......+...+ ...+.++|+||...-. ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999997665433344444445555555442 1358899999964311 1122347889
Q ss_pred cEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCC
Q 028792 82 HGIIVVYDVT---DQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKS 154 (203)
Q Consensus 82 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 154 (203)
|++++|+|++ +.+.+..+..|++.+..+.. .+.|+++|+||+|+.....+ .+.+.++.+..+ .+++++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 45567777778777766532 35899999999998654332 233444555444 4799999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~~ 172 (203)
+.|+++++++|.+.+.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999999988654
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=6.2e-22 Score=139.19 Aligned_cols=142 Identities=23% Similarity=0.266 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh----hhchhhhccccCCcEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGII 85 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 85 (203)
+|+++|.+|+|||||+++|.+.... ...+. .+.+... .+||+||.. ++.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998864311 11111 1222221 269999962 22222223468999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--CEEEEecCCCCCHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--PFMETSAKSATNVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~ 163 (203)
+|+|+++.+++. ..|+..+ ..+.|+++++||+|+.. ...+...+++...+. +++++||++|+|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999877642 2232222 12578999999999854 234566677777774 899999999999999999
Q ss_pred HHHHHHHHHh
Q 028792 164 AMAASIKNRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
+|.+.+.+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9988775443
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=1.3e-21 Score=161.88 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=113.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+..+|+++|++++|||||+++|.+..+.....++++.+.....+.+++. ..+.+|||||+..|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46689999999999999999999988776655555555555555655442 26899999999999988888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CCEEEEecCCCC
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKSAT 156 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 156 (203)
+|+|+++....... ..+......+.|+++++||+|+... ..+.+.+..... + .+++++||++|+
T Consensus 164 LVVda~dgv~~qT~----e~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTI----EAISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHH----HHHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999864221111 1122222346899999999998642 223333333222 2 479999999999
Q ss_pred CHHHHHHHHHH
Q 028792 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 gi~~~~~~l~~ 167 (203)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.8e-21 Score=138.42 Aligned_cols=155 Identities=25% Similarity=0.250 Sum_probs=103.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----------hhh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS 75 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 75 (203)
.++|+++|.+|+|||||+++|++..... ...+..+.......+..++ ..+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999865322 2223333333334445555 4578999999643211 112
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHHc----CCCEEEE
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADEI----GIPFMET 150 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~ 150 (203)
..+..+|++++|+|++++.+..... +...+. ..+.|+++++||+|+........+...+ +.+.. ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999876644332 222222 2368999999999987653222222222 22222 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~ 168 (203)
||++++|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.1e-21 Score=141.20 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=105.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhchhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 74 (203)
.+..++|+++|.+|+|||||+++|.+..+.....++.+.+........ ...+.+||+||. ..+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 456789999999999999999999987644443344433333332222 257899999994 2333333
Q ss_pred hccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCCEEE
Q 028792 75 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFME 149 (203)
Q Consensus 75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 149 (203)
..++.. .+++++++|.+++.+.... .+...+. ..+.|+++++||+|+.+..... .+.+.+.......++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 444443 4688889998765443221 1112222 2368999999999986543221 22344444444689999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+||++++|++++++.|.+.+.
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987764
No 172
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=3.1e-21 Score=160.22 Aligned_cols=157 Identities=21% Similarity=0.309 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCcc------ccceeeEEEE--EEE---CCeEEEEEEEeCCChhh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YLESYIS------TIGVDFKIRT--VEQ---DGKTIKLQIWDTAGQER 69 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~ 69 (203)
.-+|+++|+.++|||||+++|+... +...+.. ..+.++.... +.+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 1111111 1133333322 323 45668999999999999
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---C
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---P 146 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 146 (203)
+...+...+..+|++|+|+|+++..+......|...+. .+.|+++|+||+|+.... ..+...++...++. .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98888899999999999999998766555555544332 367999999999986432 12223445555555 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 028792 147 FMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 147 ~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
++++||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988663
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.7e-21 Score=156.51 Aligned_cols=176 Identities=21% Similarity=0.237 Sum_probs=117.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCh--------hhhchhhhccccC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITSSYYRG 80 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 80 (203)
+|+++|.+|||||||+|+|.+..... ...+..+.+.....+.+++ ..+.+|||||. ..+.......+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876422 2234444455555666666 56899999995 3344455667899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 159 (203)
+|++++|+|+.+..+... ..+...+.. .+.|+++|+||+|+...... ..+ +..++. +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987543222 122222332 26899999999998654321 122 335565 79999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 160 QAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
++++++.+.+...... ........+...-+.++.+||
T Consensus 150 ~ll~~i~~~l~~~~~~--~~~~~~~~~v~ivG~~~~GKS 186 (429)
T TIGR03594 150 DLLDAILELLPEEEEE--EEEEDGPIKIAIIGRPNVGKS 186 (429)
T ss_pred HHHHHHHHhcCccccc--ccccCCceEEEEECCCCCCHH
Confidence 9999998876432211 111233345555566655554
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.8e-21 Score=138.06 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=96.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh----------hhchhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 74 (203)
....++|+++|.+|+|||||+++|.+..+.....++.+.+.....+..++ .+.+||+||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46778999999999999999999998764333333333333333333333 58899999942 233333
Q ss_pred hcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--CCE
Q 028792 75 SSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIG--IPF 147 (203)
Q Consensus 75 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~ 147 (203)
..++. .+|++++|+|++++.+.... .++..+. ..+.|+++++||+|+..... ...+++++.....+ .++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~---~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR---ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 33443 46899999999875543333 2223332 23689999999999865322 22344455555543 489
Q ss_pred EEEecCCCCCHH
Q 028792 148 METSAKSATNVE 159 (203)
Q Consensus 148 ~~~Sa~~~~gi~ 159 (203)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999973
No 175
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.87 E-value=8.2e-24 Score=145.84 Aligned_cols=192 Identities=34% Similarity=0.569 Sum_probs=159.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-EEEEEEeCCChhhhchhhhccccCCc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT-IKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
..+..++++|+|.-|+|||+++++++...++..|..+++.++......++..+ +++.+||+.|++++..+..-+++.+.
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 34678999999999999999999999999999999999998888888776654 67899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVS-YETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+.++|||++..-+|+....|.+.+..... ...|+++..||+|+....... .....++.+.++. .++++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999999855422 246779999999986543333 4567788888884 79999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCC
Q 028792 157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN 195 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (203)
+++|+-..|++.+...-.+.+.+...+...+..+-.+..
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s 219 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPS 219 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCcccccccccccCccccCcc
Confidence 999999999999998887766666555555544444433
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.7e-21 Score=155.93 Aligned_cols=174 Identities=22% Similarity=0.231 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR 79 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 79 (203)
++|+++|.+|||||||+++|.+.... ....+..+.+.....+.+++ ..+.+|||||... +.......+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22234444555556666766 7789999999765 2233455678
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 80 GAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
.+|++++|+|+.++.+.. .+..|+ .. .+.|+++|+||+|+.+. .+...++ ...+. .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKIL---RK---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754432 222332 22 26899999999996531 1223333 34455 48999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
|++++++++....... ...............+.++.+||
T Consensus 149 gv~~l~~~I~~~~~~~---~~~~~~~~~~~v~ivG~~n~GKS 187 (435)
T PRK00093 149 GIGDLLDAILEELPEE---EEEDEEDEPIKIAIIGRPNVGKS 187 (435)
T ss_pred CHHHHHHHHHhhCCcc---ccccccccceEEEEECCCCCCHH
Confidence 9999999998732211 11111233455556666665554
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=6.2e-21 Score=147.01 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=104.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhh--------chhhhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 77 (203)
+.-.|+++|.||||||||+|+|++........ +.++..........+ ..++.++||||.... .......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 44579999999999999999999877643322 222211111122222 268999999996432 1223345
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSAT 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 156 (203)
+..+|++++|+|+++..+- .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6889999999999873221 1122222222 2358999999999997432222334445554444 679999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIK 170 (203)
Q Consensus 157 gi~~~~~~l~~~~~ 170 (203)
|+++++++|.+.+.
T Consensus 158 gv~~L~~~L~~~l~ 171 (292)
T PRK00089 158 NVDELLDVIAKYLP 171 (292)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988764
No 178
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=2.8e-21 Score=151.25 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhhccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY 78 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (203)
..|+++|.||+|||||+|+|.+.+..- +..|.++.+.......+.+ ..|.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 579999999999999999999887654 3346677777777777777 56899999995532 23345567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCC
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATN 157 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
..||+++||+|....-+-.+ ....+.++ ..++|+++|+||+|-... .+...+| -.++ ..++++||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~~----e~~~~ef-yslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLKA----EELAYEF-YSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCchh----hhhHHHH-HhcCCCCceEeehhhccC
Confidence 89999999999976332111 11222233 235899999999996421 2223333 3445 5899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCCC
Q 028792 158 VEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 199 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
+.+++++++..+. .....+......+.+...-+.|..+||+
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs 193 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS 193 (444)
T ss_pred HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence 9999999999875 2222222222467888888888888774
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=6.9e-21 Score=161.08 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=113.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+...|+|+|..++|||||+++|....+.....+.++.+.....+.+++ ..+++|||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 35778999999999999999999988776655444455555555566665 6789999999999999888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-------HHHHcC--CCEEEEecCCC
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-------FADEIG--IPFMETSAKSA 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 155 (203)
|||+|+++... .++...+......+.|+++++||+|+.... .+.+.. +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~----~qT~e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVM----PQTIEAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCC----HhHHHHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999987422 111122222223468999999999986432 122211 122333 68999999999
Q ss_pred CCHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAAS 168 (203)
Q Consensus 156 ~gi~~~~~~l~~~ 168 (203)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999999764
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=6.4e-21 Score=158.23 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD---SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.|+++|.+++|||||+++|.+. .++.+..++++.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 34444455666666666666666 78899999999998888888889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCCEEEEecCCC
Q 028792 86 VVYDVTD---QESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFMETSAKSA 155 (203)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 155 (203)
+|+|+++ +++.+.+ ..+.. .+.| +++++||+|+.+.... ..+++.++.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 3443322 22222 2567 9999999999764322 123455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAASIKN 171 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~ 171 (203)
+|+++++.+|...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999998876654
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=5.7e-21 Score=160.34 Aligned_cols=157 Identities=19% Similarity=0.220 Sum_probs=111.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceee--EEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF--KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.+...|+|+|..++|||||+++|....+.....++.+.+. +...+..++....+.+|||||+..|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999998766554433333332 22333333445789999999999999999889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CCEEEEecCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAF-------ADEIG--IPFMETSAKS 154 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 154 (203)
+|+|+|+++......... +......+.|+++++||+|+.... .+.+.+. ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~----I~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA----INYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHH----HHHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 999999987432111111 222223468999999999986532 2222221 22233 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~ 169 (203)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998753
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.1e-20 Score=138.08 Aligned_cols=118 Identities=23% Similarity=0.387 Sum_probs=87.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC-cEEEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIVVY 88 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (203)
+|+++|++|||||||+++|..+.+...+.++ ............+....+.+||+||+.++...+..++..+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776654433 2222222222223346799999999999988888888888 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCC
Q 028792 89 DVTDQ-ESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 89 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~~ 128 (203)
|+.+. .++..+..++..+... ...+.|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6777766655544322 2247999999999998653
No 183
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=5.4e-21 Score=139.80 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccceeeEEEEEEEC---------------------------C----
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIGVDFKIRTVEQD---------------------------G---- 54 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (203)
++|+++|+.|+|||||+..|..... +.......+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 11111111111111111110 0
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--S 132 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~ 132 (203)
....+.+||+||+..+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267899999999988887777888999999999998732111111222222222 12478999999998653221 1
Q ss_pred HHHHHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 133 YETAKAFADEI---GIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.+.+.++.... +++++++||++|+|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23334444332 57899999999999999999998654
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=2.1e-21 Score=140.41 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=106.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
...+|+++|+.++|||||+.+|+...... +.....+.......+........++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999998433211 111222333334444411333789999999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHH-HHHHHc---
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAK-AFADEI--- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~-~~~~~~--- 143 (203)
.+.......+..+|++|+|+|+.+.-.. .....+..+.. .+.|+++++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 8888888889999999999999865332 12333333333 36889999999998721110 011122 233333
Q ss_pred ---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 144 ---GIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 144 ---~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.++++++||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999998765
No 185
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.1e-20 Score=133.43 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch--------hhhcccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (203)
..+|+++|++|+|||||+++|.+.................. .........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765432221111111111 11222336788999999643221 2334578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCCCH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNV 158 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 158 (203)
.+|++++|+|++++.+. ....+...+... +.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999986221 112222223222 57999999999987433222333444444443 68999999999999
Q ss_pred HHHHHHHHHH
Q 028792 159 EQAFMAMAAS 168 (203)
Q Consensus 159 ~~~~~~l~~~ 168 (203)
++++.+|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.3e-21 Score=155.55 Aligned_cols=164 Identities=25% Similarity=0.248 Sum_probs=110.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------h-
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------I- 73 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~- 73 (203)
...++|+++|.+|+|||||+++|++... .....+.++.+.....+..++ ..+.+|||||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999997653 223334444444444444555 5678999999532211 1
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----cCCCEE
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK-AFADE----IGIPFM 148 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~ 148 (203)
....+..+|++++|+|++++.+..... +...+. ..+.|+++++||+|+.+... .++.. .+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~---~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLAL---EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 123578899999999999876644432 222222 23689999999999874322 11121 12111 247999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792 149 ETSAKSATNVEQAFMAMAASIKNRMASQP 177 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~ 177 (203)
++||++|.|++++++.+.+...++..+.+
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~~~i~ 351 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENANRRIS 351 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence 99999999999999999887776655443
No 187
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-21 Score=133.76 Aligned_cols=160 Identities=28% Similarity=0.434 Sum_probs=122.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC---CC----CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDS---YL----ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (203)
..+.|+|+|..++|||||+.++-... +. ....+|.+ .....+..++ ..+.+||.+|++..+++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 34789999999999999999886322 11 12234444 3333444444 67899999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---Hc---CCCEEEEec
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD---EI---GIPFMETSA 152 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~---~~~~~~~Sa 152 (203)
.++++|+++|+++++.|.+....++.+ ......+.|+++.+||.|+.+. +...++..... .. ..++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchh
Confidence 999999999999999999877755544 4445578999999999998654 33344443333 22 368999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~ 172 (203)
.+|+|+++...|+...+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988766
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.2e-20 Score=160.36 Aligned_cols=165 Identities=22% Similarity=0.230 Sum_probs=114.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchh-h
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI-T 74 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 74 (203)
..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++. .+.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 223344445555555666764 467999999532 2111 1
Q ss_pred hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEEE
Q 028792 75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFME 149 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~ 149 (203)
...+..+|++++|+|+++..+...... +..+. ..+.|+++|+||+|+.+... .+.... +... ..+++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~---~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAV---DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHH---HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999998877665543 22232 23689999999999865322 122222 1111 1357899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhccCCCC
Q 028792 150 TSAKSATNVEQAFMAMAASIKNRMASQPAS 179 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~ 179 (203)
+||++|.|++++++.+.+.+.++..+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~ 630 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTG 630 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence 999999999999999999888766655553
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.7e-20 Score=159.48 Aligned_cols=181 Identities=20% Similarity=0.159 Sum_probs=116.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (203)
...+|+++|.+|+|||||+|+|++..... ...++.+.+.......+++ ..+.+|||||... +.......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34789999999999999999999865422 2234444444444445555 5788999999652 23334456
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+..+|+++||+|+++.-...+ ..+...+.. .+.|+++|+||+|+.... ....++. ..+. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence 789999999999976322111 134444432 478999999999985421 1222222 2232 46899999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 157 NVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
|+++++++|.+.+...............++....+.++.+||
T Consensus 423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKS 464 (712)
T PRK09518 423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKS 464 (712)
T ss_pred CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHH
Confidence 999999999998754221110001223456666677666665
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=9.9e-21 Score=157.25 Aligned_cols=146 Identities=20% Similarity=0.247 Sum_probs=108.9
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh------hhccc--cCCcEEEE
Q 028792 15 GDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGIIV 86 (203)
Q Consensus 15 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 86 (203)
|.+|+|||||+|+|.+........++.+.+.....+..++ ..+++||+||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776555556666666666666666 46789999998766443 22232 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|+|+++.+.. ..+...+. ..+.|+++++||+|+.+..... .+...+.+..+++++++||++|+|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875432 12222222 2368999999999986544443 346778888899999999999999999999998
Q ss_pred HHH
Q 028792 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 191
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.6e-22 Score=130.96 Aligned_cols=161 Identities=22% Similarity=0.356 Sum_probs=119.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|-.|+|||++..++..++.... .|+++ +....+.+.+ +++.+||.+|+...+..|+.++.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence 4889999999999999999988876554333 24444 5555555544 88999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH---HHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 86 VVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANKVVSY---ETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
+|+|.+|.+.+.-... ++..+......+..+++++||.|.......++ ....+-.+..-+.++++||.+|+|+++.
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 9999999987766555 44444333334578889999999864321111 1111112222368999999999999999
Q ss_pred HHHHHHHHHH
Q 028792 162 FMAMAASIKN 171 (203)
Q Consensus 162 ~~~l~~~~~~ 171 (203)
++||.+.+.+
T Consensus 171 ~DWL~~~l~~ 180 (182)
T KOG0072|consen 171 MDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.1e-20 Score=130.81 Aligned_cols=151 Identities=21% Similarity=0.166 Sum_probs=102.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-------hhhccccCCcEE
Q 028792 13 LIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------ITSSYYRGAHGI 84 (203)
Q Consensus 13 i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~ 84 (203)
++|++|+|||||+++|.+.... .......+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 22223333333333333321 35789999999655432 334577899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE---TAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
++|+|+++........ +.... ...+.|+++++||.|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877655443 22222 2246899999999998754322211 112223334578999999999999999
Q ss_pred HHHHHHH
Q 028792 162 FMAMAAS 168 (203)
Q Consensus 162 ~~~l~~~ 168 (203)
+.+|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999874
No 193
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=7.3e-21 Score=125.71 Aligned_cols=159 Identities=27% Similarity=0.392 Sum_probs=122.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++..++++|+++|-.++|||||++.|.+... ....||.+ +..+.+..++ ++++++||.+|+...+..|..++.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 4567899999999999999999999987553 33345554 6667776654 488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCC
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSAT 156 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 156 (203)
++|||+|.+|+-.|+++.+.+.++ ........|+.|+.||.|+...- ..+++..-+ ....+.+.+|||..++
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 999999999988888887755554 33344579999999999986432 222221111 1112568899999999
Q ss_pred CHHHHHHHHHH
Q 028792 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 gi~~~~~~l~~ 167 (203)
|+.+-.+|+..
T Consensus 166 g~~dg~~wv~s 176 (185)
T KOG0074|consen 166 GSTDGSDWVQS 176 (185)
T ss_pred CccCcchhhhc
Confidence 99999888764
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=1.1e-19 Score=154.47 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=110.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh----------hhcc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------TSSY 77 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 77 (203)
.++|+++|.||+|||||+|+|.+........+..+.+.....+.. ....++++|+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999976554333344444333334443 3477899999997655321 1122
Q ss_pred --ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 78 --YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 78 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
...+|++++|+|+++.+... .+...+.. .+.|+++++||+|+.+.+.. .....++.+.++++++++||++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 35799999999998865422 23333332 36899999999998754444 34567778889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAASI 169 (203)
Q Consensus 156 ~gi~~~~~~l~~~~ 169 (203)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887754
No 195
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=5.1e-20 Score=137.09 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=108.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhh--------chhhhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 77 (203)
+.--|+++|.||+|||||+|+|++.+.+-.+. +.++.......+..+ +.++.++||||...- .......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 45678999999999999999999988764433 333333333333333 478999999995432 2233445
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSAT 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 156 (203)
+..+|+++||+|+.+...- .-...++.+.. .+.|+++++||+|..............+..... ..++++||+.|.
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 7899999999999874331 11223333333 357999999999987654422233333333333 579999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIKNR 172 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~ 172 (203)
|++.+.+.+...+.+.
T Consensus 159 n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 159 NVDTLLEIIKEYLPEG 174 (298)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999988877653
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1.1e-19 Score=151.06 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=111.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
++.-+|+++|+.++|||||+.+|+... ... +.....+.......+.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 355689999999999999999998521 110 01111222222222222 455688999999999
Q ss_pred hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC-
Q 028792 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP- 146 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 146 (203)
..+...+...+..+|++++|+|+++.........|.... ..+.|+++|+||+|+..... .....++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence 999888888999999999999999865544444443322 23689999999999864321 22233444445543
Q ss_pred --EEEEecCCCCCHHHHHHHHHHHHH
Q 028792 147 --FMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 147 --~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
++++||++|.|+++++++|.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999988764
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=5.8e-20 Score=143.87 Aligned_cols=169 Identities=25% Similarity=0.176 Sum_probs=121.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-----------h
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T 74 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 74 (203)
..++|+|+|.|++|||||+|+|++.+.. ....+.++.+.....+.+++ -++.++||.|..+-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999987654 33345666666667777777 56779999995442221 1
Q ss_pred hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH----H-cCCCEEE
Q 028792 75 SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD----E-IGIPFME 149 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~----~-~~~~~~~ 149 (203)
...+..+|.+++|+|++.+-+- +...........+.+++|++||+|+.+......+....... . ..++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~----qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISE----QDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchH----HHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 2346789999999999987652 22222333344578999999999988764444443332222 1 2378999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhccCCCCCC
Q 028792 150 TSAKSATNVEQAFMAMAASIKNRMASQPASNN 181 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~ 181 (203)
+||++|.|+.++|+.+......+..+.+.+..
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence 99999999999999999988887766665543
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=4.8e-19 Score=131.86 Aligned_cols=151 Identities=23% Similarity=0.213 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCCc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH 82 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 82 (203)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998664333233333444455555666 678999999964322 12345678999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHH-----------------------------------------HHhh-----------
Q 028792 83 GIIVVYDVTDQE-SFNNVKQWLNE-----------------------------------------IDRY----------- 109 (203)
Q Consensus 83 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------l~~~----------- 109 (203)
++++|+|+++++ ....+...+.. +..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 22222222210 0000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 110 -----------A--SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 110 -----------~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
. ....|+++|+||+|+.. .++...++. ...++++||++|.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 12368999999999853 334444443 34699999999999999999998755
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=4.2e-19 Score=122.95 Aligned_cols=156 Identities=22% Similarity=0.316 Sum_probs=118.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------CC----ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE--------SY----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
..+..+|+|.|+.++||||++++++...... .. ..|+..++.... ..+ ...++++++||+.++.-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHHHH
Confidence 4567899999999999999999998765311 11 122232333222 222 25689999999999999
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCCEEEE
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMET 150 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~ 150 (203)
+|..+++.++++|+++|.+.+..+ .....++.+..... .|++|.+||.|+.+. .+.+.+.++.... .+++++.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999998887 44444444433321 899999999999865 5567777766665 7899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~ 168 (203)
+|.++++..+.+..+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888765
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.1e-19 Score=148.51 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=103.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----ccceeeEEEEEEE------------CCeEEEEEEEeCCChhhh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS----TIGVDFKIRTVEQ------------DGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~i~D~~g~~~~ 70 (203)
+..-|+++|.+++|||||+++|.+..+...... +.+..+....... ......+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 445799999999999999999998766433222 1221111111100 000123889999999999
Q ss_pred chhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------------CHHH
Q 028792 71 RTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV------------SYET 135 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~ 135 (203)
..++...+..+|++++|+|+++ +++++.+.. +. ..+.|+++++||+|+.+.... ..+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9988888999999999999987 444433322 22 236899999999998642100 0000
Q ss_pred H------------HHHHH------------Hc--CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 136 A------------KAFAD------------EI--GIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 136 ~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+ .++.+ .+ .++++++||++|+|+++++.+|......
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 0 01111 11 2689999999999999999998765443
No 201
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.2e-19 Score=140.98 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hcccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYYR 79 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~ 79 (203)
++++++|.||+|||||+|.|++....- ...+.++.++-...+.++| +.++++||.|..+..... ...+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 899999999999999999999877653 3457778888888888999 778899999976544332 33478
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
++|.++||+|++.+.+-.+.. . +. ....++|+++|.||.|+......... ....+.+++.+|+++|+|++
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~-~---~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLA-L---IE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLD 365 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHH-H---HH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHH
Confidence 999999999999863211111 1 11 33457899999999999765432111 11223479999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
.+.+.|.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887765
No 202
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.9e-20 Score=126.94 Aligned_cols=162 Identities=31% Similarity=0.579 Sum_probs=141.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-.++++++|..|.||||++++++.+++...+.+|++.+.....+.-+.+.+++..||+.|++.+..+...++-++.+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 37999999999999999999999999999999999988888877766667999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
+||+...-++.++..|...+.+... ++|+++.+||.|..... .......+....++.+++.||+.+.+...-|-||.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999999887776 59999999999975432 12334455566788999999999999999999999
Q ss_pred HHHHH
Q 028792 167 ASIKN 171 (203)
Q Consensus 167 ~~~~~ 171 (203)
+.+..
T Consensus 166 rKl~G 170 (216)
T KOG0096|consen 166 RKLTG 170 (216)
T ss_pred hhhcC
Confidence 88764
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=3.2e-19 Score=143.95 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=103.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CCCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYL-----------------------------ESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|+.++|||||+.+|+.. ... .+.....+.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45689999999999999999999842 111 11122344444444444444
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCccc-
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE--IDRYASENVNKLLVGNKCDLTANKVV- 131 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--l~~~~~~~~p~iiv~nK~D~~~~~~~- 131 (203)
..+.+||+||+..|.......+..+|++++|+|+++.++.. ..++... +..... ..|+++++||+|+.+....
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 78999999999887766666678999999999999874321 1111111 111111 3578999999999642211
Q ss_pred ---CHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792 132 ---SYETAKAFADEIG-----IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 163 (203)
..+++.++++..+ ++++++||++|+|+.+.+.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 1234556666654 5799999999999987553
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.5e-19 Score=123.77 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchhhhccc-
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSSYY- 78 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~- 78 (203)
.|+++|.+|+|||||++.|.+........++.+.+.....+..++ .+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444444444444444444443 788999999432 233333333
Q ss_pred --cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HcCCCEEEE
Q 028792 79 --RGAHGIIVVYDVTDQESF--NNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFAD--EIGIPFMET 150 (203)
Q Consensus 79 --~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 150 (203)
...+++++++|..+..+. ..+..|+ ... +.|+++++||+|+....... ........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 346789999998765321 1222232 222 47999999999985432211 112222222 234689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~ 168 (203)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999865
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.7e-19 Score=130.59 Aligned_cols=147 Identities=24% Similarity=0.195 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------CccccceeeEEEEEEECCeEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLES-------------------------------YISTIGVDFKIRTVEQDGKTIK 58 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
+|+++|.+++|||||+++|+...-... ..+..+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999974321100 112233333334444444 57
Q ss_pred EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CHH
Q 028792 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV----SYE 134 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~~ 134 (203)
+.+|||||+..+.......+..+|++++|+|++++..-. .......+... . ..++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 889999999887666666788999999999998753211 11122222222 1 2457778999998643221 122
Q ss_pred HHHHHHHHcC---CCEEEEecCCCCCHHHH
Q 028792 135 TAKAFADEIG---IPFMETSAKSATNVEQA 161 (203)
Q Consensus 135 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~~ 161 (203)
++.++....+ .+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3445555555 45999999999999854
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=5.3e-19 Score=142.74 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=100.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-------------------------------CCCccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-------------------------------ESYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (203)
..++|+++|++++|||||+++|+..... .+..+.++.+.....+..++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 5699999999999999999999832211 11123344444444444444
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV---- 130 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~---- 130 (203)
..+.+||+||+..+.......+..+|++++|+|++++..+. ....++..+... . ..|+++++||+|+.+...
T Consensus 84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 78999999998877665555578899999999998731211 112222222222 1 246899999999875221
Q ss_pred cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792 131 VSYETAKAFADEIG-----IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 163 (203)
...+++.++....+ ++++++||++|+|+++...
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234555555554 5799999999999998553
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=3.5e-18 Score=141.80 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=103.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----ccceeeEEEEEE--ECCeE-----E-----EEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS----TIGVDFKIRTVE--QDGKT-----I-----KLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~ 68 (203)
..|...|+++|.+++|||||+++|.+......... +.+..+...... ..+.. . .+++|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 35667899999999999999999986654322221 222111111110 00111 1 26899999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CH--------
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV----SY-------- 133 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~-------- 133 (203)
.|..++...+..+|++++|+|+++ ++++..+.. +. ..+.|+++++||+|+...... ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 999888888899999999999987 555443332 22 236899999999998532110 00
Q ss_pred H-----------HHHHHHHHc---------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 134 E-----------TAKAFADEI---------------GIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 134 ~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
. ++..+.... .++++++||++|+|+++++..+...+.
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0 011111111 267999999999999999998875443
No 208
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.2e-18 Score=139.53 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=104.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEE--E------------EE----EC------C
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIR--T------------VE----QD------G 54 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~--~------------~~----~~------~ 54 (203)
-++....++|+++|+.++|||||+.+|.+...+ .+.....+...... . +. .+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 345667799999999999999999999653211 11111222111110 0 00 00 0
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--S 132 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~ 132 (203)
....+++||+||+..+..........+|++++|+|++++.........+..+.... ..|+++++||+|+.+.... .
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHH
Confidence 12578999999998887666666677899999999986431111111222222221 2468999999998754322 1
Q ss_pred HHHHHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 133 YETAKAFADEI---GIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.+++..+.... +.+++++||++|+|+++++++|...+
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 23344444332 47899999999999999999988765
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=1.4e-18 Score=117.68 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----hhhchhhhccccCCcEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYRGAHGII 85 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 85 (203)
||+++|+.|+|||||+++|.+.... +..|.... +.+ .++||||. ..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999986652 22333222 111 35899993 233333444557899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 164 (203)
++.|++++.+.- .. .+... ...|+|-|+||+|+... ..+.+.+.++.+..|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~--pP---~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVF--PP---GFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccC--Cc---hhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 999999875411 01 11111 25799999999998732 3355667778888886 5899999999999999998
Q ss_pred HH
Q 028792 165 MA 166 (203)
Q Consensus 165 l~ 166 (203)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1e-18 Score=139.99 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=104.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC---CCccccceeeEEE------------------EEEECC------eEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLE---SYISTIGVDFKIR------------------TVEQDG------KTIKL 59 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~------------------~~~~~~------~~~~~ 59 (203)
..++|+++|..++|||||+++|.+..... +.....+...... ....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997532211 1111111111100 000011 13678
Q ss_pred EEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 028792 60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAK 137 (203)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~ 137 (203)
++||+||++.|...+......+|++++|+|+++..........+..+.... ..|+++++||+|+.+.... ..+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 999999999988877777888999999999986431112222222232221 2578999999998753221 123344
Q ss_pred HHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 138 AFADEI---GIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 138 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
++.... +++++++||++|+|+++++++|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 444433 57899999999999999999998755
No 211
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=129.40 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=113.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------hhccccCCc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TSSYYRGAH 82 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d 82 (203)
.|.+||.|++|||||+++|...+......+.++.......+.+++- ..+.+-|+||..+-.++ ....++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4678999999999999999976655444444444444445555543 23889999995433222 233467899
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCC
Q 028792 83 GIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSAT 156 (203)
Q Consensus 83 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
.++||+|++.. ..+..++.+..++..+.. ...|.++|+||+|+.+.+ ...+.+++..+.- .++++||+.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999988 788888888877766644 578999999999985321 1224666666664 49999999999
Q ss_pred CHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 gi~~~~~~l~~~ 168 (203)
|+.+++..|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999887653
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=3e-18 Score=142.90 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD---SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-|.++|..++|||||+++|.+. ..+.+....++.+.....+...+. ..+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 333343344444443333333222 458899999999887777777889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHcC---CCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV--SYETAKAFADEIG---IPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 160 (203)
|+|+++... ....+.+..+... +.| +++|+||+|+.+.... ..+++.++....+ ++++++||++|+|+++
T Consensus 81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999986321 1112222222222 345 5789999998753222 1234445544443 6899999999999999
Q ss_pred HHHHHHHHH
Q 028792 161 AFMAMAASI 169 (203)
Q Consensus 161 ~~~~l~~~~ 169 (203)
+++.|....
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999997654
No 213
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=3.2e-18 Score=141.99 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
..-+|+++|+.++|||||+++|+. +.+.... ..+.+.++......+....+.+++||+||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 3332211 12334444444444444558999999999999999
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcC
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIG 144 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~ 144 (203)
.+..++..+|++++|+|+.+.... ....++..+.. .+.|.++++||+|....+.. ..+++..+.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999874322 22233332222 36899999999998643221 1233333332 234
Q ss_pred CCEEEEecCCCC----------CHHHHHHHHHHHH
Q 028792 145 IPFMETSAKSAT----------NVEQAFMAMAASI 169 (203)
Q Consensus 145 ~~~~~~Sa~~~~----------gi~~~~~~l~~~~ 169 (203)
++++.+||++|. |+..+++.+++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 789999999998 5777877777665
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=3e-18 Score=127.78 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--------C----------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYL--------E----------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+|+|||||+++|+..... . ......+.......+.+++ .++++||+||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 5899999999999999999853211 0 0011112222333344444 789999999999888
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
..+...+..+|++++|+|+++.... ....++..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 8888899999999999999875432 23444444433 3689999999999864
No 215
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=4.9e-18 Score=123.04 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
.++|+++|..++|||||+++|+.... ..+..+..+... ....+......+.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence 47899999999999999999985310 001122233333 233333344678999999998887
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc----
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEI---- 143 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~---- 143 (203)
......+..+|++++|+|+...-. ......+..+.. .+.| +++++||+|+...... ..+++..+....
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777777889999999999976422 112223333332 2466 7789999998643221 122344554443
Q ss_pred -CCCEEEEecCCCCCHH
Q 028792 144 -GIPFMETSAKSATNVE 159 (203)
Q Consensus 144 -~~~~~~~Sa~~~~gi~ 159 (203)
+++++++||++|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 3789999999999864
No 216
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=2.8e-18 Score=142.43 Aligned_cols=155 Identities=16% Similarity=0.245 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCCC--------------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD--SYLES--------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
+|+|+|+.++|||||+++|+.. .+... ....++.......+.+++ +++++|||||+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 7999999999999999999852 22111 111223223333444544 88999999999999888
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCC
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI 145 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~ 145 (203)
+...+..+|++++|+|+.+.. ......++..+.. .+.|+++++||+|+...+.. -.+++..++. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 899999999999999998632 2333445544443 36899999999998653211 1233333332 2346
Q ss_pred CEEEEecCCCC----------CHHHHHHHHHHHHH
Q 028792 146 PFMETSAKSAT----------NVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~----------gi~~~~~~l~~~~~ 170 (203)
+++++||++|. |+..+|+.+.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999988887663
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=1.4e-18 Score=128.55 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--C-----------------------------CCCccccceeeEEEEEEECCeEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY--L-----------------------------ESYISTIGVDFKIRTVEQDGKTIK 58 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
+|+++|+.++|||||+.+|+...- . .+....++.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999963210 0 01112233344444455554 78
Q ss_pred EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc
Q 028792 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLNEIDRYASENVNKLLVGNKCDLTAN--KV 130 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~ 130 (203)
+.+||+||+..+...+...+..+|++++|+|+++... +. .....+...... ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence 9999999988777666667788999999999987421 11 112222222211 13688999999998732 11
Q ss_pred cCH----HHHHHHHHHcC-----CCEEEEecCCCCCHH
Q 028792 131 VSY----ETAKAFADEIG-----IPFMETSAKSATNVE 159 (203)
Q Consensus 131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 159 (203)
... +++..+....+ ++++++||++|+|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111 22223344433 679999999999987
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=4.5e-18 Score=126.55 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=106.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh------------c
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------R 71 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~ 71 (203)
+..+.++|+++|.||+|||||.|.+++.+..+......++.....- .+..+..++.++||||.-.- .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg-i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG-IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeE-EEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4567899999999999999999999999887765444332222222 23334478999999993211 1
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH------------HHHH
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET------------AKAF 139 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~------------~~~~ 139 (203)
+.....+..+|.+++|+|+++.-... -...+..+..+. ..|-++|+||.|........... ..++
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 12334568899999999999633211 122444455554 47889999999976442110000 1111
Q ss_pred HHHc-------------CC----CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 140 ADEI-------------GI----PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 140 ~~~~-------------~~----~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.++. ++ .+|.+||+.|+|++++.++|...+.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1111 12 3899999999999999999887553
No 219
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=125.08 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=119.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh-----hhhchh----
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----ERFRTI---- 73 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----~~~~~~---- 73 (203)
.-++....|+|.|.||||||||++.+...+......|.++.......+..+. .+++++||||. ++.+..
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHH
Confidence 3455678999999999999999999998887777777777777777777766 78899999992 111111
Q ss_pred hhccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEE
Q 028792 74 TSSYYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMET 150 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (203)
...+-.-.++++|+||.+... +.+.-..++..+..... .|+++|+||+|..+.+.+ +++.......+. ....+
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~ 316 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKI 316 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccce
Confidence 122224478999999998654 56666667777876654 799999999998754333 334444444444 47888
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
++..+.+++.+-..+.....+
T Consensus 317 ~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 317 SATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeeehhhHHHHHHHHHHHhhc
Confidence 999999999888888776544
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=117.18 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=106.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (203)
+.+...-|+++|.+|||||||||+|+++....-...|++.+.....+.+++. +.+.|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3456688999999999999999999997743333345555566666666663 78999999 2334444
Q ss_pred hhcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCC-
Q 028792 74 TSSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIP- 146 (203)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~- 146 (203)
...+++ +-.++++++|+..+-.-.+. +++......+.|+++++||+|.....+... ..+.+ +.......
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~----em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR----EMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH----HHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 444443 35688999998764432211 222222334799999999999876544321 22221 11111222
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 147 -FMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 147 -~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
++.+|+..+.|++++...|.+.+..
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999999887653
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.2e-18 Score=137.19 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=115.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhcc-c-c
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSY-Y-R 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~-~ 79 (203)
..+|+++|.||+|||||+|+|.+.+..-...|.++.+.....+...+ .++++.|+||.-.... ..+.+ + .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 46799999999999999999998777666667788777777777777 4588999999432211 12223 3 4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
..|++|-|+|+++-+.-..+.- ++. +-+.|++++.|++|..+.+.+. -+..++.+.+++|+++++|++|+|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl---QLl---E~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL---QLL---ELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH---HHH---HcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5799999999998764222111 122 2378999999999987654443 34667788899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKN 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++...+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999998875543
No 222
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=126.27 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=117.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc----hh---hhccccCCc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TI---TSSYYRGAH 82 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~d 82 (203)
-|.++|.|++|||||+++++.-+......+.++.......+... ..-.|.+-|+||..+-. .+ ....+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 46789999999999999999776655555665555666666552 23468899999954321 12 233457789
Q ss_pred EEEEEEeCCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEE-EecCCCC
Q 028792 83 GIIVVYDVTDQE---SFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TSAKSAT 156 (203)
Q Consensus 83 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~ 156 (203)
++++|+|++..+ ..++......++..+.. .++|.+||+||+|+....+...+....+.+..+...+. +||.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998544 46667777777777644 57899999999997655444344444455555544322 9999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028792 157 NVEQAFMAMAASIKNRM 173 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~ 173 (203)
|++++...+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999888775
No 223
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=2.4e-18 Score=137.48 Aligned_cols=168 Identities=24% Similarity=0.330 Sum_probs=127.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+++|..|+||||||..|+..++++...+-...-.....+..+. +...|.|++....-.......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEE
Confidence 34569999999999999999999999998876554332222222222333 4478999987665555567788999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-C-CEEEEecCCCCCH
Q 028792 85 IVVYDVTDQESFNNVKQ-WLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYET-AKAFADEIG-I-PFMETSAKSATNV 158 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi 158 (203)
+++|+++++++++.+.. |+..++.... .+.|+|+|+||.|.......+.+. ...+...+. + ..++|||++..++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 99999999999999876 8888877653 479999999999998766654443 445555544 3 4899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 028792 159 EQAFMAMAASIKNRMA 174 (203)
Q Consensus 159 ~~~~~~l~~~~~~~~~ 174 (203)
.++|....+.+.....
T Consensus 164 ~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 164 SELFYYAQKAVIHPTS 179 (625)
T ss_pred HhhhhhhhheeeccCc
Confidence 9999998887765443
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=5.6e-17 Score=119.94 Aligned_cols=152 Identities=19% Similarity=0.215 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCc----------------ccc-------ceeeE---------------EEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYI----------------STI-------GVDFK---------------IRTVE 51 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~-------~~~~~---------------~~~~~ 51 (203)
+|+++|+.++|||||+.+|..+.+..... .+. +.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998655432111 000 00000 01111
Q ss_pred ECCeEEEEEEEeCCChhhhchhhhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 52 QDGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
.. ...+.++|+||+..+.......+. .+|++++|+|+..... .....++..+. ..+.|+++++||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~---~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL---ALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH---HcCCCEEEEEECccccCHH
Confidence 22 256889999999887655444443 6899999999876433 11222333232 2368999999999986532
Q ss_pred ccC--HHHHHHHHH--------------------------HcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 130 VVS--YETAKAFAD--------------------------EIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 130 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
... .+++.++.. ...+++|.+|+.+|+|++++...|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 221 122222222 11248999999999999999887753
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.9e-17 Score=122.04 Aligned_cols=158 Identities=19% Similarity=0.311 Sum_probs=99.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC---ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----hhhccccCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESY---ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----ITSSYYRGA 81 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 81 (203)
||+++|+.+|||||+.+.++.+..+... .+|.. .....+.. ...+.+.+||+||+..+.. .....+.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999986544332 23332 22233321 2337899999999875433 346678999
Q ss_pred cEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcC---CCEEE
Q 028792 82 HGIIVVYDVTDQES---FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV------SYETAKAFADEIG---IPFME 149 (203)
Q Consensus 82 d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~ 149 (203)
+++|||+|+.+.+- +..+...+..+....+ +..+.++++|+|+..+... ..+.+.+.....+ +.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 99999999985443 3333444444445444 7889999999998653211 1122333444445 77999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
||..+ +.+-++|..+++.+.-+
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTT
T ss_pred ccCcC-cHHHHHHHHHHHHHccc
Confidence 99998 69999999998877643
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=2e-17 Score=121.94 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------CccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLES-------------------YISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
+|+++|+.++|||||+++|+....... .....+.......+.+ ++..+.+++||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 0011111111122222 345688999999999
Q ss_pred hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
..+.......+..+|++++|+|+.+..+... ..++..+. ..+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence 9888878888899999999999987665432 23333332 2358999999999975
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.4e-17 Score=130.17 Aligned_cols=145 Identities=19% Similarity=0.150 Sum_probs=93.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
...++|+++|..++|||||+++|++... ..+..+..+.+. ....+......+.++|+||+..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 3568999999999999999999985211 011122233333 3333433446788999999988
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC-
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG- 144 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~- 144 (203)
|.......+..+|++++|+|+.+...-. ....+..+... +.| +++++||+|+.+..... .+++..+....+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8776666678899999999998632211 12233333322 567 67889999986433221 224445544443
Q ss_pred ----CCEEEEecCCCC
Q 028792 145 ----IPFMETSAKSAT 156 (203)
Q Consensus 145 ----~~~~~~Sa~~~~ 156 (203)
++++++||++|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 164 PGDDIPVIRGSALKAL 179 (394)
T ss_pred CcCCccEEEeeccccc
Confidence 589999999983
No 228
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=8.9e-17 Score=124.45 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=116.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--hh------hhcc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--TI------TSSY 77 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~------~~~~ 77 (203)
.....|.++|..|+|||||+|+|.+........-..+.+.....+.+.+ ...+.+-||-|.-+.- .+ ....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4568999999999999999999997665444334445556666666654 2457788999943321 11 1223
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
...+|++++|+|+++|.....+......+....-.+.|+|+|.||+|+..... .......... ..+.+||++|+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence 57899999999999998777777777777776556799999999999765433 1111111112 699999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028792 158 VEQAFMAMAASIKNRM 173 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~ 173 (203)
++.++..|...+....
T Consensus 344 l~~L~~~i~~~l~~~~ 359 (411)
T COG2262 344 LDLLRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999999887543
No 229
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=8.3e-18 Score=114.24 Aligned_cols=155 Identities=22% Similarity=0.299 Sum_probs=120.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.-|++++|-.|+|||||++.|..++..... ||.. ..+..+.+.+ .+++.+|.+|+..-+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccC-CCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4468999999999999999999988765543 4443 4455666777 889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH------HHHHc--------C---CCEE
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKA------FADEI--------G---IPFM 148 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~------~~~~~--------~---~~~~ 148 (203)
.+|+-|.+.+.+.+..++.+.... ....|+++.+||+|..... +.++... +.... + +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999998888776654443 2579999999999987543 3333322 11111 1 3478
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028792 149 ETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~ 168 (203)
.||...+.|..+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 89999999999999988654
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=6.9e-17 Score=129.15 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=98.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD------S----------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|..++|||||+++|++. . ...+..+..+.+. ..+.++.....+.+||+||+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 345799999999999999999999732 0 0111123333333 333344444678999999998
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVS---YETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~~ 144 (203)
.|..........+|++++|+|+.+..... ....+..+... +.|.+ +++||+|+.+..... .+++..+....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 88766666667899999999998632211 12222223222 56655 689999987543221 234556666554
Q ss_pred -----CCEEEEecCCCC-CHHHHHH
Q 028792 145 -----IPFMETSAKSAT-NVEQAFM 163 (203)
Q Consensus 145 -----~~~~~~Sa~~~~-gi~~~~~ 163 (203)
++++++||.+|. |..++..
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~~ 187 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWEA 187 (394)
T ss_pred CCccCccEEECccccccccCCchhH
Confidence 789999999875 4444443
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=6.6e-17 Score=129.22 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=94.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcC-------CC---------CCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD-------SY---------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+....++|+++|.+++|||||+++|++. .+ ..+.....+.+.. ...+......+.++|+||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEEcCCCcEEEEEECCCH
Confidence 4456799999999999999999999852 10 0111222333332 2333333467899999999
Q ss_pred hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHc
Q 028792 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVV---SYETAKAFADEI 143 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~ 143 (203)
..|.......+..+|++++|+|+.+.... .....+..+. ..+.|.+ +++||+|+.+.... ..+++..+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 88776666777899999999999864321 1223333232 2357765 57999998643221 112445555554
Q ss_pred C-----CCEEEEecCCCCC
Q 028792 144 G-----IPFMETSAKSATN 157 (203)
Q Consensus 144 ~-----~~~~~~Sa~~~~g 157 (203)
+ ++++++||.+|.+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCCcCceeEEecchhcccc
Confidence 3 6799999999853
No 232
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2.8e-16 Score=118.09 Aligned_cols=156 Identities=22% Similarity=0.166 Sum_probs=114.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhhhcccc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYR 79 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 79 (203)
-..+++++|+|++|||||+++|.+........+.++.+..+..+.+++ .++++.|+||.-.- ........+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 347899999999999999999998877666667777788888898988 88999999984321 223455679
Q ss_pred CCcEEEEEEeCCChhh-HHHHHHHHH------------------------------------------------------
Q 028792 80 GAHGIIVVYDVTDQES-FNNVKQWLN------------------------------------------------------ 104 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~------------------------------------------------------ 104 (203)
+||++++|+|+....+ .+-+...+.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985443 433333222
Q ss_pred --------HHHh-h--cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 105 --------EIDR-Y--ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 105 --------~l~~-~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
.+.. . .-..+|.+.|+||.|+.. .++...+.+.. .++.+||..+.|++++.+.|.+.+.-
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 0000 0 112467899999999864 34444444443 89999999999999999999887653
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=1.2e-16 Score=121.28 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY------------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+++|||||+++|+...- +.+.....+.+.....+.+++ .+++++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999973111 111223334444445555655 788999999998888
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
..+...+..+|++++|+|+.+...-. ....+..+. ..+.|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~---~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD---RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH---HcCCCEEEEEECCCCCC
Confidence 88888999999999999998643211 122222232 23689999999999864
No 234
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.1e-16 Score=128.45 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=96.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|.+++|||||+++|++... ..+..+..+.+..... +.....++.++|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChH
Confidence 34569999999999999999999986311 1111223333332223 33334678899999988
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~ 144 (203)
.+.......+..+|++++|+|+..... ......+..+.. .+.| +|+++||+|+.+..... .+++..+....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 876666677789999999999986432 112223322322 2577 67889999987533221 124445554443
Q ss_pred -----CCEEEEecCCCCCH
Q 028792 145 -----IPFMETSAKSATNV 158 (203)
Q Consensus 145 -----~~~~~~Sa~~~~gi 158 (203)
++++++||.+|+++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 68999999998754
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.3e-16 Score=120.11 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=95.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-----
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----- 71 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 71 (203)
..++|+++|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 568999999999999999999998776543 23344445555566667777899999999932210
Q ss_pred ---------------------hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 72 ---------------------TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 72 ---------------------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
..+...+ ..+|+++|+++.+... +... .++.+..... ..|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~--D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPL--DIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHH--HHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 0011222 2578888888876421 1111 0222333332 5899999999998653
Q ss_pred cc--cCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 129 KV--VSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.+ .....+.+.+..++++++.......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 32 2345567778888999998776443
No 236
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=3.7e-16 Score=113.78 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccc---eeeEEEEEEECCeEEEEEEEeCCChhhhch-----hhhccccC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIG---VDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----ITSSYYRG 80 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 80 (203)
++|+++|.+|+|||||+|+|.+.........+.+ .+.....+.... ...+.+||+||...... +....+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 7899999999999999999998654332211111 011111111111 23688999999643211 11223677
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHH----HHHHcC
Q 028792 81 AHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTANKV-----------VSYETAKA----FADEIG 144 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~----~~~~~~ 144 (203)
+|+++++.+. ++... ..++..+... +.|+++|+||+|+..... ...+++.+ .....+
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 22222 2344445443 579999999999853211 11111222 222222
Q ss_pred ---CCEEEEecC--CCCCHHHHHHHHHHHHHHHhc
Q 028792 145 ---IPFMETSAK--SATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 145 ---~~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~~ 174 (203)
-++|.+|+. .+.++..+.+.|+..+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 369999999 579999999999998886543
No 237
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=7.9e-17 Score=118.70 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCccccceeeEEEEEEEC--------CeEEEEEEEeCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY--LE--------------SYISTIGVDFKIRTVEQD--------GKTIKLQIWDTA 65 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 65 (203)
+|+++|..++|||||+.+|+...- .. +.....+.......+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 10 011112222222222232 346889999999
Q ss_pred ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
|+..|.......+..+|++++|+|+.+...... ... +......+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~---l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETV---LRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHH---HHHHHHcCCCEEEEEECCCcc
Confidence 999999888899999999999999987654332 222 222222367999999999975
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=4.1e-16 Score=118.20 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCC----------------------CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLES----------------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
-+|+++|++|+|||||+++|+...-... .....+.......+.+. ..++++|||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--~~~i~liDTPG 80 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--DCVINLLDTPG 80 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--CEEEEEEECCC
Confidence 3699999999999999999974211000 00111222223344444 48899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
+.++.......+..+|++++|+|+++.... ....++.... ..+.|+++++||+|+...
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 988877677778999999999999875321 1223333222 236899999999997654
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=2.2e-16 Score=126.59 Aligned_cols=148 Identities=23% Similarity=0.262 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------------------------CCccccceeeEEEEEEECCe
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSY--LE-------------------------------SYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (203)
++|+++|+.++|||||+.+|+...- .. +.....+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 5899999999999999999973221 10 0111223333333444444
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY-- 133 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~-- 133 (203)
.++.++|+||+..|.......+..+|++++|+|+.....-. ....+..+.... ..++++++||+|+.+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 67899999999888766666788999999999997543211 111122222221 246888999999865322111
Q ss_pred --HHHHHHHHHcC---CCEEEEecCCCCCHHHH
Q 028792 134 --ETAKAFADEIG---IPFMETSAKSATNVEQA 161 (203)
Q Consensus 134 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~ 161 (203)
++...+....+ ++++++||++|+|+++.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22233334433 57999999999999863
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=9.2e-16 Score=122.60 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=94.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|..++|||||+++|++... ..+..+..+.+.. ...+......+.++|+||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHH
Confidence 34679999999999999999999986211 0111223333333 33333334678899999998
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHc-
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVS---YETAKAFADEI- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~- 143 (203)
.|.......+..+|++++|+|+.+... ......+..+.. .+.|.+ +++||+|+.+..... ..++..+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 877666677889999999999986432 112233333332 257876 579999986432211 12344444433
Q ss_pred ----CCCEEEEecCCCCC
Q 028792 144 ----GIPFMETSAKSATN 157 (203)
Q Consensus 144 ----~~~~~~~Sa~~~~g 157 (203)
+++++++||+++.+
T Consensus 163 ~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 163 FPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCccCCcEEEeecccccC
Confidence 36899999998753
No 241
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=117.57 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=109.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE-EEECCeEEEEEEEeCCChhh-------hchhhhccc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT-VEQDGKTIKLQIWDTAGQER-------FRTITSSYY 78 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~ 78 (203)
..++|+++|.+|+|||||||+|+.+...+...-..+.+..... ..+++ -.+++||+||-.. +.......+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 5689999999999999999999976655443222222222222 22333 4589999999443 677788889
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------ccCHHHHH-----------HHH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-------VVSYETAK-----------AFA 140 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~-----------~~~ 140 (203)
...|++++++++.|++--.+...+.+.+.... +.++++++|.+|...+- ......++ +++
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874333344444443322 37999999999986541 11111122 122
Q ss_pred HHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 141 DEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 141 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
+. --|++..+...++|++++...++..+....
T Consensus 194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 194 QE-VKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred hh-cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 22 247888889999999999999999876433
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=6.6e-16 Score=103.03 Aligned_cols=106 Identities=25% Similarity=0.223 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh---------chhhhcccc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYYR 79 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 79 (203)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+..++ ..+.++|+||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985432 22223333344445556677 45579999995321 111223348
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 122 (203)
.+|++++|+|++++.. +.....++.+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 8999999999877422 2233343444 2 46899999998
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=1e-15 Score=124.30 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=96.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC------C----------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------Y----------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|.+++|||||+++|+... . ..+.....+.+.....+..++ ..+.++|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence 3456899999999999999999998521 1 112222233333333333333 678999999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHc-
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVS---YETAKAFADEI- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~- 143 (203)
.|.......+..+|++++|+|+.+.... ...+++..+... ++| +++++||+|+.+..... .+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 8877777777899999999999864321 223333333322 567 67889999987532221 12344554443
Q ss_pred ----CCCEEEEecCCCCC
Q 028792 144 ----GIPFMETSAKSATN 157 (203)
Q Consensus 144 ----~~~~~~~Sa~~~~g 157 (203)
+++++++|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999998854
No 244
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.3e-15 Score=119.27 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=119.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..=|++||.-.-|||||+..+-.........-.++.+.....+..+. ..-.+.++||||++.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3556799999999999999999988777666556666677777776642 124688999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-------HcC--CCEEEEecCCC
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-------EIG--IPFMETSAKSA 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~ 155 (203)
|+|+|++|.-- .+..+.+......+.|+++.+||+|..+.+ .+....-.. .++ ..++++||++|
T Consensus 83 ILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 83 ILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 99999997322 233333444455589999999999987432 222222222 222 56999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAASIKNR 172 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~ 172 (203)
+|+++++..+.-....+
T Consensus 156 ~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 156 EGIDELLELILLLAEVL 172 (509)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999987755544
No 245
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.8e-15 Score=124.33 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=79.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------CCccccceeeEEEEEEECCeEEEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIW 62 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 62 (203)
.++.-+|+|+|++++|||||+++|+. +.... ......+.......+.+++ +.+++|
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inli 84 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLL 84 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEE
Confidence 34567999999999999999999973 11100 0001112222223344444 789999
Q ss_pred eCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
||||+..+.......+..+|++|+|+|+++.... ....++.... ..+.|+++++||+|+..
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence 9999988887777788999999999999874321 2233333322 24789999999999754
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.6e-15 Score=115.45 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+|+|||||+++|+........ ....+.......+.+++ ..+++||+||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999743211000 01112222333444554 678999999998887
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE-
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET- 150 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (203)
..+...+..+|++++|+|+++.........| ..+. ..+.|.++++||+|..... ..+...++....+.+++++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 7788889999999999999876543322222 2222 2368999999999987542 1233344444455554443
Q ss_pred -ecCCCCCHHHHHHHH
Q 028792 151 -SAKSATNVEQAFMAM 165 (203)
Q Consensus 151 -Sa~~~~gi~~~~~~l 165 (203)
+..++.++..+.+.+
T Consensus 153 ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 153 LPIGEGDDFKGVVDLL 168 (268)
T ss_pred ecccCCCceeEEEEcc
Confidence 455555554444333
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.4e-15 Score=122.77 Aligned_cols=157 Identities=16% Similarity=0.099 Sum_probs=95.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD------S----------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
...++|+++|..++|||||+++|.+. . .+.+..+..+.+..... +.....++.++|+||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccc
Confidence 35689999999999999999999621 1 01122233344433333 333446789999999987
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHc--
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVSY---ETAKAFADEI-- 143 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~---~~~~~~~~~~-- 143 (203)
|.......+..+|++++|+|+.+... ....+.+..+. ..+.| +++++||+|+.+...... +++.++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~---~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR---QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76655556677999999999976432 11222222232 23578 467899999875322111 1233333322
Q ss_pred ---CCCEEEEecC---CCCC-------HHHHHHHHHHH
Q 028792 144 ---GIPFMETSAK---SATN-------VEQAFMAMAAS 168 (203)
Q Consensus 144 ---~~~~~~~Sa~---~~~g-------i~~~~~~l~~~ 168 (203)
.++++++|+. +|.| +.++++.|.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3678888876 4544 44555555443
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=9.5e-16 Score=123.87 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=98.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (203)
..++|+++|+.++|||||+.+|+...- ..+.....+.+.....+.. .
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~--~ 83 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET--T 83 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC--C
Confidence 458999999999999999999873110 0111222333333333333 4
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCCC
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN-------NVKQWLNEIDRYASENV-NKLLVGNKCDLTA 127 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~ 127 (203)
...++++|+||+..|.......+..+|++|+|+|+.+. .|+ ..+..+..+.. .+. ++++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 47889999999999988888889999999999999863 121 22232222222 245 4688899999752
Q ss_pred Cc--c----cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHH
Q 028792 128 NK--V----VSYETAKAFADEIG-----IPFMETSAKSATNVEQ 160 (203)
Q Consensus 128 ~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 160 (203)
.. . ...+++..+++..+ ++++++||++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 11345666666655 6799999999999864
No 249
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=6e-16 Score=125.96 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=96.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------------------------CCccccceeeEEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE-------------------------------SYISTIGVDFKIRTVE 51 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~ 51 (203)
....++|+++|..++|||||+.+|+...- .. +....++.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35669999999999999999999974321 10 0011122333333333
Q ss_pred ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.++ ..+.++|+||+..|.......+..+|++++|+|+.+.-.-. .......+.... ..|+++++||+|+.+....
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIATLLG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHHHHhC--CCceEEEEEeeccccchhH
Confidence 333 67899999998887665555579999999999997542110 111111122221 2478899999998743221
Q ss_pred CHHH----HHHHHHHc----CCCEEEEecCCCCCHHHHH
Q 028792 132 SYET----AKAFADEI----GIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 132 ~~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~~ 162 (203)
..++ +..+.... .++++++||++|+|+++.-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 1222 22333333 3789999999999998753
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.2e-15 Score=117.85 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=54.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEE---------------------ECC-eEEEEEEEeCCCh-
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE---------------------QDG-KTIKLQIWDTAGQ- 67 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~- 67 (203)
|+++|.|++|||||+++|.+........|..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765432223322222221111 122 3367999999996
Q ss_pred ---hhhchhhhc---cccCCcEEEEEEeCC
Q 028792 68 ---ERFRTITSS---YYRGAHGIIVVYDVT 91 (203)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 91 (203)
.+..++... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334444334 489999999999997
No 251
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=6.8e-16 Score=124.76 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=96.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CCCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYL-----------------------------ESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|+.++|||||+.+|+.. ... .+.....+.+.....+..+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~- 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence 35689999999999999999999741 110 1112223333333334444
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SF---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTA 127 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~ 127 (203)
...++++|+||+.+|.......+..+|++++|+|+.+.. .+ ......+..+.. .+.| +|+++||+|...
T Consensus 84 -~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 -KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred -CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 478899999999998887878889999999999998642 01 122222222322 2555 678999999532
Q ss_pred --CcccC----HHHHHHHHHHc-----CCCEEEEecCCCCCHHH
Q 028792 128 --NKVVS----YETAKAFADEI-----GIPFMETSAKSATNVEQ 160 (203)
Q Consensus 128 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 160 (203)
..+.. .+++.++.... +++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 22334444433 36799999999999864
No 252
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=2.1e-14 Score=104.51 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC--ccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-----------hhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS 75 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 75 (203)
++|+++|.+|+|||||+|+|++....... .+..+..........++ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654322 12233333344444555 5789999999543211 112
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCCE
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVV------SYETAKAFADEIGIPF 147 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 147 (203)
......|+++||+++.+ .+-. -...++.+..... .-.++++++|+.|......+ ....+..+.+..+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999876 2211 1222333333211 12578899999997654311 1134455556656666
Q ss_pred EEEec-----CCCCCHHHHHHHHHHHHHH
Q 028792 148 METSA-----KSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 148 ~~~Sa-----~~~~gi~~~~~~l~~~~~~ 171 (203)
+..+. ..+.++.++++.+-+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 65553 4577888888888887765
No 253
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=2.3e-15 Score=128.25 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=83.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCC--------CC----------CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL--------ES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.+...+|+|+|..++|||||+++|+...-. .. .....+.......+.+++ ..+++|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence 345689999999999999999999842110 00 011122223333444554 7899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
+..+...+...+..+|++++|+|+++.........| ..+. ..+.|+++++||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence 998888888899999999999999886654433333 2222 23689999999999864
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1e-15 Score=120.66 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=109.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchh--------hhcc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI--------TSSY 77 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~~ 77 (203)
-++|+|+|+||+|||||+|.|.+....- ...+.++.+.....+.++| +.+.+.||.|..+ -... ...-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4899999999999999999999877653 3446666666667777888 7788999999654 1111 1234
Q ss_pred ccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhh------cCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHcC---C
Q 028792 78 YRGAHGIIVVYDVT--DQESFNNVKQWLNEIDRY------ASENVNKLLVGNKCDLTAN-KVVSYETAKAFADEIG---I 145 (203)
Q Consensus 78 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~------~~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~---~ 145 (203)
+..+|++++|+|+. +-++-..+...++..... .....|++++.||.|+... .++...- ..+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence 68899999999994 333333333333332111 1134789999999999765 2222211 11111111 2
Q ss_pred C-EEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792 146 P-FMETSAKSATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 146 ~-~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 174 (203)
+ +.++|+++++|++.+.+.|.+.+....-
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 5569999999999999999988775443
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.65 E-value=5.4e-16 Score=109.71 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCChhhhchhhhc---cccCCcE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSS---YYRGAHG 83 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~ 83 (203)
.-.|+++|+.|+|||+|+..|..+...+...+. .... .+.. ......+.++|+||+.+.+..... ....+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357999999999999999999988654443322 2111 1111 222346789999999988764443 3788999
Q ss_pred EEEEEeCCC-hhhHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCC
Q 028792 84 IIVVYDVTD-QESFNNVKQ-WLNEIDRY--ASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 84 ~i~v~d~~~-~~s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~~~ 128 (203)
+|||+|.+. +..+.++.+ ++..+... .....|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999974 444555555 44444322 2357899999999998753
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.65 E-value=3.4e-15 Score=125.94 Aligned_cols=151 Identities=23% Similarity=0.229 Sum_probs=94.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-------------C--------------------ccccceeeEEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLES-------------Y--------------------ISTIGVDFKIRTVE 51 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-------------~--------------------~~~~~~~~~~~~~~ 51 (203)
....++|+++|.+++|||||+++|+.....-. . ....+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999985321110 0 01112222223333
Q ss_pred ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.++ .++.++|+||+..+.......+..+|++++|+|+.+...- ........+.... ..++++++||+|+.+....
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLG--IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence 333 5788999999988766555567899999999999754321 1112222222221 2578889999998642211
Q ss_pred CH----HHHHHHHHHcC---CCEEEEecCCCCCHHH
Q 028792 132 SY----ETAKAFADEIG---IPFMETSAKSATNVEQ 160 (203)
Q Consensus 132 ~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 160 (203)
.. .++.++....+ ++++++||++|+|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 22333334444 4699999999999985
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.1e-15 Score=115.28 Aligned_cols=154 Identities=22% Similarity=0.241 Sum_probs=102.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++++++|+..+|||||+-+|+.+. ...+.....+.+.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 356899999999999999999987421 1122233334444444444444
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~-l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.++|+|+||+..|-.....-..++|+.|||+|+.+.+ .|...-+.++- +.....--..+|+++||+|..+..+
T Consensus 85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 67999999998888777777889999999999998763 22111121111 2222222356788899999988655
Q ss_pred cCHHHHHH----HHHHcC-----CCEEEEecCCCCCHHHH
Q 028792 131 VSYETAKA----FADEIG-----IPFMETSAKSATNVEQA 161 (203)
Q Consensus 131 ~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~gi~~~ 161 (203)
..++++.. +.+..+ ++++++|+..|.|+.+-
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 55554432 333333 67999999999998753
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=1.5e-14 Score=123.07 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC--C------C----------CCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--Y------L----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.++..+|+|+|.+++|||||+++|+... . . .+..+.++.+.....+.+++ ..++++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 4567899999999999999999997421 0 0 01123344445555566665 7889999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
+..+...+...+..+|++++|+|+.+...... ...+..+ ...+.|.++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~---~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA---DKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH---HHcCCCEEEEEECCCCCC
Confidence 98877778888899999999999986533211 2222222 234689999999999864
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=6e-15 Score=119.10 Aligned_cols=161 Identities=13% Similarity=0.172 Sum_probs=101.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccc--eeeEEEE------------E-EECC--------------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIG--VDFKIRT------------V-EQDG-------------- 54 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~--~~~~~~~------------~-~~~~-------------- 54 (203)
-.++|.++|.-..|||||+.+|.+... +.+.....+ ..+.... + ....
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 458899999999999999999986332 222211111 1111110 0 0000
Q ss_pred --eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-
Q 028792 55 --KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV- 131 (203)
Q Consensus 55 --~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~- 131 (203)
....+.++|+||+..|.......+..+|++++|+|+.+........+.+..+.... -.++++++||+|+.+....
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~~ 190 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQAQ 190 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHHH
Confidence 01368899999999887777777789999999999986311111222222222221 2468899999998753221
Q ss_pred -CHHHHHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 132 -SYETAKAFADE---IGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 132 -~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
..+++.++... ...+++++||++|+|++.+++.|.+.+
T Consensus 191 ~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 191 DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 12233333332 357899999999999999998887644
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=1.3e-14 Score=119.24 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=78.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--C----------------CccccceeeEEEEEEECCeEEEEEEEeC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE--S----------------YISTIGVDFKIRTVEQDGKTIKLQIWDT 64 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (203)
..+..+|+|+|.+++|||||+++|+. +.... . .....+.++......++.....+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35667999999999999999999863 11100 0 0001122233333333334488999999
Q ss_pred CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
||+..+.......+..+|++|+|+|+++.-. .....++..... .+.|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9998887766777899999999999986421 122333333322 368999999999985
No 261
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.2e-14 Score=113.52 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=118.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++..-|.|||.-.-|||||+..|-.........-.++..+....+..+.+ -.+++.||||+..|..++..-..-.|++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEE
Confidence 346778999999999999999999877766554455555555555555533 6799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-------HHcC--CCEEEEecCCC
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-------DEIG--IPFMETSAKSA 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~ 155 (203)
++|+.+.|.-. .+..+.|.+....+.|+++.+||+|.++.. .+.+.+.. +.+| ++++++||++|
T Consensus 229 VLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 99999988432 344555666666789999999999987542 23332222 2333 57999999999
Q ss_pred CCHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAAS 168 (203)
Q Consensus 156 ~gi~~~~~~l~~~ 168 (203)
+|++.+-+.+.-.
T Consensus 302 ~nl~~L~eaill~ 314 (683)
T KOG1145|consen 302 ENLDLLEEAILLL 314 (683)
T ss_pred CChHHHHHHHHHH
Confidence 9999998887653
No 262
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.5e-14 Score=102.60 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhcccc---CCcEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAHGII 85 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i 85 (203)
-.|+++|+.+||||+|+.+|..+.....+ +..+.....+..+. -.++++|.||+.+.+.....++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 46999999999999999999987543332 22233334444444 33789999999998877666665 789999
Q ss_pred EEEeCCC--hhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCccc------CHHHH-------------------
Q 028792 86 VVYDVTD--QESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANKVV------SYETA------------------- 136 (203)
Q Consensus 86 ~v~d~~~--~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~~~~------~~~~~------------------- 136 (203)
||+|..- ++--+-...++..+... .....|++|..||.|+...... .+.++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999762 32222233455555444 3457889999999998644210 00000
Q ss_pred ---------H--HHHHH--cCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 137 ---------K--AFADE--IGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 137 ---------~--~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
. +|.+. ..+.+.++|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 11111 2356888999988 899999998764
No 263
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-14 Score=115.61 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=113.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC-------------CCccccceeeEEEEE-EECCeEEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE-------------SYISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~ 68 (203)
.++.-++.|+..-.-|||||..+|+...- +. +....++.......+ ..++..+.++++||||+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 35667899999999999999999973211 11 122233322222222 223666889999999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCE
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPF 147 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 147 (203)
.|......-+..+|++++|+|++..---.....++..+ +.+..+|.|+||+|+...+.- -..++.+.+.....++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 99999999999999999999998644322233333222 336788999999999765432 1233444555556789
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 028792 148 METSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+.+||++|.|++++++.+++.+
T Consensus 213 i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhC
Confidence 9999999999999999999876
No 264
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=5.4e-14 Score=111.88 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE---------------------QD-GKTIKLQIWDTAG 66 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g 66 (203)
++|+++|.|++|||||+++|.+........+..+.+.....+. .+ .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998766443233333223322211 11 1236789999999
Q ss_pred hh----hhchhhhcc---ccCCcEEEEEEeCC
Q 028792 67 QE----RFRTITSSY---YRGAHGIIVVYDVT 91 (203)
Q Consensus 67 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 91 (203)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 223333344 78999999999997
No 265
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.59 E-value=3.9e-14 Score=120.62 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=83.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.+..-+|+|+|.+++|||||+++|+...-.. +....++.......+.+++ ..+++|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 3456799999999999999999997321110 0112334444455566665 7899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
+..+.......+..+|++++|+|+.+....... .++..+. ..+.|+++++||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN---RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCCEEEEEECCCCCCC
Confidence 988777788889999999999999875443322 2222222 236899999999998753
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-13 Score=113.00 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=72.0
Q ss_pred EEEEEeCCChhh-----hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792 58 KLQIWDTAGQER-----FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 58 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 132 (203)
.+.++||||... ........+..+|+++||+|+....+..+ ....+.+.... ...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 468999999643 12233446899999999999986433222 22333343321 125999999999986433333
Q ss_pred HHHHHHHHH----HcC---CCEEEEecCCCCCHHHHHHHHHH
Q 028792 133 YETAKAFAD----EIG---IPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 133 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
.+.+..+.. ... ..++++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 445555432 222 36999999999999999999876
No 267
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=114.19 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=119.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----ch----
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RT---- 72 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~---- 72 (203)
+.-++..-.++++|.|++|||||++.+........+.++++.......+.+ ...+++++||||.-.. ..
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHH
Confidence 344666778999999999999999999876665555555554444444433 3377889999994321 00
Q ss_pred hhhccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH--H-HHHHHHcCCCE
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET--A-KAFADEIGIPF 147 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~--~-~~~~~~~~~~~ 147 (203)
....+..--.+|+|+.|++... |+.+-..++..|..... ++|+|+|+||+|......++.+. + ..+...-++++
T Consensus 240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 0122223356899999999755 55555557777765544 68999999999998776665443 2 33333445899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 148 METSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
+.+|..+.+|+.++....++.++.++-.
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHHHHH
Confidence 9999999999999999988888765544
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=3.1e-14 Score=92.60 Aligned_cols=136 Identities=26% Similarity=0.282 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh----hhhchhhhccccCCcEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYRGAHGII 85 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 85 (203)
|++++|..|+|||||.+.|.+..... ..|...+ ++.. -.+|+||. .++.+.......++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 78999999999999999999865322 2232222 2111 15799993 233333444568899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|-+++++++-- -..+.... ..|+|-|++|.|+.+. .+.+..++|...-|. ++|++|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Cccccccc--ccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999987511 11111211 4679999999999863 334566777777786 7999999999999999998
Q ss_pred HHH
Q 028792 165 MAA 167 (203)
Q Consensus 165 l~~ 167 (203)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 864
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=1.8e-13 Score=116.56 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=75.5
Q ss_pred EcCCCCcHHHHHHHHhcCCCC--------C----------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhh
Q 028792 14 IGDSGVGKSCLLLRFADDSYL--------E----------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS 75 (203)
Q Consensus 14 ~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 75 (203)
+|++++|||||+++|+...-. . ...+..+.......+.+++ +.+++||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999632111 0 0112333344445555655 7899999999988777778
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
..+..+|++++|+|+++.........| ..+. ..+.|+++++||+|...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence 888999999999999876554333222 2222 23689999999999864
No 270
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=1.9e-13 Score=116.40 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=91.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE----------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.++..+|+|+|.+++|||||+++|+. +.... +..+..+.+.....+.+.+ ..++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 45678999999999999999999973 11100 0123344444445555655 6889999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI- 145 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~- 145 (203)
+..+.......+..+|++++|+|+...-.... ...+..+. ..+.|.++++||+|+.... ......++....+.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN 158 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 88776667777889999999999876433222 22222232 2368999999999987543 12223333333332
Q ss_pred ---CEEEEecCCC
Q 028792 146 ---PFMETSAKSA 155 (203)
Q Consensus 146 ---~~~~~Sa~~~ 155 (203)
..+++|+..+
T Consensus 159 ~~~~~ipisa~~~ 171 (693)
T PRK00007 159 PVPIQLPIGAEDD 171 (693)
T ss_pred eeeEEecCccCCc
Confidence 3456666554
No 271
>PTZ00258 GTP-binding protein; Provisional
Probab=99.52 E-value=4.2e-13 Score=105.89 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=60.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER- 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 69 (203)
...++|.++|.||+|||||+|+|.+........|.++.+.....+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999999877655444455555555555554432 23589999999432
Q ss_pred ------hchhhhccccCCcEEEEEEeCC
Q 028792 70 ------FRTITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 70 ------~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233467899999999974
No 272
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.52 E-value=8.4e-13 Score=100.63 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------- 73 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------- 73 (203)
++.+...++|+++|.+|+||||++|+|++....... ..+.+..........++ ..+.++||||.......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 445667899999999999999999999987653221 11122222222233444 68899999995532111
Q ss_pred hhccc--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCH
Q 028792 74 TSSYY--RGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSY 133 (203)
Q Consensus 74 ~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~ 133 (203)
...++ ...|+++||..++.. .+... ...+..+..... --.++++++|+.|.......+.
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~ 173 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEY 173 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCH
Confidence 11111 268999999665421 11111 222333322211 1257899999999765443443
No 273
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=2.6e-13 Score=106.90 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=113.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC---------------CCCCCccccceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YLESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
...-+..|+..-.-|||||..+|+... ..-+....++.......+.+ +|..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 345567888999999999999997421 12233344444444444333 457799999999999
Q ss_pred hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--
Q 028792 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-- 145 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 145 (203)
-.|.-...+-+..+.+.++|+|++..-.-..+.+.+..+. .+.-++-|+||+|++..+. ..-..+...-.++
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 9888777788899999999999987544444455444443 3567788999999986532 1222333444454
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 146 -PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 146 -~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
..+.+||++|.|++++++.+++.+-
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998773
No 274
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=7.2e-13 Score=115.33 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=96.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-----------E-----EEEEEeCCChhhhchhhhccccCCcE
Q 028792 20 GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT-----------I-----KLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 20 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+||||+.+|-+......-...++.+.....+..+... . .+.+|||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999877765554555555555554443210 1 27899999999988877777888999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC------------HHH-HHHH--------
Q 028792 84 IIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS------------YET-AKAF-------- 139 (203)
Q Consensus 84 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------------~~~-~~~~-------- 139 (203)
+++|+|+++ ++++..+. .+.. .+.|+++++||+|+....... .+. ..++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 44443332 2222 258999999999986432110 010 0011
Q ss_pred --HHH-------------c--CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 140 --ADE-------------I--GIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 140 --~~~-------------~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
... + .++++++||++|+|+++++.+|.....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1 368999999999999999988875443
No 275
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.51 E-value=8.8e-13 Score=102.53 Aligned_cols=118 Identities=23% Similarity=0.247 Sum_probs=86.6
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCD 124 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D 124 (203)
.+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 37789999999999999999999999999999999874 345555555555443322 5789999999999
Q ss_pred CCCCc----------------ccCHHHHHHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 125 LTANK----------------VVSYETAKAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 125 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
+.... ..+.+.+..+... ..+.+..++|.+..++..+|..+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 64321 2234444444322 1245677899999999999999999887654
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=1.1e-12 Score=98.42 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--h-h------
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--T-I------ 73 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------ 73 (203)
..+..++|+++|.+|+|||||+|+|++....... ....+..........++ ..+.++||||..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4567799999999999999999999987653322 11222233333334455 678999999955331 1 0
Q ss_pred -hhccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028792 74 -TSSYY--RGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANK 129 (203)
Q Consensus 74 -~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~ 129 (203)
...++ ...|+++||..++... ...+ ...++.+...... -.++++|.||+|...+.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 11223 2578888887665321 2221 2233333322211 25789999999986543
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.49 E-value=7.4e-13 Score=100.82 Aligned_cols=150 Identities=23% Similarity=0.253 Sum_probs=104.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CCCccccceeeEEEEEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL---------------------------------ESYISTIGVDFKIRTVEQ 52 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 52 (203)
...++++-+|+-.-||||||-+|+.+... .+....++.++....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 35799999999999999999999864321 112223455555555554
Q ss_pred CCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 132 (203)
+. .+|.+.||||+++|....-.-...+|+.|+++|+.. .+.+-..-...+..... -..+++.+||+|+.+..+..
T Consensus 84 ~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence 44 678999999999999888888889999999999943 21111111112222222 25677888999999876555
Q ss_pred HHHH----HHHHHHcCC---CEEEEecCCCCCHHH
Q 028792 133 YETA----KAFADEIGI---PFMETSAKSATNVEQ 160 (203)
Q Consensus 133 ~~~~----~~~~~~~~~---~~~~~Sa~~~~gi~~ 160 (203)
++.+ ..|+.++++ .++++||..|+|+..
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 5443 456777774 699999999999864
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=2.6e-12 Score=94.54 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc--cccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhh----h
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTIT----S 75 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~----~ 75 (203)
++|+++|.+|+||||++|.+++........ ...+..........++ ..+.++||||.... .... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999877654432 2333444455556777 67889999993221 1111 1
Q ss_pred ccccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNN--VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIP 146 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 146 (203)
......++++||+.+.. -+-.+ +..++..+.... --..++||++..|......+. ...+.++.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 22467899999999873 22111 122222222111 124578888888765543311 12345566667778
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHHh
Q 028792 147 FMETSAK------SATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 147 ~~~~Sa~------~~~gi~~~~~~l~~~~~~~~ 173 (203)
|...+.+ ....+.+++..+-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8887776 34567777777777666544
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.48 E-value=1.7e-13 Score=117.13 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=80.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD---------------SYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.+...+|+++|+.++|||||+++|+.. .+.+. +..|+...........++..+.+++|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 456789999999999999999999742 11110 112222222223333455668999999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
+..+.......+..+|++++|+|+.+.-.......| ..+ ...+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQA---LKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHH---HHcCCCEEEEEEChhccc
Confidence 988877778889999999999999764322111112 112 223578899999999864
No 280
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.47 E-value=2.1e-12 Score=101.27 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=87.7
Q ss_pred EEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc-CCCCcEE
Q 028792 49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYA-SENVNKL 117 (203)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~-~~~~p~i 117 (203)
.+.+++ +.+.+||.+|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... -.+.|++
T Consensus 178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii 255 (342)
T smart00275 178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII 255 (342)
T ss_pred EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence 344444 6689999999999999999999999999999999963 34555555555554432 2578999
Q ss_pred EEEeCCCCCCCc---------------ccCHHHHHHHHHH-----c------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 118 LVGNKCDLTANK---------------VVSYETAKAFADE-----I------GIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 118 iv~nK~D~~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+++||.|+.... ..+.+.+..|... . .+.+..++|.+-.++..+|..+.+.+.+
T Consensus 256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 999999975321 1233344333222 1 1445778899999999999999888876
Q ss_pred Hh
Q 028792 172 RM 173 (203)
Q Consensus 172 ~~ 173 (203)
..
T Consensus 336 ~~ 337 (342)
T smart00275 336 RN 337 (342)
T ss_pred HH
Confidence 54
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.47 E-value=4e-13 Score=97.69 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=62.9
Q ss_pred EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792 58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK 137 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 137 (203)
...++++.|..-...... .-+|.+|.|+|+.+.++... .....+ ...-++++||+|+.+......+...
T Consensus 93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHH
Confidence 455677777321111111 12678999999987555221 111112 1122889999999753233344444
Q ss_pred HHHHH--cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 138 AFADE--IGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 138 ~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+..+. .+++++++||++|+|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44444 347999999999999999999998754
No 282
>PRK13768 GTPase; Provisional
Probab=99.46 E-value=1.1e-12 Score=98.91 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=69.2
Q ss_pred EEEEEeCCChhhh---chhhhccc---cC--CcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 58 KLQIWDTAGQERF---RTITSSYY---RG--AHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 58 ~~~i~D~~g~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
.+.+||+||..+. ...+..++ .. .+++++++|+........... ++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999997653 23332222 22 899999999975443322222 211111111236899999999998765
Q ss_pred cccCH--HHH------------------------HHHHHHcC--CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 129 KVVSY--ETA------------------------KAFADEIG--IPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 129 ~~~~~--~~~------------------------~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.+... ... .+..+..+ .+++++|+++++|+++++++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 32210 000 01122333 5789999999999999999998765
No 283
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=1.7e-12 Score=95.19 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=84.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCccccceeeEEEEEEEC-C------------------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL------------ESYISTIGVDFKIRTVEQD-G------------------ 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~-~------------------ 54 (203)
.....|.|+|++|+|||||+++++..... .......-.......+... +
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34688999999999999999999743110 0000000000000011111 0
Q ss_pred -eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 028792 55 -KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY 133 (203)
Q Consensus 55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~ 133 (203)
....+.++++.|.-. .. ..+....+..+.|+|+.+.+... .... .. ...|.++++||+|+.+......
T Consensus 100 ~~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 100 LDDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred cCCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhH
Confidence 023456777777210 00 11112345556677776544211 1111 11 1357799999999975332223
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCCCHHHHHHHHHHH
Q 028792 134 ETAKAFADEIG--IPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
+...+..+..+ ++++++||++|.|++++++++.+.
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444433 889999999999999999999874
No 284
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.43 E-value=6.1e-12 Score=101.36 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=122.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
....++++.++|+.++|||.|++.++++.+......+....+....+...+....+.+.|.+-. ...-+...- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3456799999999999999999999999888877677766777777776677777888888754 222222122 77999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 162 (203)
++++||.+++.+|..+...++.-... ...|+++|+.|+|+.+..+...-.-.+++.++++ +.+..|.+.... .++|
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf 575 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF 575 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence 99999999999998877765543333 4789999999999987543332223788999997 466777775333 8999
Q ss_pred HHHHHHHHHHh
Q 028792 163 MAMAASIKNRM 173 (203)
Q Consensus 163 ~~l~~~~~~~~ 173 (203)
..|........
T Consensus 576 ~kL~~~A~~Ph 586 (625)
T KOG1707|consen 576 IKLATMAQYPH 586 (625)
T ss_pred HHHHHhhhCCC
Confidence 99988776544
No 285
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=3.4e-12 Score=85.73 Aligned_cols=114 Identities=30% Similarity=0.342 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766654433 3322 112233456778999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
++..+.++++.+ |...+......+.|.++++||.|+.+...+..+... .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999988655 766665554556888999999998543333333333 34556888888874
No 286
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=1.3e-11 Score=96.48 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh---
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF--- 70 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--- 70 (203)
++|.++|.|++|||||+|+|.+........|.++.+.....+.+.+. ...+.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987744433455554455444444332 135899999994321
Q ss_pred -ch---hhhccccCCcEEEEEEeCC
Q 028792 71 -RT---ITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 71 -~~---~~~~~~~~~d~~i~v~d~~ 91 (203)
.. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 2223467899999999984
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.42 E-value=1.5e-12 Score=97.64 Aligned_cols=95 Identities=23% Similarity=0.349 Sum_probs=76.5
Q ss_pred hhhchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792 68 ERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 146 (203)
+++..+.+.++.++|++++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+......+....+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 466777788999999999999999887 88888888876543 4689999999999976544433344444 457889
Q ss_pred EEEEecCCCCCHHHHHHHHH
Q 028792 147 FMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 147 ~~~~Sa~~~~gi~~~~~~l~ 166 (203)
++++||++|+|++++|..+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999999875
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-12 Score=99.60 Aligned_cols=159 Identities=14% Similarity=0.240 Sum_probs=105.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDS--YLE------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
.-+|+|+..-.-|||||+..|+.+. +.. ......+.++-.+...+.-..++++|+||||+..|.+.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999998532 211 11112233344443333333388999999999999999
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCC
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI 145 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~ 145 (203)
....+..+|++++++|+.+..- -..+.. +.+....+.+.|+|+||+|.+..+.. -.+++..++- ++..
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999986321 111222 23333346677889999998765421 1223333333 3457
Q ss_pred CEEEEecCCCC----------CHHHHHHHHHHHHH
Q 028792 146 PFMETSAKSAT----------NVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~----------gi~~~~~~l~~~~~ 170 (203)
|++..|++.|. ++..+|+.|++.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 89999988764 56677777776653
No 289
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.40 E-value=2e-11 Score=92.24 Aligned_cols=166 Identities=15% Similarity=0.303 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhchhhhccccCC----c
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGA----H 82 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----d 82 (203)
-+|+++|..++||||||.+|.+.+ .+.+..+.+|....+..+ +.-.++.+|-+-|+-.+..+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 579999999999999999998765 334455556666555432 2236788999999877777766665443 4
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHHhh----------------------------------------------------
Q 028792 83 GIIVVYDVTDQES-FNNVKQWLNEIDRY---------------------------------------------------- 109 (203)
Q Consensus 83 ~~i~v~d~~~~~s-~~~~~~~~~~l~~~---------------------------------------------------- 109 (203)
++|++.|.++|.. ++.+..|...+...
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 8899999999954 55566676643210
Q ss_pred ---------cCCCCcEEEEEeCCCCCC----CcccCH-------HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 110 ---------ASENVNKLLVGNKCDLTA----NKVVSY-------ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 110 ---------~~~~~p~iiv~nK~D~~~----~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.+.++|+++|++|+|... ..+... ..++.||..+++.++.+|+++..|++-++..|.+.+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 112466899999999742 111111 235678888999999999999999999999999988
Q ss_pred HHHhccCC
Q 028792 170 KNRMASQP 177 (203)
Q Consensus 170 ~~~~~~~~ 177 (203)
....-..+
T Consensus 290 yG~~fttp 297 (473)
T KOG3905|consen 290 YGFPFTTP 297 (473)
T ss_pred cCcccCCc
Confidence 76544444
No 290
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.40 E-value=2.1e-11 Score=98.64 Aligned_cols=166 Identities=16% Similarity=0.296 Sum_probs=117.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC--eEEEEEEEeCCChhhhchhhhccccC----
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRG---- 80 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~---- 80 (203)
..-.|+|+|..++||||||.+|.+.+ .+.++.+.+|....+.-++ ...++++|.+.|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987644 3445667777776665432 23578999999877777777666654
Q ss_pred CcEEEEEEeCCChhhHH-HHHHHHHHHHh-------------------------h------c------------------
Q 028792 81 AHGIIVVYDVTDQESFN-NVKQWLNEIDR-------------------------Y------A------------------ 110 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~-~~~~~~~~l~~-------------------------~------~------------------ 110 (203)
--++|+|+|.+.|..+- .+..|+..++. + .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 24899999999987643 45555542211 0 0
Q ss_pred -------------CCCCcEEEEEeCCCCCCC----ccc-------CHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 111 -------------SENVNKLLVGNKCDLTAN----KVV-------SYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 111 -------------~~~~p~iiv~nK~D~~~~----~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
+.++|++||++|+|.... ... -.+.++.++-.+|+.++.||++...+++-++..|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 013689999999996431 111 11235677888999999999999999999999998
Q ss_pred HHHHHHhcc
Q 028792 167 ASIKNRMAS 175 (203)
Q Consensus 167 ~~~~~~~~~ 175 (203)
+.+....-.
T Consensus 261 h~l~~~~f~ 269 (472)
T PF05783_consen 261 HRLYGFPFK 269 (472)
T ss_pred HHhccCCCC
Confidence 888764433
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=4e-12 Score=108.97 Aligned_cols=118 Identities=23% Similarity=0.227 Sum_probs=77.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCccccceeeEEEEE--EECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LE--------------SYISTIGVDFKIRTV--EQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g 66 (203)
.++.-+|+++|+.++|||||+.+|+...- .. +....++.......+ ..++....++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 35667899999999999999999974221 10 000111222222222 2344457899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
+..+.......+..+|++++|+|+...-.... ...+..... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH---cCCCeEEEEECchhh
Confidence 98888778888899999999999876432211 222222222 246789999999975
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=6.2e-13 Score=99.09 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=58.0
Q ss_pred EEEEEeCCChhhhchhhhccc--------cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESF-NNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
.+.++|||||.++...+.... ...-++++++|..-..+. ..+..++..+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999987655443332 345688999998633221 12222233322222236899999999999762
Q ss_pred cc-------cC------------HHHHHHHHHHc---C-C-CEEEEecCCCCCHHHHHHHHHHHH
Q 028792 129 KV-------VS------------YETAKAFADEI---G-I-PFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 129 ~~-------~~------------~~~~~~~~~~~---~-~-~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.. .. .....+++... + . .++++|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 00 00111122221 2 3 799999999999999999887654
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=2.1e-12 Score=111.84 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=78.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC--C--------------CCCccccceeeEEEEEEEC--------CeEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--L--------------ESYISTIGVDFKIRTVEQD--------GKTIKLQ 60 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 60 (203)
.+..-+|+|+|+.++|||||+++|+...- . .+....++.......+.++ +....++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 35567999999999999999999985221 0 0011112222222223332 2246799
Q ss_pred EEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
++||||+..+.......+..+|++|+|+|+.+.-.... ...+..+ ...+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~---~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQA---LQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHH---HHcCCCEEEEEEChhhh
Confidence 99999999888878888899999999999987433221 2222222 22368999999999986
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=2.4e-12 Score=111.70 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC----------------CCCccccceeeEEEEEEE--------------C
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL----------------ESYISTIGVDFKIRTVEQ--------------D 53 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~ 53 (203)
+.+..-+|+|+|+.++|||||+.+|+...-. .+.....+.......+.+ +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456789999999999999999999843210 011111222222222222 1
Q ss_pred CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
+..+.++++||||+..|.......+..+|++|+|+|+.+.-.......| ......+.|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~----~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH----HHHHHCCCCEEEEEECCccc
Confidence 2357889999999999988888888999999999999865332222222 22223468999999999986
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=1e-11 Score=92.11 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=81.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
....|+++|.+|+|||||++.|.............+ .+ .+ ......++.++|+||.- .. .......+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 346789999999999999999986422111111111 01 11 11234678899999853 22 2234578999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--cCCCEEEEecCCCCCH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTANKVVS---YETAKA-FADE--IGIPFMETSAKSATNV 158 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~gi 158 (203)
|+|++....... ...+..+.. .+.|. ++|+||+|+.+..... .+++.. +... .+.+++.+||+++-.+
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 999975433211 222222322 24674 4599999986432211 122222 2221 2468999999987433
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.38 E-value=1.1e-11 Score=96.28 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=66.1
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYE 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~ 134 (203)
+.+.++||+|...... .....+|.++++.+....+.+..+. ..+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 5788999999653222 2467799999998744444332222 11211 223899999998754321 112
Q ss_pred HHHHHHHH-------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 135 TAKAFADE-------IGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 135 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
++...... +..+++.+||.++.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222222 2358999999999999999999998765
No 297
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.38 E-value=4.5e-12 Score=89.44 Aligned_cols=78 Identities=24% Similarity=0.218 Sum_probs=57.4
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCCCCCHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKSATNVE 159 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 159 (203)
.-|+|+|++..+.. .++..+ -...-++|+||.|+.+....+.+...+-+++.+ .+++++|+++|+|++
T Consensus 120 ~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 120 LRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred eEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 78888888765421 111000 011338899999999887787788887777765 799999999999999
Q ss_pred HHHHHHHHHH
Q 028792 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
+++.|+....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 298
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.9e-12 Score=100.42 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=100.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (203)
-.+.++++|.-.+|||||+-+|+..- -..+....++.+..... ++-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~--fes~ 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW--FESK 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE--EecC
Confidence 45889999999999999999986411 01122233333333333 3444
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHH---HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNN---VKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
...++|+|+||+..|-.....-..++|+.++|+|++-.+ .|+. .++....++.+. -..++|++||+|+.+..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 577899999998888777777788999999999997421 2221 233333333332 34678889999998876
Q ss_pred ccCHHHHHH----HH-HHc-----CCCEEEEecCCCCCHHH
Q 028792 130 VVSYETAKA----FA-DEI-----GIPFMETSAKSATNVEQ 160 (203)
Q Consensus 130 ~~~~~~~~~----~~-~~~-----~~~~~~~Sa~~~~gi~~ 160 (203)
+-.++++.. |. +.. .+.++++|+..|+|+-.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 665665542 33 232 35799999999998753
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.36 E-value=9.8e-13 Score=97.08 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred EEEEEEeCCChhhhch------hh-hcc-ccCCcEEEEEEeCCC---hhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792 57 IKLQIWDTAGQERFRT------IT-SSY-YRGAHGIIVVYDVTD---QESFNN-VKQWLNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~------~~-~~~-~~~~d~~i~v~d~~~---~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D 124 (203)
+...++||||+.+... .. ..+ .....++++++|... +.+|-. +..--..+. ....|+|+++||.|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence 4578999999754221 11 111 233568888888753 333321 111111122 23689999999999
Q ss_pred CCCCcc----c-CHHHHHHHHH---------------------HcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792 125 LTANKV----V-SYETAKAFAD---------------------EIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ 176 (203)
Q Consensus 125 ~~~~~~----~-~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 176 (203)
+.+..- + +++..++-.+ -.++..+-+|+.+|.|++++|..+-..+.++....
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 876421 0 1111111001 01478999999999999999999999888765543
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.33 E-value=3.5e-11 Score=91.17 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=55.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh----c
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF----R 71 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~ 71 (203)
|+++|.|+||||||+|+|.+........+.++.+.....+.+.+. ...+.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987765444455555555555554442 235899999994321 1
Q ss_pred hh---hhccccCCcEEEEEEeCC
Q 028792 72 TI---TSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 72 ~~---~~~~~~~~d~~i~v~d~~ 91 (203)
++ ....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 12 223357899999999874
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=4.5e-11 Score=84.71 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=42.6
Q ss_pred EEEEeCCChhh----hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792 59 LQIWDTAGQER----FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123 (203)
Q Consensus 59 ~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 123 (203)
+.++|+||... ....+..++..+|++++|.+++...+-.+...+.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999542 3355677789999999999999865544444444444332 34588889984
No 302
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.5e-11 Score=90.62 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCCCccccceeeEEEEEE-------ECCeEEEEEEEeCCChhhhch
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD-------DSYLESYISTIGVDFKIRTVE-------QDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~~ 72 (203)
-.+++.++|.-.||||||.++|.. +.-+.+.....+.+.....+. ..+..+++.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 459999999999999999999973 122222222233222222222 245567899999999865433
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHc------
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS---YETAKAFADEI------ 143 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~------ 143 (203)
....-.+-.|..++|+|+...-.-...+-+ +.... .-...++|+||.|...+.... .+......+.+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhh---hhhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 333334457899999998742110111111 11111 124568889999976543221 11112222211
Q ss_pred -CCCEEEEecCCC----CCHHHHHHHHHHHHH
Q 028792 144 -GIPFMETSAKSA----TNVEQAFMAMAASIK 170 (203)
Q Consensus 144 -~~~~~~~Sa~~~----~gi~~~~~~l~~~~~ 170 (203)
+.|++++||+.| +++.++.+.|...+.
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 379999999999 555555555555444
No 303
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.32 E-value=1e-10 Score=90.46 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=91.5
Q ss_pred ceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC
Q 028792 42 GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE----------SFNNVKQWLNEIDRYAS 111 (203)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~ 111 (203)
+..+....+.+.+ ..+.++|.+|+..-+..|.+++.+++++|||+++++-+ .+.+...+++.+.....
T Consensus 182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 3345555566666 77899999999988999999999999999999998532 23333445444433322
Q ss_pred -CCCcEEEEEeCCCCCCCc---------------ccCHHHHHHHHHH-----c-----CCCEEEEecCCCCCHHHHHHHH
Q 028792 112 -ENVNKLLVGNKCDLTANK---------------VVSYETAKAFADE-----I-----GIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 112 -~~~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
.+.++|++.||.|+.+.. ....+++..+... + .+-+..+.|.+-.+|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 468999999999986431 1233344333221 1 2446678999999999999999
Q ss_pred HHHHHHHhc
Q 028792 166 AASIKNRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+.....
T Consensus 340 ~d~Ii~~nl 348 (354)
T KOG0082|consen 340 TDTIIQNNL 348 (354)
T ss_pred HHHHHHHHH
Confidence 998886543
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=1.1e-10 Score=91.79 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=88.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC----CCC-------------CC-Cc---cccceee---EEEEEE-ECCeEEEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD----SYL-------------ES-YI---STIGVDF---KIRTVE-QDGKTIKLQ 60 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~-------------~~-~~---~~~~~~~---~~~~~~-~~~~~~~~~ 60 (203)
.-.+.|.|+|+-++|||||||+|.+. ... .+ .. .|+.+.+ ....+. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44588999999999999999999876 222 11 11 1222222 222232 345557889
Q ss_pred EEeCCChhhh--------ch------h---------------hhcccc-CCcEEEEEE-eCC----ChhhHHHHH-HHHH
Q 028792 61 IWDTAGQERF--------RT------I---------------TSSYYR-GAHGIIVVY-DVT----DQESFNNVK-QWLN 104 (203)
Q Consensus 61 i~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~-~~~~ 104 (203)
++||+|-..- .. - .+..+. ++|+.++|. |.+ .++.+.+.. .++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999983210 00 0 222345 899999998 775 123333333 3555
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecC
Q 028792 105 EIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 105 ~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
.+... ++|+++++|+.|-.... ..+...++..+++++++.+|+.
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHH
Confidence 55443 79999999999943221 3344556677888888887765
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=4.8e-11 Score=91.05 Aligned_cols=143 Identities=17% Similarity=0.279 Sum_probs=77.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------ccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------- 69 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (203)
..|+|+|+|.+|+|||||||.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999975443221 12233334444555677889999999999211
Q ss_pred -----------hchh---------hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 70 -----------FRTI---------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 70 -----------~~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
+... ....-..+|+++|+++++...- . ...+..+..... ..++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L-~--~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL-K--PLDIEFMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS----HHHHHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc-h--HHHHHHHHHhcc-cccEEeEEecccccCHH
Confidence 1000 0111255899999999875321 1 112223444433 58899999999986543
Q ss_pred ccC--HHHHHHHHHHcCCCEEEEecC
Q 028792 130 VVS--YETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
++. .+.+.+....+++.++.....
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S------
T ss_pred HHHHHHHHHHHHHHHcCceeeccccc
Confidence 322 223445556677877765443
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.30 E-value=2e-11 Score=94.33 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=64.8
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH--
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE-- 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~-- 134 (203)
+.+.++||+|.... ....+..+|.++++.+.. +.+++......+ .+.|.++++||+|+.........
T Consensus 127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 56889999985421 223567788888886543 333333433323 14677999999998754321110
Q ss_pred ----HHHHHHH---HcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 135 ----TAKAFAD---EIGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 135 ----~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
....+.. .+..+++++||++++|+++++++|.+.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0011111 12346999999999999999999988754
No 307
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-12 Score=90.92 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=90.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----chhhhccccCC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYRGA 81 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 81 (203)
.-||+++|.+|+||||+--.++.+.... ...++.+.++.-..+.+- ++..+++||++|++.+ .......+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3589999999999999877666443221 112233333333333222 2367899999998843 22456678999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCcc--cC----HHHHHHHHHHcCCCEEEEec
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLN---EIDRYASENVNKLLVGNKCDLTANKV--VS----YETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~iiv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~Sa 152 (203)
+++++|||++..+--.++..+-. .+....+ ...+.++.+|+|+..... .. .+....+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998764444444333 3444443 567788899999975422 11 12233333344567888887
Q ss_pred CC
Q 028792 153 KS 154 (203)
Q Consensus 153 ~~ 154 (203)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 64
No 308
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=4.9e-11 Score=93.39 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=77.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCccc--cceeeEEEEEEECCeEEEEEEEeCCChhhhchhh-----hc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYLESYIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-----SS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~ 76 (203)
...++|+|+|.+|+|||||||+|-+ ..-.. ..++ ++++.....+..... -.+.+||+||.....-.. ..
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEG-AAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTT-S--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcC-cCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3568999999999999999999964 22211 1221 111112222222211 137899999954322111 12
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCH----HHHHHHHHH--
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLT-------ANKVVSY----ETAKAFADE-- 142 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~----~~~~~~~~~-- 142 (203)
-+..-|.+|++.+-. |....- +...+.. .++|+++|-+|.|.. .+...+. +++++.+..
T Consensus 111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 356788888877632 222222 2233333 378999999999951 1222222 233333322
Q ss_pred --cC---CCEEEEecCCC--CCHHHHHHHHHHHHHHHh
Q 028792 143 --IG---IPFMETSAKSA--TNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 143 --~~---~~~~~~Sa~~~--~gi~~~~~~l~~~~~~~~ 173 (203)
.+ -++|-+|..+- .+...+.+.|.+.+...+
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 36899998874 457777777776665543
No 309
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.8e-11 Score=98.61 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=106.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC------------Ce----EEEEEEEeCCChh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD------------GK----TIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~ 68 (203)
+-+..=++|+|.-.+|||-|+..+-+...-.....+++..+....+... +. .=-+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 3455678999999999999999997654433322222222222221111 00 0126799999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------cC
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV-------------VS 132 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-------------~~ 132 (203)
.|..+.......||.+|+|+|+.. +++++.+. .+...+.|+||.+||+|-.-.+. ..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-------lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-------LLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHH-------HHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 999999999999999999999974 45543332 22334689999999999542210 00
Q ss_pred HHH-----------HHHHHHH-cC-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 133 YET-----------AKAFADE-IG-------------IPFMETSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 133 ~~~-----------~~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
..- +.+|+.+ ++ +.++++||..|+||.+++.+|+++....+..
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 000 1122211 01 3478999999999999999999987665543
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=4.7e-10 Score=82.15 Aligned_cols=85 Identities=24% Similarity=0.241 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 81 (203)
-+|+++|.|.+|||||+..+............++.+..+..+.+++ ..+++.|.||..+-. ...-...+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 6899999999999999999986554444444556677788888888 678899999954322 2233456789
Q ss_pred cEEEEEEeCCChhh
Q 028792 82 HGIIVVYDVTDQES 95 (203)
Q Consensus 82 d~~i~v~d~~~~~s 95 (203)
|+++.|.|++..+.
T Consensus 141 DlilMvLDatk~e~ 154 (364)
T KOG1486|consen 141 DLILMVLDATKSED 154 (364)
T ss_pred cEEEEEecCCcchh
Confidence 99999999986543
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.25 E-value=3.5e-11 Score=91.21 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=41.0
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 114 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 114 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
.+-++|+||+|+.+......+...+..+.. .++++++||++|+|++++.+||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 455999999999754333344444444443 4789999999999999999999774
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.22 E-value=4.9e-10 Score=92.73 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=71.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hh---
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TI--- 73 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~--- 73 (203)
-++.++|+++|.+|+||||++|+|++........ ...+..........++ ..+.++||||..... ..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 3567899999999999999999999876433221 1122222222233444 678999999955321 11
Q ss_pred hhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 028792 74 TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTA 127 (203)
Q Consensus 74 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~ 127 (203)
...++. ..|+++||..+.......+-..++..+...... -..+|||+|..|..+
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111333 479999998875322211112333334332221 246788999999875
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=3.5e-10 Score=84.12 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEEEEEeCCChhh-------------hchhhhcccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792 57 IKLQIWDTAGQER-------------FRTITSSYYR-GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122 (203)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 122 (203)
..+.++|+||... ...+...++. ..+++++|+|+...-+-...... .......+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i---a~~ld~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL---AKEVDPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH---HHHHHHcCCcEEEEEEC
Confidence 3578999999642 1223445566 45689999988643221122222 22233346899999999
Q ss_pred CCCCCC
Q 028792 123 CDLTAN 128 (203)
Q Consensus 123 ~D~~~~ 128 (203)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998753
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.4e-10 Score=87.66 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=104.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccccee------------------eEEEEEEEC------CeEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYISTIGVD------------------FKIRTVEQD------GKTIK 58 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~------------------~~~~~~~~~------~~~~~ 58 (203)
.-.++|.++|.-.-|||||.++|.+-- .+.+....++.. .+...-.+. .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 357999999999999999999998521 111111110000 000000011 11246
Q ss_pred EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 028792 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETA 136 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~ 136 (203)
+.+.|.||++-.-....+-..-.|+.++|++++.+..--..++.+-.+.-.. -+.++++=||.|+...+. .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7899999998655544445566899999999996543222334333333222 256788899999976432 345566
Q ss_pred HHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 137 KAFADEI---GIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 137 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.+|.+-. +++++++||..+.|++-+++.|.+.+.
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 6665543 579999999999999999999888774
No 315
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.19 E-value=8.4e-11 Score=94.28 Aligned_cols=162 Identities=24% Similarity=0.395 Sum_probs=123.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.++|+.|+|..++|||+|+.+++.+.+.+...+.. ..+.+++..++...-+.+.|.+|.. ...|..++|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 35899999999999999999999888766644333 3556777778888888899998832 3457788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTA--NKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~ 162 (203)
||.+.|.++|..+..+...+..+.. ...|+++++++.-... .+.+......++...+ .+.+|++++..|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 9999999999988887777755444 4678888887654432 2344455555555444 5899999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028792 163 MAMAASIKNRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
..+...+...++.
T Consensus 182 ~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 182 QEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHhh
Confidence 9998887765443
No 316
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.16 E-value=6.4e-11 Score=89.52 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=97.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh--chh------hhcccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTI------TSSYYR 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~ 79 (203)
..-|.++|..|+||||||++|..-..-+...-..+.+..........+. .+.+.||-|.-.- .++ ....+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 3578999999999999999999544433332233333333333333332 3567899883221 111 222357
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN----KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.+|+++.|.|++.|+.-......+..+....-...| ++=|-||.|..+..... +.+ ..+.+|+++|
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n--~~v~isaltg 326 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKN--LDVGISALTG 326 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------ccC--CccccccccC
Confidence 899999999999987644444455545444222222 45567888865432211 122 2788999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028792 156 TNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~~~ 174 (203)
+|++++...+-..+.....
T Consensus 327 dgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 327 DGLEELLKAEETKVASETT 345 (410)
T ss_pred ccHHHHHHHHHHHhhhhhe
Confidence 9999999998887765443
No 317
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.6e-10 Score=94.69 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=84.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC--CCC----------------CCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD--SYL----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.++.-+|.|+|+-.+|||||..+|+.. ... .+....++.......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 456789999999999999999999731 111 11122334444444455553 48899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
+-.|.......++-+|++++|+|+.+.-....-.-|++ . ...+.|.++++||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a---~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-A---DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-H---hhcCCCeEEEEECcccccc
Confidence 99999999999999999999999986433222222333 2 2336899999999997643
No 318
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.8e-10 Score=87.65 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-|...|.-.-|||||++.+.+..-+ ......++.+........++ ..+.++|.||+.++-.....-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4667888889999999999865432 33334445444444444444 478899999998877766677788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcCCCEEEEecCCCCCHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD---EIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
|+++++.-.... .+.+..+.... ....++|++|+|..+.... .+...+... ..+++++.+|+++|+|++++..
T Consensus 80 vV~~deGl~~qt-gEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQT-GEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhh-HHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999964322211 22222233222 2344899999998764311 122222222 3347899999999999999999
Q ss_pred HHHHHHH
Q 028792 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999874
No 319
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=5.7e-10 Score=87.53 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=91.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh--cCCC----------CC----------CCccccceeeEEEEEEECCeEEEEEEEeC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFA--DDSY----------LE----------SYISTIGVDFKIRTVEQDGKTIKLQIWDT 64 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~--~~~~----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (203)
+.-..+|+-.|.+|||||-.+|+ ++.+ .. +....++.+.+...+.+.+ ..+++.||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDT 88 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDT 88 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCC
Confidence 33467899999999999999986 2111 00 1122344445555556665 78899999
Q ss_pred CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 028792 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG 144 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 144 (203)
||++.+.......+..+|..+.|+|+...-. .....+++.. ...+.|++-++||.|-... -..+.+.+..+.++
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVc---rlR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~ 162 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVC---RLRDIPIFTFINKLDREGR--DPLELLDEIEEELG 162 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHH---hhcCCceEEEeeccccccC--ChHHHHHHHHHHhC
Confidence 9999999989899999999999999874221 0113333333 3347999999999996433 23456666666666
Q ss_pred CCEEEE
Q 028792 145 IPFMET 150 (203)
Q Consensus 145 ~~~~~~ 150 (203)
+...++
T Consensus 163 i~~~Pi 168 (528)
T COG4108 163 IQCAPI 168 (528)
T ss_pred cceecc
Confidence 554443
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.5e-09 Score=82.86 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=58.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC----------------eEEEEEEEeCCChh---
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG----------------KTIKLQIWDTAGQE--- 68 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~--- 68 (203)
-+++.|+|.||+|||||+|++..........|..+.+.....+.+.. ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997665444456655555554433211 13468899998832
Q ss_pred -hhchh---hhccccCCcEEEEEEeCC
Q 028792 69 -RFRTI---TSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 69 -~~~~~---~~~~~~~~d~~i~v~d~~ 91 (203)
.-.++ ...-++++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22222 333468899999999975
No 321
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.7e-10 Score=86.89 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCe------E--------------------
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI-STIGVDFKIRTVEQDGK------T-------------------- 56 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~-------------------- 56 (203)
+.+-...|+++|.-..||||+|+.|+.+.++.... +..++++....+.-+.. .
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 56667889999999999999999999988876543 33333344433322111 0
Q ss_pred -------------EEEEEEeCCChhh-----------hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q 028792 57 -------------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE 112 (203)
Q Consensus 57 -------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 112 (203)
-.++++|+||.-. +......|...+|.++++||+-.-+--++....+..+ ..+
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence 0478999999321 3344566788999999999986544444444444444 344
Q ss_pred CCcEEEEEeCCCCCCCcc
Q 028792 113 NVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 113 ~~p~iiv~nK~D~~~~~~ 130 (203)
.-.+-||.||+|+.+..+
T Consensus 211 EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred cceeEEEeccccccCHHH
Confidence 557788999999876543
No 322
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.12 E-value=3.4e-09 Score=81.70 Aligned_cols=147 Identities=18% Similarity=0.308 Sum_probs=93.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCChhh------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------ 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------ 69 (203)
...++|.++|+.|+|||||+|.|++...... ..+++....+...+.-++-.+.++++||||...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5679999999999999999999997633222 234455566666666777788999999999221
Q ss_pred ------------hchh--------h--hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 70 ------------FRTI--------T--SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 70 ------------~~~~--------~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
++.. + ...-..+++++|.+..+... +..+ .+..+..... .+.+|=|+.|+|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~--DIe~Mk~ls~-~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPL--DIEAMKRLSK-RVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHH--HHHHHHHHhc-ccCeeeeeeccccCC
Confidence 1110 1 11224588999999876432 1111 1122333332 477788899999865
Q ss_pred CcccC--HHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 128 NKVVS--YETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 128 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+.. .+.+.+....+++++|. ..+.+.-
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~ 207 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD--PYDPEDD 207 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence 44332 34456677788999885 3555443
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=9.3e-10 Score=79.66 Aligned_cols=94 Identities=23% Similarity=0.263 Sum_probs=65.1
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG 144 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 144 (203)
+...+..++..+|++++|+|++++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 46677788999999999999987642 122222212 23589999999999865322 233333333 2233
Q ss_pred C---CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 145 I---PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 145 ~---~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
. .++++||++++|+++++.+|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 6899999999999999999988763
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.09 E-value=1.6e-10 Score=85.53 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=81.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC------CC-----CCCCcc---------------ccceeeEEEEEEECC------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD------SY-----LESYIS---------------TIGVDFKIRTVEQDG------ 54 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~~---------------~~~~~~~~~~~~~~~------ 54 (203)
..+.|.|.|+||+|||||+..|... +. +|.... ......+...+.-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 5678999999999999999998631 10 111000 111223333322211
Q ss_pred ------------eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792 55 ------------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122 (203)
Q Consensus 55 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 122 (203)
..+.+.|++|.|-.+. -.....-+|.+++|.-..-.+.+..++.- +... .-++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi-----aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAG---IMEI-----ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhh---hhhh-----ccEEEEeC
Confidence 1245677787763221 12245679999999997655543222222 2222 22899999
Q ss_pred CCCCCCcccCHHHHHHHHHH-------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 123 CDLTANKVVSYETAKAFADE-------IGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 123 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.|...... ...++...... +..+++.+||.++.|++++++.|.+...
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99533211 11222222221 2358999999999999999999877544
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.8e-09 Score=81.38 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=91.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---------CccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------- 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (203)
...|.+.++|+.|.|||||||.|+...+... ...+.........+.-+|-.++++++||||...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4569999999999999999999987644322 122444445555555677788999999999221
Q ss_pred -----------hc-------hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 70 -----------FR-------TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 70 -----------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
+. ...+.-+ ..+++++|.+..+..- +..+ .+..+.... ....+|-|+-|+|.....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~--Di~~Mk~l~-~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPL--DIEFMKKLS-KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHh--hHHHHHHHh-ccccccceeeccccCCHH
Confidence 10 1111222 3688999999876431 1111 111122222 357778888999986654
Q ss_pred ccC--HHHHHHHHHHcCCCEEEEecCCC
Q 028792 130 VVS--YETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
+.. ...+.+....++++++.......
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 332 23456667778888887766654
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.7e-10 Score=90.42 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=85.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------ccccceeeEEEEEE---ECCeEEEEEEEe
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-----------------ISTIGVDFKIRTVE---QDGKTIKLQIWD 63 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D 63 (203)
..++..+|.++|+-+.|||+|+..|..+..+... ....+......++. ..++.+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 4567899999999999999999999865443221 11112222222222 356677899999
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
|||+-.+.......+..+|++++|+|+.+.-.+..- ..+++......|+++|+||+|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence 999999988888999999999999999876554322 2244455557999999999995
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=6.4e-10 Score=77.94 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=64.2
Q ss_pred chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
+.+.++.+.++|++++|+|++++..... ..+...+ ...+.|+++|+||+|+.+.... .....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV---LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH---HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 4566777888999999999987643221 1121112 1236899999999998543221 11223334456789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~ 170 (203)
||+++.|+++++..+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999987664
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=4.3e-09 Score=79.17 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=62.5
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 136 (203)
+.+.|++|.|-.+.. -.....+|.+++|.=.--.+.+ +-....+..+. -++|+||.|....+.--.+..
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~---Q~iK~GimEia-----Di~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDL---QGIKAGIMEIA-----DIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHH---HHHHhhhhhhh-----heeeEeccChhhHHHHHHHHH
Confidence 456788887743222 2345668988888765444433 33222233332 389999999543321111111
Q ss_pred H--HHH----H--HcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 137 K--AFA----D--EIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 137 ~--~~~----~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
. .+. . -+.-+++.+||.+|+|++++++.+.+...-..
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 1 111 1 12357999999999999999999988665443
No 329
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7e-09 Score=77.72 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=92.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc----------------CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD----------------DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
...+|..+|.-.-|||||..++.. +..+.+....++ +....+.++-.+..+.-.|+||+..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT--Intahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce--eccceeEEecCCceEEeccCCChHHH
Confidence 458999999999999999998752 111222223333 44444444444456778899999988
Q ss_pred chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC--
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-- 144 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 144 (203)
-.....-..+.|+.|+|+++.|..- .+.++-+.-...-+.| +++++||+|+.++.++ -..+++++...++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm----PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM----PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC----CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7777667788999999999987432 1111112112222565 4566799999875433 2346777777775
Q ss_pred ---CCEEEEecCC
Q 028792 145 ---IPFMETSAKS 154 (203)
Q Consensus 145 ---~~~~~~Sa~~ 154 (203)
.|++.-||..
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 5688878764
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=6.1e-09 Score=81.87 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=65.5
Q ss_pred hhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEE
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+.+..+.++|.+++|+|+.++. ....+..|+..+. ..+.|+++|+||+|+...... +........++.+++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 34455689999999999998765 3334455554442 236899999999999643221 22233345678899999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAA 167 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~ 167 (203)
||+++.|+++++..|..
T Consensus 156 SA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETGIGLEALLEQLRN 172 (352)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 99999999999998764
No 331
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-08 Score=82.72 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=87.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-cccccee----------------------------------------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVD---------------------------------------- 44 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~---------------------------------------- 44 (203)
+...||+|.|..++||||++|+++..+.-+.. .+++.+-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45689999999999999999999876543321 1211100
Q ss_pred --eEEEEEEECCe-----EEEEEEEeCCChh---hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q 028792 45 --FKIRTVEQDGK-----TIKLQIWDTAGQE---RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENV 114 (203)
Q Consensus 45 --~~~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 114 (203)
.....+-++.. .-.+.++|.||.+ ........+...+|++|||.++.+.-+..+-.. +......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F----f~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF----FHKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH----HHHhhccCC
Confidence 00001111111 0146789999943 455566778899999999999877655333222 233333334
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CCEEEEecCC
Q 028792 115 NKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKS 154 (203)
Q Consensus 115 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 154 (203)
.+.|+.||+|....+....+++......+. =.++.+||+.
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 456667899987665555555555433332 2488888663
No 332
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.4e-08 Score=74.10 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=85.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-----C----CccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-----S----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------- 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (203)
...|+|.|+|.+|.|||||+|+|+...... . ...|+........+.-++...+++++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 456999999999999999999997433221 1 122344455555666677778999999999221
Q ss_pred -----------hch--------hhhccc--cCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 70 -----------FRT--------ITSSYY--RGAHGIIVVYDVTDQESFNNVKQW-LNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 70 -----------~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
|.. .....+ ..+++++|.+..+... ++.+ ++.+.+.. .-..++-|+-|+|...
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs----LrplDieflkrLt-~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS----LRPLDIEFLKRLT-EVVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc----cCcccHHHHHHHh-hhheeeeeEeeccccc
Confidence 111 112223 3467888888776432 1111 11122222 2356677788999643
Q ss_pred C--cccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 128 N--KVVSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 128 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
- +..-.+.+.+-...+++.+++--..+-
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 1 111223344555667888887665543
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.92 E-value=7.8e-09 Score=79.50 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred hhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 74 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
...++.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+... ......+....+.+++.+||
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence 344588999999999999887 77777777765543 3689999999999865421 12223334456789999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAA 167 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~ 167 (203)
+++.|+++++..|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999988753
No 334
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=9e-09 Score=75.11 Aligned_cols=161 Identities=20% Similarity=0.260 Sum_probs=92.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---hhhccccCCcE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG 83 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 83 (203)
...+|+++|...+||||+-+..++.-.+.. .-..+.+.....-.+.+.-+.+.+||.||+-.+-. .....++.+.+
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 346799999999999998777665433221 11111000000011222346799999999765432 23556899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCc-ccCHH-HH-----HHHH----HHcCCCEEEE
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTANK-VVSYE-TA-----KAFA----DEIGIPFMET 150 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~~-~~~~~-~~-----~~~~----~~~~~~~~~~ 150 (203)
+|||+|+.+.- ++.+..+...+.+. .+.+..+-++++|.|..... .+..+ .+ .+++ ....+.++-+
T Consensus 105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999987532 12222222222221 22467888999999976432 11111 01 1111 1122456777
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~ 170 (203)
|..+ ..+-|+|..+++.+.
T Consensus 184 SIyD-HSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLI 202 (347)
T ss_pred eecc-hHHHHHHHHHHHHHh
Confidence 7774 588899988887665
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=98.89 E-value=8.9e-09 Score=79.58 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=63.2
Q ss_pred cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
+..++|++++|+|+.+++.... +..|+..+.. .+.|+++|+||+|+.+... ..+...+..+..+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 3455554432 3689999999999863322 122344455667889999999999
Q ss_pred CCHHHHHHHHH
Q 028792 156 TNVEQAFMAMA 166 (203)
Q Consensus 156 ~gi~~~~~~l~ 166 (203)
+|+++++..+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998863
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.87 E-value=2.3e-08 Score=78.62 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCEEEEecCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
+..++|.+++|+++....++..+..|+..+. ..+.|.++|+||+|+.+.... ..+.........+.+++++||+++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3567999999999987778888888876443 236899999999999754321 122233344566789999999999
Q ss_pred CCHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~gi~~~~~~l~~ 167 (203)
+|+++++.+|..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999999865
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.87 E-value=5.8e-09 Score=77.53 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-ccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhch
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRT 72 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~ 72 (203)
+.+....+++.|..++|||||++-++.......... ..+.+.....+..+ ..+.+.|.||- ..+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence 356779999999999999999999986544322222 33333333344443 35778999991 12222
Q ss_pred hhhccccC---CcEEEEEEeCCChh-hHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----cCHHHHHH-----
Q 028792 73 ITSSYYRG---AHGIIVVYDVTDQE-SFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV----VSYETAKA----- 138 (203)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~-s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~----- 138 (203)
+...++.+ ---+++.+|++-+- -.+ ...+| ....+.|+.+|+||+|...... .....+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~------~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW------LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH------HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 33333322 22455666766321 111 11223 2334899999999999754321 11111111
Q ss_pred --HHHHcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 139 --FADEIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 139 --~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
-......+++.+|+.++.|+++++-.|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 11122357888999999999998876654
No 338
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.84 E-value=1.6e-08 Score=71.95 Aligned_cols=91 Identities=21% Similarity=0.138 Sum_probs=60.7
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
......+.++|++++|+|++++..... ..+.. .. .+.|+++|+||+|+.+.... ....++.+.....++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~----~~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEK----IL-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHh----Hh-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 344567789999999999987643211 11111 11 24789999999998543211 112233333345789999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~ 170 (203)
|+++.|++++...+...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999988764
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=1e-08 Score=70.67 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+++++|.+|+|||||+|+|.+....... ...+.+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 7999999999999999999987654322 1222333344454544 4689999995
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=1.4e-08 Score=71.02 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=55.4
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.+.... .+....+.......++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988764321 12221 1222346899999999998543211 11112233333567899999999999999
Q ss_pred HHHHHHHHH
Q 028792 162 FMAMAASIK 170 (203)
Q Consensus 162 ~~~l~~~~~ 170 (203)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999877643
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=1.8e-08 Score=70.62 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=57.8
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+..+|++++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+.... ......+.+.+...++.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 45789999999999886421 112222223322 335899999999998643221 112222222222335789999999
Q ss_pred CHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIK 170 (203)
Q Consensus 157 gi~~~~~~l~~~~~ 170 (203)
|++++++.+.+.+.
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999977543
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=3.9e-08 Score=78.00 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=68.6
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK----AFADE 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~ 142 (203)
.+.+..+...+...++++++|+|+.+... .|...+..... +.|+++|+||+|+.... ...+.+. ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 45677777788889999999999987542 23344443332 57999999999986532 2333333 34556
Q ss_pred cCC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792 143 IGI---PFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 143 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
.++ .++.+||++|.|+++++..|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999998654
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=1.7e-08 Score=71.73 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=38.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..++++++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 4589999999999999999999986653221 2223333344444433 478999998
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=2.4e-08 Score=70.08 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..++|+++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976543321 2222223333333332 267999998
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=9.5e-08 Score=70.56 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-------chhhhccccCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 81 (203)
-++.++|.|.+||||++..|.+...+......++.........+.+ .++++.|.||..+- ........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4789999999999999999987554333222333333334444555 67889999995432 12233455779
Q ss_pred cEEEEEEeCCChhhHHHH
Q 028792 82 HGIIVVYDVTDQESFNNV 99 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~ 99 (203)
+++++|.|+..|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998776655443
No 346
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.78 E-value=2.4e-08 Score=78.37 Aligned_cols=83 Identities=16% Similarity=0.011 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh--
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF-- 70 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~-- 70 (203)
+++.|+|.|++|||||++.|.+... .....|..+.+.....+.+.+. ...+.+.|+||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 4444455544555555554442 246789999995331
Q ss_pred -----chhhhccccCCcEEEEEEeCC
Q 028792 71 -----RTITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 71 -----~~~~~~~~~~~d~~i~v~d~~ 91 (203)
.......++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223344578899999999985
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.74 E-value=4.4e-08 Score=74.84 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC---------------eEEEEEEEeCCChh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG---------------KTIKLQIWDTAGQE 68 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~ 68 (203)
+....+++.|||.|++|||||+|.|......+...|..+.+.....+.+.. ....++++|+.|..
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 455678999999999999999999998877776667776666655554432 24568999999843
Q ss_pred h----hchh---hhccccCCcEEEEEEeCC
Q 028792 69 R----FRTI---TSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 69 ~----~~~~---~~~~~~~~d~~i~v~d~~ 91 (203)
. -.++ ....++.+|+++.|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2 1222 333468899999999874
No 348
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.72 E-value=2.1e-08 Score=72.87 Aligned_cols=120 Identities=22% Similarity=0.245 Sum_probs=86.3
Q ss_pred CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 028792 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-ENVNKLLVGNK 122 (203)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK 122 (203)
-..+.+.+.|.+|+..-+..|.+++.++..++|++.++ +...+++...++..+..+.. .+.++|++.||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 33466889999999988899999999999888887765 23345555666666665544 46789999999
Q ss_pred CCCCCCc----------------ccCHHHHHHHHHHc----C------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 123 CDLTANK----------------VVSYETAKAFADEI----G------IPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 123 ~D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
.|+.+.. ..+.+.+++|..+. + +.-..+.|.+.+++.-+|..+.+.+++..
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 9987542 23334445554332 1 12346789999999999999999888653
No 349
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.72 E-value=3.7e-07 Score=71.03 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=96.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------ccccceeeEEEEEEECCe-E-------------
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY--------------ISTIGVDFKIRTVEQDGK-T------------- 56 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~------------- 56 (203)
.+..+.+.+.|.-+.|||||+-.|..+..+... .+..+.+.+...+-+++. .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456788999999999999999988755443221 112222233333322221 1
Q ss_pred -------EEEEEEeCCChhhhchh--hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 57 -------IKLQIWDTAGQERFRTI--TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 57 -------~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
--+.+.|+.|++.|... ...+-+..|..++++.++|.-+.- .++.+-.+.. .+.|++++++|+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCc
Confidence 23678999999988553 344557799999999998865421 2222222222 2689999999999976
Q ss_pred CcccC--HHHHHHH----------------------HHHcC---CCEEEEecCCCCCHHHHHHHH
Q 028792 128 NKVVS--YETAKAF----------------------ADEIG---IPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 128 ~~~~~--~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~~~~~~l 165 (203)
...+. .+++.+. +-+.+ +|+|.+|+.+|+|++-+.+.+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 53111 1111111 11112 589999999999987554443
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.70 E-value=6.1e-08 Score=68.96 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=40.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
++.++++++|.+|+|||||+++|.+..+... ....+.+.....+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4557999999999999999999998765322 2222333444444443 24789999994
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.66 E-value=4e-08 Score=68.48 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
.++++|++|||||||+|.|..... .........++.....+..++. ..++||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 588999999999999999997532 1121222233334445555433 358999996543
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.65 E-value=9.6e-08 Score=73.16 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=39.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
...++++++|.||+|||||+|+|.+....... ...+.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999976543221 1222233344444433 4689999996
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.1e-07 Score=73.12 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=40.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
...++++++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999986643221 2223333344444443 4779999995
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.65 E-value=5.8e-08 Score=70.27 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-------CCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..+++++|.+|+|||||+|+|.+..... ......+++.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3579999999999999999999754311 1112223344445554543 468999999
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1.9e-07 Score=71.46 Aligned_cols=92 Identities=23% Similarity=0.173 Sum_probs=62.1
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.....+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+... .+...++.+..+.+++.+||
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 34566789999999999987644221 1111111 2579999999999864321 11222223334568899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~ 172 (203)
+++.|++++...+.+.+.+.
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCcccHHHHHHHHHHHHHHh
Confidence 99999999999998877654
No 356
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.8e-08 Score=79.02 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcC--------CCC----------CCCccccceeeEEEEEEECCeEEEEEEEeCC
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD--------SYL----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (203)
...+.-+|.++..-.+||||.-.+++.- ..+ ......++ +.+.-+.++.+.++++++|||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergit--iqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGIT--IQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCce--eeeeeeecccccceEeeecCC
Confidence 3345568899999999999999998631 111 11222333 334344444444899999999
Q ss_pred ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 028792 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 145 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 145 (203)
|+-.|.-....+++-.|+++.|||++..-.-..+..|++ ....+.|-+.++||+|.....-. -.+....+++++
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~a 184 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGA 184 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCC
Confidence 999998888999999999999999985433223334433 33457899999999997643221 223444556665
Q ss_pred CEE--EEecCCCCCHHHHHH
Q 028792 146 PFM--ETSAKSATNVEQAFM 163 (203)
Q Consensus 146 ~~~--~~Sa~~~~gi~~~~~ 163 (203)
..+ .+..-...|....|-
T Consensus 185 k~l~l~lpi~eak~fnkg~l 204 (753)
T KOG0464|consen 185 KALKLQLPIGEAKGFNKGFL 204 (753)
T ss_pred ceEEEEecccccccccchHH
Confidence 433 333334445543333
No 357
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.63 E-value=2.1e-06 Score=67.96 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=92.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc-----------------CCCCCCC----ccccceeeEE---EEEEE-CCeEEEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD-----------------DSYLESY----ISTIGVDFKI---RTVEQ-DGKTIKLQI 61 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~-----------------~~~~~~~----~~~~~~~~~~---~~~~~-~~~~~~~~i 61 (203)
-.+=|.||||-.+||||||++|.. ++.|++. .-|+.+.+.+ ..+.. ++..+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346789999999999999999853 1222221 1122222222 12333 566789999
Q ss_pred EeCCCh-----hhh---------chhh---------------hcccc--CCcEEEEEEeCC----ChhhHHHHHH-HHHH
Q 028792 62 WDTAGQ-----ERF---------RTIT---------------SSYYR--GAHGIIVVYDVT----DQESFNNVKQ-WLNE 105 (203)
Q Consensus 62 ~D~~g~-----~~~---------~~~~---------------~~~~~--~~d~~i~v~d~~----~~~s~~~~~~-~~~~ 105 (203)
+|+-|- ..| ..-| +..+. ..-++++.-|.+ .++.+.++.+ ..+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999871 011 0001 11111 123677777766 3455555544 4444
Q ss_pred HHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 106 IDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 106 l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
|... ++|+++++|-.+-. .....+...++..+++++++++++.. -.-+++..-|.+.+.
T Consensus 176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLY 234 (492)
T ss_pred HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHh
Confidence 5444 78999999988643 33445667788889999999887663 233444444444333
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.4e-07 Score=65.99 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=38.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
...+++++|.+++|||||+++|.+..... ..++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999755322 223444333333333332 578999998
No 359
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.4e-07 Score=73.42 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=81.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++.+..+=++|+||||+||||||+.|...-....... + ....+ ...++..+++++++|.+ ... ......-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~-i---~GPiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDE-I---RGPIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhc-c---CCceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhh
Confidence 3556668889999999999999999985332111110 0 11111 23466688999999943 222 223445699
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCHHHH-----HHHHHHc-CCCEEEEecCC
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVVSYETA-----KAFADEI-GIPFMETSAKS 154 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~-----~~~~~~~-~~~~~~~Sa~~ 154 (203)
++++++|.+-.-.++.+. +++.+.. ++.| ++-|++..|+.....-....- +.|..-+ ++.+|.+|...
T Consensus 136 LVlLlIdgnfGfEMETmE-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 136 LVLLLIDGNFGFEMETME-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eeEEEeccccCceehHHH-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999999997433332222 3333333 3445 566789999875432212211 2222222 57888888654
No 360
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.9e-07 Score=69.37 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=92.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----------------ccc-------ceeeEEEEEEE----------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI----------------STI-------GVDFKIRTVEQ---------- 52 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~-------~~~~~~~~~~~---------- 52 (203)
-..++++++|.-.+|||||+-.|..+..+.... .|. +.+..-..+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 456899999999999999998887655432111 011 10000011111
Q ss_pred CCeEEEEEEEeCCChhhhchhhhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 53 DGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+...--++++|..|+..|......-+. ..|..++|+++...-.+.. ++.+..+... +.|+.++++|+|+.+...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 111224789999999888665443332 3678899999876544322 2333323332 689999999999976521
Q ss_pred ------------------------cCHHHHHHHHHHc---C-CCEEEEecCCCCCHHHHHHHH
Q 028792 131 ------------------------VSYETAKAFADEI---G-IPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 131 ------------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~gi~~~~~~l 165 (203)
-+.+++..-++.. + .|+|.+|+..|+|++-+...|
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 1112222112211 2 589999999999987655444
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=1.2e-07 Score=74.07 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=42.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+.++++|+|.|++|||||||+|.+...... .+..+.+.....+..+.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 457899999999999999999998776322 233355556666666653 789999995
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.57 E-value=8.4e-08 Score=74.60 Aligned_cols=94 Identities=24% Similarity=0.238 Sum_probs=56.2
Q ss_pred EEEEEEeCCChhhhchh----hhc--------cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792 57 IKLQIWDTAGQERFRTI----TSS--------YYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKC 123 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 123 (203)
+.+.++||||....... ... .-...+..++|+|++... .+..+.. +... -.+.-+|+||.
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~---~~~~giIlTKl 269 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA---VGLTGIILTKL 269 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh---CCCCEEEEECC
Confidence 57899999995432211 111 113467889999998533 3322222 2111 12447889999
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
|.... .=.+.......++|+..++ +|++++++-.
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 95432 2234455566799998888 7888877643
No 363
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.56 E-value=2.6e-07 Score=71.15 Aligned_cols=127 Identities=24% Similarity=0.232 Sum_probs=75.8
Q ss_pred CCChhh-hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028792 64 TAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE 142 (203)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 142 (203)
.||+.. -.......+..+|++++|+|+.++.+... .++.... . +.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 456432 22234556789999999999987644211 1111111 1 579999999999854311 1222233334
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC-CCCCCCCCccccCCCCCCCCC
Q 028792 143 IGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 143 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (203)
.+.+++.+|++++.|++++...+...+.+...... ........+....+.++.+||
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKS 135 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKS 135 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHH
Confidence 46778999999999999999998887765432111 111223344555555555544
No 364
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.54 E-value=1.2e-06 Score=79.21 Aligned_cols=113 Identities=22% Similarity=0.250 Sum_probs=67.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCC------ccccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhc
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLESY------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSS 76 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 76 (203)
.+|+|++|+||||+++.- +-.++-.. ....+.+.. ....+.+ +-.++|++|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 479999999999999976 32332110 111111111 1111222 24599999921 12233544
Q ss_pred cc---------cCCcEEEEEEeCCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 77 YY---------RGAHGIIVVYDVTDQ-----ES----FNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 77 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
++ +..|++|+++|+.+- +. ...++..++++........|++++++|+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 43 458999999998642 21 123445555666555668999999999998754
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.54 E-value=2.2e-06 Score=63.60 Aligned_cols=88 Identities=16% Similarity=0.035 Sum_probs=53.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCc-cccceeeEEEEEEEC-CeEEEEEEEeCCChhhhch------hhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLESYI-STIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRT------ITS 75 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~ 75 (203)
....-|.|+|++++|||+|+|.|++. .+..... ...+........... +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45677999999999999999999987 5543322 111112222222221 2346799999999543221 122
Q ss_pred ccccC--CcEEEEEEeCCCh
Q 028792 76 SYYRG--AHGIIVVYDVTDQ 93 (203)
Q Consensus 76 ~~~~~--~d~~i~v~d~~~~ 93 (203)
..+.. ++++|+..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 22333 8889988887643
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=3e-07 Score=64.30 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=37.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
....+++++|.||+|||||+|.|.+... .....+..+... ..+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 3568899999999999999999997653 222223333222 233333 2478999998
No 367
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=6.8e-06 Score=56.71 Aligned_cols=147 Identities=19% Similarity=0.262 Sum_probs=80.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCC-Chhh--------------h-
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-GQER--------------F- 70 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~- 70 (203)
..++|.|.|+||+||||++.++...-....+ .-..+...++.-++..+-|.+.|+. |... |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~---kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY---KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc---eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 5689999999999999999998742211111 1123445556666766777788876 3111 0
Q ss_pred ----------chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 028792 71 ----------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFA 140 (203)
Q Consensus 71 ----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 140 (203)
.......+..+|++| +|--.+-.+ ....+...+......+.|++.++++.+-. . .+.++.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~----P---~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRH----P---LVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCC----h---HHHHhh
Confidence 011222345566654 454333211 11334445555556678999888877531 1 122222
Q ss_pred HHcCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 141 DEIGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 141 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
...++.++ .+.+|-+.++..+.+.+.
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 22223333 445555677777776653
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=2.9e-07 Score=72.44 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=36.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
++|+|.+|||||||||+|++..... .......++.....+..++. ..++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 7899999999999999999654321 11112223334444444432 248999997653
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=5.3e-07 Score=62.06 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=52.0
Q ss_pred hccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 75 SSYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
...+..+|++++|+|+.++.+.. .+..++. ... .++|+++++||+|+.+... .....++.+..+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34568899999999998876432 2333322 221 3689999999999864322 22344555566788999999
Q ss_pred CCCCC
Q 028792 153 KSATN 157 (203)
Q Consensus 153 ~~~~g 157 (203)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.49 E-value=2.2e-06 Score=65.42 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=56.7
Q ss_pred EEEEEEeCCChhhhchhhh-------cc-----ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792 57 IKLQIWDTAGQERFRTITS-------SY-----YRGAHGIIVVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKC 123 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 123 (203)
+.+.++||||......... .. -...|.+++|+|++.. +.+..+.. +.... .+.-+|+||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNEAV---GLTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHhhC---CCCEEEEEcc
Confidence 5788999999654322211 11 1248999999999743 23322222 22211 2457789999
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 124 DLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
|.... .=.+.......+.|+..++ +|++++++-..
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 96432 2234445556688988887 78888766433
No 371
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.3e-06 Score=66.99 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=90.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc----------------CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD----------------DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
...+|.-+|.-.-|||||-.++.. ++-+++... +.++....+.+.-....+.=.|+||+..|
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCchHHH
Confidence 347888899999999999888742 111222222 33444545555444455567799999988
Q ss_pred chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHcC---
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV---VSYETAKAFADEIG--- 144 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 144 (203)
-.....-..+.|+.|+|+.++|..-- ..++.+-..+... -..+++++||.|+.++.+ +-+.+++++...++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777777889999999999985431 1122221122221 245677789999985433 22345677777764
Q ss_pred --CCEEEEecC
Q 028792 145 --IPFMETSAK 153 (203)
Q Consensus 145 --~~~~~~Sa~ 153 (203)
+|++.-||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 689887755
No 372
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=7e-07 Score=73.13 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=75.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC-----CC-------------CCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDS-----YL-------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
+.-+|.++-.-.+||||+-++.+.-. +. ......++.......+.+. +++++++||||+-
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence 44578888888999999999876311 00 0111122222222233343 5889999999998
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
.|.-.....+.-.|+.|+++|+...-.-.....|++ +.++ +.|.+.++||+|-..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMG 170 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcC
Confidence 888778888899999999999875432122233433 3333 689999999999653
No 373
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=1.5e-06 Score=60.98 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
++++|+.|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999854
No 374
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.44 E-value=3.9e-07 Score=69.29 Aligned_cols=57 Identities=26% Similarity=0.284 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
-.+++|++|+|||||+|+|... ..+........++.....+..+++.. ++||||...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCc
Confidence 4689999999999999999852 23333334445556666666643323 889999755
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.43 E-value=2.6e-06 Score=67.76 Aligned_cols=92 Identities=25% Similarity=0.410 Sum_probs=60.6
Q ss_pred hhchhhhccccCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHc
Q 028792 69 RFRTITSSYYRGAH-GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK----AFADEI 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~~ 143 (203)
.+....... ...+ .+++|+|+.|... .|...+..... +.|+++|+||+|+... ....+.+. .+++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFNG-----SWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCCC-----chhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 344433333 4444 9999999987442 23444444333 5799999999999653 22233333 335555
Q ss_pred CC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792 144 GI---PFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 144 ~~---~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 68999999999999999998654
No 376
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.5e-07 Score=74.25 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=78.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCC--CC----------CCC--ccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDS--YL----------ESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
++.+..-+|+++..-.-|||||+..|+... .+ ... ..+.+.+.....+..-.+++.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 455667789999999999999999997322 11 111 1122222222233343455889999999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQ---ESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 124 (203)
.|.+.......-+|++++++|+... +++.-+++ .+. .+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq---~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ---AWI----EGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH---HHH----ccCceEEEEehhh
Confidence 9999998888999999999999754 34333333 221 2456688999999
No 377
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.6e-06 Score=60.76 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=99.7
Q ss_pred eEEEEEcCCCC--cHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 9 FKLLLIGDSGV--GKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 9 ~~i~i~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.-++|+|..|+ ||.+|+.+|....+.....+...+++..+++...-....+.+.-.+--+++.-..........++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999999 9999999999888776666665556665555332222233333222212221112223345678999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------------------------------------
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK------------------------------------- 129 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------------------------------- 129 (203)
|||.+....+..++.|+.--.-.. ---++.++||.|-....
T Consensus 85 vfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 999999989988998875321111 12235568898864320
Q ss_pred -------ccCHHHHHHHHHHcCCCEEEEecCC------------CCCHHHHHHHHHHHHH
Q 028792 130 -------VVSYETAKAFADEIGIPFMETSAKS------------ATNVEQAFMAMAASIK 170 (203)
Q Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~l~~~~~ 170 (203)
........+|+..+++.+++.++.+ ..|+..+|..|...++
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0111234578888899999988742 3478888887766544
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.41 E-value=6.5e-07 Score=70.03 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=55.9
Q ss_pred EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++||+|....... ...+ ....|.+++|+|+...+ ....+.. +.... ..--+++||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~---~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV---GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC---CCCEEEEeeecCCCCc
Confidence 45889999996432111 1111 23578899999987543 2222222 21111 2346789999975321
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
=.+...+...+.|+..++ +|++++++..+
T Consensus 296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 223444556688988887 78999876543
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=6.8e-07 Score=67.24 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC------CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYL------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.++++|++|+|||||+|+|.+.... ........++.....+...+. .++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 6789999999999999999965322 111111222333333444332 5999999643
No 380
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=2.7e-06 Score=67.45 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=56.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSA 155 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 155 (203)
+..++|.+++|+++..+-....+..++..+.. .+.+.+||+||+|+.+... +....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 46889999999999643333333344333333 3577789999999975411 11222222 34678999999999
Q ss_pred CCHHHHHHHHH
Q 028792 156 TNVEQAFMAMA 166 (203)
Q Consensus 156 ~gi~~~~~~l~ 166 (203)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999988873
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=9.1e-07 Score=69.73 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=35.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC------CCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
++|+|++|+|||||||+|+...... .......++.....+...++. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999654321 111111233334444443322 5899999643
No 382
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.36 E-value=3.5e-05 Score=62.95 Aligned_cols=106 Identities=13% Similarity=0.221 Sum_probs=64.3
Q ss_pred EEEEEeCCChhh-------------hchhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792 58 KLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKC 123 (203)
Q Consensus 58 ~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 123 (203)
+..+.|.||... ...+...+..+.+++|+|+---+-+. -..+..+ +...-+.+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHH---HHhcCCCCCeeEEEEeec
Confidence 578999999321 23345677899999999985322211 1112222 334445688899999999
Q ss_pred CCCCCcccCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHHHHHH
Q 028792 124 DLTANKVVSYETAKAFADEIG-----IPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 124 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
|+.+.+..+...+..+..-.- ..||.+-.-.|. -++..+.|.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn-ssdSIdaIR~ 537 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN-SSESIEAIRE 537 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC-cchhHHHHHH
Confidence 999887777787777654321 235555443332 2344444443
No 383
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.33 E-value=4.7e-06 Score=67.01 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=83.4
Q ss_pred eEEEEEEE-CCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-C
Q 028792 45 FKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEIDRYAS-E 112 (203)
Q Consensus 45 ~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~ 112 (203)
+....+.+ .+ ..+.++|++|+...+..|..++.+++++|||+++++- ..+.+...++..+..... .
T Consensus 225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 44444555 44 7789999999998899999999999999999998632 234454555555543322 4
Q ss_pred CCcEEEEEeCCCCCCC----------------cc--cCHHHHHHHHHHc------------CCCEEEEecCCCCCHHHHH
Q 028792 113 NVNKLLVGNKCDLTAN----------------KV--VSYETAKAFADEI------------GIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 113 ~~p~iiv~nK~D~~~~----------------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~gi~~~~ 162 (203)
+.|++|++||.|+... .. -..+.+..|.... .+.+..++|.+.+.+..+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 7899999999996321 01 2345555444322 1245678888888999998
Q ss_pred HHHHHHH
Q 028792 163 MAMAASI 169 (203)
Q Consensus 163 ~~l~~~~ 169 (203)
..+.+.+
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 8887653
No 384
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.1e-06 Score=66.61 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=71.1
Q ss_pred EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHH
Q 028792 58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYET 135 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~ 135 (203)
.+.+.|+||++-.......-..-.|++++++..+....-....+.+..+.-+. -+.++++-||.|+....+. ..+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 46788999987654433333344688888888774321111122222222221 2467888999999765332 2344
Q ss_pred HHHHHHHc---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 136 AKAFADEI---GIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 136 ~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+..|.... ++|++++||.-+.+++-+.+.+.+.+-
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 55555543 579999999999999999999988764
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=1.6e-06 Score=69.03 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC----CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
-+++++|.+|||||||||+|+...... ...+..+++.....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 378999999999999999998543111 01112233334444444432 3699999964
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.27 E-value=2e-06 Score=68.34 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC----CCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.+++++|.+|+|||||+|+|+...... ...+..+++.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 479999999999999999999743210 1111223333344444432 246999999643
No 387
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=70.79 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
.+.|.+||.|||||||+||+|.+.+.-.. ..|.+-+....++.+.. .+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 69999999999999999999998764332 23333334444554443 3679999993
No 388
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=5.8e-06 Score=61.91 Aligned_cols=119 Identities=19% Similarity=0.302 Sum_probs=71.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----ccccceeeEEEEEEECCeEEEEEEEeCCChh-------hhchh-
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESY----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-------RFRTI- 73 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~- 73 (203)
...|+|+.+|..|.|||||+..|++..+.... .+.+........+.-.+..+++++.||.|.. .|...
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 46799999999999999999999987765433 3344444444444445666889999999821 11111
Q ss_pred ---------------------hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 74 ---------------------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 74 ---------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
....-...+++++.+..+.. ++..+.. ...+.......+|-++-|.|....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhhH
Confidence 11112446788888887653 3222222 111122234556667778886544
No 389
>PRK13695 putative NTPase; Provisional
Probab=98.23 E-value=4.3e-05 Score=54.48 Aligned_cols=80 Identities=6% Similarity=0.099 Sum_probs=43.9
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+..+++ +++|--.+..... ..+.+.+......+.|++++.||... .....++....+..++.+ +.+
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~ 159 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPE 159 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cch
Confidence 3455666 6777321111111 22344444444457899999998532 122344445555667766 456
Q ss_pred CHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASI 169 (203)
Q Consensus 157 gi~~~~~~l~~~~ 169 (203)
+-+++...+.+.+
T Consensus 160 ~r~~~~~~~~~~~ 172 (174)
T PRK13695 160 NRDSLPFEILNRL 172 (174)
T ss_pred hhhhHHHHHHHHH
Confidence 6678877777755
No 390
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.6e-06 Score=66.02 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=96.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
-..++++|+|.-.+||||+-..++... -........+.+.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 456899999999999999876654210 0111111223333333444433
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCc-
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTANK- 129 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~-l~~~~~~~~p~iiv~nK~D~~~~~- 129 (203)
.++++.|+||+..|-...-.-..++|+.++|+++...+ .|+..-+.+.. +......-..+|+++||+|-...+
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 57899999999888777767778899999999985321 23333222222 222222346778999999965321
Q ss_pred -ccCH----HHHHHHHHHcC------CCEEEEecCCCCCHHHHHH
Q 028792 130 -VVSY----ETAKAFADEIG------IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 130 -~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 163 (203)
.... +.+..|....+ ..++++|..+|.++.+...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1112 22334444332 5699999999999988765
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.15 E-value=2.7e-05 Score=62.80 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=44.5
Q ss_pred EEEEEEeCCChhhhchhh----hcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTIT----SSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.|+||+|........ ..+ ....|.++||+|++-.+.-.. ....+... -.+.-+|+||.|-...-
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~arg- 255 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHAKG- 255 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCCCc-
Confidence 678999999954332211 111 235688999999875432211 11222211 23557889999964321
Q ss_pred cCHHHHHHHHHHcCCCEEEE
Q 028792 131 VSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~ 150 (203)
=.+.......+.|+..+
T Consensus 256 ---G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 256 ---GGALSAVAATKSPIIFI 272 (429)
T ss_pred ---cHHhhhHHHHCCCeEEE
Confidence 11233344455555444
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.15 E-value=3e-05 Score=60.56 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=45.7
Q ss_pred EEEEEEeCCChhhhchhhhcccc--------CCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 57 IKLQIWDTAGQERFRTITSSYYR--------GAHGIIVVYDVTDQESFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
....++++.|..........++. ..+.+|.|+|+.+-.... .......++.. .-+|++||.|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 34567788886544443333321 257899999986432211 11111222221 1288999999876
Q ss_pred CcccCHHHHHHHHHHcC--CCEEEEe
Q 028792 128 NKVVSYETAKAFADEIG--IPFMETS 151 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~S 151 (203)
.. +.+.+..+..+ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 44555555544 5666554
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=4.7e-05 Score=60.41 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC---CCCCccccceee------------------EEEEEEE---------CCeEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSY---LESYISTIGVDF------------------KIRTVEQ---------DGKTIK 58 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~---------~~~~~~ 58 (203)
-.++++|++|+||||++.+|..... .....-.++.+. ....+.. .-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 4688999999999999999974311 000000000000 0011100 011246
Q ss_pred EEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028792 59 LQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANK 129 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~ 129 (203)
+.++||+|....... ...+ .....-.++|++++. .+.+.++...+......... ...--+|++|.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 889999996533222 1111 123445688999875 34444433322222111000 012356789999542
Q ss_pred ccCHHHHHHHHHHcCCCEEEEe
Q 028792 130 VVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~S 151 (203)
..=.+..+....+.|+..++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 23345566666677765554
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=59.00 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=66.2
Q ss_pred chhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEE
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME 149 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (203)
..+.+.-..+.|-+++|+.+.+|+- ..-+..++-... ..+...+|++||+|+.+......++........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae---~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE---AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH---HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 3445555677888899999888763 322333332222 235666788999999876554434566677788999999
Q ss_pred EecCCCCCHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~ 167 (203)
+|+++++|++++...+..
T Consensus 147 ~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 147 VSAKNGDGLEELAELLAG 164 (301)
T ss_pred ecCcCcccHHHHHHHhcC
Confidence 999999999999988754
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.13 E-value=6.7e-06 Score=63.71 Aligned_cols=57 Identities=33% Similarity=0.345 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC-Ccc-----ccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLES-YIS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.++++|++|+|||||+|.|.+...... ..+ ...++.....+..++. ..++|+||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 588999999999999999987543221 111 1112233344444432 35899999643
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=3.2e-05 Score=56.16 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=46.7
Q ss_pred EEEEEEeCCChhhhch----hhhccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRT----ITSSYY--RGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++||+|...... ....++ ...+-+++|++++... .+..+..++. .. .+--++++|.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~---~~----~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE---AF----GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH---HS----STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh---cc----cCceEEEEeecCCC--
Confidence 4588999999543221 111111 2577899999998644 3332222221 11 12256799999532
Q ss_pred ccCHHHHHHHHHHcCCCEEEEe
Q 028792 130 VVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~S 151 (203)
..-.+..+....+.|+-.++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE
T ss_pred --CcccceeHHHHhCCCeEEEE
Confidence 23445666677787766655
No 397
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1.5e-05 Score=71.11 Aligned_cols=115 Identities=23% Similarity=0.228 Sum_probs=64.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCC-Cc--cccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhcc--
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLES-YI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSY-- 77 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~-- 77 (203)
-+|||+||+||||++..--.+..... .. ...........-...+ .-.++||.|.- .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 47899999999999875432211111 00 0000000001111122 34588988821 223344444
Q ss_pred -------ccCCcEEEEEEeCCC-----hhh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 78 -------YRGAHGIIVVYDVTD-----QES----FNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 78 -------~~~~d~~i~v~d~~~-----~~s----~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
.+..|++|+.+|+.+ +.. ...++.-++++.....-..|+++++||.|+...
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 366899999999863 211 122344455565555567999999999998764
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.13 E-value=0.00014 Score=56.77 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=54.1
Q ss_pred EEEEEeCCChhhhchhhhccc--------cCCcEEEEEEeCCChhhHHH-HHH-HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESFNN-VKQ-WLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
...++++.|...-......+. -..|+++-|+|+..-..... ... ...++ .+. =+|++||.|+.+
T Consensus 86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-a~A-----D~ivlNK~Dlv~ 159 (323)
T COG0523 86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-AFA-----DVIVLNKTDLVD 159 (323)
T ss_pred CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-HhC-----cEEEEecccCCC
Confidence 456778877554433333332 23578999999875333221 222 22223 222 288999999987
Q ss_pred CcccCHHHHHHHHHHcC--CCEEEEecCCCCCHHHH
Q 028792 128 NKVVSYETAKAFADEIG--IPFMETSAKSATNVEQA 161 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~ 161 (203)
... .+.........+ ++++.++.. +.+..++
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~l 192 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSYG-DVDLAEL 192 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHh
Confidence 653 455555556655 678888773 3444433
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=6.2e-06 Score=63.53 Aligned_cols=59 Identities=29% Similarity=0.287 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCC-c-----cccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESY-I-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
-.++++|++|+|||||+|.|.+....... . ....++.....+...+. ..++|+||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999999975433211 1 11122333344444422 258999997543
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=4.7e-05 Score=54.16 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=45.3
Q ss_pred EEEEEEeCCChhhhc----hhhhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFR----TITSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
..+.++|++|..... .....+. ...+.+++|+|+..... .......+.... + ..-++.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 457889999964221 1111111 34899999999865432 122222232222 2 34677899996532
Q ss_pred cCHHHHHHHHHHcCCCEEE
Q 028792 131 VSYETAKAFADEIGIPFME 149 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (203)
.-.+.+.+...++|+..
T Consensus 155 --~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 --GGAALSIRAVTGKPIKF 171 (173)
T ss_pred --cchhhhhHHHHCcCeEe
Confidence 22233356666766644
No 401
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.09 E-value=8e-05 Score=58.31 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=85.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCccccceeeEE-------------------
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE------------------SYISTIGVDFKI------------------- 47 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~------------------- 47 (203)
+=.+.+|+++|.-.+|||||+-.|.+.+.+. ...++++.++--
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3456899999999999999997776543321 111111111110
Q ss_pred EEEEECCeEEEEEEEeCCChhhhchhhhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 48 RTVEQDGKTIKLQIWDTAGQERFRTITSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
+.-.+.+..--++++|+.|++.|....-.- -...|..++++-++-.- +....+.+..... ...|+++|++|+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEeecc
Confidence 011122223357899999999886533222 23467788888765321 1111222221111 26899999999998
Q ss_pred CCCcccCH--HHHHHH--------------------------HHHcCCCEEEEecCCCCCHHHH
Q 028792 126 TANKVVSY--ETAKAF--------------------------ADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 126 ~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
-..+.+.+ ..+..+ ..+.-+++|.+|-.+|.++.-+
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 65433211 111111 1222368999999999998643
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.06 E-value=1e-05 Score=57.96 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=40.2
Q ss_pred EEEEEEeCCChhhhchh--hhc---cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 57 IKLQIWDTAGQERFRTI--TSS---YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~--~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
....++++.|......+ ... ..-..+.+|.|+|+..-.....+...+..-..... ++++||.|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence 34567777775443333 000 12346889999999654322233332222222222 8899999986543 2
Q ss_pred CHHHHHHHHHHcC
Q 028792 132 SYETAKAFADEIG 144 (203)
Q Consensus 132 ~~~~~~~~~~~~~ 144 (203)
..+...+..+..+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2244445544443
No 403
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.01 E-value=2.7e-05 Score=55.14 Aligned_cols=135 Identities=18% Similarity=0.291 Sum_probs=66.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeC-CChh--------------------
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT-AGQE-------------------- 68 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~-------------------- 68 (203)
+|++.|+||+|||||+++++..-.... .....+....+..++...-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~---~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG---LPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC---GGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC---CccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999874321100 0112234444444454555566666 2211
Q ss_pred --hhchhhhccc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 028792 69 --RFRTITSSYY----RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC-DLTANKVVSYETAKAFAD 141 (203)
Q Consensus 69 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~~~ 141 (203)
.+.......+ ..+| ++++|=-.+-.+ ....|.+.+......+.|++.++.+. +. ..+.++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 0111111111 3445 777774322110 01234555555555678888888777 32 12445555
Q ss_pred HcCCCEEEEecCCCCCH
Q 028792 142 EIGIPFMETSAKSATNV 158 (203)
Q Consensus 142 ~~~~~~~~~Sa~~~~gi 158 (203)
..++.++.++..+.+-+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 66788888877665444
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.00 E-value=2.9e-05 Score=53.82 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 124 (203)
.+.+.++|++|... ....++..+|.++++....-.+.+.-++. .+.. ..-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA---GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh---hHhh-----hcCEEEEeCCC
Confidence 35788999988542 23358889999999998763332211111 1111 23388999997
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.92 E-value=2.1e-05 Score=56.66 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=58.8
Q ss_pred EEEEEeCCChhhhch---hhhccc---cC---CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 58 KLQIWDTAGQERFRT---ITSSYY---RG---AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~---~~~~~~---~~---~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
.+.++|+||+.+... ....++ ++ --++++++|..= -++..-+.--+..+.....-..|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 467999999765321 111111 11 225666666431 12222222333333444444689999999999875
Q ss_pred CcccCHHHH-------------------------------HHHHHHcC-CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 128 NKVVSYETA-------------------------------KAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 128 ~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.. +.+++ .++...++ +.+++....+-+.++.++..+-..+
T Consensus 179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 41 11111 11122223 4677888888888888887765544
No 406
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.89 E-value=0.0015 Score=45.92 Aligned_cols=144 Identities=10% Similarity=0.097 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
....|+++|..+.++..|..++...... +......... + =.|. + ....=...|.++|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s--L-----PLp~--e----~~~lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS--L-----PLPS--E----NNNLRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc--C-----CCcc--c----ccCCCceeEEEEE
Confidence 4678999999999999999999863211 1111111111 0 0111 1 1112356899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
++|.....++..++.-+..+....-. ..+.++++-....+...+...++.+++..++++++.+.....++...+-..|.
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL 149 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL 149 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence 99999999988888766655332222 45677888887777778889999999999999999999999989888888888
Q ss_pred HHHHHHhc
Q 028792 167 ASIKNRMA 174 (203)
Q Consensus 167 ~~~~~~~~ 174 (203)
+.+..-..
T Consensus 150 ~~lqi~aG 157 (176)
T PF11111_consen 150 RMLQICAG 157 (176)
T ss_pred HHHHHHcC
Confidence 87665433
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00036 Score=57.68 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=48.0
Q ss_pred EEEEEEeCCChhhhchhh----hccc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 57 IKLQIWDTAGQERFRTIT----SSYY-RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
..+.|+|++|........ ..+. ......++|++.+. +...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence 578899999954322111 0010 11234567777663 22233333322222 246678999999632
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 132 SYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..-.+.......+.++..++. |..+
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 234556666677777666643 4444
No 408
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.88 E-value=1.4e-05 Score=62.70 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=43.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
...+++.|+|.|++||||+||+|.....-.. ..+.+.+...+.+..+. .+.++|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 4669999999999999999999997654221 23444445566666654 5789999994
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=6.5e-05 Score=60.55 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=49.0
Q ss_pred EEEEEEeCCChhhhc----hhhhccc--cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFR----TITSSYY--RGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++||+|..... .....+. ....-.++|+|++. .+.+.++.. .+... ..--++++|.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~------~f~~~-~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS------AYQGH-GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH------HhcCC-CCCEEEEEeeeCCC--
Confidence 357899999954321 1122221 23456789999874 333332222 22221 23366799999543
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..=.+..+....+.++..++. |.++
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt~--Gq~V 365 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVTN--GQKV 365 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEEC--CCCc
Confidence 233455666777877766653 4555
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.83 E-value=4.4e-05 Score=61.94 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=46.1
Q ss_pred EEEEEeCCChhhhchhh----hc--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 58 KLQIWDTAGQERFRTIT----SS--YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.+.|+||+|........ .. -...+|.+++|+|++.... .......+.... ...-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l---~i~gvIlTKlD~~a~--- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV---GIGGIIITKLDGTAK--- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC---CCCEEEEecccCCCc---
Confidence 68899999965432211 11 1346789999999876421 112222222111 133667899996432
Q ss_pred CHHHHHHHHHHcCCCEEEEec
Q 028792 132 SYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.=.+.......+.|+..++.
T Consensus 248 -~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEec
Confidence 12244455566777665543
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00041 Score=55.34 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.++||+|....... ...++ ...+.++||+|++-.. ..+......+... ..--++++|.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 56889999995432111 12222 2356788999875322 1222332223221 233678999996432
Q ss_pred cCHHHHHHHHHHcCCCEEEEe
Q 028792 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
.=.+..++...++|+..++
T Consensus 393 --~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2235556666777765554
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.83 E-value=0.00011 Score=41.66 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=29.6
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792 79 RGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 124 (203)
.-.++++|++|++... ++++-..++..++.... +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 4478999999999654 55565667777877654 689999999998
No 413
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.82 E-value=0.00012 Score=54.64 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=80.0
Q ss_pred eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC-CC
Q 028792 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE----------SFNNVKQWLNEIDRYAS-EN 113 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~ 113 (203)
+....+.++. ++|+++|.+|+..-+..|...++++.++|||+..++-+ .+.+...++..+....- ..
T Consensus 192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 3333444444 77999999999988999999999999999999987421 23333333333322211 34
Q ss_pred CcEEEEEeCCCCCCCcc----------------------------cCHH--HHHHHH----HH---------cCCCEEEE
Q 028792 114 VNKLLVGNKCDLTANKV----------------------------VSYE--TAKAFA----DE---------IGIPFMET 150 (203)
Q Consensus 114 ~p~iiv~nK~D~~~~~~----------------------------~~~~--~~~~~~----~~---------~~~~~~~~ 150 (203)
..+|++.||.|+..... .+.. .+.-+. .. +-+.+..+
T Consensus 270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT 349 (379)
T KOG0099|consen 270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 349 (379)
T ss_pred hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence 77899999999853210 0000 001011 11 11445678
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
.|.+-++|..+|....+.+...
T Consensus 350 cAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 350 CAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred EeechHHHHHHHHHHHHHHHHH
Confidence 8999999999999888776643
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=7.5e-05 Score=60.60 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=49.8
Q ss_pred EEEEEEeCCChhhhc----hhhhcccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFR----TITSSYYR---GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++|++|..... .....++. ...-+.+|++++-.. ..+.+....+. ..+ +--+++||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~---~~~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS---RLP-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC---CCC-CCEEEEecccccc--
Confidence 568899999964332 11222333 234677888886422 22233222222 111 2357899999532
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..-.+..+....++++..++. |.++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~--Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTN--GQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeC--CCCC
Confidence 233566777788888776653 4444
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.00024 Score=57.61 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=46.3
Q ss_pred EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.|+||+|....... ...+ .-..+.+++|+|+...+. .......+.... ...-+|+||.|-....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~---~i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL---GLTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 56889999995332111 1111 125677899999865332 222222232211 1235678999953221
Q ss_pred cCHHHHHHHHHHcCCCEEEEec
Q 028792 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
=.+.......++|+..++.
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1255556677777766554
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.00051 Score=54.61 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCCC-ccccceeeEEE-----------------EEEE----------CCeEEEE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY--LESY-ISTIGVDFKIR-----------------TVEQ----------DGKTIKL 59 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~--~~~~-~~~~~~~~~~~-----------------~~~~----------~~~~~~~ 59 (203)
-|++|||.||||||.+-+|..... .... ..-++++.+-. .+.. .-....+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 578999999999999998865332 1110 00011111000 0000 1112468
Q ss_pred EEEeCCChhhhchhh----hcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 028792 60 QIWDTAGQERFRTIT----SSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY 133 (203)
Q Consensus 60 ~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~ 133 (203)
.++||.|...++... ..++. ...-+.+|++++... ..+...+..+... +.. -++++|.|-. -..
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~---~i~-~~I~TKlDET----~s~ 354 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF---PID-GLIFTKLDET----TSL 354 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC---Ccc-eeEEEccccc----Cch
Confidence 899999966554432 22322 234566778876532 2333333333222 222 4568999943 223
Q ss_pred HHHHHHHHHcCCCEEEEe--cCCCCCHHHH-HHHHHHHHHHHhc
Q 028792 134 ETAKAFADEIGIPFMETS--AKSATNVEQA-FMAMAASIKNRMA 174 (203)
Q Consensus 134 ~~~~~~~~~~~~~~~~~S--a~~~~gi~~~-~~~l~~~~~~~~~ 174 (203)
=.+.......+.|+-.++ ..-.+++..+ -.||++.+.....
T Consensus 355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 334455555566654443 2223333322 2455555554433
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.72 E-value=0.00025 Score=57.50 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=47.8
Q ss_pred EEEEEEeCCChhhhchh----hhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.++||+|....... ...+ .-..|.+++|+|+...+ +.......+.... ...-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 46889999994332111 1111 23478889999987543 2223323332221 1336679999953221
Q ss_pred cCHHHHHHHHHHcCCCEEEEec
Q 028792 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
=.+.......++|+..+..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1255666677888766554
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.71 E-value=7e-05 Score=57.09 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=36.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCCh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY------LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+..+++.|+|-||+|||||||++..... .....+.++..+... +.+.+.. .+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence 4568999999999999999999863211 112223333222221 3333322 2678999994
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.68 E-value=0.00019 Score=49.26 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=60.0
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC
Q 028792 12 LLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91 (203)
Q Consensus 12 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
+.-|.+|+|||++--.+...-.... .+..-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3457789999998776642110000 0011000000 000111568899999743 333456789999999999876
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 92 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
..++..+...++.+.... ...++.+|+|+.+.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 334444444444444332 24577899999974
No 420
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.68 E-value=0.00028 Score=45.99 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=57.5
Q ss_pred EEE-cCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeC
Q 028792 12 LLI-GDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90 (203)
Q Consensus 12 ~i~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
+++ +..|+||||+...|...-.......+.-.+.. .... ..+.++|+|+... ......+..+|.++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ 74 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC
Confidence 443 45789999988777532111100011111111 1111 1578999998543 2334567889999999976
Q ss_pred CChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028792 91 TDQESFNNVKQWLNEIDRYASE-NVNKLLVGNK 122 (203)
Q Consensus 91 ~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK 122 (203)
+ ..++..+..+++.+...... ...+.+|+|+
T Consensus 75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5 44556666666666554433 3566777775
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.67 E-value=0.00036 Score=44.10 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-hhccccCCcEEEEEEe
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIVVYD 89 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 89 (203)
+++.|.+|+||||+...+...-....+ .....+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999988743211110 111122 5779999985432221 1456678999999998
Q ss_pred CCCh
Q 028792 90 VTDQ 93 (203)
Q Consensus 90 ~~~~ 93 (203)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7643
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00034 Score=60.22 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=49.5
Q ss_pred EEEEEEeCCChhhhc----hhhhcc--ccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFR----TITSSY--YRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.|+||+|..... .....+ ....+-.++|+|++. .+.+.++... +...... .+--+|++|.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~---f~~~~~~-~i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA---YRHGAGE-DVDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH---HhhcccC-CCCEEEEeccCCCCC-
Confidence 468899999943221 111111 234567889999874 3333333332 2221110 133577999995432
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
.=.+..+....++|+..++. |++|
T Consensus 339 ---~G~iL~i~~~~~lPI~yit~--GQ~V 362 (767)
T PRK14723 339 ---LGPALDTVIRHRLPVHYVST--GQKV 362 (767)
T ss_pred ---ccHHHHHHHHHCCCeEEEec--CCCC
Confidence 23355566677777766643 5555
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00021 Score=57.41 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC-CCC---------CC------------ccccceeeEEEE-E-----EECCeEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS-YLE---------SY------------ISTIGVDFKIRT-V-----EQDGKTIKLQ 60 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~-~~~---------~~------------~~~~~~~~~~~~-~-----~~~~~~~~~~ 60 (203)
.-++++|++||||||++.+|.... ... .. ....+....... . ........+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999986321 000 00 000011111000 0 0011235678
Q ss_pred EEeCCChhhhch----hhhcccc-----CCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 61 IWDTAGQERFRT----ITSSYYR-----GAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 61 i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
++||+|...... .+..++. ...-.++|+|++... ....+.. .+..- .+--+|++|.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~------~f~~~-~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK------AYESL-NYRRILLTKLDEADF-- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH------HhcCC-CCCEEEEEcccCCCC--
Confidence 999999542111 1222221 234678999987543 3222222 22111 233678999995422
Q ss_pred cCHHHHHHHHHHcCCCEEEEe
Q 028792 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
.=.+.......+.|+..++
T Consensus 375 --~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 2235555666777765554
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00041 Score=47.19 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-.+++.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 425
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.63 E-value=0.00033 Score=45.35 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=48.9
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 11 LLLIG-DSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 11 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
|.|.| ..|+||||+...|...-.... .+.. .+..+.. +.+.++|+|+... ......+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl-------~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL-------LIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE-------EEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56667 568999999888763221111 1111 1111111 5688999998543 223367788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028792 90 VTDQESFNNVKQWLN 104 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~ 104 (203)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00045 Score=54.84 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.++||+|....... ...+. ...+.+++|.++.. ...++...+. .+.. -.+--+++||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~---~f~~-l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILP---KLAE-IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHH---hcCc-CCCCEEEEEcccCCC---
Confidence 57889999996433221 11222 23466677777632 2222233222 2222 123467799999542
Q ss_pred cCHHHHHHHHHHcCCCEEEEec
Q 028792 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
..=.+.......+.|+..++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 223355666677877766653
No 427
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.59 E-value=0.0018 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678999999999999999853
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.59 E-value=5.6e-05 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
++|+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=6.4e-05 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00068 Score=55.69 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEEEEEeCCChhhhchh---hhccccC---CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRTI---TSSYYRG---AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++|++|....... ....+.. ..-.++|+|++. ...+.++ +..+... ...-+|+||.|-..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~~-~~~g~IlTKlDet~-- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRGP-GLAGCILTKLDEAA-- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhccC-CCCEEEEeCCCCcc--
Confidence 35789999994332211 1111111 233778889874 3222222 2222222 23456789999542
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..=.+..+....++++..++ +|++|
T Consensus 406 --~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 --SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred --cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 23445666677788776664 35666
No 431
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=6.9e-05 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999853
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0014 Score=52.55 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=49.3
Q ss_pred EEEEEEeCCChhhhch----hhhccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRT----ITSSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
..+.++|++|...... ....++.. ..-.++|+|++... ..+... +..+... .+--++++|.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~---~~~~~~~-~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEI---FHQFSPF-SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHH---HHHhcCC-CCCEEEEEeccCCC--
Confidence 5688999999543221 11222222 23588999998643 222332 2333221 23467899999543
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 130 VVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..=.+..+....+.|+..++ +|+++
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22335556666777765554 35555
No 433
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=7.3e-05 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+|+|+|++|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.51 E-value=8e-05 Score=51.06 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028792 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~ 30 (203)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.0026 Score=48.56 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-----------CC----------CccccceeeEEEE----EE------ECCeEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-----------ES----------YISTIGVDFKIRT----VE------QDGKTI 57 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-----------~~----------~~~~~~~~~~~~~----~~------~~~~~~ 57 (203)
-+++++|++|+||||++..+...-.. .. +....+.++.... +. .....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999887532100 00 0000111111000 00 011135
Q ss_pred EEEEEeCCChhhhchh----hhccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 58 KLQIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.+.++|++|....... +..++ ...+-+++|+|++... .++..+...+. . -.+--++++|.|-...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~---~-~~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK---D-IHIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhC---C-CCCCEEEEEeecCCCC---
Confidence 7889999996532211 11222 2456789999986322 12223322222 2 1234678999996432
Q ss_pred CHHHHHHHHHHcCCCEEEEe
Q 028792 132 SYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~S 151 (203)
.=.+..+....+.|+..++
T Consensus 227 -~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEe
Confidence 2235555666777766654
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.49 E-value=0.0012 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3577999999999999998753
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.00013 Score=42.34 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998763
No 438
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.46 E-value=0.0032 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998754
No 439
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.45 E-value=8.3e-05 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 440
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.00064 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00011 Score=52.21 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.-+++.||+|+|||||++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999765
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.37 E-value=0.00018 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999864
No 443
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.36 E-value=7.4e-05 Score=58.79 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=49.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc--hhhhccccCCc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--TITSSYYRGAH 82 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d 82 (203)
+...+.|.++|.|++||||+||+|-....-... |..+.+-.+..+... -+|-++|+||.--.. ......+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---h
Confidence 446789999999999999999999876543221 222211222222211 357799999943111 1122222 3
Q ss_pred EEEEEEeCCChhh
Q 028792 83 GIIVVYDVTDQES 95 (203)
Q Consensus 83 ~~i~v~d~~~~~s 95 (203)
+++=|-.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5666777777764
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998643
No 445
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.34 E-value=0.0005 Score=48.89 Aligned_cols=45 Identities=29% Similarity=0.223 Sum_probs=28.4
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
|++++|+|+.++.+-. -..+.+.+. ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~-~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCR-CPQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCC-CHHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 7899999998764311 112222221 22335899999999999643
No 446
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0013 Score=48.54 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=35.0
Q ss_pred EEEEeCC-ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 59 LQIWDTA-GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 59 ~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
+.+.||- |.++ +-+.....+|.+|.|+|.+-+ ++...+.. ..+-.... -+++.+|+||.|-
T Consensus 136 ~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 136 VVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred EEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence 4455553 3332 234456889999999998743 22222221 11211111 2789999999984
No 447
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.32 E-value=0.01 Score=42.06 Aligned_cols=84 Identities=8% Similarity=0.038 Sum_probs=50.2
Q ss_pred EEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792 58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK 137 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 137 (203)
.+.++|+|+.... .....+..+|.++++++.+. .++..+..+++.+... ......+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 5889999975332 23445688999999998764 3444444555544432 12356788999985432 1222234
Q ss_pred HHHHHcCCCEE
Q 028792 138 AFADEIGIPFM 148 (203)
Q Consensus 138 ~~~~~~~~~~~ 148 (203)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666655
No 448
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.29 E-value=0.00036 Score=51.32 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=36.5
Q ss_pred EEEEEeCCChhhh----chhh--hccccCCcE---EEEEEeC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 58 KLQIWDTAGQERF----RTIT--SSYYRGAHG---IIVVYDV---TDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 58 ~~~i~D~~g~~~~----~~~~--~~~~~~~d~---~i~v~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
...++|+||+-++ ...+ ...+..-|. ++-++|. ++|..|- ..++..+.....-..|.+=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhHH
Confidence 4679999997543 1111 112233443 3334443 4565543 23333343333346788889999998
Q ss_pred CC
Q 028792 126 TA 127 (203)
Q Consensus 126 ~~ 127 (203)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 64
No 449
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00024 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|++|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999998754
No 450
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.27 E-value=0.0036 Score=44.69 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=58.3
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET 135 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 135 (203)
.+.+.++|+|+... ......+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|+.|.... ..++
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence 46789999997532 233456688999999998873 3555566665555443 4678899999986432 3456
Q ss_pred HHHHHHHcCCCEEE
Q 028792 136 AKAFADEIGIPFME 149 (203)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (203)
..++.+..+++++-
T Consensus 163 ~~~~~~~~~~~vl~ 176 (179)
T cd03110 163 IEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHcCCCeEE
Confidence 67778888877653
No 451
>PRK06217 hypothetical protein; Validated
Probab=97.25 E-value=0.00027 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00035 Score=50.87 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+||+|||||||++.+-.-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47899999999999999997755
No 453
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.23 E-value=0.00027 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 454
>PRK03839 putative kinase; Provisional
Probab=97.23 E-value=0.00027 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 455
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0016 Score=53.09 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC------------CC----CCccccceeeE--EEEEE------------ECCeEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSY------------LE----SYISTIGVDFK--IRTVE------------QDGKTIK 58 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~------------~~----~~~~~~~~~~~--~~~~~------------~~~~~~~ 58 (203)
-++-++..-.-|||||-..|....- .. +....++.... +..+. -++..+-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 4566788888999999999864211 11 11111111111 11111 1333567
Q ss_pred EEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCHHHHH
Q 028792 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA-NKVVSYETAK 137 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-~~~~~~~~~~ 137 (203)
++++|.||+-.+.+.....++-.|+.++|+|..+.--...-.-+.+.+.. .+.-++++||+|-.- +-+...+++-
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHHH
Confidence 89999999999999999999999999999998764322111222222322 223367899999431 1234444444
Q ss_pred HHH
Q 028792 138 AFA 140 (203)
Q Consensus 138 ~~~ 140 (203)
+.+
T Consensus 176 qtf 178 (842)
T KOG0469|consen 176 QTF 178 (842)
T ss_pred HHH
Confidence 433
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.22 E-value=0.0004 Score=47.51 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 457
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.20 E-value=0.00029 Score=47.36 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.20 E-value=0.0011 Score=44.30 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-|++-|+-|+|||||++.+..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 459
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.00043 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+..-|+|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999753
No 460
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.19 E-value=0.00041 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++|+|++|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999987644
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00036 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL 34 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~ 34 (203)
-.++++|++|+|||++++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999875543
No 462
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.0016 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
|+|+|++|+||||+++.|+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987643
No 463
>PRK10646 ADP-binding protein; Provisional
Probab=97.17 E-value=0.0027 Score=44.06 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 464
>PRK14530 adenylate kinase; Provisional
Probab=97.16 E-value=0.00037 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 465
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.14 E-value=0.001 Score=52.14 Aligned_cols=95 Identities=26% Similarity=0.228 Sum_probs=59.6
Q ss_pred eCCChh-hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 028792 63 DTAGQE-RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFAD 141 (203)
Q Consensus 63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 141 (203)
+.||+. .+.......+..+|+++.|+|+.+|.+- .-..+..+.. +.|.++|+||.|+.+... ..+=...+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s-----~~~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGT-----RNPELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccc-----cCccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence 446643 4455566778999999999999988751 1112222222 355599999999976533 1222233333
Q ss_pred HcCCCEEEEecCCCCCHHHHHHH
Q 028792 142 EIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 142 ~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
..+...+.+++..+.+...+...
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~ 111 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKA 111 (322)
T ss_pred cCCCccEEEEeecccCccchHHH
Confidence 43677888888887776666643
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.13 E-value=0.00039 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999764
No 467
>PRK04195 replication factor C large subunit; Provisional
Probab=97.12 E-value=0.011 Score=49.01 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-.++|.|+||+||||+++.|...-
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.12 E-value=0.00044 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.|.|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 469
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.11 E-value=0.002 Score=44.18 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-|++-|+-|+|||||.+.+...-
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHc
Confidence 47889999999999999998533
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.11 E-value=0.00042 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 471
>PRK01889 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.00057 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|.+|+|||||++.|.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 68999999999999999998644
No 472
>PRK14531 adenylate kinase; Provisional
Probab=97.10 E-value=0.00044 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+|+++|+|||||||+.+.|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 473
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00036 Score=47.72 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
....+|+|.|.||+|||||..+|..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999974
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.09 E-value=0.00062 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
+..-+.|+|++|||||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446899999999999999999864
No 475
>PRK14532 adenylate kinase; Provisional
Probab=97.09 E-value=0.00046 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+++|+|||||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 476
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00045 Score=51.78 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999987
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.08 E-value=0.00045 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (203)
.-|+|+|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999997
No 478
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.07 E-value=0.00027 Score=60.18 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=46.4
Q ss_pred EEEEEEeCCChh-------------hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028792 57 IKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 123 (203)
Q Consensus 57 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 123 (203)
..++++|+||.. +...+...++...+.+|+.+...+-+- ....++.........+..++.|++|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~--ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI--ATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh--hcCHHHHHHHhhCCCccchhHHhhhH
Confidence 357899999932 345567778888899999888765221 11234444555555667788888888
Q ss_pred CCCCC
Q 028792 124 DLTAN 128 (203)
Q Consensus 124 D~~~~ 128 (203)
|+.+.
T Consensus 210 Dlmdk 214 (657)
T KOG0446|consen 210 DFMDK 214 (657)
T ss_pred Hhhhc
Confidence 87654
No 479
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.07 E-value=0.00051 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..++++|+|++|||||+|+..|+..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999999853
No 480
>PRK13949 shikimate kinase; Provisional
Probab=97.06 E-value=0.00054 Score=48.59 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
+|+|+|++|+||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.06 E-value=0.00054 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.++|+|++|+|||||++.|.+-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.05 E-value=0.00052 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 483
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.05 E-value=0.00054 Score=44.51 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028792 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~ 29 (203)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999976
No 484
>PRK00625 shikimate kinase; Provisional
Probab=97.05 E-value=0.00054 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+++|.|||||||+.+.|..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 485
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.05 E-value=0.0049 Score=47.39 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=62.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh---h-----------
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---R----------- 69 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---~----------- 69 (203)
+..+-..++++|++|-|||++++++.....+.. .... ..+.+...+.|... +
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 445667899999999999999999986543221 1111 01233344444311 1
Q ss_pred ----------hchhhhccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 028792 70 ----------FRTITSSYYRGAHGIIVVYDVTDQ---ESFNNVKQWLNEIDRYAS-ENVNKLLVGNKC 123 (203)
Q Consensus 70 ----------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~ 123 (203)
........+.....=++++|--.. -+...-+..++.++...+ -.+|+|.+++.-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111223456777888888984321 133344556666666655 478999888653
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.04 E-value=0.013 Score=40.28 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999998754
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.03 E-value=0.0007 Score=49.65 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.-.-|+|+|++|||||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999753
No 488
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.00054 Score=51.58 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028792 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~ 30 (203)
++++|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999976
No 489
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00056 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (203)
++|+|.|.||+||||+.++|-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.00064 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++++|+.|+|||||++.++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999998863
No 491
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.01 E-value=0.00066 Score=46.36 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998874
No 492
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00079 Score=50.05 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
|.++|++|+|||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997643
No 493
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.00039 Score=51.83 Aligned_cols=87 Identities=17% Similarity=0.324 Sum_probs=54.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccC----
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRG---- 80 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~---- 80 (203)
..+..|++.|..+ +|++|++.+.+...+. .++...+|....-...+ ..-..++|+.+|......+..--+..
T Consensus 43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 4567888888754 5999998887654433 35555555554433333 22335799999976654443332222
Q ss_pred CcEEEEEEeCCChhh
Q 028792 81 AHGIIVVYDVTDQES 95 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s 95 (203)
.-.+|++.|.+.++.
T Consensus 120 ~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 120 TFSLILVLDLSKPND 134 (363)
T ss_pred hhhheeeeecCChHH
Confidence 337899999998763
No 494
>PRK02496 adk adenylate kinase; Provisional
Probab=96.98 E-value=0.00071 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 495
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0023 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~ 29 (203)
+.--|.++|-.|+||||.+-.|.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHH
Confidence 34568899999999999988874
No 496
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.97 E-value=0.0077 Score=49.74 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-+++.||+|+||||.++.|..
T Consensus 112 iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHH
Confidence 367899999999999999874
No 497
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.96 E-value=0.00069 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|+|+|||||||+.+.|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999864
No 498
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.0013 Score=50.90 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=75.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC----CCCCC-----------------CccccceeeEEEE-------EEE-----
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD----SYLES-----------------YISTIGVDFKIRT-------VEQ----- 52 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~~~-----------------~~~~~~~~~~~~~-------~~~----- 52 (203)
.+.+-|+++|-.|+||||.|-+|... ..... .....+.++.... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45788999999999999999887531 10000 0000011111100 000
Q ss_pred -CCeEEEEEEEeCCChhhhch-------hhhccccC-----CcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEE
Q 028792 53 -DGKTIKLQIWDTAGQERFRT-------ITSSYYRG-----AHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLL 118 (203)
Q Consensus 53 -~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~-----~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ii 118 (203)
....+.+.++||.|.-+... .....+.. .+=+++++|++- .+++...+.+-+.+ . ---+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav----~---l~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV----G---LDGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc----C---CceE
Confidence 11235688999999432111 11222333 334888889875 44555555533322 1 2256
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 119 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+++|.|-...--. +...+..+++|+..+-. |++++++-
T Consensus 290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDLR 327 (340)
T ss_pred EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhcc
Confidence 7899995432221 33455677888766643 56666654
No 499
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.94 E-value=0.00066 Score=49.38 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|.|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999763
No 500
>PRK08233 hypothetical protein; Provisional
Probab=96.94 E-value=0.00085 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999753
Done!