Query 028792
Match_columns 203
No_of_seqs 148 out of 1912
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.9E-44 2E-48 262.1 18.2 197 6-202 11-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8.2E-40 2.8E-44 238.8 22.9 176 1-176 1-176 (206)
3 1vg8_A RAS-related protein RAB 100.0 3.3E-38 1.1E-42 230.2 18.4 201 1-202 1-207 (207)
4 2fu5_C RAS-related protein RAB 100.0 1.7E-36 5.9E-41 217.0 18.6 175 1-175 1-175 (183)
5 3tkl_A RAS-related protein RAB 100.0 2E-35 6.7E-40 213.7 23.7 176 2-177 10-185 (196)
6 3cpj_B GTP-binding protein YPT 100.0 3.4E-36 1.2E-40 222.3 19.2 171 5-175 10-180 (223)
7 2bme_A RAB4A, RAS-related prot 100.0 1.6E-35 5.6E-40 212.4 22.0 177 1-177 3-179 (186)
8 2bov_A RAla, RAS-related prote 100.0 1.3E-35 4.5E-40 216.2 20.6 173 4-177 10-183 (206)
9 3tw8_B RAS-related protein RAB 100.0 3.9E-35 1.3E-39 209.3 22.3 175 1-176 2-176 (181)
10 2ew1_A RAS-related protein RAB 100.0 3.1E-35 1E-39 214.0 21.9 172 4-175 22-193 (201)
11 2hup_A RAS-related protein RAB 100.0 3.9E-35 1.3E-39 213.4 20.5 171 4-174 25-196 (201)
12 2a5j_A RAS-related protein RAB 100.0 7.4E-35 2.5E-39 210.2 21.5 172 3-174 16-187 (191)
13 2gf9_A RAS-related protein RAB 100.0 1.4E-34 4.9E-39 208.3 22.7 170 4-173 18-187 (189)
14 2g6b_A RAS-related protein RAB 100.0 1.7E-34 5.9E-39 205.9 22.3 171 4-174 6-177 (180)
15 1zbd_A Rabphilin-3A; G protein 100.0 2.4E-34 8.1E-39 209.3 23.4 173 3-175 3-175 (203)
16 1z08_A RAS-related protein RAB 100.0 5.2E-35 1.8E-39 206.7 19.0 168 4-171 2-169 (170)
17 1z0f_A RAB14, member RAS oncog 100.0 1.1E-34 3.7E-39 206.6 20.6 169 3-171 10-178 (179)
18 2oil_A CATX-8, RAS-related pro 100.0 1.5E-34 5.1E-39 208.8 21.2 172 3-174 20-191 (193)
19 2o52_A RAS-related protein RAB 100.0 9.6E-35 3.3E-39 211.1 19.7 174 4-177 21-194 (200)
20 2fn4_A P23, RAS-related protei 100.0 2E-34 6.7E-39 205.6 20.9 174 1-175 2-176 (181)
21 3dz8_A RAS-related protein RAB 100.0 1.4E-35 4.9E-40 213.9 15.1 172 3-174 18-189 (191)
22 2efe_B Small GTP-binding prote 100.0 2.4E-34 8.4E-39 205.3 21.2 168 4-171 8-175 (181)
23 1g16_A RAS-related protein SEC 100.0 2E-34 6.8E-39 203.6 20.1 166 6-172 1-166 (170)
24 3kkq_A RAS-related protein M-R 100.0 4.5E-34 1.5E-38 204.5 22.0 168 3-171 13-182 (183)
25 3bc1_A RAS-related protein RAB 100.0 4.5E-34 1.5E-38 205.9 21.6 172 4-175 7-189 (195)
26 4dsu_A GTPase KRAS, isoform 2B 100.0 4E-34 1.4E-38 205.5 21.2 170 6-177 2-172 (189)
27 3t5g_A GTP-binding protein RHE 100.0 4.8E-34 1.6E-38 204.0 21.2 168 6-174 4-172 (181)
28 2il1_A RAB12; G-protein, GDP, 100.0 1.7E-34 6E-39 208.4 18.9 170 3-172 21-191 (192)
29 1z0j_A RAB-22, RAS-related pro 100.0 6.6E-34 2.2E-38 200.9 21.5 166 4-169 2-167 (170)
30 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-34 5.1E-39 208.8 18.4 169 2-170 17-185 (192)
31 1r2q_A RAS-related protein RAB 100.0 3.8E-34 1.3E-38 202.1 19.9 165 5-169 3-167 (170)
32 2j0v_A RAC-like GTP-binding pr 100.0 1.3E-34 4.4E-39 212.1 17.1 169 6-176 7-185 (212)
33 1ky3_A GTP-binding protein YPT 100.0 5.7E-34 2E-38 203.4 19.4 174 1-174 1-181 (182)
34 1x3s_A RAS-related protein RAB 100.0 1.4E-33 4.7E-38 203.7 21.6 173 1-174 8-181 (195)
35 1z2a_A RAS-related protein RAB 100.0 4E-34 1.4E-38 201.7 18.3 165 6-171 3-167 (168)
36 1ek0_A Protein (GTP-binding pr 100.0 7.7E-34 2.6E-38 200.5 19.5 163 7-169 2-167 (170)
37 2gf0_A GTP-binding protein DI- 100.0 2.8E-34 9.5E-39 208.1 17.7 167 6-174 6-174 (199)
38 3cbq_A GTP-binding protein REM 100.0 6.2E-34 2.1E-38 206.1 19.3 171 4-174 19-191 (195)
39 2nzj_A GTP-binding protein REM 100.0 2.5E-33 8.6E-38 198.9 21.5 169 6-175 2-173 (175)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.5E-33 1.2E-37 198.6 22.2 167 4-171 3-174 (177)
41 2hxs_A RAB-26, RAS-related pro 100.0 2.8E-34 9.6E-39 204.5 16.5 168 5-172 3-174 (178)
42 3cph_A RAS-related protein SEC 100.0 3.6E-33 1.2E-37 204.3 22.3 173 4-177 16-188 (213)
43 2f7s_A C25KG, RAS-related prot 100.0 5.3E-34 1.8E-38 209.5 17.9 173 3-175 20-203 (217)
44 3q85_A GTP-binding protein REM 100.0 1.2E-33 4.2E-38 199.6 18.9 165 8-172 2-168 (169)
45 2y8e_A RAB-protein 6, GH09086P 100.0 9.1E-34 3.1E-38 201.8 18.3 165 6-170 12-176 (179)
46 4djt_A GTP-binding nuclear pro 100.0 8.3E-34 2.8E-38 208.6 18.0 184 4-187 7-191 (218)
47 1z06_A RAS-related protein RAB 100.0 2E-33 6.9E-38 202.2 19.7 166 5-170 17-187 (189)
48 2p5s_A RAS and EF-hand domain 100.0 7.1E-34 2.4E-38 206.3 17.0 168 4-171 24-197 (199)
49 3reg_A RHO-like small GTPase; 100.0 6.1E-33 2.1E-37 200.5 21.6 168 4-173 19-190 (194)
50 3clv_A RAB5 protein, putative; 100.0 1E-32 3.4E-37 200.4 22.3 165 6-173 5-206 (208)
51 3ihw_A Centg3; RAS, centaurin, 100.0 9E-33 3.1E-37 198.3 21.2 164 4-174 16-183 (184)
52 3q72_A GTP-binding protein RAD 100.0 7.2E-33 2.5E-37 195.0 20.1 163 8-172 2-165 (166)
53 3oes_A GTPase rhebl1; small GT 100.0 1.8E-33 6.1E-38 204.5 17.4 169 5-174 21-190 (201)
54 3c5c_A RAS-like protein 12; GD 100.0 2.9E-33 9.9E-38 201.3 18.1 164 5-170 18-185 (187)
55 3q3j_B RHO-related GTP-binding 100.0 3.1E-33 1.1E-37 205.2 18.5 170 4-175 23-207 (214)
56 2a9k_A RAS-related protein RAL 100.0 9.5E-33 3.3E-37 197.8 20.1 169 5-174 15-184 (187)
57 1u8z_A RAS-related protein RAL 100.0 9E-33 3.1E-37 194.5 19.1 164 7-171 3-167 (168)
58 1c1y_A RAS-related protein RAP 100.0 5.9E-33 2E-37 195.5 18.1 163 7-170 2-166 (167)
59 1kao_A RAP2A; GTP-binding prot 100.0 8.6E-33 2.9E-37 194.4 18.3 164 7-171 2-166 (167)
60 2atx_A Small GTP binding prote 100.0 3.3E-32 1.1E-36 196.6 21.8 165 4-170 14-192 (194)
61 2q3h_A RAS homolog gene family 100.0 2E-32 7E-37 198.7 20.6 170 4-175 16-199 (201)
62 1gwn_A RHO-related GTP-binding 100.0 7.5E-33 2.6E-37 201.9 18.3 169 1-171 21-204 (205)
63 2g3y_A GTP-binding protein GEM 100.0 2.4E-32 8.1E-37 199.8 20.8 169 4-173 33-205 (211)
64 3l0i_B RAS-related protein RAB 100.0 2.1E-35 7.3E-40 214.3 4.5 170 2-171 27-196 (199)
65 2yc2_C IFT27, small RAB-relate 100.0 2.6E-33 9E-38 204.1 15.5 168 6-173 18-194 (208)
66 2iwr_A Centaurin gamma 1; ANK 100.0 3.1E-32 1E-36 194.1 19.7 163 6-175 5-173 (178)
67 2atv_A RERG, RAS-like estrogen 100.0 2.5E-32 8.6E-37 197.6 19.1 166 6-173 26-193 (196)
68 3con_A GTPase NRAS; structural 100.0 1.4E-31 4.9E-36 192.6 22.9 169 4-174 17-186 (190)
69 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-32 7.2E-37 196.2 18.1 166 4-171 3-183 (184)
70 1mh1_A RAC1; GTP-binding, GTPa 100.0 6.5E-32 2.2E-36 193.4 19.0 163 6-170 3-179 (186)
71 2j1l_A RHO-related GTP-binding 100.0 6.8E-32 2.3E-36 198.0 19.3 167 6-174 32-212 (214)
72 2gco_A H9, RHO-related GTP-bin 100.0 2.1E-31 7E-36 193.6 21.4 163 6-170 23-199 (201)
73 2ce2_X GTPase HRAS; signaling 100.0 3.6E-31 1.2E-35 185.8 21.2 162 8-171 3-165 (166)
74 2erx_A GTP-binding protein DI- 100.0 3.1E-32 1.1E-36 192.6 15.7 163 7-170 2-166 (172)
75 2fv8_A H6, RHO-related GTP-bin 100.0 2.6E-31 8.9E-36 194.0 20.3 165 6-172 23-201 (207)
76 3t1o_A Gliding protein MGLA; G 100.0 5.7E-32 2E-36 195.4 15.6 168 4-175 10-196 (198)
77 4bas_A ADP-ribosylation factor 100.0 2.2E-31 7.5E-36 192.8 17.7 165 4-174 13-192 (199)
78 2cjw_A GTP-binding protein GEM 100.0 8.3E-31 2.8E-35 189.2 20.6 167 6-173 4-174 (192)
79 3gj0_A GTP-binding nuclear pro 100.0 4.4E-32 1.5E-36 199.9 13.9 169 4-175 11-179 (221)
80 3bwd_D RAC-like GTP-binding pr 100.0 4.7E-32 1.6E-36 193.6 13.1 163 6-170 6-180 (182)
81 4gzl_A RAS-related C3 botulinu 100.0 4.2E-31 1.4E-35 192.5 18.0 162 6-169 28-203 (204)
82 2f9l_A RAB11B, member RAS onco 100.0 2.8E-30 9.5E-35 187.4 22.1 172 6-177 3-174 (199)
83 2h57_A ADP-ribosylation factor 100.0 4.3E-30 1.5E-34 185.0 18.2 161 5-171 18-187 (190)
84 1r8s_A ADP-ribosylation factor 100.0 4.7E-31 1.6E-35 185.4 12.0 156 9-171 1-162 (164)
85 1ksh_A ARF-like protein 2; sma 100.0 1.2E-29 4.2E-34 181.8 19.4 160 6-172 16-181 (186)
86 1upt_A ARL1, ADP-ribosylation 100.0 3.9E-30 1.3E-34 181.8 16.3 159 6-171 5-169 (171)
87 1zd9_A ADP-ribosylation factor 100.0 1.1E-30 3.8E-35 187.8 13.1 160 6-171 20-185 (188)
88 1f6b_A SAR1; gtpases, N-termin 100.0 5.3E-30 1.8E-34 185.8 16.0 156 6-168 23-196 (198)
89 1oix_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 180.7 20.1 166 4-169 25-190 (191)
90 1m2o_B GTP-binding protein SAR 100.0 1.1E-29 3.9E-34 182.9 17.3 156 6-168 21-189 (190)
91 2b6h_A ADP-ribosylation factor 100.0 1.4E-30 4.8E-35 188.0 11.7 158 6-170 27-190 (192)
92 1zj6_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 182.3 16.2 159 6-171 14-178 (187)
93 2h17_A ADP-ribosylation factor 100.0 8.5E-30 2.9E-34 182.1 14.9 158 4-168 17-180 (181)
94 1fzq_A ADP-ribosylation factor 100.0 2.3E-29 7.9E-34 179.9 17.1 160 6-172 14-179 (181)
95 2x77_A ADP-ribosylation factor 100.0 3.5E-30 1.2E-34 185.2 12.3 160 6-172 20-185 (189)
96 1moz_A ARL1, ADP-ribosylation 100.0 4.9E-29 1.7E-33 178.1 16.6 160 6-172 16-181 (183)
97 2wkq_A NPH1-1, RAS-related C3 100.0 1.1E-28 3.8E-33 191.8 19.4 164 6-171 153-330 (332)
98 2zej_A Dardarin, leucine-rich 100.0 1E-29 3.4E-34 182.3 10.4 164 8-172 2-179 (184)
99 3llu_A RAS-related GTP-binding 100.0 2.9E-29 1E-33 181.6 12.7 161 4-169 16-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 1.2E-31 4E-36 195.3 0.0 162 6-169 28-203 (204)
101 2lkc_A Translation initiation 100.0 1.7E-28 5.9E-33 174.4 16.2 161 5-174 5-174 (178)
102 2qu8_A Putative nucleolar GTP- 100.0 3.3E-28 1.1E-32 180.0 17.7 167 5-174 26-208 (228)
103 3c5h_A Glucocorticoid receptor 100.0 4.1E-29 1.4E-33 187.9 9.2 165 4-170 15-254 (255)
104 2wji_A Ferrous iron transport 100.0 4.7E-28 1.6E-32 170.6 13.4 153 8-169 3-163 (165)
105 2fh5_B SR-beta, signal recogni 100.0 3.4E-27 1.2E-31 172.8 15.8 161 5-168 4-213 (214)
106 3lvq_E ARF-GAP with SH3 domain 100.0 8.6E-28 2.9E-32 196.5 12.9 166 6-178 320-491 (497)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 4.3E-27 1.5E-31 181.3 15.3 159 7-169 2-179 (307)
108 3o47_A ADP-ribosylation factor 99.9 6.2E-28 2.1E-32 187.5 10.7 158 7-171 164-327 (329)
109 2cxx_A Probable GTP-binding pr 99.9 1.9E-27 6.5E-32 170.7 12.1 158 9-175 2-188 (190)
110 1svi_A GTP-binding protein YSX 99.9 5E-27 1.7E-31 169.3 12.2 159 5-170 20-194 (195)
111 2wjg_A FEOB, ferrous iron tran 99.9 3.7E-27 1.3E-31 169.1 11.4 160 5-173 4-171 (188)
112 3a1s_A Iron(II) transport prot 99.9 1.8E-26 6.2E-31 173.5 13.7 156 6-170 3-166 (258)
113 2dyk_A GTP-binding protein; GT 99.9 1.7E-26 5.8E-31 161.4 12.2 150 9-169 2-160 (161)
114 2gj8_A MNME, tRNA modification 99.9 5.5E-27 1.9E-31 166.3 8.7 154 7-170 3-165 (172)
115 3iev_A GTP-binding protein ERA 99.9 2.9E-25 1E-29 171.0 18.0 163 4-171 6-182 (308)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 8.6E-27 2.9E-31 178.6 7.5 154 10-170 1-173 (331)
117 3dpu_A RAB family protein; roc 99.9 1.2E-26 4.2E-31 191.1 8.9 164 5-172 38-209 (535)
118 3iby_A Ferrous iron transport 99.9 1.7E-26 5.7E-31 173.5 8.8 151 9-168 2-164 (256)
119 3pqc_A Probable GTP-binding pr 99.9 1.6E-25 5.4E-30 161.2 12.5 157 4-170 19-193 (195)
120 3b1v_A Ferrous iron uptake tra 99.9 3.7E-26 1.3E-30 172.8 9.5 153 7-169 2-162 (272)
121 3k53_A Ferrous iron transport 99.9 1.6E-25 5.6E-30 169.7 11.9 158 7-172 2-167 (271)
122 3i8s_A Ferrous iron transport 99.9 5.9E-26 2E-30 172.2 8.2 155 7-170 2-168 (274)
123 4dhe_A Probable GTP-binding pr 99.9 4.3E-25 1.5E-29 162.5 12.1 164 5-172 26-212 (223)
124 2e87_A Hypothetical protein PH 99.9 9.6E-24 3.3E-28 165.8 18.6 162 6-172 165-337 (357)
125 2hjg_A GTP-binding protein ENG 99.9 1.3E-24 4.3E-29 175.0 13.0 165 6-176 173-354 (436)
126 3gee_A MNME, tRNA modification 99.9 2.4E-24 8.2E-29 174.2 14.5 156 8-170 233-397 (476)
127 1nrj_B SR-beta, signal recogni 99.9 1.8E-25 6E-30 164.1 6.3 145 4-157 8-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 3.6E-24 1.2E-28 173.2 13.4 167 5-177 192-375 (456)
129 1wf3_A GTP-binding protein; GT 99.9 1.1E-23 3.6E-28 161.6 14.4 156 6-170 5-172 (301)
130 1mky_A Probable GTP-binding pr 99.9 1.2E-23 4E-28 169.5 14.6 178 9-198 2-194 (439)
131 1lnz_A SPO0B-associated GTP-bi 99.9 2.9E-24 9.8E-29 167.1 9.1 158 9-171 159-330 (342)
132 1xzp_A Probable tRNA modificat 99.9 2.1E-23 7.2E-28 168.8 13.4 152 9-171 244-405 (482)
133 3qq5_A Small GTP-binding prote 99.9 2.6E-24 9E-29 171.4 6.7 160 4-172 30-197 (423)
134 3lxx_A GTPase IMAP family memb 99.9 4.6E-22 1.6E-26 148.0 15.1 164 5-172 26-215 (239)
135 1wb1_A Translation elongation 99.9 2.6E-22 9E-27 162.9 14.2 156 6-170 17-188 (482)
136 3geh_A MNME, tRNA modification 99.9 5.7E-23 1.9E-27 165.6 9.6 152 8-171 224-384 (462)
137 2qtf_A Protein HFLX, GTP-bindi 99.9 1.7E-21 5.7E-26 152.9 17.3 159 10-171 181-354 (364)
138 2xtp_A GTPase IMAP family memb 99.9 3.9E-22 1.4E-26 150.1 12.9 163 5-172 19-209 (260)
139 1s0u_A EIF-2-gamma, translatio 99.9 1.6E-21 5.4E-26 155.7 16.9 158 6-169 6-196 (408)
140 2hjg_A GTP-binding protein ENG 99.9 2.3E-23 7.9E-28 167.6 5.8 177 8-198 3-189 (436)
141 3sjy_A Translation initiation 99.9 2.7E-21 9.4E-26 154.1 17.3 164 4-170 4-191 (403)
142 1cip_A Protein (guanine nucleo 99.9 4.8E-22 1.7E-26 155.1 12.6 125 47-173 185-346 (353)
143 1mky_A Probable GTP-binding pr 99.9 1.4E-21 4.9E-26 157.3 15.6 165 6-176 178-360 (439)
144 3t5d_A Septin-7; GTP-binding p 99.9 1.1E-22 3.9E-27 154.2 8.7 161 5-169 5-202 (274)
145 3cb4_D GTP-binding protein LEP 99.9 9.9E-22 3.4E-26 162.5 14.9 158 7-170 3-181 (599)
146 1kk1_A EIF2gamma; initiation o 99.9 1.7E-21 5.7E-26 155.7 15.5 160 5-170 7-199 (410)
147 3j2k_7 ERF3, eukaryotic polype 99.9 9.3E-22 3.2E-26 158.1 14.0 157 5-163 14-217 (439)
148 2ywe_A GTP-binding protein LEP 99.9 2E-21 7E-26 160.4 16.0 160 5-170 3-183 (600)
149 1ega_A Protein (GTP-binding pr 99.9 2.9E-21 9.7E-26 148.3 15.0 158 6-170 6-174 (301)
150 3izy_P Translation initiation 99.9 6.6E-24 2.3E-28 173.1 -0.7 160 6-170 2-167 (537)
151 3lxw_A GTPase IMAP family memb 99.9 8.5E-21 2.9E-25 141.8 15.3 166 5-172 18-209 (247)
152 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.6E-27 163.1 6.6 182 4-198 19-209 (456)
153 3p26_A Elongation factor 1 alp 99.9 1.3E-21 4.3E-26 159.3 10.9 151 7-161 32-228 (483)
154 3ohm_A Guanine nucleotide-bind 99.9 5.9E-21 2E-25 147.0 13.4 127 45-173 157-320 (327)
155 2qag_A Septin-2, protein NEDD5 99.9 2.4E-22 8.2E-27 157.8 5.3 162 6-173 35-235 (361)
156 3tr5_A RF-3, peptide chain rel 99.9 4.9E-21 1.7E-25 156.7 12.2 117 6-128 11-149 (528)
157 2ged_A SR-beta, signal recogni 99.9 1.5E-21 5.1E-26 140.4 8.2 116 5-129 45-172 (193)
158 2xtz_A Guanine nucleotide-bind 99.9 5.5E-21 1.9E-25 149.1 11.8 119 55-173 181-347 (354)
159 2elf_A Protein translation elo 99.8 4.8E-21 1.6E-25 150.7 10.9 147 10-172 23-181 (370)
160 1g7s_A Translation initiation 99.8 1.6E-20 5.5E-25 155.4 14.1 161 6-173 3-220 (594)
161 1zun_B Sulfate adenylate trans 99.8 7.7E-21 2.6E-25 152.8 10.9 155 5-164 21-217 (434)
162 1jny_A EF-1-alpha, elongation 99.8 9.7E-22 3.3E-26 158.0 5.3 154 7-163 5-205 (435)
163 3izq_1 HBS1P, elongation facto 99.8 5E-21 1.7E-25 159.2 9.4 154 7-162 166-363 (611)
164 2c78_A Elongation factor TU-A; 99.8 7.5E-21 2.6E-25 151.7 9.6 149 5-157 8-180 (405)
165 1r5b_A Eukaryotic peptide chai 99.8 1.6E-21 5.4E-26 158.0 5.6 155 6-162 41-243 (467)
166 1d2e_A Elongation factor TU (E 99.8 2.7E-20 9.3E-25 148.0 12.7 158 8-169 3-193 (397)
167 1zo1_I IF2, translation initia 99.8 9.1E-23 3.1E-27 165.2 -1.7 153 6-167 2-163 (501)
168 4fid_A G protein alpha subunit 99.8 6.8E-20 2.3E-24 141.6 12.1 123 47-171 153-328 (340)
169 1f60_A Elongation factor EEF1A 99.8 6E-21 2.1E-25 154.2 6.3 151 6-161 5-202 (458)
170 1pui_A ENGB, probable GTP-bind 99.8 1.2E-19 4.2E-24 132.1 11.0 157 7-170 25-198 (210)
171 2aka_B Dynamin-1; fusion prote 99.8 2.3E-20 8E-25 143.0 7.5 161 5-169 23-251 (299)
172 3avx_A Elongation factor TS, e 99.8 3.5E-19 1.2E-23 154.4 13.2 160 5-168 293-483 (1289)
173 1udx_A The GTP-binding protein 99.8 6.5E-19 2.2E-23 140.0 13.1 161 10-174 159-328 (416)
174 3def_A T7I23.11 protein; chlor 99.8 1.8E-18 6.2E-23 130.3 13.9 124 6-132 34-170 (262)
175 3mca_A HBS1, elongation factor 99.8 4.7E-21 1.6E-25 158.9 -0.3 149 6-159 175-371 (592)
176 2j69_A Bacterial dynamin-like 99.8 1.5E-18 5.1E-23 146.4 14.5 163 7-172 68-326 (695)
177 3t34_A Dynamin-related protein 99.8 1.5E-19 5E-24 142.2 7.3 161 7-169 33-259 (360)
178 1dar_A EF-G, elongation factor 99.8 3.2E-18 1.1E-22 144.4 15.7 121 2-128 6-144 (691)
179 2h5e_A Peptide chain release f 99.8 5.8E-18 2E-22 138.7 16.7 117 6-128 11-149 (529)
180 2dy1_A Elongation factor G; tr 99.8 1.5E-18 5.3E-23 145.8 12.7 116 5-126 6-139 (665)
181 2qnr_A Septin-2, protein NEDD5 99.8 2E-19 6.9E-24 137.9 4.6 163 5-172 15-215 (301)
182 1jwy_B Dynamin A GTPase domain 99.8 3.2E-18 1.1E-22 132.1 11.0 112 57-171 131-262 (315)
183 1wxq_A GTP-binding protein; st 99.8 9.8E-19 3.4E-23 138.6 7.9 85 9-93 1-114 (397)
184 1h65_A Chloroplast outer envel 99.8 2E-17 6.9E-22 125.1 14.0 126 6-134 37-175 (270)
185 1zcb_A G alpha I/13; GTP-bindi 99.8 5.7E-18 2E-22 132.5 11.2 128 45-174 191-356 (362)
186 2qag_C Septin-7; cell cycle, c 99.7 5E-18 1.7E-22 135.0 8.8 159 6-168 29-224 (418)
187 2xex_A Elongation factor G; GT 99.7 6.2E-17 2.1E-21 136.6 15.8 118 5-128 7-142 (693)
188 1u0l_A Probable GTPase ENGC; p 99.7 2.5E-18 8.6E-23 131.9 6.5 133 23-166 32-168 (301)
189 1azs_C GS-alpha; complex (lyas 99.7 3.2E-17 1.1E-21 129.4 12.0 125 47-173 209-387 (402)
190 2rdo_7 EF-G, elongation factor 99.7 1.7E-16 5.9E-21 134.0 16.8 120 4-127 6-148 (704)
191 2wsm_A Hydrogenase expression/ 99.7 1.3E-17 4.6E-22 122.3 6.5 156 7-173 29-216 (221)
192 1jal_A YCHF protein; nucleotid 99.7 5.8E-16 2E-20 120.7 14.5 147 8-154 2-240 (363)
193 3vqt_A RF-3, peptide chain rel 99.7 1.1E-15 3.7E-20 125.7 14.7 117 6-128 29-167 (548)
194 2x2e_A Dynamin-1; nitration, h 99.7 1.2E-17 4.2E-22 130.9 2.1 159 6-167 29-254 (353)
195 3p32_A Probable GTPase RV1496/ 99.7 7E-17 2.4E-21 126.6 6.1 103 57-171 172-284 (355)
196 2hf9_A Probable hydrogenase ni 99.7 1.4E-18 4.8E-23 127.9 -3.5 155 7-172 37-225 (226)
197 4a9a_A Ribosome-interacting GT 99.6 8.7E-15 3E-19 114.7 15.4 153 7-163 71-240 (376)
198 2qpt_A EH domain-containing pr 99.6 6.1E-16 2.1E-20 127.3 6.9 122 4-128 61-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 1.8E-15 6E-20 118.6 9.1 155 9-163 2-254 (368)
200 1n0u_A EF-2, elongation factor 99.6 2.9E-15 9.9E-20 128.8 9.6 118 5-126 16-163 (842)
201 2www_A Methylmalonic aciduria 99.6 6.2E-16 2.1E-20 120.8 4.8 103 57-171 167-279 (349)
202 1yrb_A ATP(GTP)binding protein 99.6 2.7E-14 9.1E-19 107.3 10.8 112 57-171 109-257 (262)
203 2p67_A LAO/AO transport system 99.6 4.2E-15 1.4E-19 115.9 6.3 104 57-171 149-261 (341)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 1.1E-14 3.9E-19 122.7 7.9 159 6-168 49-275 (772)
205 3j25_A Tetracycline resistance 99.5 5.2E-15 1.8E-19 123.9 4.5 114 8-127 2-133 (638)
206 4fn5_A EF-G 1, elongation fact 99.5 6.9E-13 2.3E-17 112.5 15.9 118 6-127 11-151 (709)
207 2qm8_A GTPase/ATPase; G protei 99.5 4E-13 1.4E-17 104.5 10.6 103 57-170 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 4.9E-13 1.7E-17 102.5 9.1 96 67-165 66-163 (302)
209 3l82_B F-box only protein 4; T 99.4 7E-14 2.4E-18 99.9 4.1 105 64-171 109-223 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.1E-11 3.7E-16 97.8 15.0 87 6-92 18-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 5.2E-13 1.8E-17 105.1 6.3 89 6-94 20-130 (396)
212 3l2o_B F-box only protein 4; s 99.3 1.6E-12 5.4E-17 97.3 6.4 107 64-172 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 1.1E-10 3.7E-15 91.8 3.1 140 9-158 163-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 8.7E-10 3E-14 87.6 7.8 141 7-152 41-217 (427)
215 3sop_A Neuronal-specific septi 99.0 9.5E-10 3.2E-14 82.8 7.5 136 8-150 2-179 (270)
216 3h2y_A GTPase family protein; 99.0 2.5E-11 8.4E-16 95.4 -1.7 136 9-152 161-311 (368)
217 3h2y_A GTPase family protein; 99.0 1.3E-09 4.6E-14 85.5 7.4 96 66-168 55-157 (368)
218 2j37_W Signal recognition part 98.9 1.2E-09 4E-14 88.8 6.3 149 7-168 100-310 (504)
219 1puj_A YLQF, conserved hypothe 98.9 5.1E-10 1.7E-14 84.8 3.7 102 61-172 3-107 (282)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 1.4E-09 4.7E-14 85.5 4.6 97 66-169 57-160 (369)
221 1tq4_A IIGP1, interferon-induc 98.8 2.7E-08 9.4E-13 79.0 10.6 155 8-171 69-253 (413)
222 1puj_A YLQF, conserved hypothe 98.6 6.5E-08 2.2E-12 73.2 5.0 58 6-68 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 3.6E-08 1.2E-12 73.9 3.3 56 9-68 100-155 (262)
224 3dm5_A SRP54, signal recogniti 98.5 1.9E-07 6.4E-12 74.6 7.3 91 57-159 183-279 (443)
225 2v3c_C SRP54, signal recogniti 98.4 6.3E-07 2.2E-11 71.7 7.7 84 57-151 181-272 (432)
226 1f5n_A Interferon-induced guan 98.4 3.1E-07 1.1E-11 76.0 5.3 65 5-69 35-103 (592)
227 3cnl_A YLQF, putative uncharac 98.4 1.9E-07 6.4E-12 70.0 3.1 93 64-167 4-97 (262)
228 1t9h_A YLOQ, probable GTPase E 98.3 1.5E-07 5E-12 71.9 2.3 91 71-164 77-170 (307)
229 3kl4_A SRP54, signal recogniti 98.3 1.7E-07 6E-12 74.7 2.4 91 57-159 180-278 (433)
230 3szr_A Interferon-induced GTP- 98.2 3.1E-06 1.1E-10 70.6 8.1 26 9-34 46-71 (608)
231 1j8m_F SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 63.7 7.6 91 57-160 181-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.1 1.9E-05 6.5E-10 61.5 8.7 86 76-165 126-213 (358)
233 3e70_C DPA, signal recognition 98.0 1.1E-05 3.7E-10 62.3 5.7 91 58-160 213-309 (328)
234 3q5d_A Atlastin-1; G protein, 97.8 2.7E-05 9.3E-10 62.4 5.6 25 6-30 65-89 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.8 1.6E-06 5.5E-11 70.2 -1.7 110 6-120 37-156 (469)
236 4dzz_A Plasmid partitioning pr 97.7 6.2E-05 2.1E-09 53.7 5.5 85 57-148 76-162 (206)
237 1ye8_A Protein THEP1, hypothet 97.6 3.8E-05 1.3E-09 53.9 3.0 23 9-31 1-23 (178)
238 1t9h_A YLOQ, probable GTPase E 97.4 5E-05 1.7E-09 58.0 2.3 23 10-32 175-197 (307)
239 1kgd_A CASK, peripheral plasma 97.4 6.8E-05 2.3E-09 52.6 2.8 22 10-31 7-28 (180)
240 2xxa_A Signal recognition part 97.4 0.0028 9.5E-08 50.7 12.2 83 57-150 184-273 (433)
241 1lvg_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 53.2 2.8 21 10-30 6-26 (198)
242 2yv5_A YJEQ protein; hydrolase 97.4 0.0004 1.4E-08 52.9 6.5 22 10-32 167-188 (302)
243 1ex7_A Guanylate kinase; subst 97.4 2.7E-05 9.2E-10 55.1 -0.1 21 11-31 4-24 (186)
244 1zp6_A Hypothetical protein AT 97.3 0.00011 3.7E-09 51.8 3.0 22 10-31 11-32 (191)
245 1knq_A Gluconate kinase; ALFA/ 97.3 0.00016 5.3E-09 50.3 3.5 30 1-30 1-30 (175)
246 3a00_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 51.6 2.7 21 11-31 4-24 (186)
247 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 52.2 2.8 22 10-31 9-30 (205)
248 4gp7_A Metallophosphoesterase; 97.3 0.00013 4.5E-09 50.7 2.7 20 10-29 11-30 (171)
249 1s96_A Guanylate kinase, GMP k 97.3 0.00014 5E-09 52.7 2.8 23 10-32 18-40 (219)
250 1znw_A Guanylate kinase, GMP k 97.2 0.00015 5E-09 52.1 2.8 22 10-31 22-43 (207)
251 3ney_A 55 kDa erythrocyte memb 97.2 0.00018 6.3E-09 51.2 3.0 23 9-31 20-42 (197)
252 1z6g_A Guanylate kinase; struc 97.2 0.00017 5.7E-09 52.3 2.8 23 10-32 25-47 (218)
253 3tau_A Guanylate kinase, GMP k 97.2 0.0002 7E-09 51.4 3.0 23 10-32 10-32 (208)
254 3c8u_A Fructokinase; YP_612366 97.2 0.0002 6.7E-09 51.4 2.8 24 7-30 21-44 (208)
255 1ly1_A Polynucleotide kinase; 97.2 0.00027 9.3E-09 49.1 3.4 22 9-30 3-24 (181)
256 3tif_A Uncharacterized ABC tra 97.2 0.00022 7.5E-09 52.3 3.0 23 10-32 33-55 (235)
257 1htw_A HI0065; nucleotide-bind 97.1 0.00022 7.6E-09 49.0 2.8 23 10-32 35-57 (158)
258 2qor_A Guanylate kinase; phosp 97.1 0.00024 8.3E-09 50.8 3.0 22 9-30 13-34 (204)
259 3lw7_A Adenylate kinase relate 97.1 0.00027 9.3E-09 48.8 3.2 20 9-28 2-21 (179)
260 2bdt_A BH3686; alpha-beta prot 97.1 0.00027 9.1E-09 49.8 3.0 21 10-30 4-24 (189)
261 1uf9_A TT1252 protein; P-loop, 97.1 0.00032 1.1E-08 49.8 3.4 31 1-31 1-31 (203)
262 2pcj_A ABC transporter, lipopr 97.1 0.00026 8.9E-09 51.5 2.9 23 10-32 32-54 (224)
263 1kag_A SKI, shikimate kinase I 97.1 0.00027 9.4E-09 48.9 2.9 23 9-31 5-27 (173)
264 3fb4_A Adenylate kinase; psych 97.1 0.00029 9.8E-09 50.7 3.1 22 9-30 1-22 (216)
265 2rcn_A Probable GTPase ENGC; Y 97.1 0.00028 9.4E-09 55.0 3.1 24 10-33 217-240 (358)
266 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 50.7 3.1 22 9-30 1-22 (216)
267 3kb2_A SPBC2 prophage-derived 97.1 0.00028 9.6E-09 48.7 2.8 21 10-30 3-23 (173)
268 3sr0_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 50.3 3.2 22 9-30 1-22 (206)
269 2j41_A Guanylate kinase; GMP, 97.1 0.00027 9.4E-09 50.3 2.8 24 9-32 7-30 (207)
270 2onk_A Molybdate/tungstate ABC 97.1 0.00032 1.1E-08 51.7 3.1 23 10-32 26-48 (240)
271 4eun_A Thermoresistant glucoki 97.1 0.0003 1E-08 50.1 2.8 22 9-30 30-51 (200)
272 2bbw_A Adenylate kinase 4, AK4 97.1 0.00035 1.2E-08 51.4 3.3 21 9-29 28-48 (246)
273 1sgw_A Putative ABC transporte 97.1 0.00033 1.1E-08 50.6 3.0 23 10-32 37-59 (214)
274 3gfo_A Cobalt import ATP-bindi 97.0 0.00033 1.1E-08 52.7 3.0 23 10-32 36-58 (275)
275 1b0u_A Histidine permease; ABC 97.0 0.00034 1.1E-08 52.2 3.0 23 10-32 34-56 (262)
276 2wwf_A Thymidilate kinase, put 97.0 0.00047 1.6E-08 49.3 3.7 24 7-30 9-32 (212)
277 2cbz_A Multidrug resistance-as 97.0 0.00035 1.2E-08 51.3 3.0 23 10-32 33-55 (237)
278 1qhx_A CPT, protein (chloramph 97.0 0.00038 1.3E-08 48.4 2.9 22 9-30 4-25 (178)
279 1g6h_A High-affinity branched- 97.0 0.00037 1.3E-08 51.8 3.0 23 10-32 35-57 (257)
280 3ec2_A DNA replication protein 97.0 0.00029 1E-08 49.2 2.3 23 9-31 39-61 (180)
281 2pze_A Cystic fibrosis transme 97.0 0.0004 1.4E-08 50.7 3.0 23 10-32 36-58 (229)
282 2i3b_A HCR-ntpase, human cance 97.0 0.00035 1.2E-08 49.5 2.6 21 10-30 3-23 (189)
283 2olj_A Amino acid ABC transpor 97.0 0.0004 1.4E-08 51.8 3.0 23 10-32 52-74 (263)
284 1mv5_A LMRA, multidrug resista 97.0 0.0004 1.4E-08 51.2 3.0 23 10-32 30-52 (243)
285 1ji0_A ABC transporter; ATP bi 97.0 0.00041 1.4E-08 51.1 3.0 23 10-32 34-56 (240)
286 2eyu_A Twitching motility prot 97.0 0.00037 1.3E-08 52.0 2.7 21 10-30 27-47 (261)
287 2ff7_A Alpha-hemolysin translo 97.0 0.00041 1.4E-08 51.3 3.0 23 10-32 37-59 (247)
288 4g1u_C Hemin import ATP-bindin 97.0 0.00057 1.9E-08 51.1 3.8 23 10-32 39-61 (266)
289 1vpl_A ABC transporter, ATP-bi 97.0 0.00042 1.4E-08 51.5 3.0 23 10-32 43-65 (256)
290 2jaq_A Deoxyguanosine kinase; 97.0 0.00046 1.6E-08 49.0 3.2 21 10-30 2-22 (205)
291 3asz_A Uridine kinase; cytidin 97.0 0.00038 1.3E-08 49.9 2.7 23 8-30 6-28 (211)
292 2qi9_C Vitamin B12 import ATP- 97.0 0.00043 1.5E-08 51.2 3.0 23 10-32 28-50 (249)
293 1nks_A Adenylate kinase; therm 97.0 0.0005 1.7E-08 48.3 3.2 21 10-30 3-23 (194)
294 1e4v_A Adenylate kinase; trans 97.0 0.00045 1.6E-08 49.7 3.0 22 9-30 1-22 (214)
295 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00046 1.6E-08 51.1 3.0 22 10-31 31-52 (250)
296 3b85_A Phosphate starvation-in 96.9 0.00034 1.2E-08 50.3 2.3 22 10-31 24-45 (208)
297 3t61_A Gluconokinase; PSI-biol 96.9 0.00045 1.5E-08 49.2 2.9 22 9-30 19-40 (202)
298 3vaa_A Shikimate kinase, SK; s 96.9 0.00051 1.8E-08 48.8 3.2 22 9-30 26-47 (199)
299 2ghi_A Transport protein; mult 96.9 0.00046 1.6E-08 51.4 3.0 22 10-31 48-69 (260)
300 1np6_A Molybdopterin-guanine d 96.9 0.00051 1.8E-08 47.9 3.0 24 8-31 6-29 (174)
301 1u0l_A Probable GTPase ENGC; p 96.9 0.00056 1.9E-08 52.0 3.5 24 10-33 171-194 (301)
302 2zu0_C Probable ATP-dependent 96.9 0.0005 1.7E-08 51.4 3.1 22 10-31 48-69 (267)
303 2if2_A Dephospho-COA kinase; a 96.9 0.00052 1.8E-08 48.9 3.1 22 9-30 2-23 (204)
304 2ihy_A ABC transporter, ATP-bi 96.9 0.00049 1.7E-08 51.8 3.0 23 10-32 49-71 (279)
305 1kht_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 48.0 3.2 22 9-30 4-25 (192)
306 2v9p_A Replication protein E1; 96.9 0.00048 1.6E-08 52.5 2.9 21 10-30 128-148 (305)
307 3cm0_A Adenylate kinase; ATP-b 96.9 0.00061 2.1E-08 47.7 3.3 22 9-30 5-26 (186)
308 2ixe_A Antigen peptide transpo 96.9 0.00049 1.7E-08 51.6 3.0 23 10-32 47-69 (271)
309 2ehv_A Hypothetical protein PH 96.9 0.00051 1.8E-08 50.3 3.0 20 10-29 32-51 (251)
310 2rhm_A Putative kinase; P-loop 96.9 0.00061 2.1E-08 47.9 3.3 22 9-30 6-27 (193)
311 2nq2_C Hypothetical ABC transp 96.9 0.00051 1.7E-08 51.0 3.0 23 10-32 33-55 (253)
312 3co5_A Putative two-component 96.9 0.0018 6.1E-08 43.5 5.4 23 9-31 28-50 (143)
313 2cdn_A Adenylate kinase; phosp 96.9 0.00066 2.3E-08 48.2 3.5 25 6-30 18-42 (201)
314 1cke_A CK, MSSA, protein (cyti 96.9 0.00059 2E-08 49.4 3.2 22 9-30 6-27 (227)
315 2yz2_A Putative ABC transporte 96.9 0.00054 1.9E-08 51.2 3.0 23 10-32 35-57 (266)
316 1jjv_A Dephospho-COA kinase; P 96.9 0.0007 2.4E-08 48.3 3.4 22 9-30 3-24 (206)
317 3uie_A Adenylyl-sulfate kinase 96.9 0.00057 1.9E-08 48.6 2.9 22 9-30 26-47 (200)
318 2pt5_A Shikimate kinase, SK; a 96.9 0.00069 2.4E-08 46.6 3.2 22 9-30 1-22 (168)
319 3lnc_A Guanylate kinase, GMP k 96.8 0.00036 1.2E-08 50.9 1.7 22 10-31 29-51 (231)
320 3trf_A Shikimate kinase, SK; a 96.8 0.00068 2.3E-08 47.4 3.1 22 9-30 6-27 (185)
321 1qf9_A UMP/CMP kinase, protein 96.8 0.00091 3.1E-08 46.9 3.8 23 8-30 6-28 (194)
322 4a74_A DNA repair and recombin 96.8 0.00056 1.9E-08 49.5 2.7 22 10-31 27-48 (231)
323 3tlx_A Adenylate kinase 2; str 96.8 0.00082 2.8E-08 49.5 3.6 24 7-30 28-51 (243)
324 3aez_A Pantothenate kinase; tr 96.8 0.00058 2E-08 52.2 2.8 25 6-30 88-112 (312)
325 1aky_A Adenylate kinase; ATP:A 96.8 0.00074 2.5E-08 48.7 3.2 22 9-30 5-26 (220)
326 2pjz_A Hypothetical protein ST 96.8 0.00076 2.6E-08 50.3 3.3 23 10-32 32-54 (263)
327 2plr_A DTMP kinase, probable t 96.8 0.00083 2.8E-08 47.9 3.3 22 9-30 5-26 (213)
328 2xb4_A Adenylate kinase; ATP-b 96.8 0.00077 2.6E-08 48.9 3.2 22 9-30 1-22 (223)
329 2v54_A DTMP kinase, thymidylat 96.8 0.00098 3.4E-08 47.3 3.7 23 9-31 5-27 (204)
330 1y63_A LMAJ004144AAA protein; 96.8 0.00088 3E-08 47.0 3.4 25 7-31 9-33 (184)
331 1tev_A UMP-CMP kinase; ploop, 96.8 0.00087 3E-08 47.1 3.4 23 8-30 3-25 (196)
332 1gvn_B Zeta; postsegregational 96.8 0.0009 3.1E-08 50.6 3.5 24 7-30 32-55 (287)
333 1via_A Shikimate kinase; struc 96.8 0.00071 2.4E-08 47.0 2.7 21 10-30 6-26 (175)
334 2kjq_A DNAA-related protein; s 96.8 0.00053 1.8E-08 46.6 2.0 22 10-31 38-59 (149)
335 2f1r_A Molybdopterin-guanine d 96.8 0.0004 1.4E-08 48.4 1.3 21 10-30 4-24 (171)
336 2x8a_A Nuclear valosin-contain 96.7 0.00072 2.5E-08 50.7 2.8 21 11-31 47-67 (274)
337 1zd8_A GTP:AMP phosphotransfer 96.7 0.00084 2.9E-08 48.7 3.1 21 9-29 8-28 (227)
338 2chg_A Replication factor C sm 96.7 0.0022 7.5E-08 45.7 5.3 21 10-30 40-60 (226)
339 3nh6_A ATP-binding cassette SU 96.7 0.0006 2E-08 52.0 2.3 22 10-31 82-103 (306)
340 3jvv_A Twitching mobility prot 96.7 0.00073 2.5E-08 52.7 2.8 21 10-30 125-145 (356)
341 1lw7_A Transcriptional regulat 96.7 0.00071 2.4E-08 52.9 2.7 24 8-31 170-193 (365)
342 2bbs_A Cystic fibrosis transme 96.7 0.00081 2.8E-08 50.9 2.9 23 10-32 66-88 (290)
343 1zak_A Adenylate kinase; ATP:A 96.7 0.00078 2.7E-08 48.7 2.7 23 8-30 5-27 (222)
344 3iij_A Coilin-interacting nucl 96.7 0.00094 3.2E-08 46.5 2.9 22 9-30 12-33 (180)
345 3be4_A Adenylate kinase; malar 96.7 0.001 3.4E-08 48.0 3.0 23 8-30 5-27 (217)
346 2qt1_A Nicotinamide riboside k 96.7 0.0016 5.6E-08 46.4 4.1 25 7-31 20-44 (207)
347 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.7E-08 46.0 3.0 22 9-30 5-26 (169)
348 2ze6_A Isopentenyl transferase 96.7 0.00094 3.2E-08 49.5 2.9 20 10-29 3-22 (253)
349 2jeo_A Uridine-cytidine kinase 96.7 0.00089 3.1E-08 49.2 2.8 22 9-30 26-47 (245)
350 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 46.6 3.1 21 10-30 2-22 (195)
351 1ixz_A ATP-dependent metallopr 96.7 0.00093 3.2E-08 49.3 2.8 21 11-31 52-72 (254)
352 4ido_A Atlastin-1; GTPase, GTP 96.6 0.005 1.7E-07 49.3 7.0 25 5-29 64-88 (457)
353 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.9E-08 46.6 3.1 22 9-30 10-31 (196)
354 1jbk_A CLPB protein; beta barr 96.6 0.0012 4.2E-08 45.9 3.3 22 9-30 44-65 (195)
355 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.1E-08 47.0 3.7 22 9-30 5-26 (218)
356 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.5E-08 51.3 2.9 23 10-32 173-195 (330)
357 3tui_C Methionine import ATP-b 96.6 0.0011 3.7E-08 51.8 3.1 22 11-32 57-78 (366)
358 3fvq_A Fe(3+) IONS import ATP- 96.6 0.001 3.5E-08 51.8 3.0 22 11-32 33-54 (359)
359 1ukz_A Uridylate kinase; trans 96.6 0.0015 5E-08 46.4 3.6 23 8-30 15-37 (203)
360 3umf_A Adenylate kinase; rossm 96.6 0.0012 4E-08 47.8 3.0 20 11-30 32-51 (217)
361 1ak2_A Adenylate kinase isoenz 96.6 0.0013 4.5E-08 47.9 3.3 23 8-30 16-38 (233)
362 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.4E-08 46.5 2.5 22 9-30 3-24 (184)
363 2gza_A Type IV secretion syste 96.6 0.0011 3.6E-08 51.9 2.9 22 10-31 177-198 (361)
364 2z0h_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 46.4 3.1 21 10-30 2-22 (197)
365 2bwj_A Adenylate kinase 5; pho 96.6 0.0013 4.3E-08 46.5 3.1 22 9-30 13-34 (199)
366 1z47_A CYSA, putative ABC-tran 96.6 0.0012 4E-08 51.4 3.0 22 11-32 44-65 (355)
367 2ewv_A Twitching motility prot 96.6 0.0011 3.8E-08 52.0 2.9 21 10-30 138-158 (372)
368 1gtv_A TMK, thymidylate kinase 96.6 0.00048 1.7E-08 49.3 0.9 21 10-30 2-22 (214)
369 1rj9_A FTSY, signal recognitio 96.6 0.0011 3.6E-08 50.6 2.8 84 58-151 186-281 (304)
370 3b9q_A Chloroplast SRP recepto 96.6 0.0011 3.8E-08 50.5 2.8 22 9-30 101-122 (302)
371 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 49.0 2.9 22 9-30 5-26 (260)
372 1e6c_A Shikimate kinase; phosp 96.6 0.0013 4.5E-08 45.3 2.9 21 10-30 4-24 (173)
373 1sxj_E Activator 1 40 kDa subu 96.6 0.0052 1.8E-07 47.5 6.7 21 10-30 38-58 (354)
374 3tqc_A Pantothenate kinase; bi 96.6 0.0016 5.4E-08 50.0 3.6 25 6-30 90-114 (321)
375 2yyz_A Sugar ABC transporter, 96.6 0.0013 4.3E-08 51.4 3.0 22 11-32 32-53 (359)
376 2p5t_B PEZT; postsegregational 96.6 0.0011 3.8E-08 49.0 2.6 25 6-30 30-54 (253)
377 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.5E-08 45.2 3.7 23 8-30 13-35 (186)
378 2it1_A 362AA long hypothetical 96.5 0.0013 4.5E-08 51.3 3.1 22 11-32 32-53 (362)
379 1p9r_A General secretion pathw 96.5 0.0011 3.9E-08 52.7 2.8 22 10-31 169-190 (418)
380 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.7E-08 46.9 3.0 23 8-30 9-31 (215)
381 3rlf_A Maltose/maltodextrin im 96.5 0.0013 4.6E-08 51.5 3.1 22 11-32 32-53 (381)
382 1in4_A RUVB, holliday junction 96.5 0.0012 4.2E-08 50.9 2.8 21 10-30 53-73 (334)
383 1sq5_A Pantothenate kinase; P- 96.5 0.0012 4.2E-08 50.3 2.7 23 8-30 80-102 (308)
384 1rz3_A Hypothetical protein rb 96.5 0.0013 4.5E-08 46.8 2.7 24 7-30 21-44 (201)
385 1odf_A YGR205W, hypothetical 3 96.5 0.0019 6.6E-08 48.8 3.7 24 6-29 29-52 (290)
386 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.4E-08 48.2 3.2 21 9-29 28-48 (252)
387 1g29_1 MALK, maltose transport 96.5 0.0014 4.9E-08 51.3 3.0 22 11-32 32-53 (372)
388 1iy2_A ATP-dependent metallopr 96.5 0.0013 4.6E-08 49.2 2.8 22 10-31 75-96 (278)
389 3kta_A Chromosome segregation 96.5 0.0015 5.2E-08 45.5 2.9 21 10-30 28-48 (182)
390 1v43_A Sugar-binding transport 96.5 0.0015 5.1E-08 51.2 3.1 23 10-32 39-61 (372)
391 2oap_1 GSPE-2, type II secreti 96.5 0.0014 4.7E-08 53.6 3.0 23 10-32 262-284 (511)
392 2vli_A Antibiotic resistance p 96.5 0.00099 3.4E-08 46.4 1.9 22 9-30 6-27 (183)
393 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0017 5.6E-08 47.0 3.0 21 10-30 25-45 (235)
394 1zuh_A Shikimate kinase; alpha 96.4 0.002 6.8E-08 44.3 3.2 22 9-30 8-29 (168)
395 2pez_A Bifunctional 3'-phospho 96.4 0.0018 6.1E-08 45.1 2.9 22 9-30 6-27 (179)
396 3d31_A Sulfate/molybdate ABC t 96.4 0.0012 4.1E-08 51.3 2.2 23 10-32 28-50 (348)
397 1zcb_A G alpha I/13; GTP-bindi 96.4 0.0019 6.6E-08 50.4 3.3 23 6-28 31-53 (362)
398 3r20_A Cytidylate kinase; stru 96.4 0.002 6.7E-08 47.1 3.2 23 8-30 9-31 (233)
399 2vp4_A Deoxynucleoside kinase; 96.4 0.0014 4.8E-08 47.7 2.4 24 8-31 20-43 (230)
400 1uj2_A Uridine-cytidine kinase 96.4 0.0021 7.1E-08 47.5 3.3 24 7-30 21-44 (252)
401 2p65_A Hypothetical protein PF 96.4 0.0016 5.3E-08 45.2 2.4 22 9-30 44-65 (187)
402 1nij_A Hypothetical protein YJ 96.4 0.0013 4.6E-08 50.4 2.2 23 9-31 5-27 (318)
403 1lv7_A FTSH; alpha/beta domain 96.4 0.0018 6E-08 47.9 2.8 22 9-30 46-67 (257)
404 2og2_A Putative signal recogni 96.4 0.0018 6.2E-08 50.4 2.8 22 9-30 158-179 (359)
405 3bos_A Putative DNA replicatio 96.3 0.0023 7.9E-08 46.4 3.2 23 8-30 52-74 (242)
406 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0024 8E-08 43.3 3.0 19 11-29 26-44 (149)
407 3gd7_A Fusion complex of cysti 96.3 0.002 6.8E-08 50.8 3.0 22 10-31 49-70 (390)
408 2w58_A DNAI, primosome compone 96.3 0.0023 7.9E-08 45.4 3.0 22 9-30 55-76 (202)
409 1ltq_A Polynucleotide kinase; 96.3 0.0025 8.6E-08 48.2 3.4 22 9-30 3-24 (301)
410 1m7g_A Adenylylsulfate kinase; 96.3 0.0022 7.5E-08 46.0 2.9 22 9-30 26-47 (211)
411 1cr0_A DNA primase/helicase; R 96.3 0.002 6.7E-08 48.7 2.7 22 10-31 37-58 (296)
412 1oxx_K GLCV, glucose, ABC tran 96.3 0.0012 4E-08 51.5 1.4 23 10-32 33-55 (353)
413 2f6r_A COA synthase, bifunctio 96.3 0.0034 1.2E-07 47.2 3.9 23 7-29 74-96 (281)
414 2yhs_A FTSY, cell division pro 96.3 0.0021 7.3E-08 52.0 2.8 22 9-30 294-315 (503)
415 3gmt_A Adenylate kinase; ssgci 96.3 0.0029 9.8E-08 46.1 3.2 26 5-30 5-30 (230)
416 1tue_A Replication protein E1; 96.2 0.0017 6E-08 46.4 2.0 21 10-30 60-80 (212)
417 4eaq_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 46.3 3.0 23 8-30 26-48 (229)
418 2cvh_A DNA repair and recombin 96.2 0.0026 8.9E-08 45.6 3.0 21 10-30 22-42 (220)
419 1n0w_A DNA repair protein RAD5 96.2 0.0027 9.1E-08 46.2 3.0 22 10-31 26-47 (243)
420 3nwj_A ATSK2; P loop, shikimat 96.2 0.0023 8E-08 47.3 2.7 22 9-30 49-70 (250)
421 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0022 7.5E-08 51.7 2.7 22 10-31 140-161 (460)
422 3n70_A Transport activator; si 96.2 0.0029 1E-07 42.5 2.9 23 9-31 25-47 (145)
423 2obl_A ESCN; ATPase, hydrolase 96.2 0.0027 9.2E-08 49.3 3.0 23 10-32 73-95 (347)
424 1svm_A Large T antigen; AAA+ f 96.1 0.0028 9.6E-08 49.7 2.8 22 9-30 170-191 (377)
425 3uc9_A Increased recombination 96.1 0.0086 2.9E-07 43.4 5.0 24 9-32 30-53 (233)
426 2grj_A Dephospho-COA kinase; T 96.1 0.004 1.4E-07 44.1 3.3 25 6-30 10-34 (192)
427 1njg_A DNA polymerase III subu 96.1 0.0035 1.2E-07 45.2 3.0 21 10-30 47-67 (250)
428 3b9p_A CG5977-PA, isoform A; A 96.1 0.003 1E-07 47.6 2.7 22 9-30 55-76 (297)
429 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0034 1.2E-07 46.3 2.9 22 9-30 40-61 (262)
430 3h4m_A Proteasome-activating n 96.1 0.0033 1.1E-07 47.1 2.8 23 9-31 52-74 (285)
431 3ozx_A RNAse L inhibitor; ATP 96.1 0.0043 1.5E-07 51.0 3.7 23 10-32 27-49 (538)
432 1yqt_A RNAse L inhibitor; ATP- 96.0 0.005 1.7E-07 50.7 4.0 23 10-32 49-71 (538)
433 3t15_A Ribulose bisphosphate c 96.0 0.0034 1.2E-07 47.5 2.8 22 9-30 37-58 (293)
434 1q3t_A Cytidylate kinase; nucl 96.0 0.0043 1.5E-07 45.3 3.2 25 6-30 14-38 (236)
435 3cf0_A Transitional endoplasmi 96.0 0.0035 1.2E-07 47.6 2.7 23 9-31 50-72 (301)
436 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.004 1.4E-07 48.7 3.0 19 11-29 26-44 (365)
437 2qmh_A HPR kinase/phosphorylas 96.0 0.0045 1.5E-07 44.0 3.0 24 9-32 35-58 (205)
438 3j16_B RLI1P; ribosome recycli 96.0 0.0052 1.8E-07 51.3 3.8 23 10-32 105-127 (608)
439 3pfi_A Holliday junction ATP-d 96.0 0.011 3.7E-07 45.4 5.4 23 9-31 56-78 (338)
440 3b60_A Lipid A export ATP-bind 95.9 0.0041 1.4E-07 51.6 3.2 23 10-32 371-393 (582)
441 3euj_A Chromosome partition pr 95.9 0.0038 1.3E-07 50.5 2.8 21 10-30 31-51 (483)
442 1l8q_A Chromosomal replication 95.9 0.0039 1.3E-07 47.7 2.7 22 9-30 38-59 (324)
443 3zvl_A Bifunctional polynucleo 95.9 0.0042 1.4E-07 49.4 3.0 23 8-30 258-280 (416)
444 1nlf_A Regulatory protein REPA 95.9 0.0043 1.5E-07 46.4 2.9 21 10-30 32-52 (279)
445 4fcw_A Chaperone protein CLPB; 95.9 0.0069 2.4E-07 45.8 4.0 22 9-30 48-69 (311)
446 3syl_A Protein CBBX; photosynt 95.8 0.0062 2.1E-07 46.1 3.6 23 8-30 67-89 (309)
447 3ake_A Cytidylate kinase; CMP 95.8 0.0051 1.7E-07 43.6 2.9 21 10-30 4-24 (208)
448 3bk7_A ABC transporter ATP-bin 95.8 0.0068 2.3E-07 50.6 4.0 23 10-32 119-141 (607)
449 2dpy_A FLII, flagellum-specifi 95.8 0.0048 1.7E-07 49.4 3.0 23 10-32 159-181 (438)
450 2px0_A Flagellar biosynthesis 95.8 0.0046 1.6E-07 46.9 2.7 85 57-151 183-273 (296)
451 3b5x_A Lipid A export ATP-bind 95.8 0.0066 2.2E-07 50.4 3.8 23 10-32 371-393 (582)
452 1ofh_A ATP-dependent HSL prote 95.8 0.0053 1.8E-07 46.3 2.9 22 9-30 51-72 (310)
453 3bk7_A ABC transporter ATP-bin 95.8 0.0069 2.4E-07 50.6 3.8 23 10-32 384-406 (607)
454 2dr3_A UPF0273 protein PH0284; 95.8 0.0056 1.9E-07 44.6 2.9 21 10-30 25-45 (247)
455 2yl4_A ATP-binding cassette SU 95.8 0.0043 1.5E-07 51.7 2.6 23 10-32 372-394 (595)
456 1d2n_A N-ethylmaleimide-sensit 95.8 0.008 2.7E-07 44.7 3.8 25 7-31 63-87 (272)
457 3qf4_B Uncharacterized ABC tra 95.8 0.0047 1.6E-07 51.5 2.7 23 10-32 383-405 (598)
458 3crm_A TRNA delta(2)-isopenten 95.7 0.007 2.4E-07 46.4 3.5 22 9-30 6-27 (323)
459 2qby_A CDC6 homolog 1, cell di 95.7 0.005 1.7E-07 47.9 2.7 22 9-30 46-67 (386)
460 3ozx_A RNAse L inhibitor; ATP 95.7 0.0073 2.5E-07 49.7 3.7 23 10-32 296-318 (538)
461 4b4t_K 26S protease regulatory 95.7 0.0053 1.8E-07 49.0 2.8 21 10-30 208-228 (428)
462 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0084 2.9E-07 49.3 4.0 23 10-32 314-336 (538)
463 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0083 2.8E-07 46.5 3.7 23 7-29 23-45 (359)
464 4a82_A Cystic fibrosis transme 95.7 0.0041 1.4E-07 51.6 2.2 22 10-31 369-390 (578)
465 3qks_A DNA double-strand break 95.7 0.0067 2.3E-07 43.3 3.0 19 11-29 26-44 (203)
466 1sxj_C Activator 1 40 kDa subu 95.7 0.0054 1.9E-07 47.3 2.7 22 10-31 48-69 (340)
467 1fnn_A CDC6P, cell division co 95.7 0.0057 1.9E-07 47.7 2.8 22 10-31 46-67 (389)
468 1vma_A Cell division protein F 95.7 0.006 2E-07 46.5 2.8 86 57-152 187-284 (306)
469 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.006 2E-07 46.8 2.8 23 9-31 46-68 (322)
470 4b4t_M 26S protease regulatory 95.7 0.0059 2E-07 48.8 2.8 23 9-31 216-238 (434)
471 3foz_A TRNA delta(2)-isopenten 95.6 0.0086 2.9E-07 45.6 3.6 23 8-30 10-32 (316)
472 1c9k_A COBU, adenosylcobinamid 95.6 0.0073 2.5E-07 42.2 2.9 21 11-31 2-22 (180)
473 4b4t_L 26S protease subunit RP 95.6 0.0063 2.2E-07 48.6 2.8 22 9-30 216-237 (437)
474 3d3q_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 46.7 3.0 22 9-30 8-29 (340)
475 1pzn_A RAD51, DNA repair and r 95.6 0.0067 2.3E-07 47.1 2.9 22 10-31 133-154 (349)
476 3eie_A Vacuolar protein sortin 95.6 0.0074 2.5E-07 46.2 3.1 22 9-30 52-73 (322)
477 3cwq_A Para family chromosome 95.5 0.095 3.3E-06 37.3 8.7 85 57-148 68-153 (209)
478 3qf4_A ABC transporter, ATP-bi 95.5 0.0055 1.9E-07 51.0 2.4 22 10-31 371-392 (587)
479 3j16_B RLI1P; ribosome recycli 95.5 0.0098 3.4E-07 49.6 3.8 23 11-33 381-403 (608)
480 3a8t_A Adenylate isopentenyltr 95.5 0.0086 2.9E-07 46.1 3.2 21 10-30 42-62 (339)
481 3exa_A TRNA delta(2)-isopenten 95.5 0.0083 2.8E-07 45.8 3.0 22 10-31 5-26 (322)
482 1sxj_D Activator 1 41 kDa subu 95.5 0.0073 2.5E-07 46.5 2.8 22 10-31 60-81 (353)
483 4b4t_J 26S protease regulatory 95.5 0.0074 2.5E-07 47.6 2.8 22 9-30 183-204 (405)
484 3u61_B DNA polymerase accessor 95.5 0.14 4.8E-06 38.9 9.9 21 11-31 51-71 (324)
485 3uk6_A RUVB-like 2; hexameric 95.5 0.0075 2.6E-07 46.8 2.8 21 10-30 72-92 (368)
486 3te6_A Regulatory protein SIR3 95.5 0.0064 2.2E-07 46.5 2.3 24 7-30 44-67 (318)
487 2r62_A Cell division protease 95.4 0.0035 1.2E-07 46.5 0.8 21 10-30 46-66 (268)
488 2v1u_A Cell division control p 95.4 0.0073 2.5E-07 46.9 2.6 23 8-30 44-66 (387)
489 2qgz_A Helicase loader, putati 95.4 0.0093 3.2E-07 45.4 3.1 23 8-30 152-174 (308)
490 1p5z_B DCK, deoxycytidine kina 95.4 0.0068 2.3E-07 44.9 2.3 25 7-31 23-47 (263)
491 3pxg_A Negative regulator of g 95.4 0.0085 2.9E-07 48.4 2.9 22 9-30 202-223 (468)
492 2o5v_A DNA replication and rep 95.3 0.056 1.9E-06 42.1 7.3 20 10-29 28-47 (359)
493 2bjv_A PSP operon transcriptio 95.3 0.01 3.4E-07 44.0 2.9 23 9-31 30-52 (265)
494 2qp9_X Vacuolar protein sortin 95.3 0.0094 3.2E-07 46.3 2.9 23 9-31 85-107 (355)
495 2ocp_A DGK, deoxyguanosine kin 95.3 0.012 4.1E-07 43.0 3.3 22 9-30 3-24 (241)
496 3hws_A ATP-dependent CLP prote 95.3 0.0097 3.3E-07 46.3 2.9 23 8-30 51-73 (363)
497 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0087 3E-07 48.7 2.7 22 10-31 66-87 (499)
498 4edh_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 42.6 2.9 23 8-30 6-28 (213)
499 1um8_A ATP-dependent CLP prote 95.3 0.01 3.4E-07 46.4 2.9 22 9-30 73-94 (376)
500 3d8b_A Fidgetin-like protein 1 95.3 0.0099 3.4E-07 46.2 2.9 23 8-30 117-139 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.9e-44 Score=262.09 Aligned_cols=197 Identities=37% Similarity=0.618 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+|+|.+|||||||+++|..+.+...+.+|++.++....+..++..+.+.||||+|++++..++..++..+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|||++++++|+.+..|+..+......+.|++||+||+|+.+.+.+..+++.++++.++++|++|||++|.||+++|..|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988877789999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCC-CCccccCCCCCCCCCCCCC
Q 028792 166 AASIKNRMASQPASNNAR-PPTVQIRGQPVNQKSGCCS 202 (203)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 202 (203)
.+.+.+............ ........++.+++++|||
T Consensus 171 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 171 AAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHC----------------------------------
T ss_pred HHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 998875544333222111 1111222233345667777
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.2e-40 Score=238.78 Aligned_cols=176 Identities=75% Similarity=1.189 Sum_probs=159.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+.+.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 66677899999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+|++++|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|+++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877666799999999999988777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 028792 161 AFMAMAASIKNRMASQ 176 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~ 176 (203)
+|.+|.+.+.+.....
T Consensus 161 l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 161 AFLTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998765443
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.3e-38 Score=230.19 Aligned_cols=201 Identities=36% Similarity=0.619 Sum_probs=151.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|++...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 56677889999999999999999999999988888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCC
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSA 155 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 155 (203)
+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+. ......++...++. ..+++++++||++|
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 9999999999999999999999888766543 368999999999997 44566777888877 56789999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCC-CCCCCccccCCCCCCCCCCCCC
Q 028792 156 TNVEQAFMAMAASIKNRMASQPASN-NARPPTVQIRGQPVNQKSGCCS 202 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
.|++++|.+|.+.+.+........+ ...+......++.+++++||||
T Consensus 160 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred CCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 9999999999999887654332111 1111112121233467888988
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.7e-36 Score=217.05 Aligned_cols=175 Identities=59% Similarity=1.042 Sum_probs=129.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+++.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 66677889999999999999999999999888877777888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+|++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877666799999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028792 161 AFMAMAASIKNRMAS 175 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~ 175 (203)
+|.+|.+.+.++...
T Consensus 161 l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 161 AFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998876553
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=213.66 Aligned_cols=176 Identities=87% Similarity=1.301 Sum_probs=159.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34567889999999999999999999999998888888888888888999999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
|++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++..++++++++||++|.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998887778999999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCC
Q 028792 162 FMAMAASIKNRMASQP 177 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~~ 177 (203)
|.+|.+.+.++.....
T Consensus 170 ~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 170 FMTMAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988765433
No 6
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=222.32 Aligned_cols=171 Identities=50% Similarity=0.813 Sum_probs=146.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 46789999999999999999999999988888788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776667899999999999876677888899999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028792 165 MAASIKNRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
|.+.+.+....
T Consensus 170 l~~~i~~~~~~ 180 (223)
T 3cpj_B 170 LINTIYQKVSK 180 (223)
T ss_dssp HHHHHTTCC--
T ss_pred HHHHHHHHhhh
Confidence 99998865444
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.6e-35 Score=212.41 Aligned_cols=177 Identities=47% Similarity=0.823 Sum_probs=160.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+++.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 56777899999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+|++|+|+|+++++++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999888877666899999999999977667888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC
Q 028792 161 AFMAMAASIKNRMASQP 177 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~~ 177 (203)
+|.+|.+.+.++.....
T Consensus 163 l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 163 AFVQCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99999999987765444
No 8
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=216.18 Aligned_cols=173 Identities=36% Similarity=0.604 Sum_probs=150.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++...+..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999998888777777765444 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877654 478999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC
Q 028792 163 MAMAASIKNRMASQP 177 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~ 177 (203)
.+|.+.+.++.....
T Consensus 169 ~~l~~~i~~~~~~~~ 183 (206)
T 2bov_A 169 FDLMREIRARKMEDS 183 (206)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccccc
Confidence 999999987654433
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=209.28 Aligned_cols=175 Identities=61% Similarity=0.954 Sum_probs=154.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|..+.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 56677899999999999999999999999998888888888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+|++++|+|+++++++..+..|+..+..... +.|+++|+||+|+.+......++...++...+++++++||++|.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999999999998877654 689999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 028792 161 AFMAMAASIKNRMASQ 176 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~ 176 (203)
+|++|.+.+.+.+...
T Consensus 161 l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 161 MFNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998776543
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-35 Score=213.96 Aligned_cols=172 Identities=49% Similarity=0.858 Sum_probs=157.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 56788999999999999999999999998888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999987677788888999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028792 164 AMAASIKNRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+.++..+
T Consensus 182 ~l~~~i~~~~~~ 193 (201)
T 2ew1_A 182 DLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999876543
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=213.39 Aligned_cols=171 Identities=50% Similarity=0.865 Sum_probs=147.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 56778999999999999999999999988887777888878888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 162 (203)
+|+|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998877666799999999999987667888889999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
.+|.+.+.++..
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999876543
No 12
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=7.4e-35 Score=210.17 Aligned_cols=172 Identities=52% Similarity=0.857 Sum_probs=152.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 35678899999999999999999999998888777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999997766778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
.+|.+.+.++..
T Consensus 176 ~~l~~~i~~~~~ 187 (191)
T 2a5j_A 176 INTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.4e-34 Score=208.27 Aligned_cols=170 Identities=51% Similarity=0.930 Sum_probs=154.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45678999999999999999999999988887777888888887888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988877656799999999999987677778889999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028792 164 AMAASIKNRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
+|.+.+.++.
T Consensus 178 ~l~~~i~~~~ 187 (189)
T 2gf9_A 178 RLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 14
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-34 Score=205.93 Aligned_cols=171 Identities=51% Similarity=0.944 Sum_probs=144.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
..+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4577899999999999999999999988875 456677887887777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766679999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
.+|.+.+.++..
T Consensus 166 ~~l~~~~~~~~~ 177 (180)
T 2g6b_A 166 TAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHhc
Confidence 999998875543
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=209.30 Aligned_cols=173 Identities=50% Similarity=0.931 Sum_probs=157.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
+..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++..+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 35678899999999999999999999999888887888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++|+|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887766679999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028792 163 MAMAASIKNRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
.+|.+.+.+....
T Consensus 163 ~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 163 ERLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999988876543
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=5.2e-35 Score=206.73 Aligned_cols=168 Identities=36% Similarity=0.732 Sum_probs=145.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 35678999999999999999999999988888788888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888776555789999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028792 164 AMAASIKN 171 (203)
Q Consensus 164 ~l~~~~~~ 171 (203)
+|.+.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.1e-34 Score=206.61 Aligned_cols=169 Identities=49% Similarity=0.891 Sum_probs=153.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 35678899999999999999999999998888777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998888776689999999999997767778888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028792 163 MAMAASIKN 171 (203)
Q Consensus 163 ~~l~~~~~~ 171 (203)
.+|.+.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999987753
No 18
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=208.78 Aligned_cols=172 Identities=44% Similarity=0.764 Sum_probs=156.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 45678899999999999999999999998888777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998877666679999999999998766778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
.+|.+.+.++..
T Consensus 180 ~~l~~~i~~~~~ 191 (193)
T 2oil_A 180 ETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 19
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=211.13 Aligned_cols=174 Identities=48% Similarity=0.807 Sum_probs=146.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 45788999999999999999999999988888878888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|.
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988777666799999999999977667788888999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 028792 164 AMAASIKNRMASQP 177 (203)
Q Consensus 164 ~l~~~~~~~~~~~~ 177 (203)
+|.+.+.++.....
T Consensus 181 ~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 181 KCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCC
Confidence 99999987665443
No 20
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2e-34 Score=205.62 Aligned_cols=174 Identities=32% Similarity=0.567 Sum_probs=152.1
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|..+.+..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5566778899999999999999999999998887777777766655 666778888899999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
+|++++|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 99999999999999999999998887443 44578999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028792 160 QAFMAMAASIKNRMAS 175 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~ 175 (203)
++|++|.+.+.++...
T Consensus 161 ~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 161 EAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999876543
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-35 Score=213.91 Aligned_cols=172 Identities=49% Similarity=0.937 Sum_probs=156.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++.++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 45678899999999999999999999998888888788888888888888887899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+....++...++..++++++++||++|.|++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988776689999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
++|.+.+.++..
T Consensus 178 ~~l~~~i~~~~~ 189 (191)
T 3dz8_A 178 ERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999887644
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.4e-34 Score=205.32 Aligned_cols=168 Identities=44% Similarity=0.719 Sum_probs=152.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999998888877888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028792 164 AMAASIKN 171 (203)
Q Consensus 164 ~l~~~~~~ 171 (203)
+|.+.+.+
T Consensus 168 ~l~~~~~~ 175 (181)
T 2efe_B 168 EIARRLPR 175 (181)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99887643
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2e-34 Score=203.63 Aligned_cols=166 Identities=56% Similarity=1.015 Sum_probs=144.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999998888777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||+|+ .......++..++++..+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888776667999999999999 445567788889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028792 166 AASIKNR 172 (203)
Q Consensus 166 ~~~~~~~ 172 (203)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988764
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.5e-34 Score=204.48 Aligned_cols=168 Identities=35% Similarity=0.589 Sum_probs=150.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
....+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4566789999999999999999999999888888878777666 667778888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecC-CCCCHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK-SATNVEQ 160 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~ 160 (203)
++++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+ +|.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999999888654 33578999999999998888889999999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 028792 161 AFMAMAASIKN 171 (203)
Q Consensus 161 ~~~~l~~~~~~ 171 (203)
+|.+|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 25
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.5e-34 Score=205.95 Aligned_cols=172 Identities=41% Similarity=0.795 Sum_probs=153.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeE-EEEEEECCe---------EEEEEEEeCCChhhhchh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 73 (203)
+.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||+.++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 6778899999999999999999999998888777788887776 556666655 689999999999999999
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
+..++..+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998877654 57899999999999876677888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q 028792 153 KSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
++|.|++++|.+|.+.+.++..+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999876654
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4e-34 Score=205.48 Aligned_cols=170 Identities=35% Similarity=0.640 Sum_probs=145.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999998887777666664 444566678888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+ .....+....++..++++++++||++|.|++++|.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988877543 5799999999999874 456678888999999999999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 028792 165 MAASIKNRMASQP 177 (203)
Q Consensus 165 l~~~~~~~~~~~~ 177 (203)
|.+.+.+.....+
T Consensus 160 l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 160 LVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc
Confidence 9999987766543
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.8e-34 Score=203.99 Aligned_cols=168 Identities=30% Similarity=0.487 Sum_probs=149.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4689999999999999999999998888888778877666 667778888899999999999999888999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988865543 47899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028792 165 MAASIKNRMA 174 (203)
Q Consensus 165 l~~~~~~~~~ 174 (203)
|.+.+.+...
T Consensus 163 l~~~~~~~~~ 172 (181)
T 3t5g_A 163 IILEAEKMDG 172 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9999876554
No 28
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=208.45 Aligned_cols=170 Identities=48% Similarity=0.878 Sum_probs=146.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 45678899999999999999999999998888777888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~ 161 (203)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++... +++++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999998888777668999999999999876777888888888875 789999999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 162 FMAMAASIKNR 172 (203)
Q Consensus 162 ~~~l~~~~~~~ 172 (203)
|.+|.+.+.++
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 29
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=6.6e-34 Score=200.94 Aligned_cols=166 Identities=40% Similarity=0.701 Sum_probs=151.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||.+++...+..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 35678999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|+|++++.++..+..|+..+........|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999998887666799999999999987777788889999999999999999999999999999
Q ss_pred HHHHHH
Q 028792 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998865
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=208.78 Aligned_cols=169 Identities=40% Similarity=0.693 Sum_probs=151.2
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
.+..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34567889999999999999999999999888777788888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
|++++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 99999999999999999999999988776667999999999999766677888899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028792 162 FMAMAASIK 170 (203)
Q Consensus 162 ~~~l~~~~~ 170 (203)
|.+|.+.+.
T Consensus 177 ~~~l~~~i~ 185 (192)
T 2fg5_A 177 FQGISRQIP 185 (192)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999988663
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.8e-34 Score=202.08 Aligned_cols=165 Identities=47% Similarity=0.781 Sum_probs=150.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999888887778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
++|+|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776667999999999999776677788889999999999999999999999999999
Q ss_pred HHHHH
Q 028792 165 MAASI 169 (203)
Q Consensus 165 l~~~~ 169 (203)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 32
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-34 Score=212.07 Aligned_cols=169 Identities=30% Similarity=0.602 Sum_probs=142.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999998888777777776444 345667788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHcCC-CEEEEecCCC
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV--------VSYETAKAFADEIGI-PFMETSAKSA 155 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (203)
+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+... +..+++.+++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 68888877654 689999999999876543 367888889998886 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccC
Q 028792 156 TNVEQAFMAMAASIKNRMASQ 176 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~~~~~ 176 (203)
+|++++|.+|.+.+.+.....
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999988655443
No 33
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=5.7e-34 Score=203.37 Aligned_cols=174 Identities=41% Similarity=0.687 Sum_probs=135.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhchhhhcccc
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR 79 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (203)
|+.+....++|+++|++|+|||||+++|.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 56667789999999999999999999999988888878888777887777776 55688999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-cccCHHHHHHHHH-HcCCCEEEEecC
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EIGIPFMETSAK 153 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~ 153 (203)
.+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +.+..+++.+++. ..+++++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999999999999999999988866543 57899999999998543 4567788888887 456899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 028792 154 SATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~~~~~~ 174 (203)
+|.|++++|.+|.+.+.+++.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999886643
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=203.69 Aligned_cols=173 Identities=47% Similarity=0.813 Sum_probs=153.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+++....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34555678999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..++..+++...+++++++||+++.|++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999999888876543 468999999999984 34567788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028792 160 QAFMAMAASIKNRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|.+|.+.+.+...
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 167 CAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999886543
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=4e-34 Score=201.66 Aligned_cols=165 Identities=33% Similarity=0.633 Sum_probs=149.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.+|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887665 468999999999998766777888899999999999999999999999999999
Q ss_pred HHHHHH
Q 028792 166 AASIKN 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988763
No 36
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-34 Score=200.49 Aligned_cols=163 Identities=40% Similarity=0.716 Sum_probs=148.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999988888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN---KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
|+|++++.++..+..|+..+......+.|+++|+||+|+... ..+..++..+++...+++++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999888776667999999999998765 56777888899999999999999999999999999
Q ss_pred HHHHHH
Q 028792 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-34 Score=208.07 Aligned_cols=167 Identities=32% Similarity=0.510 Sum_probs=142.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999998887776677654443 44567777889999999999999888999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ .....++...++..++++++++||++|.|++++|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877766543 3689999999999875 45667788888889999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028792 164 AMAASIKNRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.++..
T Consensus 164 ~l~~~~~~~~~ 174 (199)
T 2gf0_A 164 ELLTLETRRNM 174 (199)
T ss_dssp HHHHHCSSSCE
T ss_pred HHHHHHhhhhc
Confidence 99987765443
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=206.11 Aligned_cols=171 Identities=27% Similarity=0.356 Sum_probs=143.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-hhhccccCCc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d 82 (203)
+.+..++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|...+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456789999999999999999999986544333445555566667778889889999999999987665 6777889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999988876653 47899999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028792 162 FMAMAASIKNRMA 174 (203)
Q Consensus 162 ~~~l~~~~~~~~~ 174 (203)
|.+|.+.+.+.+.
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999998865443
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=198.93 Aligned_cols=169 Identities=30% Similarity=0.431 Sum_probs=136.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--hchhhhccccCCcE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG 83 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 83 (203)
++.++|+++|++|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||... +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999988776543 3455566677778888888999999999887 56666778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3478999999999998877788888888998999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028792 163 MAMAASIKNRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
.+|.+.+..++..
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998776553
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.5e-33 Score=198.65 Aligned_cols=167 Identities=40% Similarity=0.709 Sum_probs=145.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999988888888888888888888889888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCCEEEEecCCCCCH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKSATNV 158 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 158 (203)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. ......+++.+++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 578999999999987 45667788888888 55689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
+++|.+|.+.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.8e-34 Score=204.48 Aligned_cols=168 Identities=33% Similarity=0.536 Sum_probs=147.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888777777887778888888776 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
+++|+|+++++++..+..|+..+..... ...| +++|+||+|+.+.+.+..++..+++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888866432 1345 899999999977667788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 161 AFMAMAASIKNR 172 (203)
Q Consensus 161 ~~~~l~~~~~~~ 172 (203)
+|.+|.+.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988543
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-33 Score=204.33 Aligned_cols=173 Identities=55% Similarity=0.996 Sum_probs=152.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..++..+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||++++.++..+..|+..+......+.|+++|+||+|+ .......++..+++..++++++++||++|.|++++|.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999888776667899999999999 4456677888889999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 028792 164 AMAASIKNRMASQP 177 (203)
Q Consensus 164 ~l~~~~~~~~~~~~ 177 (203)
+|.+.+.+......
T Consensus 175 ~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 175 TLAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhh
Confidence 99999887765443
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=5.3e-34 Score=209.53 Aligned_cols=173 Identities=43% Similarity=0.820 Sum_probs=151.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe----------EEEEEEEeCCChhhhch
Q 028792 3 NEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRT 72 (203)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~ 72 (203)
.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++++..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 35678899999999999999999999998887777778777777777777665 68899999999999999
Q ss_pred hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
.+..++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999999999998877755443 5789999999999987667788889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 152 AKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
|++|.|++++|.+|.+.+.++...
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876544
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.2e-33 Score=199.55 Aligned_cols=165 Identities=27% Similarity=0.369 Sum_probs=133.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch-hhhccccCCcEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIV 86 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (203)
.++|+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||+.++.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666666777778888899899999999999988766 66777889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 479999999999998777888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028792 166 AASIKNR 172 (203)
Q Consensus 166 ~~~~~~~ 172 (203)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=9.1e-34 Score=201.80 Aligned_cols=165 Identities=41% Similarity=0.709 Sum_probs=150.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888888888888888888888988899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.+|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666679999999999998777778888889999999999999999999999999999
Q ss_pred HHHHH
Q 028792 166 AASIK 170 (203)
Q Consensus 166 ~~~~~ 170 (203)
.+.+.
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 88653
No 46
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.3e-34 Score=208.63 Aligned_cols=184 Identities=29% Similarity=0.469 Sum_probs=153.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
..+..++|+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+||+||+..+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345789999999999999999999998888777777777666666665543 3488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
++++|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+....++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988777679999999999998777788888888988899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcc
Q 028792 163 MAMAASIKNRMASQPASNNARPPTV 187 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~ 187 (203)
.+|.+.+.+..........+..+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (218)
T 4djt_A 167 LHLARIFTGRPDLIFVSNVNLEPTE 191 (218)
T ss_dssp HHHHHHHHCCTTCCBCSCCCCCBCC
T ss_pred HHHHHHHhcccccccccccCcCCCc
Confidence 9999999888777665544443333
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2e-33 Score=202.23 Aligned_cols=166 Identities=44% Similarity=0.831 Sum_probs=146.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-hhhhccccCCcE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~ 83 (203)
..+.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||.+++. ..+..++..+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999988888888888888888888888888999999999999888 788889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC---CCHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA---TNVE 159 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~ 159 (203)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999887765 457999999999999777777888899999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 028792 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
++|.+|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 48
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=206.31 Aligned_cols=168 Identities=41% Similarity=0.721 Sum_probs=138.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999988877777888878888888889888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT------ANKVVSYETAKAFADEIGIPFMETSAKSATN 157 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..++...++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999998887766679999999999986 3456778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028792 158 VEQAFMAMAASIKN 171 (203)
Q Consensus 158 i~~~~~~l~~~~~~ 171 (203)
++++|.+|.+.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 49
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=6.1e-33 Score=200.51 Aligned_cols=168 Identities=26% Similarity=0.544 Sum_probs=146.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++.++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3457799999999999999999999998887777777766555 456678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcCCC-EEEEecCCCCCHH
Q 028792 84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN--KVVSYETAKAFADEIGIP-FMETSAKSATNVE 159 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 159 (203)
+++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. ..+..+++.+++..+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 56888777654 36899999999999753 567788999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028792 160 QAFMAMAASIKNRM 173 (203)
Q Consensus 160 ~~~~~l~~~~~~~~ 173 (203)
++|++|.+.+.++.
T Consensus 177 ~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 177 EVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887543
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1e-32 Score=200.40 Aligned_cols=165 Identities=35% Similarity=0.624 Sum_probs=146.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-----------------------------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKT----------------------------- 56 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 56 (203)
++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999998888888888878877777776655
Q ss_pred --------EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 57 --------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 57 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
..+.+||+||+..+...+..++..+|++++|+|++++.++..+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8899999999999999999999999999999999999999999999988876653 89999999999 555
Q ss_pred cccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 129 KVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
.....+++.+++...+++++++||++|.|++++|.+|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677888999999999999999999999999999999999887654
No 51
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9e-33 Score=198.26 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=141.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.....+||+|+|++|||||||+++|+++.+...+.++.. .....+.+++..+.+.+||++|++++. ++..+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 456789999999999999999999999888877766632 334777888988999999999987765 7788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHcC-CCEEEEecCCCCCHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEIG-IPFMETSAKSATNVE 159 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 159 (203)
+++|||+++++++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++..++ ++++++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999877653 468999999999994 456788889999999997 899999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028792 160 QAFMAMAASIKNRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|.+|.+.+.+.+.
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.2e-33 Score=195.05 Aligned_cols=163 Identities=30% Similarity=0.433 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||+++|.+...... .++.+.++ ...+..++..+.+.+||+||+.++...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665433 23333333 45667888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887653 35789999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 028792 167 ASIKNR 172 (203)
Q Consensus 167 ~~~~~~ 172 (203)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=204.51 Aligned_cols=169 Identities=27% Similarity=0.441 Sum_probs=143.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34679999999999999999999999988887777776655 55566667778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
++|||+++++++..+..|+..+..... .+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988866533 4689999999999988788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028792 164 AMAASIKNRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.+...
T Consensus 180 ~l~~~i~~~~~ 190 (201)
T 3oes_A 180 KVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 54
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=201.28 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=140.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+... ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999888877777777555 345667888899999999999888774 5688999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec-CCCCCHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KSATNVEQ 160 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~ 160 (203)
++|||+++++++..+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++..++++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999998876532 47899999999999777778889999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q 028792 161 AFMAMAASIK 170 (203)
Q Consensus 161 ~~~~l~~~~~ 170 (203)
+|.+|.+.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 55
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.1e-33 Score=205.21 Aligned_cols=170 Identities=26% Similarity=0.529 Sum_probs=144.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..++..+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999988888888877665 3556677778999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792 84 IIVVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 149 (203)
+|+|||+++++++.. +..|+..+..... +.|+++|+||+|+.+. +.+..++..+++..+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 6889998877753 7899999999999753 56888999999999999 9999
Q ss_pred EecCCCCC-HHHHHHHHHHHHHHHhcc
Q 028792 150 TSAKSATN-VEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 150 ~Sa~~~~g-i~~~~~~l~~~~~~~~~~ 175 (203)
+||++|.| ++++|.+|.+.+.+....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcC
Confidence 99999998 999999999998865543
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=9.5e-33 Score=197.83 Aligned_cols=169 Identities=37% Similarity=0.614 Sum_probs=147.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45679999999999999999999998888777666665444 34556788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+++.|++++|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999888876654 4789999999999987667788889999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028792 164 AMAASIKNRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.+++.
T Consensus 174 ~l~~~i~~~~~ 184 (187)
T 2a9k_A 174 DLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999887654
No 57
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9e-33 Score=194.52 Aligned_cols=164 Identities=38% Similarity=0.643 Sum_probs=141.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999998887777666665444 3455678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988876654 479999999999998766788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 028792 166 AASIKN 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998753
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.9e-33 Score=195.50 Aligned_cols=163 Identities=36% Similarity=0.634 Sum_probs=142.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777777765443 556677778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..+ +++++++||++|.|++++|.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988876653 357999999999999877777888889998887 789999999999999999999
Q ss_pred HHHHHH
Q 028792 165 MAASIK 170 (203)
Q Consensus 165 l~~~~~ 170 (203)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8.6e-33 Score=194.44 Aligned_cols=164 Identities=37% Similarity=0.607 Sum_probs=144.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++|+|||||+++|.++.+...+.++.+.. ....+..++....+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35899999999999999999999888877766666533 35667788888899999999999999889999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999998888766543 579999999999997767778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 028792 166 AASIKN 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988754
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-32 Score=196.57 Aligned_cols=165 Identities=32% Similarity=0.584 Sum_probs=143.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999888777777776544 4456677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792 84 IIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 149 (203)
+++|||+++++++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++..+++..+++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999987 68888877644 6899999999999764 35677888999999997 9999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+||++|+|++++|.+|.+.+.
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=198.74 Aligned_cols=170 Identities=31% Similarity=0.497 Sum_probs=138.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.....++|+++|.+|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++++...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999998887777767765444 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEE
Q 028792 84 IIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 149 (203)
+++|||+++++++..+. .|+..+..... +.|+++|+||+|+... ..+..++...++..++. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999987 68888877654 7899999999998753 45677888899988887 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 150 TSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
+||++|.|++++|.+|.+.+.+.+.+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999877653
No 62
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=7.5e-33 Score=201.94 Aligned_cols=169 Identities=31% Similarity=0.599 Sum_probs=142.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...++.++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 555667889999999999999999999999888877777776555 3456677778999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CC
Q 028792 81 AHGIIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IP 146 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~ 146 (203)
+|++++|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++.++++.++ ++
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999998 678888876643 6899999999999642 4567788889998887 69
Q ss_pred EEEEecC-CCCCHHHHHHHHHHHHHH
Q 028792 147 FMETSAK-SATNVEQAFMAMAASIKN 171 (203)
Q Consensus 147 ~~~~Sa~-~~~gi~~~~~~l~~~~~~ 171 (203)
++++||+ ++.|++++|.+|.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998764
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-32 Score=199.84 Aligned_cols=169 Identities=27% Similarity=0.385 Sum_probs=138.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchhhhccccC
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY--LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRG 80 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~ 80 (203)
..+..+||+++|.+|||||||+++|.+... ...+ ++++.++....+.+++..+.+.+||++|... +..+...++..
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999996433 3332 3455566667778889889999999999776 44556677889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
+|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988776542 2478999999999997766777888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028792 160 QAFMAMAASIKNRM 173 (203)
Q Consensus 160 ~~~~~l~~~~~~~~ 173 (203)
++|.+|.+.+..++
T Consensus 192 elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 192 ELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886544
No 64
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=214.35 Aligned_cols=170 Identities=89% Similarity=1.329 Sum_probs=143.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCC
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
+...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 44567889999999999999999999999888888778888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
|++++|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999997776668999999999999877777767788889999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028792 162 FMAMAASIKN 171 (203)
Q Consensus 162 ~~~l~~~~~~ 171 (203)
|.+|.+.+.+
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999876643
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.6e-33 Score=204.15 Aligned_cols=168 Identities=27% Similarity=0.507 Sum_probs=112.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEECCe--EEEEEEEeCCChhhhchhhhccccCC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
.+.++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||+..+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 777677777777777788888876 78999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHcCCCEEEEecCC-CC
Q 028792 82 HGIIVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTA-NKVVSYETAKAFADEIGIPFMETSAKS-AT 156 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 156 (203)
|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++.+++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999887765 5799999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028792 157 NVEQAFMAMAASIKNRM 173 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~ 173 (203)
|++++|.+|.+.+.+..
T Consensus 178 gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNY 194 (208)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3.1e-32 Score=194.07 Aligned_cols=163 Identities=24% Similarity=0.348 Sum_probs=136.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|++|+|||||+++|.++.+.. +.++.+.. ....+..++..+.+.+||+||+++ ..++.++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999988776 55666533 356677888889999999999875 35678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 159 (203)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999999998766655433 478999999999994 45567788888888876 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028792 160 QAFMAMAASIKNRMAS 175 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~ 175 (203)
++|.+|.+.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 67
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=197.64 Aligned_cols=166 Identities=33% Similarity=0.523 Sum_probs=145.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||... ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4679999999999999999999999888777777776544 45566788889999999999887 677888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC-CHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT-NVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~ 163 (203)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|. |++++|.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 99999999999999999888876543 578999999999998767788888999999999999999999999 9999999
Q ss_pred HHHHHHHHHh
Q 028792 164 AMAASIKNRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
+|.+.+.+++
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.4e-31 Score=192.55 Aligned_cols=169 Identities=34% Similarity=0.625 Sum_probs=134.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345679999999999999999999998887766666654333 4566678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++.+++...+++++++||++|.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999888876654 4689999999999876 5567788899999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028792 163 MAMAASIKNRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
.+|.+.+.+.+.
T Consensus 175 ~~l~~~~~~~~~ 186 (190)
T 3con_A 175 YTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 69
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.1e-32 Score=196.17 Aligned_cols=166 Identities=31% Similarity=0.598 Sum_probs=141.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 346789999999999999999999999888777777776555 3456677778999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CCEEE
Q 028792 84 IIVVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 149 (203)
+++|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++.+++..++ +++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 678888876643 6899999999999742 4577888899998888 68999
Q ss_pred EecC-CCCCHHHHHHHHHHHHHH
Q 028792 150 TSAK-SATNVEQAFMAMAASIKN 171 (203)
Q Consensus 150 ~Sa~-~~~gi~~~~~~l~~~~~~ 171 (203)
+||+ ++.|++++|.+|.+.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998763
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=6.5e-32 Score=193.41 Aligned_cols=163 Identities=29% Similarity=0.577 Sum_probs=141.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|++|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999998888777766665444 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++...+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888877654 7899999999998654 35677788889988887 999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~ 170 (203)
|++|.|++++|.+|.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999999875
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=198.05 Aligned_cols=167 Identities=32% Similarity=0.623 Sum_probs=123.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777666665433 455677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||+++++++..+. .|+..+.... .+.|+++|+||+|+.... .+..++..+++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999987 6888887654 368999999999997653 5667788899999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q 028792 152 AKSATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~~~~~ 174 (203)
|++|.|++++|.+|.+.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886543
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.1e-31 Score=193.64 Aligned_cols=163 Identities=31% Similarity=0.607 Sum_probs=142.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 56799999999999999999999998888777777766654 34667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||+++++++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 568877766543 6899999999999765 34677788889999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~ 170 (203)
|++|.|++++|.+|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.6e-31 Score=185.82 Aligned_cols=162 Identities=35% Similarity=0.628 Sum_probs=140.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEE
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 87 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.++|+++|++|+|||||+++|.+..+...+.++.... ....+..++..+.+.+||+||..++...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999888777666665533 345566788888999999999999888899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 88 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....++..+++..++++++++||++|.|++++|.+|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876654 4789999999999876 45667888899999999999999999999999999999
Q ss_pred HHHHH
Q 028792 167 ASIKN 171 (203)
Q Consensus 167 ~~~~~ 171 (203)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88753
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=192.57 Aligned_cols=163 Identities=33% Similarity=0.527 Sum_probs=140.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4589999999999999999999998877776676654443 445567777899999999999988888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 164 (203)
|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999988888887766542 46899999999999876777788888888889999999999999999999999
Q ss_pred HHHHHH
Q 028792 165 MAASIK 170 (203)
Q Consensus 165 l~~~~~ 170 (203)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988653
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-31 Score=193.95 Aligned_cols=165 Identities=31% Similarity=0.598 Sum_probs=136.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999988877776776655543 3667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 56888777654 36899999999999754 34667788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~~~ 172 (203)
|++|.|++++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=5.7e-32 Score=195.44 Aligned_cols=168 Identities=24% Similarity=0.323 Sum_probs=135.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------ccccceeeEEEEE-EECCeEEEEEEEeCCChhhhc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY-----------ISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 71 (203)
..++.+||+++|++|+|||||++.+.+.. ...+ .++.+.++....+ ..++..+.+.+||+||++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 45678999999999999999997666533 3332 2344444444334 456777899999999999999
Q ss_pred hhhhccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 028792 72 TITSSYYRGAHGIIVVYDVT------DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 145 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 145 (203)
..+..++..+|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+. ...+++.+++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 45667777777766632 2357999999999998754 778889999999998
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 146 -PFMETSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 146 -~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
+++++||++|.|++++|.+|.+.+.++..+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999877653
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2.2e-31 Score=192.80 Aligned_cols=165 Identities=17% Similarity=0.310 Sum_probs=129.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
+....++|+|+|.+|+|||||+++|.+..+.. .+.++.+ +....+...+ +.+.+||+||++++...+..++..+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 56678999999999999999999999998877 6677776 3334444444 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCcccCHHHHHH------HHHHcCCCEE
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS--------ENVNKLLVGNKCDLTANKVVSYETAKA------FADEIGIPFM 148 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~ 148 (203)
++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+..... .+++.+ ++...+++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEE
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEE
Confidence 99999999999999999888887754411 2689999999999976522 222221 1244667899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792 149 ETSAKSATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~ 174 (203)
++||++|.|++++|++|.+.+.++..
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887643
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=8.3e-31 Score=189.22 Aligned_cols=167 Identities=28% Similarity=0.399 Sum_probs=135.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-hchhhhccccCCc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH 82 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 82 (203)
+..++|+++|.+|||||||+++|.+.. +...+ ++++.++....+.+++..+.+.+||++|... +..+...++..+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999532 33332 3455566667778889889999999999765 4445667788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 161 (203)
++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776653 347899999999999766667777788888888899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028792 162 FMAMAASIKNRM 173 (203)
Q Consensus 162 ~~~l~~~~~~~~ 173 (203)
|.+|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=4.4e-32 Score=199.90 Aligned_cols=169 Identities=31% Similarity=0.578 Sum_probs=148.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
...+.++|+++|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 55678999999999999999999988777777777888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|||++++.++..+..|+..+..... +.|+++|+||+|+.+.... .+...++...+++++++||++|.|++++|.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887654 6899999999998754332 245667788899999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028792 164 AMAASIKNRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+......
T Consensus 168 ~l~~~l~~~~~~ 179 (221)
T 3gj0_A 168 WLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHTCTTC
T ss_pred HHHHHHHhCccc
Confidence 999998865443
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=4.7e-32 Score=193.60 Aligned_cols=163 Identities=33% Similarity=0.629 Sum_probs=126.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 46799999999999999999999988877666666654332 23445666678889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHcCC-CEEEEecC
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV----------VSYETAKAFADEIGI-PFMETSAK 153 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
+|+|+++++++..+. .|+..+..... +.|+++|+||+|+.+... +..++..+++..++. +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 58888877644 789999999999876544 367788889998896 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028792 154 SATNVEQAFMAMAASIK 170 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~~ 170 (203)
+|.|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=4.2e-31 Score=192.48 Aligned_cols=162 Identities=30% Similarity=0.575 Sum_probs=137.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777766664 344556667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------------cCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV------------VSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+..... +..++...++...++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 6888887765 4789999999999876543 677888889999886 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASI 169 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~ 169 (203)
|++|+|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.98 E-value=2.8e-30 Score=187.38 Aligned_cols=172 Identities=50% Similarity=0.820 Sum_probs=150.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 57899999999999999999999998887777788877888888889998899999999999998888888889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 165 (203)
+|+|+++..++..+..|+..+......+.|+++++||+|+.+......+++..++...++.++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888888887766555578999999999997766677788889999999999999999999999999999
Q ss_pred HHHHHHHhccCC
Q 028792 166 AASIKNRMASQP 177 (203)
Q Consensus 166 ~~~~~~~~~~~~ 177 (203)
.+.+.+......
T Consensus 163 ~~~~~~~~~~~~ 174 (199)
T 2f9l_A 163 LTEIYRIVSQKQ 174 (199)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHhhcc
Confidence 999887654443
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=184.97 Aligned_cols=161 Identities=19% Similarity=0.325 Sum_probs=129.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+ +....+..++ ..+.+||+||++++...+..++..+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4567999999999999999999999877 4555556655 4455566665 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSA 155 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 155 (203)
+++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.++.. ..+++++++||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999888888765533 47899999999999753 34555555553 23568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAASIKN 171 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~ 171 (203)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4.7e-31 Score=185.39 Aligned_cols=156 Identities=24% Similarity=0.415 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEE
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY 88 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|++|+|||||+++|.++.+.. +.+|.+ +....+..++ +.+.+||+||++++...+..++.++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 345554 3344444444 78999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHHHHH
Q 028792 89 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~ 162 (203)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888776543 2246899999999999654 22233322211 124579999999999999999
Q ss_pred HHHHHHHHH
Q 028792 163 MAMAASIKN 171 (203)
Q Consensus 163 ~~l~~~~~~ 171 (203)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987753
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.2e-29 Score=181.85 Aligned_cols=160 Identities=24% Similarity=0.431 Sum_probs=129.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|++|+|||||+++|.++. ...+.++.+ .....+..++ ..+.+||+||+.++...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999877 555666665 3344555555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888777554 22478999999999997642 3334333322 235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.9e-30 Score=181.79 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=126.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|++|+|||||+++|.++.+.. +.++.+ .....+.+++ ..+.+||+||+.++...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999877643 345554 3445555654 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..++... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999888877765432 24789999999999976422 2222222 22335689999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKN 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.1e-30 Score=187.83 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=128.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. .+...+ +.+.+||+||+.++...+..++..+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45799999999999999999999998887777777765544 344444 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..+++.+... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999988887775532 2578999999999997542 2233322221 224579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKN 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.3e-30 Score=185.85 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=121.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|||||||+++|.++.+. .+.+|.+.. ...+..++ +.+.+||+||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999987764 344555443 35566666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------cCCCE
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----------------IGIPF 147 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 147 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999888876542 24789999999999975 4566777776553 23579
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 028792 148 METSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
++|||++|+|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=3.3e-29 Score=180.67 Aligned_cols=166 Identities=53% Similarity=0.876 Sum_probs=148.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+++|++|||||||+++|.+..++..+.++.+.++....+.+++..+.+.+||++|..++...+..++..+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999988888888888888888888899988889999999998888888888899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHH
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 163 (203)
+++|+|+++..++..+..|+..+........|+++++||.|+.+......+.+..++...++.++++||+++.|++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888888877665555789999999999976666777888899999999999999999999999999
Q ss_pred HHHHHH
Q 028792 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.1e-29 Score=182.92 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=126.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+. ....+..++ +.+.+||+||+.++...+..++..+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34679999999999999999999987764 34455543 345666776 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCCEEEEec
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA 152 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 152 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.++... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999888876542 25789999999999975 4556666665442 3467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028792 153 KSATNVEQAFMAMAAS 168 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~ 168 (203)
++|+|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999753
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.4e-30 Score=188.01 Aligned_cols=158 Identities=22% Similarity=0.370 Sum_probs=119.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|..+.+.. +.+|.+ +....+..++ +.+.+||+||.+++...+..++..+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457999999999999999999999877653 345544 4444555555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988887765432 246899999999999654 22233322211 123569999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=182.33 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=125.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.++.+. .+.+|.+ +....+..++ ..+.+||+||++++...+..++..+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999987766 4455554 3344555665 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999888876542 247899999999999753 33444544432 235689999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKN 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (187)
T 1zj6_A 167 QGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987743
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=8.5e-30 Score=182.09 Aligned_cols=158 Identities=21% Similarity=0.326 Sum_probs=124.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
...+.++|+++|.+|+|||||+++|.+..+ ..+.++.+.. ...+..++ ..+.+||+||++++...+..++..+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445679999999999999999999998877 4444555533 34555565 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCC
Q 028792 84 IIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATN 157 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 157 (203)
+++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999988887775542 347899999999998653 33444444332 2345899999999999
Q ss_pred HHHHHHHHHHH
Q 028792 158 VEQAFMAMAAS 168 (203)
Q Consensus 158 i~~~~~~l~~~ 168 (203)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999763
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.3e-29 Score=179.95 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=124.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|++|||||||+++|.+..+. .+.++.+ +....+..++ +.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987543 3345555 3344555665 78999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|+|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776443 23578999999999997543 2333333221 224579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=3.5e-30 Score=185.21 Aligned_cols=160 Identities=20% Similarity=0.333 Sum_probs=126.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|..+.+.. +.+|.+ +....+..++ ..+.+||+||++++...+..++..+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877653 345554 3344555555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+.. ...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888877765542 2478999999999997542 223332221 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.9e-29 Score=178.12 Aligned_cols=160 Identities=23% Similarity=0.364 Sum_probs=124.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|+|||||+++|.++.+ ..+.++.+ +....+..++ ..+.+||+||..++...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 34445555 3344555555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888776543 357899999999998653 334444443322 23479999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 160 QAFMAMAASIKNR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.1e-28 Score=191.82 Aligned_cols=164 Identities=29% Similarity=0.573 Sum_probs=142.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.++.+...+.+++...+ ...+..++..+.+.+||+||.+.+...+..++..+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999998888777766665443 455677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+... +.+..++...++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 58887776654 7899999999998653 45678888999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~~~ 171 (203)
|++|.|++++|.+|.+.+..
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1e-29 Score=182.27 Aligned_cols=164 Identities=24% Similarity=0.428 Sum_probs=121.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCccccceeeEEEEEEE---CCeEEEEEEEeCCChhhhchhhhccccCCc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADD--SYLESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.++|+++|++|||||||+++|.+. .+...+.+|.+.++....+.. ++..+.+.+||++|++++...+..++..+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999984 444555677776665555433 234578999999999999888888999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCC----EEEEecCC
Q 028792 83 GIIVVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS---YETAKAFADEIGIP----FMETSAKS 154 (203)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 154 (203)
++++|+|++++ .++..+..|+..+..... +.|+++|+||+|+.+..... .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 578889999988866543 68999999999987543322 23344555556776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 028792 155 AT-NVEQAFMAMAASIKNR 172 (203)
Q Consensus 155 ~~-gi~~~~~~l~~~~~~~ 172 (203)
+. +++++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 96 9999999998877643
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2.9e-29 Score=181.56 Aligned_cols=161 Identities=20% Similarity=0.261 Sum_probs=120.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE--EEEEE-CCeEEEEEEEeCCChhhhchhh---hcc
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI--RTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSY 77 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~ 77 (203)
+..+.+||+++|.+|||||||++++.+... .. ++.+.++.. ....+ ++..+.+.+||+||++++.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 556789999999999999999998887533 22 333333332 22223 2556889999999999887766 789
Q ss_pred ccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHH----HcC
Q 028792 78 YRGAHGIIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-------KVVSYETAKAFAD----EIG 144 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~----~~~ 144 (203)
+..+|++|+|||++++ +++..+..|+..+.... .+.|+++|+||+|+.+. +.+..+...+++. ..+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 66666777776664433 47999999999998652 2344455667777 667
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 145 IPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 145 ~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
++++++||++ .|++++|..|++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998864
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.2e-31 Score=195.28 Aligned_cols=162 Identities=30% Similarity=0.598 Sum_probs=134.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998887766666654333 344556666788899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-CEEEEe
Q 028792 86 VVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+.. .+..++..+++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999887 68777765543 68999999999997543 4455667778888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028792 152 AKSATNVEQAFMAMAASI 169 (203)
Q Consensus 152 a~~~~gi~~~~~~l~~~~ 169 (203)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.7e-28 Score=174.45 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=123.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++ ..+.+||+||+.++...+...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45779999999999999999999999888777666666666666677777 5678999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CCEEEEecCCC
Q 028792 85 IVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKSA 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 155 (203)
++|+|++++..... +..+......+.|+++|+||+|+... ..+......... + ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999988432211 12222222346899999999998753 223333332222 1 47999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028792 156 TNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~~~ 174 (203)
.|++++|++|.+.+...+.
T Consensus 156 ~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhhhhhcc
Confidence 9999999999998876544
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=3.3e-28 Score=180.05 Aligned_cols=167 Identities=22% Similarity=0.183 Sum_probs=119.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh------hh---chhhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RF---RTITS 75 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~ 75 (203)
.+..++|+|+|.+|+|||||+++|++..+.....+..+.......+..++ ..+.+||+||.. +. ...+.
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 45679999999999999999999998876533333334444444444555 678999999983 21 11123
Q ss_pred ccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcC--CCEE
Q 028792 76 SYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE---TAKAFADEIG--IPFM 148 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 148 (203)
.++..+|++++|+|++++.++. ....|+..+.... .+.|+++|+||+|+.+.+.+..+ ...+++...+ ++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 4467889999999999987764 2234555444332 36899999999999876666544 4566777776 8999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhc
Q 028792 149 ETSAKSATNVEQAFMAMAASIKNRMA 174 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~ 174 (203)
++||++|.|++++|.+|.+.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876653
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=187.89 Aligned_cols=165 Identities=26% Similarity=0.404 Sum_probs=122.2
Q ss_pred CCceeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCCCcccc-ceeeEEEEE--------------EECCeE
Q 028792 4 EYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYLESYISTI-GVDFKIRTV--------------EQDGKT 56 (203)
Q Consensus 4 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 56 (203)
..++.+||+|+|.+ |||||||+++|.+ ..+...+.+++ +.++....+ ..++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45678999999999 9999999999998 55555555543 333322221 135566
Q ss_pred EEEEEEe-----------------------CCChhhhchhhhcccc---------------------CCcEEEEEEeCCC
Q 028792 57 IKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIVVYDVTD 92 (203)
Q Consensus 57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 92 (203)
+.+.+|| ++|++++..++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5566666666666666 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 93 Q--ESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 93 ~--~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
+ ++++.+..|+..+... ...+.|+++|+||+|+...+.+ ++..+++.. .+++++++||++|.|++++|.+|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 9999999999888665 3346899999999998654443 566677766 47899999999999999999999887
Q ss_pred HH
Q 028792 169 IK 170 (203)
Q Consensus 169 ~~ 170 (203)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4.7e-28 Score=170.61 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcccc--
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR-- 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 79 (203)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||+.++. .....++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776555555555555556666666 678999999987664 22344443
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.....+.. +..+++..++++++++||++|+|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 7999999999988654 3446555544 2689999999999864333332 3567778888999999999999999
Q ss_pred HHHHHHHHHH
Q 028792 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
++|.+|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.4e-27 Score=172.77 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=112.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe-EEEEEEEeCCChhhhch-hhhccccCCc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAH 82 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d 82 (203)
..+.++|+++|++|+|||||+++|.+..+...+.++ ...+. .+.+++. .+.+.+||+||+.++.. .+..++..+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 346799999999999999999999988877665433 33333 2555543 47899999999999887 7888899999
Q ss_pred EEEEEEeCCChh-hHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH---------------
Q 028792 83 GIIVVYDVTDQE-SFNNVKQ-WLNEIDRY--ASENVNKLLVGNKCDLTANKVVS--YETAKAFAD--------------- 141 (203)
Q Consensus 83 ~~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--------------- 141 (203)
++++|+|+++.. ++..... |...+... ...+.|+++|+||+|+....... .+.+.+...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 4555555 44334332 23468999999999997643211 111111111
Q ss_pred ------------------Hc--CCCEEEEecCCC------CCHHHHHHHHHHH
Q 028792 142 ------------------EI--GIPFMETSAKSA------TNVEQAFMAMAAS 168 (203)
Q Consensus 142 ------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~ 168 (203)
.+ ++++++|||++| .|++++|.+|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=8.6e-28 Score=196.48 Aligned_cols=166 Identities=22% Similarity=0.406 Sum_probs=125.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.+..+.. ..+|.+. ....+...+ +.+.+|||||++.+...+..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccce--eEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999887543 3455543 334444444 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...+++..... ..+++++++||++|+|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988887755432 57999999999998753 22333332221 123459999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 028792 160 QAFMAMAASIKNRMASQPA 178 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~ 178 (203)
++|++|.+.+.++....+.
T Consensus 473 ~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999988665554443
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4.3e-27 Score=181.26 Aligned_cols=159 Identities=22% Similarity=0.350 Sum_probs=125.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhh-----chhhhccc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY 78 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 78 (203)
..+||+++|.+|||||||+++|+++... ..+.+|.+..+. .+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4589999999999999999999976332 234455554444 344433 488999999999888 67788888
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHcC---CCE
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTA--NKV----VSYETAKAFADEIG---IPF 147 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 147 (203)
.++|++|+|||+++++++..+..|...+.... ..+.|+++|+||+|+.+ .+. ...+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554332 34699999999999976 333 45577888888887 789
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 028792 148 METSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+++||++ .++.++|..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999999887643
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=187.51 Aligned_cols=158 Identities=23% Similarity=0.382 Sum_probs=119.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+|+|.+|+|||||+++|.+..+... .+|.+.. ...+...+ +.+.+||+||++.+...+..++..+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998876543 2444433 33444454 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCCEEEEecCCCCCHHH
Q 028792 87 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 160 (203)
|||+++++++..+..++..+.... ..+.|+++|+||+|+.+.. ..+++...... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999888776664432 3478999999999997543 22333322221 235699999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 161 AFMAMAASIKN 171 (203)
Q Consensus 161 ~~~~l~~~~~~ 171 (203)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=170.75 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhchhhhcc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSSY 77 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 77 (203)
++|+++|++|+|||||+++|.+..+...+.++.+... ..+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999887766666554333 333333 578999999 56666667667
Q ss_pred ccC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCC
Q 028792 78 YRG-AHGIIVVYDVTDQESFNNV-KQWLNE---------IDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146 (203)
Q Consensus 78 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 146 (203)
+.. ++++++|+++.|..++..+ ..|... +......+.|+++|+||+|+.... .+...+++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 666 7766666666666677665 345431 222223478999999999987654 55677788888764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 028792 147 -------FMETSAKSATNVEQAFMAMAASIKNRMAS 175 (203)
Q Consensus 147 -------~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 175 (203)
++++||++|.|++++|++|.+.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988765543
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=5e-27 Score=169.33 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=108.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (203)
.+..++|+++|++|+|||||+++|.+..+...+.++.+.+........++ .+.+||+|| .+.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 45679999999999999999999998875554445544444444444444 588999999 66777777
Q ss_pred hccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCCEE
Q 028792 75 SSYYRGA---HGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIPFM 148 (203)
Q Consensus 75 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 148 (203)
..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+...... +++.+ +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777666 9999999999877665432 2222222 3689999999999976544322 22222 2222357899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 028792 149 ETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
++||++|.|++++|++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.7e-27 Score=169.07 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=122.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhccc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYY 78 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 78 (203)
..+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||...+. ..+..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34678999999999999999999998766555556666666666677766 778999999987664 2344455
Q ss_pred c--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 79 R--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 79 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
. .+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.....+. +...++++..+++++++||+++.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 3 5999999999875 3445566665544 368999999999986443333 34667788889999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028792 157 NVEQAFMAMAASIKNRM 173 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~~ 173 (203)
|++++|++|.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999876543
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.8e-26 Score=173.54 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=119.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh------hhccc-
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY- 78 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~- 78 (203)
.+.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998776544455555555555555555 78999999998766542 24444
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792 79 -RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN 157 (203)
Q Consensus 79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
..+|++++|+|+++.++.. .|...+.. .+.|+++++||+|+.....+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876533 34444433 3689999999999865433332 36778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.7e-26 Score=161.45 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh-------hchhhhccccC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG 80 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (203)
++|+++|++|+|||||+++|.+.... ....++.+.+.....+..++ ..+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 23334444455566666666 4788999999876 34455667899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCCHH
Q 028792 81 AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 159 (203)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. ++..+++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998544322 112222222 368999999999986542 2334444 5676 89999999999999
Q ss_pred HHHHHHHHHH
Q 028792 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=5.5e-27 Score=166.28 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hhcc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
..++|+++|.+|+|||||+++|.+.... ....++.+.++....+..++ ..+.+||+||..++... ....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987643 22234445556667777777 45889999997543211 1134
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCC
Q 028792 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
+..+|++++|+|++++.++. ...|+..+......+.|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999888765 34666666665555789999999999854211 11122457899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
++++|.+|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988663
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.9e-25 Score=171.02 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=125.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEEC-CeEEEEEEEeCCChhhhc----------
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFR---------- 71 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~---------- 71 (203)
+.+..-.|+++|.+|||||||+|+|++..+... ..+.++.......+..+ + ..+.+|||||.....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 455678899999999999999999999877532 22333333333444444 4 789999999975433
Q ss_pred hhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEE
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFME 149 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (203)
.....++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+........+....+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4556678899999999999998887777666766655 368999999999997445555666777777775 78999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+||++|.|++++|++|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999987753
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=8.6e-27 Score=178.63 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=115.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch---hhhccccCCcE
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG 83 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 83 (203)
||+++|..|||||||++++.++..+. ...+|.+.++.. + + ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999888664433 245666655542 2 2 347899999999999864 35788999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----cCCCEEEE
Q 028792 84 IIVVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN-------KVVSYETAKAFADE----IGIPFMET 150 (203)
Q Consensus 84 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 150 (203)
+|+|||++++ +++..+..|+..+.... .+.|+++++||+|+... +.+..++..++++. +++.+++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 33333344444444433 47999999999999764 24555566677765 57899999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028792 151 SAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~gi~~~~~~l~~~~~ 170 (203)
||++ .++.++|..+.+.+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSS
T ss_pred ccCC-CcHHHHHHHHHHHHH
Confidence 9998 599999999987654
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.2e-26 Score=191.07 Aligned_cols=164 Identities=20% Similarity=0.308 Sum_probs=124.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE------E--EECCeEEEEEEEeCCChhhhchhhhc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT------V--EQDGKTIKLQIWDTAGQERFRTITSS 76 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~ 76 (203)
....+||+++|.+|||||||+++|.+..+...+.++.+.++.... + ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999998887777777776665442 1 12233578999999999999998889
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
++..+|++++|+|+++.+ .+..|+..+..... +.|+++|+||+|+.....+..++..+++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998654 45678777777654 68999999999998877788888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAASIKNR 172 (203)
Q Consensus 157 gi~~~~~~l~~~~~~~ 172 (203)
|++++|.+|.+.+.+.
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1.7e-26 Score=173.48 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------hhhccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY 78 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 78 (203)
.+|+++|.+|+|||||+|+|.+........++.+.+.....+..++ ..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998876555566777677777777777 4789999999876543 345556
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCC
Q 028792 79 --RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSAT 156 (203)
Q Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
..+|++++|+|+++.++...+..+ + ...+.|+++|+||+|+........ ....+.+.++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 889999999999987654433332 2 233789999999999864332211 2445777789999999999999
Q ss_pred CHHHHHHHHHHH
Q 028792 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 gi~~~~~~l~~~ 168 (203)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.6e-25 Score=161.21 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=111.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (203)
+.+..++|+++|++|+|||||+++|++.... ...++.+.+........+. .+.+||+|| ...+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 3456789999999999999999999987733 2233433333333333333 477999999 5566666
Q ss_pred hhccccCC---cEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC-C
Q 028792 74 TSSYYRGA---HGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYETAKAFADEIG-I 145 (203)
Q Consensus 74 ~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~-~ 145 (203)
+..++..+ |++++|+|+++..+.. .+..|+. .. +.|+++|+||+|+.+... ...++..+++...+ +
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 66666555 9999999998754322 2223332 22 689999999999875432 23344555666544 7
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 146 PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+++++||++|.|++++|++|.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999998774
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=3.7e-26 Score=172.83 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------hhhhcccc-
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (203)
+.++|+++|++|+|||||+++|.+........+..+.+. ....+.. ...+.+||+||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998764444334443333 3333343 4678999999987764 33444554
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 80 -GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 80 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
.+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+.....+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886654 334444443 368999999999986433333 3456778888999999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
+++|.+|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.6e-25 Score=169.68 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=120.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch------hhhccc--
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY-- 78 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 78 (203)
+.++|+++|++|+|||||+++|.+........++.+.+.....+..++ ..+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998877555566677677777777777 5689999999876654 344444
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+|++++|+|+++.+. ...+...+.... ..|+++++||+|+.+......+ ...+.+.++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 78999999999988542 233333333331 2899999999997643333322 66778888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKNR 172 (203)
Q Consensus 159 ~~~~~~l~~~~~~~ 172 (203)
+++|.++.+.+.+.
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=5.9e-26 Score=172.23 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=115.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhch----------hhhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSS 76 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 76 (203)
+.++|+++|.+|+|||||+|+|.+........++++.+.....+...+ ..+.+||+||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 358999999999999999999998876555556666666666666666 4678999999876552 1222
Q ss_pred c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792 77 Y--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS 154 (203)
Q Consensus 77 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
+ ...+|++++|+|+++.+....+..+ +... +.|+++|+||+|+.+..... .....+.+.++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 2 2789999999999986654443333 3332 68999999999986433221 124567778899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIK 170 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~ 170 (203)
|.|++++|.+|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999876553
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=4.3e-25 Score=162.51 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=107.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCh----------hhhchh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQ----------ERFRTI 73 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~ 73 (203)
....++|+|+|.+|+|||||+++|++.........+.+.+......... .....+.+|||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3467899999999999999999999876322222222222222233333 22367889999993 344445
Q ss_pred hhccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH------
Q 028792 74 TSSYYRG---AHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS--YETAKAFADE------ 142 (203)
Q Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~------ 142 (203)
...++.. +|++++|+|+++..+. ....++..+.. .+.|+++|+||+|+....... .+.+.+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 5555544 8899999999875432 12334444433 368999999999987643321 1222233333
Q ss_pred -cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 143 -IGIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 143 -~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
.+++++++||++|.|++++|++|.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 457899999999999999999999887543
No 124
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=9.6e-24 Score=165.76 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=121.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc---------hhhhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 76 (203)
...++|+++|.+|+|||||+++|.+........+..+.......+..++ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998764333223333334444444444 678999999974321 11223
Q ss_pred cccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792 77 YYRGAHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS 154 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+.....+ ++..+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999999877 67777788887766544 6899999999998754332 445666677789999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~~ 172 (203)
|+|++++|++|.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.3e-24 Score=174.95 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=117.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCh----------hhhchhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTIT 74 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 74 (203)
+..++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++ ..+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999987653 33345555555556667777 45889999997 3333333
Q ss_pred h-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCCEE
Q 028792 75 S-SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FADE----IGIPFM 148 (203)
Q Consensus 75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~ 148 (203)
. ..+..+|++++|+|++++.++... .|...+.. .+.|+++|+||+|+.+......++..+ +... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467889999999999998776654 35544433 368999999999998655443333322 2222 357999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792 149 ETSAKSATNVEQAFMAMAASIKNRMASQ 176 (203)
Q Consensus 149 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 176 (203)
++||++|.|++++|..+.+.+.++..+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999888765443
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.4e-24 Score=174.16 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY 78 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 78 (203)
.++|+++|.+|+|||||+|+|.+.... ....++++.+.....+..++ ..+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 478999999999999999999987532 33345555666667777777 678999999987655433 3367
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+....... ..++......+++++||++|+|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999877654333333333332 68999999999997654432 23344332478999999999999
Q ss_pred HHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIK 170 (203)
Q Consensus 159 ~~~~~~l~~~~~ 170 (203)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-25 Score=164.11 Aligned_cols=145 Identities=19% Similarity=0.293 Sum_probs=105.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
...+.++|+++|++|+|||||+++|.+..+... +.++.+..+ ....+.+||+||++.+...+..++..
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 355779999999999999999999998776542 333333222 23568899999999988888888776
Q ss_pred ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHcCC
Q 028792 81 ----AHGIIVVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTANKVVS------YETAKAFADEIGI 145 (203)
Q Consensus 81 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~ 145 (203)
+|++++|+|++ +++++..+..|+..+... ...+.|+++|+||+|+....... .+++..++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888988888888777554 33579999999999998765433 3456667777778
Q ss_pred CEEEEecCCCCC
Q 028792 146 PFMETSAKSATN 157 (203)
Q Consensus 146 ~~~~~Sa~~~~g 157 (203)
.++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998764
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=3.6e-24 Score=173.22 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=122.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------hhhhchh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI 73 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (203)
.+..++|+++|.+|+|||||+++|.+... .....++++.+.....+..++ ..+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 34579999999999999999999997653 233344555555556666777 4789999999 4555554
Q ss_pred hh-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCCE
Q 028792 74 TS-SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPF 147 (203)
Q Consensus 74 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 147 (203)
.. .++..+|++++|+|+++..+ .....|...+.. .+.|+++|+||+|+.+.+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 43 36789999999999987543 222334444433 36899999999999876666666666666554 5899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028792 148 METSAKSATNVEQAFMAMAASIKNRMASQP 177 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~ 177 (203)
+++||++|.|++++|.++.+.+.++..+.+
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999998887765544
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1.1e-23 Score=161.63 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=108.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChhh--------hchhhhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSS 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 76 (203)
-+..+|+++|.+|+|||||+|+|++..+... ..+.++.......+..++ .++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4567899999999999999999998877532 223333232223333444 7899999999765 3445566
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-C-CCEEEEecC
Q 028792 77 YYRGAHGIIVVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-G-IPFMETSAK 153 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 153 (203)
.+..+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... +.+....+ + .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence 789999999999998765433 2333 3444332 36899999999998754330 22222322 3 579999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028792 154 SATNVEQAFMAMAASIK 170 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~~ 170 (203)
+|.|+++++++|.+.+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987653
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.2e-23 Score=169.48 Aligned_cols=178 Identities=20% Similarity=0.265 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYY 78 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 78 (203)
.+|+++|.||||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987653 23345566666677777777 4678999999653 334456678
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHcCC-CEEEEecCC
Q 028792 79 RGAHGIIVVYDVTDQESFNN--VKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA-KAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 154 (203)
..+|++++|+|+.+..+..+ +..| +.. .++|+++|+||+|+... . ..+. .++. .++. +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~---l~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADF---LRK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHH---HHH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHH---HHH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987554332 2222 222 26899999999997431 1 1222 3443 4566 799999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCccccCCCCCCCCC
Q 028792 155 ATNVEQAFMAMAASIKNRMAS-QPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
|.|+++++++|.+.+.+.... ..........+....+.++.+||
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKS 194 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKS 194 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHH
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHH
Confidence 999999999999988754211 01001233455666666666554
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=2.9e-24 Score=167.07 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhccc---cCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYY---RGA 81 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 81 (203)
.+|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999976543222232333333444555432 4689999999643 233334444 459
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCC
Q 028792 82 HGIIVVYDVTD---QESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKS 154 (203)
Q Consensus 82 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 154 (203)
|++++|+|+++ ++++..+..|+..+..+.. .+.|+++|+||+|+.... +...++.+.+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7888889899998887653 478999999999986432 34556666666 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIKN 171 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~ 171 (203)
++|+++++.+|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998854
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.1e-23 Score=168.81 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChh-hhch--------hhhccc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSYY 78 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~ 78 (203)
++|+++|.||+|||||+|+|.+.... ....++++.++....+.+++ ..+.+|||||.. .+.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 89999999999999999999987542 33345556666677777777 678999999987 5432 223567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+|++++|+|++++.++.... +++.+ .+.|+++|+||+|+.+. ...+++.++.. .+++++++||++|+|+
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL 392 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence 8999999999999887765432 22222 26899999999999653 34445544432 4478999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
++++++|.+.+..
T Consensus 393 ~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 393 EKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997664
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2.6e-24 Score=171.35 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=115.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh-------hh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS 75 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 75 (203)
+....++|+|+|..|+|||||+++|++..+. ....+.++.+.....+...+. ..+.+|||||+..+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 4567799999999999999999999987763 233344555566666666553 27899999998776544 34
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSA 155 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.++..+|++++|+|+...+ ....|+..+... +.|+++|+||+|+...... +...++.+.++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 4778999999999994332 234565555544 6899999999999866544 5566666777899999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028792 156 TNVEQAFMAMAASIKNR 172 (203)
Q Consensus 156 ~gi~~~~~~l~~~~~~~ 172 (203)
.|++++|++|.+.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGD 197 (423)
T ss_dssp TSTTTHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999999988544
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=148.02 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=109.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECCeEEEEEEEeCCCh-----------hhhc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----------ERFR 71 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~ 71 (203)
.+..++|+|+|.+|+|||||+++|++........+ +.+.......+.+++ ..+.+|||||. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 45679999999999999999999998877655444 445555556666666 57899999993 2344
Q ss_pred hhhhccccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHc
Q 028792 72 TITSSYYRGAHGIIVVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS------YETAKAFADEI 143 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~ 143 (203)
..+...+..+|++++|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.+..+.+..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 444555678899999999875433 12222222222111 135999999999987654332 23577788888
Q ss_pred CCCEEEEecCCC-----CCHHHHHHHHHHHHHHH
Q 028792 144 GIPFMETSAKSA-----TNVEQAFMAMAASIKNR 172 (203)
Q Consensus 144 ~~~~~~~Sa~~~-----~gi~~~~~~l~~~~~~~ 172 (203)
+..++.++...+ .++.++|..+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 888888887754 68889998888777553
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=2.6e-22 Score=162.93 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=111.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------YLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY 78 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 78 (203)
...++|+++|..++|||||+++|.+.. ...+..+.++.+.....+..++ ..+.+||+||++.+.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 456999999999999999999999766 2233333344444444455565 6899999999999988888889
Q ss_pred cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCCEEE
Q 028792 79 RGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFME 149 (203)
Q Consensus 79 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~ 149 (203)
..+|++++|+|+++ +++.+.+. .+.. .+.|+++++||+|+.+.... ..+++.+++... ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999987 44433222 2222 25788999999999753211 233455555555 578999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+||++|+|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998775
No 136
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=5.7e-23 Score=165.58 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=103.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh--------hccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY 78 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 78 (203)
.++|+++|++|+|||||+|+|.+.... ....++++.++....+.+++ ..+.+|||||...+...+ ...+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 478999999999999999999976543 23334555555555666777 668999999976544332 2357
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCH
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
..+|++++|+|++++.+... ..++..+. ..|+++|+||+|+....... ....+. ...+++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 88999999999998766443 33443332 36999999999997654432 111111 3568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028792 159 EQAFMAMAASIKN 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
++++++|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.7e-21 Score=152.88 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh---------hchhhhccccC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYRG 80 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 80 (203)
.|+++|++|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|... +...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998776443344445556667777877 5678999999621 22222 24688
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHc---CCCEEEEecCC
Q 028792 81 AHGIIVVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEI---GIPFMETSAKS 154 (203)
Q Consensus 81 ~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~ 154 (203)
+|++++|+|++++. ....+..+...+......+.|+++|+||+|+.+.... ..+.+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 4555555666665554457899999999998754311 012232333444 24689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIKN 171 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~ 171 (203)
+.|+++++++|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999987764
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=3.9e-22 Score=150.14 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=107.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCccc-cceeeEEEEEEECCeEEEEEEEeCCChhhhchh---------
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YLESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------- 73 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------- 73 (203)
....++|+|+|.+|+|||||+++|++.. +.....++ ++.......+..++ ..+.+|||||...+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3467999999999999999999999876 33333343 44445555566666 67899999997654221
Q ss_pred --hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEe-CCCCCCCcccCH-------HHHHHHHH
Q 028792 74 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGN-KCDLTANKVVSY-------ETAKAFAD 141 (203)
Q Consensus 74 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~~ 141 (203)
....+..+|++++|+|+++..... ..++..+...... ..|.++++| |+|+.... +.. +++..+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 223568899999999998622211 1122223222111 356677776 99987432 111 22444555
Q ss_pred HcCCCE-----EEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 142 EIGIPF-----METSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 142 ~~~~~~-----~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
..+..+ +++||++|.|++++|.+|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 555432 7899999999999999999988764
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.6e-21 Score=155.66 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=103.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQI 61 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 61 (203)
...++|+++|..++|||||+++|.+.. +.....+ |+...+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356999999999999999999998543 3333334 3333333333221 1 1 1368999
Q ss_pred EeCCChhhhchhhhccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHH
Q 028792 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYET 135 (203)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~ 135 (203)
||+||++.|.......+..+|++++|+|+++. ++.+.+. .+... ...|+++++||+|+.+... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999999888777788899999999999853 3433332 22222 1258999999999976543 23455
Q ss_pred HHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 136 AKAFADE---IGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 136 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+.+++.. .+++++++||++|+|+++++++|.+.+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 6666654 357899999999999999999998755
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.3e-23 Score=167.61 Aligned_cols=177 Identities=19% Similarity=0.157 Sum_probs=110.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChh--------hhchhhhccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYY 78 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 78 (203)
..+|+++|.+|||||||+|+|.+..... ...+..+.+.....+.+++ ..+.+|||||.. ++...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 3689999999999999999999876542 2223333333334444444 578999999975 5666677788
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCCCCC
Q 028792 79 RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATN 157 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 157 (203)
..+|++++|+|+.++.+.... .+...+. ..+.|+++|+||+|+..... +..++. .++. +++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 999999999999886654331 2222232 34789999999999865321 111222 3454 799999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 158 VEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
++++++++.+.+.+.. .........+....+.++.+||
T Consensus 152 v~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~~nvGKS 189 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKS 189 (436)
T ss_dssp HHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECSTTSSHH
T ss_pred hHHHHHHHHHhcCccc---cccccccCcEEEEEcCCCCCHH
Confidence 9999999988775321 1112234455666666666654
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=2.7e-21 Score=154.07 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=114.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE---------EE-------EEE---CCeEEEEEEEeC
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI---------RT-------VEQ---DGKTIKLQIWDT 64 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------~~-------~~~---~~~~~~~~i~D~ 64 (203)
.....++|+++|.+++|||||+++|.+........... ..... .. ... ......+.+||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34567999999999999999999999754332110000 00000 00 000 112267999999
Q ss_pred CChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH
Q 028792 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADE 142 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~ 142 (203)
||+..+.......+..+|++++|+|+++..++.....++..+.... ..|+++++||+|+.+.... ..+++.++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888889999999999999998766666677766555443 2589999999998754322 11223333322
Q ss_pred c---CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 143 I---GIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 143 ~---~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
. +++++++||++|+|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2 578999999999999999999987653
No 142
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=4.8e-22 Score=155.07 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=102.3
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCc
Q 028792 47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SENVN 115 (203)
Q Consensus 47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p 115 (203)
...+..++ +.+++||++|+++++..|..++.+++++|||+|+++ ..++.+...|+..+.... ..+.|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 889999999999999999999999999999999998 467888888888876542 24689
Q ss_pred EEEEEeCCCCCCCc---------------ccCHHHHHHHHH-----------HcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 116 KLLVGNKCDLTANK---------------VVSYETAKAFAD-----------EIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 116 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+++++||.|+.... ..+.+++..++. ..++.+++|||+++.|+.++|.++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985322 256778888776 3457899999999999999999999988
Q ss_pred HHHh
Q 028792 170 KNRM 173 (203)
Q Consensus 170 ~~~~ 173 (203)
.+..
T Consensus 343 ~~~~ 346 (353)
T 1cip_A 343 IKNN 346 (353)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7543
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1.4e-21 Score=157.32 Aligned_cols=165 Identities=22% Similarity=0.228 Sum_probs=110.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhh----------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT---------- 74 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 74 (203)
+..++|+++|++|||||||+|+|.+.... ....++++.+.....+.+++. .+.+||++|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987642 222344444555566777774 67899999974432211
Q ss_pred --hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHH----HcCCCE
Q 028792 75 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-FAD----EIGIPF 147 (203)
Q Consensus 75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~ 147 (203)
...+..+|++++|+|+++..+.... .+...+. ..+.|+++++||+|+.+......++..+ +.. ...+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2345779999999999876554432 1222222 2368999999999997655444443332 222 235799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 028792 148 METSAKSATNVEQAFMAMAASIKNRMASQ 176 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 176 (203)
+++||++|.|++++|+.+.+.+.++..+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999998887765443
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=1.1e-22 Score=154.24 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=93.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CC-------ccccceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------- 69 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (203)
....++|+++|.+|+|||||+|+|++..... .+ .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 4567999999999999999999988655433 22 45555566656665666667999999999621
Q ss_pred hchhh-------hccc-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 70 FRTIT-------SSYY-------------RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 70 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
+.... ..++ ..+|+++++++.+.......-..++..+. . +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT---T-TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh---c-cCCEEEEEeccCCCCHH
Confidence 22221 1111 33789999998765321111122333332 2 68999999999986543
Q ss_pred ccC--HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 130 VVS--YETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
+.. .+.+.+.....+++++++||.+++|+++++.+|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 321 1334555667789999999999999999999987654
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=9.9e-22 Score=162.48 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCChh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~ 68 (203)
+..+|+|+|+.++|||||+++|+... ... +.....+.......+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998521 110 00111122222222322 4556899999999999
Q ss_pred hhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---
Q 028792 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--- 145 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 145 (203)
.+...+...+..+|++|+|+|+++..+......|...+. .+.|+++++||+|+.... ..+...++...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888889999999999999998766666666655442 368999999999997643 22334556666665
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 146 PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.++++||++|.|+++++++|.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999988764
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.7e-21 Score=155.65 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=111.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YLESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ 60 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 60 (203)
....++|+++|+.++|||||+++|.+.. ...+..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 3333334 3333333333211 1 1 136799
Q ss_pred EEeCCChhhhchhhhccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHH
Q 028792 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV--VSYE 134 (203)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~ 134 (203)
+||+||+..|.......+..+|++|+|+|+++. ++.+.+. .+.... ..|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999888777778899999999999853 3433332 222222 258899999999876432 1233
Q ss_pred HHHHHHHH---cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 135 TAKAFADE---IGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 135 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
++.++... .+++++++||++|+|+++++++|.+.+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 45555543 3578999999999999999999987553
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=9.3e-22 Score=158.15 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=106.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEEC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQD 53 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (203)
....++|+++|.+++|||||+++|+.... ..+..+.++.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34569999999999999999999964311 11122344555555555555
Q ss_pred CeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028792 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK 129 (203)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~ 129 (203)
+ ..+.+||+||+.+|.......+..+|++++|+|+++... |+...++...+......+.| +++++||+|+....
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 5 689999999999998888888999999999999987532 21111222222222223566 89999999985321
Q ss_pred --c----cCHHHHHHHHHHcC------CCEEEEecCCCCCHHHHHH
Q 028792 130 --V----VSYETAKAFADEIG------IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 130 --~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 163 (203)
. ...+++..++...+ ++++++||++|+|++++++
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 11233444554444 5799999999999999766
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2e-21 Score=160.39 Aligned_cols=160 Identities=22% Similarity=0.282 Sum_probs=113.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------CCccccceeeEEEEEEE---CCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD--SYLE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g 66 (203)
.++..+|+++|+.++|||||+++|+.. .... +....++.......+.+ ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999752 1110 00111111111122222 45568899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI- 145 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~- 145 (203)
+..+...+...+..+|++++|+|+++..+......|..... .+.|+++++||+|+.... ..+...++....++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 99998888888999999999999998777666666655432 368999999999987543 12334555566665
Q ss_pred --CEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 146 --PFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 146 --~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4999999999999999999988664
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=2.9e-21 Score=148.28 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=107.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CccccceeeEEEEEEECCeEEEEEEEeCCChh---------hhchhhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITS 75 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 75 (203)
-+..+|+++|++|+|||||+++|++...... ..+..+.......+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3456899999999999999999998765421 222222222223334444 678999999986 2333445
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-CEEEEecCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKS 154 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
..+..+|++++|+|+++ -+ ....++.. .....+.|+++++||+|+........+.+.++...++. .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLN--KLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHH--HHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 67889999999999976 22 22223222 22234689999999999875322223444555555665 699999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028792 155 ATNVEQAFMAMAASIK 170 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~ 170 (203)
+.|++++++++...+.
T Consensus 159 g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999987653
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=6.6e-24 Score=173.14 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=115.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++++|||||+++|.+..+.....++++.++....+..++. ..+.+|||||+..|..++...+..+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 45689999999999999999999976665555555555555544444221 36889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHH---HHHc--CCCEEEEecCCCCCHH
Q 028792 86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAF---ADEI--GIPFMETSAKSATNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 159 (203)
+|+|+++..... +...+......+.|+++++||+|+....... ..+...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~q----t~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQ----TVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHH----HHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHH----HHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999865432 2233333334478999999999986532211 1112111 1111 2479999999999999
Q ss_pred HHHHHHHHHHH
Q 028792 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
++|++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999987654
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=8.5e-21 Score=141.80 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=107.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--cceeeEEEEEEECCeEEEEEEEeCCCh--------hhhchhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 74 (203)
....++|+++|.+|+|||||+|+|++........++ ++.......+..++ ..+.+|||||. ..+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 346799999999999999999999988765543333 33334445555666 67899999995 2222222
Q ss_pred hcc----ccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHc
Q 028792 75 SSY----YRGAHGIIVVYDVTDQESF-NNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV------SYETAKAFADEI 143 (203)
Q Consensus 75 ~~~----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~ 143 (203)
... ...+|++++|+|+++.... ..+..++..+......+.|+++++||.|+...... ..+.+..+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 3899999999999853211 11222333322211125799999999998653211 113467777788
Q ss_pred CCCEEEEecCC-----CCCHHHHHHHHHHHHHHH
Q 028792 144 GIPFMETSAKS-----ATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 144 ~~~~~~~Sa~~-----~~gi~~~~~~l~~~~~~~ 172 (203)
+..++.+++.. +.|+.+++..+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888777665 579999999998887653
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.9e-22 Score=163.09 Aligned_cols=182 Identities=19% Similarity=0.126 Sum_probs=109.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC--------hhhhchhhh
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITS 75 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~ 75 (203)
......+|+++|.+|||||||+|+|.+...... ..+.+.+..............+.+||||| +.++.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 344568999999999999999999998765422 12233333333333333346789999999 667777788
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CCEEEEecCC
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKS 154 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
.++..+|+++||+|+.+..+.. ..++..+. ...+.|+++|+||+|+.+.. ....++. ..+ ..++++||++
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l--~~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAA--DEEVAKIL--YRTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHH--HHHHHHHH--TTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCCCChH--HHHHHHHH--HHcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence 8899999999999987643322 22222222 22478999999999986431 1111222 223 3678999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCCC
Q 028792 155 ATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS 198 (203)
Q Consensus 155 ~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
|.|+.++++++.+.+.... .........+....+.+..+||
T Consensus 169 g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~ivG~~~vGKS 209 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKS 209 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSC---SSCCCTTCEEEEEECSTTSSHH
T ss_pred ccchHHHHHHHHhhccccc---ccccccccceeEEecCCCCCHH
Confidence 9999999999987654321 1112234445555555555544
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.3e-21 Score=159.29 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCCccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------LESYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (203)
..++|+++|.+++|||||+++|+.... .....+.++.+.....+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 469999999999999999999975411 11111223333333344443
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN------VKQWLNEIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
...+.+||+||+.+|.......+..+|++++|+|+++...... ....+..+... ...|+++++||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 3789999999999999989999999999999999998643321 12222222222 125699999999997643
Q ss_pred ccCHHHH----HHHHHHc-----CCCEEEEecCCCCCHHHH
Q 028792 130 VVSYETA----KAFADEI-----GIPFMETSAKSATNVEQA 161 (203)
Q Consensus 130 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~~ 161 (203)
....+++ ..+.... +++++++||++|+|++++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3333333 3333333 357999999999999853
No 154
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=5.9e-21 Score=147.03 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=101.4
Q ss_pred eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CC
Q 028792 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-EN 113 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~ 113 (203)
+....+..++ +.+++||++|+++++..|..++.+++++|||+|++ +.+++.+...|+..+..... .+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 3444455555 88999999999999999999999999999999665 56778888888777755432 47
Q ss_pred CcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH----------HcCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD----------EIGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 114 ~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
.|+++++||+|+.+.+ ..+.+++.+++. ..++.+++|||+++.||+.+|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999986432 356777777743 34567899999999999999999999
Q ss_pred HHHHHh
Q 028792 168 SIKNRM 173 (203)
Q Consensus 168 ~~~~~~ 173 (203)
.+.+..
T Consensus 315 ~Il~~~ 320 (327)
T 3ohm_A 315 TILQLN 320 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998653
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=157.79 Aligned_cols=162 Identities=22% Similarity=0.337 Sum_probs=89.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCc--------cccceeeEEEEEEECCeEEEEEEEeCCCh-------hh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (203)
+..++|+|+|++|+|||||+++|++.... ..+. ++.+.......+..++..+.+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998764332 2221 33333333333444565678999999998 55
Q ss_pred hchhhh-------ccccC-------------CcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 70 FRTITS-------SYYRG-------------AHGIIVVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
+..++. .++.. +|+++|+++.. ..++..+. .++..+ ..+.|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555443 33322 24555555542 23333333 233222 347899999999999765
Q ss_pred cccCH--HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 129 KVVSY--ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
.++.. +.+.+++..++++++++||+++.+ ++.|.++.+.+.+..
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 54433 456677777789999999999999 999999998887543
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=4.9e-21 Score=156.68 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=84.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC------------------CCC----CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS------------------YLE----SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+..+|+|+|.+|+|||||+++|+... ... ...+.++.......+.+.+ ..+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 456899999999999999999996211 000 0012223333444555555 7899999
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
|||+..+...+...+..+|++++|+|+++.........|. .+. ..+.|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence 9999999998999999999999999999866654444432 222 336899999999998643
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-21 Score=140.37 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=86.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccC-
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG- 80 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 80 (203)
..+.++|+++|++|||||||+++|.+..+... ..++.+..+ ....+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 45679999999999999999999998775442 222222111 23568899999998887777666655
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCc
Q 028792 81 ---AHGIIVVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~ 129 (203)
+|++++|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999888887776543 23479999999999997654
No 158
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=5.5e-21 Score=149.09 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=93.6
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYA-SENVNKLLVGNKC 123 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~ 123 (203)
..+.+++||++|+++++..|..++.+++++|||||++ +.+++.+...|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788999999888876543 2478999999999
Q ss_pred CCCCCcc--c-------------------CHHHHHHHHHH----------------cCCCEEEEecCCCCCHHHHHHHHH
Q 028792 124 DLTANKV--V-------------------SYETAKAFADE----------------IGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 124 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
|+.+.+. . +.+++..++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 14556666432 123468999999999999999999
Q ss_pred HHHHHHh
Q 028792 167 ASIKNRM 173 (203)
Q Consensus 167 ~~~~~~~ 173 (203)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=4.8e-21 Score=150.68 Aligned_cols=147 Identities=7% Similarity=0.076 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEe
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|.+++|||||+++|+ ...++.+.....+..++ ..+.+||+||+.+|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 12222233334444444 569999999999987777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHcC---CCEEE--EecCC---CCC
Q 028792 90 VTDQESFNNVKQWLNEIDRYASENVNK-LLVGN-KCDLTANKVVSY--ETAKAFADEIG---IPFME--TSAKS---ATN 157 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~g 157 (203)
++ ..+....+++..+... +.|. ++++| |+|+ +...... +++.+++...+ +++++ +||++ ++|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3334445555444433 5676 88899 9998 4322221 44555554443 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 028792 158 VEQAFMAMAASIKNR 172 (203)
Q Consensus 158 i~~~~~~l~~~~~~~ 172 (203)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887643
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.6e-20 Score=155.38 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=107.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCChhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 69 (203)
.+.++|+++|++++|||||+++|.+...........+.+.....+..+ .....+++|||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 456899999999999999999998654322111011111111111110 0112589999999999
Q ss_pred hchhhhccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------------H
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-------------Y 133 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~ 133 (203)
|...+...+..+|++|+|+|+++ ++++..+.. +.. .+.|+++++||+|+....... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99988888999999999999998 666544432 222 368999999999986422100 0
Q ss_pred ---H-------HHHHHHHHc---------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 134 ---E-------TAKAFADEI---------------GIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 134 ---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
+ +........ .++++++||++|.|+++++++|...+....
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 111111111 137999999999999999999998776443
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=7.7e-21 Score=152.81 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=104.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCC--CCC----------Cc---------------------cccceeeEEEEEE
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--LES----------YI---------------------STIGVDFKIRTVE 51 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~----------~~---------------------~~~~~~~~~~~~~ 51 (203)
....++|+++|.+++|||||+++|+.... ... .. ..++.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34569999999999999999999985431 000 00 1112222222333
Q ss_pred ECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.++ ..+.+||+||+.+|...+...+..+|++|+|+|+++... .....++..+... ...|+++++||+|+.+....
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 333 678999999999998888888999999999999987542 2223333333322 12368999999999763211
Q ss_pred ----CHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHHH
Q 028792 132 ----SYETAKAFADEIG-----IPFMETSAKSATNVEQAFMA 164 (203)
Q Consensus 132 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~ 164 (203)
..++..++++.++ ++++++||++|.|+++++..
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1244556666666 67999999999999986543
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=9.7e-22 Score=158.04 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=103.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------CccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD--SYLES-----------------------------YISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (203)
..++|+++|++++|||||+++|+.. .+... ..+.++.+.....+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 5689999999999999999999864 22211 012223233333333333
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHH----HHhhcCCC-CcEEEEEeCCCCCCCc-
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE----IDRYASEN-VNKLLVGNKCDLTANK- 129 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----l~~~~~~~-~p~iiv~nK~D~~~~~- 129 (203)
..+.+||+||+.+|...+...+..+|++|+|+|+++ .+|+.+..|... +......+ .|+++++||+|+.+..
T Consensus 84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 679999999999998888889999999999999998 566644322211 11111123 4689999999987621
Q ss_pred -----ccCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHHHH
Q 028792 130 -----VVSYETAKAFADEIG-----IPFMETSAKSATNVEQAFM 163 (203)
Q Consensus 130 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 163 (203)
....+++.+++...+ ++++++||++|+|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666766665 6799999999999987654
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5e-21 Score=159.17 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=103.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------ccccceeeEEEEEEECCe
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESY-------------------------------ISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (203)
..++|+++|.+++|||||+++|++....... .+.++.+.....+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 4689999999999999999999865321111 12233333334444444
Q ss_pred EEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCccc
Q 028792 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~-~p~iiv~nK~D~~~~~~~ 131 (203)
..+.+|||||+.++.......+..+|++|+|+|+++.. ++....++...+......+ .|+++|+||+|+.+....
T Consensus 245 -~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 245 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp -CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred -ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 67899999999999888888999999999999998742 1111112222222222223 458999999999764322
Q ss_pred CHH----HHHHHHHHcC-----CCEEEEecCCCCCHHHHH
Q 028792 132 SYE----TAKAFADEIG-----IPFMETSAKSATNVEQAF 162 (203)
Q Consensus 132 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 162 (203)
..+ ++..++...+ ++++++||++|.|+.++.
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 222 3334444443 589999999999998763
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=7.5e-21 Score=151.66 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=101.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCC--C-----ccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD--------SYLES--Y-----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
....++|+++|++++|||||+++|.+. .+... . ....+.++......++.....+.+||+||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345699999999999999999999862 11110 0 00112222222333333336789999999999
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC-
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG- 144 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~- 144 (203)
|.......+..+|++|+|+|+++... .....++..+... +.| +++++||+|+...... ..+++.+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 88888888899999999999987643 2334444444332 577 8899999998753211 1234556666655
Q ss_pred ----CCEEEEecCCCCC
Q 028792 145 ----IPFMETSAKSATN 157 (203)
Q Consensus 145 ----~~~~~~Sa~~~~g 157 (203)
++++++||++|.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6899999999987
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1.6e-21 Score=157.96 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=92.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------CCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE-----------------------------SYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|..++|||||+++|+. +.+.. +....++.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3568999999999999999999974 21110 0011222222223444444
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc-
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK- 129 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~- 129 (203)
..+.+||+||+..|.......+..+|++|+|+|+++.. +|+...++...+......+.| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 67899999999999888888889999999999999752 333222333333222223576 89999999985421
Q ss_pred -----ccCHHHHHHHHHHc-------CCCEEEEecCCCCCHHHHH
Q 028792 130 -----VVSYETAKAFADEI-------GIPFMETSAKSATNVEQAF 162 (203)
Q Consensus 130 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~ 162 (203)
....+++.+++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455666655 3569999999999998876
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=2.7e-20 Score=148.00 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=105.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YLES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
.++|+++|++++|||||+++|.+.. +... .....+.+.......+......+.+||+||+.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998631 1100 0001122222222333333367899999999998888
Q ss_pred hhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC-----
Q 028792 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG----- 144 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 144 (203)
....+..+|++|+|+|+++...... ..++..+.. .+.| +++++||+|+.+.... ..+++.+++...+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 8888999999999999998543222 222233332 2577 6899999998753211 1235566666665
Q ss_pred CCEEEEecCCCCC----------HHHHHHHHHHHH
Q 028792 145 IPFMETSAKSATN----------VEQAFMAMAASI 169 (203)
Q Consensus 145 ~~~~~~Sa~~~~g----------i~~~~~~l~~~~ 169 (203)
++++++||++|.| +.++++.|.+.+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 677777766544
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=9.1e-23 Score=165.20 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=107.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++..+|+++|++++|||||+++|....+.....++++.+.....+..++ ..+++|||||+..|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987554433333333333333344444 46889999999999999888999999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHH--HHHHHHHHcC--CCEEEEecCCCC
Q 028792 86 VVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK--VVSYE--TAKAFADEIG--IPFMETSAKSAT 156 (203)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~ 156 (203)
+|+|+++ +++.+.+ ..+. ..+.|+++++||+|+.... .+..+ +...+...++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999987 3443322 1122 2368999999999986431 11100 0000112222 689999999999
Q ss_pred CHHHHHHHHHH
Q 028792 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 gi~~~~~~l~~ 167 (203)
|++++|++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999999864
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=6.8e-20 Score=141.62 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=97.5
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCc
Q 028792 47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLNEIDRYAS-ENVN 115 (203)
Q Consensus 47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p 115 (203)
...+..++ +.+++||++|+++++..|..++.+++++|||+|++ +.+++.+...|+..+..... .+.|
T Consensus 153 ~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 153 EYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp EEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred EEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Confidence 33444444 78999999999999999999999999999999998 67888888888887765433 5789
Q ss_pred EEEEEeCCCCCCCc---------------ccCHHHHHHHHHH---------------------------cCCCEEEEecC
Q 028792 116 KLLVGNKCDLTANK---------------VVSYETAKAFADE---------------------------IGIPFMETSAK 153 (203)
Q Consensus 116 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~ 153 (203)
+++++||+|+...+ ..+.+++.+++.. ..+.+++|||+
T Consensus 231 iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~ 310 (340)
T 4fid_A 231 KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNAT 310 (340)
T ss_dssp EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTT
T ss_pred EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEee
Confidence 99999999985321 1245555554432 13678999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028792 154 SATNVEQAFMAMAASIKN 171 (203)
Q Consensus 154 ~~~gi~~~~~~l~~~~~~ 171 (203)
++.+|+.+|..+.+.+.+
T Consensus 311 dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 311 DGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999999999887
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=6e-21 Score=154.19 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=102.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------CccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYLES-----------------------------YISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|.+++|||||+++|++. .+... ....++.+.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999853 11110 011223333333444444
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN---NVKQWLNEIDRYASENVN-KLLVGNKCDLTA 127 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~ 127 (203)
..+.+||+||+.+|.......+..+|++|+|+|+++.. +|+ .....+..+.. .+.| +++++||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 67999999999999888888899999999999998753 221 22222222222 2455 899999999874
Q ss_pred Ccc----cCHHHHHHHHHHcC-----CCEEEEecCCCCCHHHH
Q 028792 128 NKV----VSYETAKAFADEIG-----IPFMETSAKSATNVEQA 161 (203)
Q Consensus 128 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 161 (203)
... ...+++.+++...+ ++++++||++|+|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11234555656555 68999999999999754
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=132.07 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=97.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----------hchhhhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSS 76 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 76 (203)
.-.+|+++|++|+|||||+++|.+..+.....++.+.......+..++ .+.+||+||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457899999999999999999998764333334444333333333333 467999999632 2222223
Q ss_pred cc---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcC--CCEEE
Q 028792 77 YY---RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IPFME 149 (203)
Q Consensus 77 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~ 149 (203)
++ ..++++++++|++++.+.... .....+. ..+.|+++++||+|+.+.... ..+.+..++...+ +.+++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 33 568999999999876554321 1111121 136899999999998653221 1234455555444 56889
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 028792 150 TSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
+||+++.|+++++++|.+.+.
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC
T ss_pred EeecCCCCHHHHHHHHHHHHh
Confidence 999999999999999988653
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=2.3e-20 Score=143.04 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=101.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------ccc----------------------ccee------------
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY------IST----------------------IGVD------------ 44 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~----------------------~~~~------------ 44 (203)
....++|+|+|.+|+|||||+++|++..+.+.. .++ .+.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999988764221 121 0000
Q ss_pred -------e----EEEEEEECCeEEEEEEEeCCChh-------------hhchhhhccccCCcEEE-EEEeCCChhhHHHH
Q 028792 45 -------F----KIRTVEQDGKTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-VVYDVTDQESFNNV 99 (203)
Q Consensus 45 -------~----~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 99 (203)
+ ....+... ....+.+|||||.. .+......++..++.++ +|+|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 00000001 02568999999953 33445566777887666 79999875443332
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--cC-CCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 100 KQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE--IG-IPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 100 ~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
..++..+ ...+.|+++|+||+|+.+......+.+...... .+ .+++++||++|.|+++++++|.+..
T Consensus 182 ~~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 182 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 2333333 334789999999999976543222222210001 12 3678999999999999999998743
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=3.5e-19 Score=154.36 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=104.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------CCccccceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-------YLE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
....++|+++|++++|||||+++|.+.. +.. ....+.+.++....+.++.....+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456999999999999999999998631 000 00112222222222233333467899999999999
Q ss_pred chhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC--
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-- 144 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 144 (203)
.......+..+|++|+|+|+++.... ....++..+... +.| +++++||+|+.+.... ..+++.+++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888889999999999999875322 223343333332 577 7899999999753221 1245566666665
Q ss_pred ---CCEEEEecCCC--------CCHHHHHHHHHHH
Q 028792 145 ---IPFMETSAKSA--------TNVEQAFMAMAAS 168 (203)
Q Consensus 145 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~ 168 (203)
++++++||++| .|+.++++.|.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 68999999999 3566666666553
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=6.5e-19 Score=140.01 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh----hchhhhc---cccCCc
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGAH 82 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d 82 (203)
.|+++|++|||||||+++|.+........+..+.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987643211112222223333444443 24688999999632 1112222 245799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 83 GIIVVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
.+++++|++ ...+..+..+...+..+.. ...|.++++||+|+... ...+.+.+.....+++++.+||++++|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5566777777666655432 24789999999998653 223444555555678999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028792 161 AFMAMAASIKNRMA 174 (203)
Q Consensus 161 ~~~~l~~~~~~~~~ 174 (203)
++.+|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876543
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.8e-18 Score=130.26 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccc------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY------ 78 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~------ 78 (203)
...++|+++|.+|+|||||+++|++..... ...+..+.......+..++ ..+.+|||||+..+......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 457999999999999999999999877532 2223333344445555666 6899999999876544333322
Q ss_pred ---cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCcccC
Q 028792 79 ---RGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 79 ---~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~ 132 (203)
..+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 2789999999987644 3332 35666665543322 4899999999986544433
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=4.7e-21 Score=158.90 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCccccceeeEEEEEEECC
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|.+++|||||+++|+... ......+.++.+.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456899999999999999999996321 0111122333333333444433
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SF---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTA 127 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~ 127 (203)
..+.+|||||+..|.......+..+|++|+|+|+++.. .+ ......+..+.. .+.| +|+|+||+|+.+
T Consensus 255 --~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 255 --KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred --eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 67899999999999888888889999999999998532 11 011222222222 2455 899999999875
Q ss_pred CcccC----HHHHHHHH-HHcCC-----CEEEEecCCCCCHH
Q 028792 128 NKVVS----YETAKAFA-DEIGI-----PFMETSAKSATNVE 159 (203)
Q Consensus 128 ~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 159 (203)
..... .+++..+. ...+. +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 32211 12333444 33443 69999999999998
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.5e-18 Score=146.43 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=107.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCC-Ccccccee------------e----------------------------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVD------------F---------------------------- 45 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~------------~---------------------------- 45 (203)
..++|+|+|.+|+|||||+|+|++....+. ..+++... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998775432 22322100 0
Q ss_pred -------------EEEEEEECCeE--EEEEEEeCCChhh---hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028792 46 -------------KIRTVEQDGKT--IKLQIWDTAGQER---FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEID 107 (203)
Q Consensus 46 -------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 107 (203)
....+..+... ..+.+|||||... .......++..+|+++||+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111000 2488999999654 33455667899999999999998877766655544432
Q ss_pred hhcCCCCcEEEEEeCCCCCCCcccCHH----------HHHH-----HHHH--------cCCCEEEEecC-----------
Q 028792 108 RYASENVNKLLVGNKCDLTANKVVSYE----------TAKA-----FADE--------IGIPFMETSAK----------- 153 (203)
Q Consensus 108 ~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------- 153 (203)
..+.|+++|+||+|+......+.+ .+.. +... ...+++++||+
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 236789999999998644311110 1111 1111 12479999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHH
Q 028792 154 ---SATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 154 ---~~~gi~~~~~~l~~~~~~~ 172 (203)
++.|+++++.+|.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877653
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=1.5e-19 Score=142.18 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=106.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEE---------------------------------------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKI--------------------------------------- 47 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 47 (203)
...+|+|+|++|||||||+++|.+..+.+......+.....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999977633222111100000
Q ss_pred -------------EEEE-ECCeEEEEEEEeCCChhhh-------------chhhhccccCCcEEEEEEeCCChhhHHHHH
Q 028792 48 -------------RTVE-QDGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 100 (203)
Q Consensus 48 -------------~~~~-~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (203)
..+. .......+.+||+||..++ ......++..+|++|+|+|..+.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 0011135889999997664 445667789999999999876433211 3
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHH
Q 028792 101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
.|+..+......+.|+++|+||+|+.+......+....+...++.+|++++++.+.++++.+.++....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 344445555556789999999999986555444444444445678899999999998887766654433
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=3.2e-18 Score=144.38 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=85.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcC--CC------CC----------CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792 2 NNEYDYLFKLLLIGDSGVGKSCLLLRFADD--SY------LE----------SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
..+.++..+|+|+|.+|+|||||+++|+.. .+ .. ......+.......+.+.+ ..+++||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 345577899999999999999999999831 11 00 0011222223333444554 7899999
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
|||+..+...+...+..+|++++|+|+++..+......|.. +.. .+.|+++++||+|+...
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 99999888888889999999999999998777665555543 222 36899999999998653
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=5.8e-18 Score=138.68 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------------CCccccceeeEEEEEEECCeEEEEEEEe
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+..+|+|+|++|+|||||+++|+... ... ......+.......+...+ ..+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 457899999999999999999998531 100 0011111122223344444 7899999
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
|||+..+.......+..+|++|+|+|+++.... ....++. .....+.|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~---~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLME---VTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHH---HHTTTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHH---HHHHcCCCEEEEEcCcCCccc
Confidence 999999888888889999999999999875431 1122222 223347899999999998653
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.5e-18 Score=145.78 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=80.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------ccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.+...+|+|+|+.|+|||||+++|++....... ...++.......+... .+.+++||+||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 355689999999999999999999843221000 0112222222333334 37899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
+..+.......+..+|++++|+|+++..... ...++..+.. .+.|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 9998888888999999999999987654322 2233333333 368999999999986
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2e-19 Score=137.90 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=86.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC-CCCCCC--------ccccceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADD-SYLESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------E 68 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 68 (203)
.+..++|+++|++|+|||||+++|.+. .++... .++.........+...+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999999875 333222 112111111222223444578999999997 3
Q ss_pred hhchhhh-------ccc-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 69 RFRTITS-------SYY-------------RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 69 ~~~~~~~-------~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
.+..... .++ ..+++++|+.+.+.. +++... ...+.... ...++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 3333332 222 223456666654321 222222 12233333 35799999999998764
Q ss_pred ccc--CHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 129 KVV--SYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
.++ ..+++.+++..++++++++||+++ |++++|.++.+.+.+.
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 433 245677888899999999999999 9999999999988643
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.2e-18 Score=132.13 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=69.3
Q ss_pred EEEEEEeCCChhh-------------hchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028792 57 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNK 122 (203)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK 122 (203)
..+.+|||||... +......++..+|++++|+|..+.. .-.....+. ......+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~---~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLA---KEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHH---HHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHH---HHhCCCCCcEEEEEcC
Confidence 4689999999643 4445566789999999999974322 101111222 2223347899999999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCCCEEEEecCC------CCCHHHHHHHHHHHHHH
Q 028792 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKS------ATNVEQAFMAMAASIKN 171 (203)
Q Consensus 123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~~~~~l~~~~~~ 171 (203)
+|+........+.+.......+..++++++.. +.|+.+++..+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99876543222222211111225677766554 78899999988877753
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=9.8e-19 Score=138.59 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRT--VE-------------------QDG-KTIKLQIWDTAG 66 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g 66 (203)
++|+++|.||+|||||+|+|.+........+..+.+..... +. +++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632222222222222221 11 122 247799999999
Q ss_pred hhh----hchhhh---ccccCCcEEEEEEeCCCh
Q 028792 67 QER----FRTITS---SYYRGAHGIIVVYDVTDQ 93 (203)
Q Consensus 67 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 93 (203)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346889999999999875
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=2e-17 Score=125.06 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=81.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhh-------c-
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------S- 76 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~- 76 (203)
...++|+++|.+|+|||||+++|++..+.. ...+..+.......+..++ ..+.+|||||...+..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999877532 2122222223333344444 7799999999765432211 1
Q ss_pred -cccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCcccCHH
Q 028792 77 -YYRGAHGIIVVYDVTDQESFNNV-KQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 77 -~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~~~ 134 (203)
....+|+++||+|++.. ++... ..|+..+......+ .|+++|+||+|+........+
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 13479999999998653 23322 35666665443322 699999999998765443333
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.75 E-value=5.7e-18 Score=132.54 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=96.0
Q ss_pred eEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCC
Q 028792 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SEN 113 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~ 113 (203)
+....+..++ +.+++||++|+++++..|..++.+++++|||+|+++ ..++.+...|+..+.... ..+
T Consensus 191 i~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 191 IHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp EEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 3344555655 889999999999999999999999999999999998 678999888888876542 246
Q ss_pred CcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH-----------HcCCCEEEEecCCCCCHHHHHHHHH
Q 028792 114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD-----------EIGIPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 114 ~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
.|+++++||.|+.... ..+.+++..++. ..++.+++|||+++.|++++|.++.
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 8999999999985321 256677777652 3357889999999999999999999
Q ss_pred HHHHHHhc
Q 028792 167 ASIKNRMA 174 (203)
Q Consensus 167 ~~~~~~~~ 174 (203)
+.+.+..-
T Consensus 349 ~~i~~~~l 356 (362)
T 1zcb_A 349 DTILHDNL 356 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=135.01 Aligned_cols=159 Identities=17% Similarity=0.245 Sum_probs=80.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-------ccccceeeEEEEEEECCeEEEEEEEeCCChhhhc------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-ESY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------ 71 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------ 71 (203)
+..++|+|+|++|+|||||++.|.+..++ +.. .++.........+...+....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45688999999999999999999987653 211 1122111111112223334578999999965431
Q ss_pred -h------------------hhhccccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 72 -T------------------ITSSYYRGAHGIIVVYDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 72 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
. +...++.++++.+++|+.... .+++... .|+..+. .+.|+|+|+||+|+....+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 1 112344455543444443322 2333332 3544442 2689999999999876555
Q ss_pred cCH--HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHH
Q 028792 131 VSY--ETAKAFADEIGIPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
+.. +.+.+++..++++++++|++++.++.++|..|...
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 443 56777888889999999999999999888777654
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=6.2e-17 Score=136.58 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=84.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------C-----CccccceeeEEEEEEECCeEEEEEEEeCCC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYLE-----------S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.++..+|+|+|.+|+|||||+++|+. +.+.. . ..+.++.......+.+++ ..+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 45679999999999999999999984 22110 0 011222222333445555 7899999999
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
+..+...+...+..+|++++|+|+++..+......|.. +.. .+.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 99888888888999999999999998766555544443 332 36899999999998653
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=2.5e-18 Score=131.89 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=107.0
Q ss_pred HHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChh-hHHHHH
Q 028792 23 CLLLRFADDSYL-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVK 100 (203)
Q Consensus 23 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 100 (203)
+|+.++..+.+. ..+.||++..+. ..+..++ .+.+||+ ++++..++..++.++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 778888884443 3322222 6889999 8889999999999999999999999987 688888
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CCEEEEecCCCCCHHHHHHHHH
Q 028792 101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKSATNVEQAFMAMA 166 (203)
Q Consensus 101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~ 166 (203)
.|+..+.. .+.|+++|+||+|+.+...+ ++..+++..++ ++++++||++|.|++++|.++.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 36899999999999754332 45667777777 8999999999999999999864
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.73 E-value=3.2e-17 Score=129.41 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=99.7
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCc
Q 028792 47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLNEIDRYA-SENVN 115 (203)
Q Consensus 47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p 115 (203)
...+.+++ +.+++||++|+++++..|..++.+++++|||||+++ ..+|.+...|+..+.... ..+.|
T Consensus 209 ~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 209 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred EEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 34555665 889999999999999999999999999999999999 889999999998887653 35789
Q ss_pred EEEEEeCCCCCCCcc---c---------------------------CHHHHHHHH-----HH--------cCCCEEEEec
Q 028792 116 KLLVGNKCDLTANKV---V---------------------------SYETAKAFA-----DE--------IGIPFMETSA 152 (203)
Q Consensus 116 ~iiv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa 152 (203)
++||+||.|+...+. . ..+++..|+ .. ..+.+++|||
T Consensus 287 iiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA 366 (402)
T 1azs_C 287 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCA 366 (402)
T ss_dssp EEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCT
T ss_pred EEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEe
Confidence 999999999853221 1 134455553 22 2456789999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 028792 153 KSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 153 ~~~~gi~~~~~~l~~~~~~~~ 173 (203)
+++.||+++|.++.+.+.+..
T Consensus 367 ~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 367 VDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCHHHHHHHHHHHHHHHH
Confidence 999999999999998887553
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=1.7e-16 Score=134.03 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=82.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCC--CCCC----------------CccccceeeEEEEEEEC-----CeEEEEE
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS--YLES----------------YISTIGVDFKIRTVEQD-----GKTIKLQ 60 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~ 60 (203)
+.++..+|+|+|..++|||||+++|+... +... ....++.......+.+. +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34677999999999999999999997421 1100 01112222222233332 2347899
Q ss_pred EEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
+|||||+..|...+...+..+|++|+|+|+++.........|. .+. ..+.|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence 9999999988888888999999999999999865543333332 222 23689999999999864
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=1.3e-17 Score=122.25 Aligned_cols=156 Identities=20% Similarity=0.195 Sum_probs=94.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccccee--------------eEEEEEEE----------------CCeE
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVD--------------FKIRTVEQ----------------DGKT 56 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 56 (203)
...+|+++|.+|+|||||+++|............+..+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998542111100000000 00011111 0112
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 136 (203)
..+.+||++|.... ...+....+.+++|+|+.+.... ...+... . +.|.++|+||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 46789999984110 01111256889999998765321 1111111 1 368899999999864323455666
Q ss_pred HHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 028792 137 KAFADEI--GIPFMETSAKSATNVEQAFMAMAASIKNRM 173 (203)
Q Consensus 137 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 173 (203)
.++.... +++++++||++|.|++++|++|.+.+..+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666554 378999999999999999999998775543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=5.8e-16 Score=120.71 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=91.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhhc-
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR- 71 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 71 (203)
.++|+++|.||+|||||+|+|.+........+..+.+.....+.+++. ...+.+||+||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999986643332332222222233444432 1568999999976543
Q ss_pred ---hhh---hccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q 028792 72 ---TIT---SSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEI----------------------------- 106 (203)
Q Consensus 72 ---~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l----------------------------- 106 (203)
.+. ...++.+|++++|+|+++. +.+.++..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 222 2346899999999999852 2222222111111
Q ss_pred -----------H-------------------hh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEecCC
Q 028792 107 -----------D-------------------RY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKS 154 (203)
Q Consensus 107 -----------~-------------------~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
. .+ ....+|+++++|+.|..-......+.+.+++...+++++++||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 01 112489999999998642112335667788888899999999653
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=1.1e-15 Score=125.74 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=82.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC----------------------CCCCCCccccceeeEEEEEEECCeEEEEEEEe
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD----------------------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+.=+|+|+|..++|||||..+|+.. ..+.+....++.......+.+++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 35678999999999999999999621 01122233444444555666776 7899999
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
|||+..|.......+.-+|++|+|+|+.+.-.......| ..... .+.|.++++||+|....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence 999999999999999999999999999865432222333 22333 36899999999997543
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=1.2e-17 Score=130.86 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=93.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc------cccc--------------------eee--------------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYI------STIG--------------------VDF-------------- 45 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------~~~~--------------------~~~-------------- 45 (203)
...++|+|+|.+|+|||||+++|++..+.+... |+.. .++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999887642211 1100 000
Q ss_pred ---------EEEEEEEC-CeEEEEEEEeCCChh-------------hhchhhhccccCC-cEEEEEEeCCChhhHHHHHH
Q 028792 46 ---------KIRTVEQD-GKTIKLQIWDTAGQE-------------RFRTITSSYYRGA-HGIIVVYDVTDQESFNNVKQ 101 (203)
Q Consensus 46 ---------~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~ 101 (203)
....+.+. .....+.+|||||.. .+..+...++... +++++|+|++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 00001110 012568999999953 2334455556555 45555667654222111
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHcC-CCEEEEecCCCCCHHHHHHHHHH
Q 028792 102 WLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA--FADEIG-IPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 102 ~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
+...+......+.|+++|+||+|+.+......+.... +....+ .+++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222333444578999999999987543321221110 000112 35678999999999999999876
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=7e-17 Score=126.60 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=69.1
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 136 (203)
+.+.++||||... .....+..+|++++|+|....+.+..+.. ...+.|.++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 5788999999432 22334588999999999876544321111 01135889999999985432211 111
Q ss_pred HHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 137 KAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 137 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
.++... ++.+++++||++|+|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221 25789999999999999999999988765
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.4e-18 Score=127.89 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=93.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeE------------EEEEEEC-CeE-----------------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFK------------IRTVEQD-GKT----------------- 56 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 56 (203)
+.++|+|+|.+|||||||+++|....+...+.+++..++. ...+..+ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976544333334333322 1122221 110
Q ss_pred --EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH
Q 028792 57 --IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 57 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 134 (203)
..+.++|++|.-.. ...+-...+..+.++|+....... ......+ ..|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 13455566552110 011112344566777753211100 0000111 3678999999998654334566
Q ss_pred HHHHHHHHc--CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 135 TAKAFADEI--GIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 135 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
+..+++... +++++++||++|.|++++|.+|.+.+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 677766654 57899999999999999999999887643
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.7e-15 Score=114.67 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=102.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhc-------hhhhcccc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYR 79 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 79 (203)
-..+|+++|.||||||||+|+|.+........+.++.+.....+.+++ .++.++|+||..... ......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999998765555557777778888888888 678899999954221 11223467
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCC--------cccCHHHHHHHHHHcCCCEEE
Q 028792 80 GAHGIIVVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTAN--------KVVSYETAKAFADEIGIPFME 149 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~~p~iiv~nK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~ 149 (203)
.+|++++|+|++++..- .......+... .....|.++++||.|.... .....+++..+...+.+.--+
T Consensus 149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 89999999999987532 22222233322 1135688899999996421 235566666666666554334
Q ss_pred EecCCCCCHHHHHH
Q 028792 150 TSAKSATNVEQAFM 163 (203)
Q Consensus 150 ~Sa~~~~gi~~~~~ 163 (203)
+-...+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 44444555555543
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=6.1e-16 Score=127.33 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCccccceeeEEEE----------------------EE-------
Q 028792 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL---ESYISTIGVDFKIRT----------------------VE------- 51 (203)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~------- 51 (203)
+.+..++|+|+|.+|+|||||+|+|++..+. ....+++........ +.
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456789999999999999999999988764 222222211000000 00
Q ss_pred -------ECCe-EEEEEEEeCCChhh-----------hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q 028792 52 -------QDGK-TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE 112 (203)
Q Consensus 52 -------~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 112 (203)
+.+. ...+.+|||||... +......++..+|++++|+|+++.........++..+. ..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GH 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TC
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hc
Confidence 0000 02588999999764 34555667889999999999987544444455554443 33
Q ss_pred CCcEEEEEeCCCCCCC
Q 028792 113 NVNKLLVGNKCDLTAN 128 (203)
Q Consensus 113 ~~p~iiv~nK~D~~~~ 128 (203)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5799999999998754
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=1.8e-15 Score=118.60 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 69 (203)
++|+++|.||+|||||+++|.+........+..+.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999987542212112212222222222221 235789999999765
Q ss_pred hc----hh---hhccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 028792 70 FR----TI---TSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLNEI-------------------------- 106 (203)
Q Consensus 70 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l-------------------------- 106 (203)
.. .+ ....++.+|++++|+|+++. +.+.++..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 12 22346899999999999852 1111111100000
Q ss_pred --------------------------------Hhhc-CCCCcEEEEEeCCCC--CCC-cccCHHHHHHHHHHcCCCEEEE
Q 028792 107 --------------------------------DRYA-SENVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 107 --------------------------------~~~~-~~~~p~iiv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
..+. ...+|+++++||.|. .+. .....+.+.++++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0000 123799999999973 222 1234566788888889999999
Q ss_pred ecCCCCCHHHHHH
Q 028792 151 SAKSATNVEQAFM 163 (203)
Q Consensus 151 Sa~~~~gi~~~~~ 163 (203)
||+...++.++..
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9988655554443
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=2.9e-15 Score=128.84 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=84.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCC------------CC----CCCcc--ccceeeEEEEEE------------ECC
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------------YL----ESYIS--TIGVDFKIRTVE------------QDG 54 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~----~~~~~--~~~~~~~~~~~~------------~~~ 54 (203)
.++..+|+|+|.+++|||||+++|+... +. .+..+ |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998531 10 01111 222122222222 234
Q ss_pred eEEEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028792 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 126 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 126 (203)
..+.+++|||||+..|...+...+..+|++|+|+|+++..++.....|.... ..+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 4688999999999999999999999999999999999887766655554433 2368999999999975
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=6.2e-16 Score=120.81 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=62.7
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 136 (203)
+.+.++||+|.... ...+...+|++++|+|+++++....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 56789999995321 2334678999999999986543211111 11 13578999999998532111 0111
Q ss_pred HHHHH----------HcCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 137 KAFAD----------EIGIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 137 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
..+.. .+..+++.+||++|+|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 124578999999999999999999887643
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=2.7e-14 Score=107.26 Aligned_cols=112 Identities=14% Similarity=-0.002 Sum_probs=68.7
Q ss_pred EEEEEEeCCChhhhchhhh------ccccCCcEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLN-EIDRYASENVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~iiv~nK~D~~~~~ 129 (203)
+.+.+|||||......... ..+.. +++++++|+.............. ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4689999999866433221 23456 89999999764322222221111 1111111257999999999986543
Q ss_pred ccCHHHHHH----------------------------HHHHcC--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 130 VVSYETAKA----------------------------FADEIG--IPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 130 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
.. +++.+ ++..++ ++++++||++++|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21 11111 123333 489999999999999999999887653
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=4.2e-15 Score=115.86 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=65.2
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--H
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSY--E 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~ 134 (203)
+.+.++||||...... .....+|++++|+|++..+.+..+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5789999999654332 24588999999999976543211111 00 1357799999999864322111 1
Q ss_pred HHHHHHHHc-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 135 TAKAFADEI-------GIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+..+..... ..+++++||++|.|+++++++|.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222222 3568999999999999999999987653
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=1.1e-14 Score=122.70 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=96.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccccee----------------------------------------
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVD---------------------------------------- 44 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~---------------------------------------- 44 (203)
-...+|+|+|.+++|||||+|+|++..+.+ .....+...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 356799999999999999999999876622 211111000
Q ss_pred ----------eEEEEEEECCeEEEEEEEeCCChhh-------------hchhhhccc-cCCcEEEEEEeCCChhhHHHHH
Q 028792 45 ----------FKIRTVEQDGKTIKLQIWDTAGQER-------------FRTITSSYY-RGAHGIIVVYDVTDQESFNNVK 100 (203)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 100 (203)
.....+...+ ...+.++||||... .......++ ..+|++++|+|++....-.+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0001111111 12478999999543 122223333 6789999999998643322222
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-H-HHHcC-CCEEEEecCCCCCHHHHHHHHHHH
Q 028792 101 QWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA-F-ADEIG-IPFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 101 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
.++ ......+.|+++|+||+|+............. . ....+ .+++++||++|.|++++++.+.+.
T Consensus 208 ~ll---~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIA---KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHH---HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHH---HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 222 23334478999999999997654432221110 0 00012 357789999999999999998763
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.52 E-value=5.2e-15 Score=123.91 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=78.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCCccccceeeEEEEEEECCeEEEEEEEeCCChhh
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD--DSYL----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.-+|+|+|+.++|||||..+|+. +... .+....++.......+.+++ +.++++||||+..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 45799999999999999999962 1111 01111223333333444555 7789999999999
Q ss_pred hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
|.......+..+|++|+|+|+.+.-.... +..+.....+ +.|.++++||+|...
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence 99999999999999999999986432222 2333333333 578899999999754
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.50 E-value=6.9e-13 Score=112.46 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--------CC----------CCCCccccceeeEEEEEEECC-----eEEEEEEE
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SY----------LESYISTIGVDFKIRTVEQDG-----KTIKLQIW 62 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 62 (203)
++.=+|+|+|+.++|||||..+|+.. .. ..+....++.......+.+.+ ..+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56779999999999999999999621 11 112223333333444444432 35889999
Q ss_pred eCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
||||+..|.......++-+|++|+|+|+...-......-|.. .... +.|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEccccccC
Confidence 999999999999999999999999999986433222223333 3222 689999999999753
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=4e-13 Score=104.45 Aligned_cols=103 Identities=11% Similarity=0.119 Sum_probs=63.6
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 136 (203)
..+.++||+|..... ......+|.+++++|+...+....+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 578899999964321 2235789999999998654321111111 11 134577889999754322222222
Q ss_pred HHHHHH----------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 028792 137 KAFADE----------IGIPFMETSAKSATNVEQAFMAMAASIK 170 (203)
Q Consensus 137 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 170 (203)
.++... +..+++.+||+++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1457899999999999999999988764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=4.9e-13 Score=102.46 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=77.7
Q ss_pred hhhhchhhhccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcC
Q 028792 67 QERFRTITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS-YETAKAFADEIG 144 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 144 (203)
++++..+.+.++.++|++++|+|+++++ ++..+..|+..+.. .+.|+++|+||+|+.+...+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4566777788999999999999999886 88878888876654 368999999999997543222 345566677778
Q ss_pred CCEEEEecCCCCCHHHHHHHH
Q 028792 145 IPFMETSAKSATNVEQAFMAM 165 (203)
Q Consensus 145 ~~~~~~Sa~~~~gi~~~~~~l 165 (203)
.+++++||++|.|+++++..+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 999999999999999999885
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.43 E-value=7e-14 Score=99.92 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=70.2
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHH----hhc-CCCCcEEEEEeCC-CCCCCcccCHHHHH
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEID----RYA-SENVNKLLVGNKC-DLTANKVVSYETAK 137 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~----~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~ 137 (203)
.+|+..++.+|+.++.++|++|||+|.+|.+.++ .+..+..+. ... ..+.|++|++||. |+. ..++..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 3478888999999999999999999999886543 333222222 211 2478999999995 664 345666655
Q ss_pred HHHHH----cCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 028792 138 AFADE----IGIPFMETSAKSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 138 ~~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 171 (203)
+.... ..+.++.|||.+|+|+.+.++||.+.+..
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 44322 34678999999999999999999877643
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.1e-11 Score=97.79 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=61.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-LESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 69 (203)
..-.++.++|++|+|||||+|.|.+... .....|+++.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457899999999999999999998765 4444455555555555555541 13578999999533
Q ss_pred -------hchhhhccccCCcEEEEEEeCCC
Q 028792 70 -------FRTITSSYYRGAHGIIVVYDVTD 92 (203)
Q Consensus 70 -------~~~~~~~~~~~~d~~i~v~d~~~ 92 (203)
+.......+..+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445688999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=105.11 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=52.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF 70 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 70 (203)
...++|+++|.||+|||||+|+|.+........++.+.+.....+.+++. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34589999999999999999999987664444455555555555555442 235899999997654
Q ss_pred ch-------hhhccccCCcEEEEEEeCCChh
Q 028792 71 RT-------ITSSYYRGAHGIIVVYDVTDQE 94 (203)
Q Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 94 (203)
.. .+...++.+|++++|+|+++.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 33 3455678999999999998543
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=97.31 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=75.2
Q ss_pred CCChhhhchhhhccccCCcEEEEEEeCCChhhHH---HHHHHHHHHHhh-cCCCCcEEEEEeC-CCCCCCcccCHHHHHH
Q 028792 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN---NVKQWLNEIDRY-ASENVNKLLVGNK-CDLTANKVVSYETAKA 138 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~l~~~-~~~~~p~iiv~nK-~D~~~~~~~~~~~~~~ 138 (203)
.+|+...+..|+.++.++|++|||+|.+|++.++ ++.++...+... ...+.|++|++|| .|+. ..++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 4577888999999999999999999999987644 222222223222 1247899999996 5774 3455555554
Q ss_pred HHHH----cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 139 FADE----IGIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 139 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
.... ....++.|||.+|+|+.+.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 4322 245689999999999999999999887543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=1.1e-10 Score=91.83 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------h
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD------SYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------T 74 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~ 74 (203)
.+|+++|.+|+|||||+|+|++. .......+.++ .....+..+. .+.++||||....... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 22222222222 3333444443 2689999995422211 1
Q ss_pred hccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 75 SSYY--RGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 75 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
..++ ...+.++++++....--+..+.. +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 1122 66899999999742210000000 22223346899999999998654333 23344455666666666666
Q ss_pred CCCCCH
Q 028792 153 KSATNV 158 (203)
Q Consensus 153 ~~~~gi 158 (203)
.+.+++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 554443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=8.7e-10 Score=87.58 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=69.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----cccceeeEEEEEEECCeEEEEEEEeCCChhhh------------
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYI----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------ 70 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------ 70 (203)
..++++|+|++|+|||||++.|.+..+..... +..............+....+.++|++|....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 34789999999999999999999865432111 11111111111122222246889999874321
Q ss_pred --chhh----hc---------cccC--CcE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 028792 71 --RTIT----SS---------YYRG--AHG-IIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 71 --~~~~----~~---------~~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 132 (203)
...+ .. .+.. +|+ +.|+.|....-+..+ +..+.... .+.|+|+|+||+|.....+..
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHH
Confidence 0011 00 1122 233 555666543322222 22233333 578999999999976543321
Q ss_pred --HHHHHHHHHHcCCCEEEEec
Q 028792 133 --YETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~Sa 152 (203)
...+.+.....+++++.+|.
T Consensus 196 ~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHcCCcEEecCC
Confidence 11122222334677777764
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.99 E-value=9.5e-10 Score=82.82 Aligned_cols=136 Identities=21% Similarity=0.196 Sum_probs=72.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC---------ccccceeeEEEEEEEC--CeEEEEEEEeCCChhhhc-----
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESY---------ISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFR----- 71 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~----- 71 (203)
.++++++|++|+|||||++.|.+...+..- ..+.. .....+..+ +-...++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 589999999999999999999864322110 00110 011111112 112367899999732100
Q ss_pred --hh---------------------hhccccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028792 72 --TI---------------------TSSYYRGAHGIIVVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTA 127 (203)
Q Consensus 72 --~~---------------------~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 127 (203)
.. .+..+..+++.++++|... +-.-.+ ...+...... .++++|++|+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCC
Confidence 00 0112345688899999652 222111 2223333333 89999999999865
Q ss_pred CcccC--HHHHHHHHHHcCCCEEEE
Q 028792 128 NKVVS--YETAKAFADEIGIPFMET 150 (203)
Q Consensus 128 ~~~~~--~~~~~~~~~~~~~~~~~~ 150 (203)
..+.. ...+......+++.+++.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHcCccccCC
Confidence 43321 123344455667776653
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=2.5e-11 Score=95.41 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCccccceeeEEEEEEECCeEEEEEEEeCCChhhhchh--------hh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL-----ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TS 75 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 75 (203)
.+|+++|.+|+|||||+|+|++.... .......+++.....+..+.. +.++||||....... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999875211 101112222233334444432 779999995432211 11
Q ss_pred cc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 76 SY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 76 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.+ ....+.++++++......+..+.. +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 11 366788999998732110000000 12223346899999999998754332 23334455555655555444
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=1.3e-09 Score=85.55 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=71.9
Q ss_pred ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 028792 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA----FAD 141 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 141 (203)
..++|......+...+|++++|+|+++++ ..|...+..+.. +.|+++|+||+|+.+.. ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35678888888888999999999999864 345555555443 68999999999997543 23333333 356
Q ss_pred HcCC---CEEEEecCCCCCHHHHHHHHHHH
Q 028792 142 EIGI---PFMETSAKSATNVEQAFMAMAAS 168 (203)
Q Consensus 142 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 168 (203)
..+. .++.+||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6676 79999999999999999998654
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=1.2e-09 Score=88.84 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=82.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh------cCCCC---C-CCccc-----------cceeeEEEE---------------E
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFA------DDSYL---E-SYIST-----------IGVDFKIRT---------------V 50 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~---------------~ 50 (203)
....|+|+|.+||||||++++|. +.+.. . .+.+. ....+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210 0 00000 001111100 0
Q ss_pred EECCeEEEEEEEeCCChhhhch-hh---hcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCC
Q 028792 51 EQDGKTIKLQIWDTAGQERFRT-IT---SSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKC 123 (203)
Q Consensus 51 ~~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~ 123 (203)
...+ +.+.|+||||...... .. ... ...+|.+++|+|+........ ....+... .|+ ++|+||.
T Consensus 180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~ 250 (504)
T 2j37_W 180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKL 250 (504)
T ss_dssp HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECT
T ss_pred HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCC
Confidence 0022 5688999999653211 11 111 227899999999986543111 11222221 454 7899999
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028792 124 DLTANKVVSYETAKAFADEIGIPF------------------METSAKSATN-VEQAFMAMAAS 168 (203)
Q Consensus 124 D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~ 168 (203)
|...... .........++|+ +.+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9764321 1222333445544 2368888988 88888888654
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=5.1e-10 Score=84.83 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=69.9
Q ss_pred EEeCCChh-hhchhhhccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 028792 61 IWDTAGQE-RFRTITSSYYRGAHGIIVVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAK 137 (203)
Q Consensus 61 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 137 (203)
|-..||+. .........+..+|++++|+|+.++.+.. .+..++ .++|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34577764 33445566789999999999999887643 233322 3689999999999975211 22234
Q ss_pred HHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028792 138 AFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 172 (203)
Q Consensus 138 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 172 (203)
++.+..+.+++.+||.++.|+++++..+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44555678999999999999999999988877643
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.87 E-value=1.4e-09 Score=85.53 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=70.6
Q ss_pred ChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 028792 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKA----FAD 141 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 141 (203)
.+++|......+...++++++|+|++++++ .|...+..... +.|+++|+||+|+.+.. ...+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467788888888899999999999999774 33333444333 68999999999997542 22333333 355
Q ss_pred HcCC---CEEEEecCCCCCHHHHHHHHHHHH
Q 028792 142 EIGI---PFMETSAKSATNVEQAFMAMAASI 169 (203)
Q Consensus 142 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~ 169 (203)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5665 689999999999999999987654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.83 E-value=2.7e-08 Score=78.96 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=82.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-ccccceee--EEEEEEECCeEEEEEEEeCCChhhhc----hhh-hcccc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADDSYLESY-ISTIGVDF--KIRTVEQDGKTIKLQIWDTAGQERFR----TIT-SSYYR 79 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~-~~~~~ 79 (203)
...++|+|++|+|||||+|.|.+-..+..- ....+.+. ......... .-.+.++|++|..... ... ..-+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 347999999999999999999974332211 00000000 011111111 1147899999853211 111 11133
Q ss_pred CCcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCHHH----HHHHH----HH
Q 028792 80 GAHGIIVVYDVT--DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-------ANKVVSYET----AKAFA----DE 142 (203)
Q Consensus 80 ~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~----~~~~~----~~ 142 (203)
..+..++ ++.. ..+.. .+...+.. .+.|+++|.||.|+. .-.....+. +.++. ..
T Consensus 148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 7765 22221 12222222 358999999999863 111112222 33332 12
Q ss_pred cC---CCEEEEec--CCCCCHHHHHHHHHHHHHH
Q 028792 143 IG---IPFMETSA--KSATNVEQAFMAMAASIKN 171 (203)
Q Consensus 143 ~~---~~~~~~Sa--~~~~gi~~~~~~l~~~~~~ 171 (203)
.+ ..++.+|+ ..+.|++++.+.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 22 36888999 5666799999999876643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.55 E-value=6.5e-08 Score=73.24 Aligned_cols=58 Identities=28% Similarity=0.323 Sum_probs=36.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
...++|+++|.||+|||||+|+|.+..... ...+.++... ..+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999766322 2222222222 2233332 47899999953
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.54 E-value=3.6e-08 Score=73.88 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6899999999999999999997665322 12222222222333332 47899999964
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=1.9e-07 Score=74.63 Aligned_cols=91 Identities=20% Similarity=0.147 Sum_probs=53.6
Q ss_pred EEEEEEeCCChhhhchh----hh--ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TS--SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
+.+.|+||+|....... .. .....+|.+++|+|+...+.... ....+... -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence 56889999994322111 11 11235789999999976443222 11222221 2456789999997533
Q ss_pred cCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 131 VSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
.-.+.......++|+..++. |++++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 23344555667888887775 66554
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.42 E-value=6.3e-07 Score=71.70 Aligned_cols=84 Identities=20% Similarity=0.118 Sum_probs=48.6
Q ss_pred EEEEEEeCCChhhhchh----h--hccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028792 57 IKLQIWDTAGQERFRTI----T--SSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENV-N-KLLVGNKCDLTAN 128 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~iiv~nK~D~~~~ 128 (203)
+.+.++||||....... . ...+..+|.+++|+|+..... .... +..+.. .. | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~-~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKE-AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHT-TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhh-cccCCeEEEEeCCCCccc
Confidence 56789999995432111 1 111236899999999875432 1111 222222 24 5 7889999997532
Q ss_pred cccCHHHHHHHHHHcCCCEEEEe
Q 028792 129 KVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
......+....+.++..++
T Consensus 254 ----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEEC
T ss_pred ----hHHHHHHHHHHCCCEEEee
Confidence 1223446667777776653
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=3.1e-07 Score=75.97 Aligned_cols=65 Identities=20% Similarity=0.089 Sum_probs=39.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-ccceeeEEEEE--EE-CCeEEEEEEEeCCChhh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYIS-TIGVDFKIRTV--EQ-DGKTIKLQIWDTAGQER 69 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 69 (203)
....+.|+|+|.||+|||||+|+|++....-.... +.+.+...... .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34678999999999999999999998764211111 11211112111 11 11225688999999643
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=1.9e-07 Score=69.95 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=61.1
Q ss_pred CCChhh-hchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028792 64 TAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADE 142 (203)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 142 (203)
.||+.. ........+.++|++++|+|+.++.+.... . +. .. ++|.++|+||+|+.+... .+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 355432 223455677999999999999987653211 0 11 11 689999999999975321 2233445556
Q ss_pred cCCCEEEEecCCCCCHHHHHHHHHH
Q 028792 143 IGIPFMETSAKSATNVEQAFMAMAA 167 (203)
Q Consensus 143 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 167 (203)
.+.++ .+||+++.|+++++..+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887644
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.5e-07 Score=71.93 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=61.8
Q ss_pred chhhhccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCCE
Q 028792 71 RTITSSYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPF 147 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 147 (203)
..+.+..+.++|.+++|+|+.+|.. ...+..++ ......++|.++|+||+|+.+.... ..+....+....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L---~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445557899999999999997764 32222232 2222346889999999999765321 1234445555668899
Q ss_pred EEEecCCCCCHHHHHHH
Q 028792 148 METSAKSATNVEQAFMA 164 (203)
Q Consensus 148 ~~~Sa~~~~gi~~~~~~ 164 (203)
+.+||.++.|+++++..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999888776654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=1.7e-07 Score=74.71 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=53.6
Q ss_pred EEEEEEeCCChhh--hch----hhhcc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028792 57 IKLQIWDTAGQER--FRT----ITSSY--YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTAN 128 (203)
Q Consensus 57 ~~~~i~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 128 (203)
..+.++||||... ... ....+ ....+.+++|+|+...+..... ...+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 5678999999533 111 11111 1246899999999764432222 2222222 246688999999653
Q ss_pred cccCHHHHHHHHHHcCCCEEEEecCCCCCHH
Q 028792 129 KVVSYETAKAFADEIGIPFMETSAKSATNVE 159 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (203)
..-.+.......+.|+..++. |++++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 233455556667889887775 66653
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.23 E-value=3.1e-06 Score=70.64 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDSYL 34 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~~~ 34 (203)
..|+|+|++|||||||++.|.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999986433
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.20 E-value=4.3e-06 Score=63.67 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=55.0
Q ss_pred EEEEEEeCCChhh--hch-hhh-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028792 57 IKLQIWDTAGQER--FRT-ITS-----SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTA 127 (203)
Q Consensus 57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~ 127 (203)
+.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5688999999765 221 111 12346899999999864322 1111222222 244 678899999643
Q ss_pred CcccCHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 128 NKVVSYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
. ...+.......++++..++ .|+++++
T Consensus 254 ~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 3345566777788888776 4666654
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.05 E-value=1.9e-05 Score=61.48 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=55.5
Q ss_pred ccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCCEEEEecC
Q 028792 76 SYYRGAHGIIVVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
....++|.+++|.+. +|.. ...+..++..... .++|.+||+||+|+.+.... ..+.........+.+++.+||.
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 346889999988665 4543 3323333322222 25788999999999754321 0122333445668899999999
Q ss_pred CCCCHHHHHHHH
Q 028792 154 SATNVEQAFMAM 165 (203)
Q Consensus 154 ~~~gi~~~~~~l 165 (203)
++.|++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999887653
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.96 E-value=1.1e-05 Score=62.26 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=50.9
Q ss_pred EEEEEeCCChhhhchhh----hc--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 028792 58 KLQIWDTAGQERFRTIT----SS--YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 131 (203)
.+.++|++|..+..... .. -.-..|-.++++|+..... +......+.... ....+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~---~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV---KIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence 35679999854322111 00 1123688899999765432 222222232221 234778999995322
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCHHH
Q 028792 132 SYETAKAFADEIGIPFMETSAKSATNVEQ 160 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
.-.+.......+.|+..++ +|+++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2334566677788888877 6666654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.80 E-value=2.7e-05 Score=62.36 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
....-|.|+|++++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567789999999999999999985
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.78 E-value=1.6e-06 Score=70.23 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=58.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCChhh--hchhh--------h
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTIT--------S 75 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 75 (203)
...+.|+++|.+|+||||+.++|........ .++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999975321000 11111000000000011112235788888632 22222 4
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028792 76 SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~ 120 (203)
.++...++.++|+|.++. +......|+..+... +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 455567888999999986 444445565555443 33444443
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.68 E-value=6.2e-05 Score=53.70 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=55.0
Q ss_pred EEEEEEeCCChhhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHH
Q 028792 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~ 134 (203)
+.+.++|+|+.. .......+..+|.+++++..+... ..+...++.+.... ..+.++.+|+|+.|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 567899999854 334455677799999999876543 55666666665443 234677899999985321 2 23
Q ss_pred HHHHHHHHcCCCEE
Q 028792 135 TAKAFADEIGIPFM 148 (203)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (203)
+..++.+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555665555
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=3.8e-05 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=5e-05 Score=57.97 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998654
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=6.8e-05 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.|...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 240
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.41 E-value=0.0028 Score=50.71 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=44.6
Q ss_pred EEEEEEeCCChhhhchh-hh-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028792 57 IKLQIWDTAGQERFRTI-TS-----SYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~ 129 (203)
+.+.|+||||....... .. ..+..++.+++|+|+...... ......+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 56889999995433211 11 123468899999998754322 111222221 123 34689999974322
Q ss_pred ccCHHHHHHHHHHcCCCEEEE
Q 028792 130 VVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~ 150 (203)
..+.......+.++..+
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 12334455556654433
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.40 E-value=7.8e-05 Score=53.21 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.36 E-value=0.0004 Score=52.93 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 43
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.35 E-value=2.7e-05 Score=55.08 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00011 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.|+++|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.00016 Score=50.33 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
|+.+...-..|+++|++||||||+.+.|..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333333345699999999999999999864
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.30 E-value=0.00012 Score=51.64 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999853
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.30 E-value=0.00012 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.27 E-value=0.00013 Score=50.73 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028792 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~ 29 (203)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999654
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.25 E-value=0.00014 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998643
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=0.00015 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999864
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.22 E-value=0.00018 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999853
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.21 E-value=0.00017 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998643
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.19 E-value=0.0002 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-|+|+|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999998643
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.17 E-value=0.0002 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-..|+|+|++|||||||++.|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00027 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|++.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.00022 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999998743
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00022 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|+|||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998644
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.14 E-value=0.00024 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+|+|++|||||||++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.13 E-value=0.00027 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 028792 9 FKLLLIGDSGVGKSCLLLRF 28 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l 28 (203)
+-|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00027 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++++|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00032 Score=49.81 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 1 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 1 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
|.+...+...|+|+|++||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4455556788999999999999999999764
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.11 E-value=0.00026 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 263
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.10 E-value=0.00027 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.10 E-value=0.00029 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00028 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~ 33 (203)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999997553
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.0003 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.08 E-value=0.00028 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.08 E-value=0.00033 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.07 E-value=0.00027 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
..|+|+|++||||||+++.|....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999997643
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00032 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.0003 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.05 E-value=0.00035 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (203)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.05 E-value=0.00033 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.05 E-value=0.00033 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++|+|++|||||||++.|.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998743
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.04 E-value=0.00034 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.03 E-value=0.00047 Score=49.30 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.02 E-value=0.00035 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00038 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.00 E-value=0.00037 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998744
No 280
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.00 E-value=0.00029 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.99 E-value=0.0004 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.00035 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999875
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.99 E-value=0.0004 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|+|||||++.|.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998743
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.99 E-value=0.0004 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00041 Score=51.06 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.00037 Score=51.97 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999875
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.98 E-value=0.00041 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.97 E-value=0.00057 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998743
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.97 E-value=0.00042 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++|+|+.|+|||||++.|.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.97 E-value=0.00046 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999874
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.96 E-value=0.00038 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-..|+|+|++|||||||++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999875
No 292
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.96 E-value=0.00043 Score=51.20 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.96 E-value=0.0005 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.95 E-value=0.00045 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.95 E-value=0.00046 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|+.|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.94 E-value=0.00034 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00045 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.00051 Score=48.83 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 299
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.93 E-value=0.00046 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|+.|+|||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999874
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.00051 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..-++|+|++|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999863
No 301
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.00056 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~~ 33 (203)
.++++|++|+|||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999987543
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.93 E-value=0.0005 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00052 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 304
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.92 E-value=0.00049 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998744
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.92 E-value=0.00055 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.91 E-value=0.00048 Score=52.48 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 589999999999999999875
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00061 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.91 E-value=0.00049 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 309
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.91 E-value=0.00051 Score=50.35 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028792 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~ 29 (203)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.91 E-value=0.00061 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.90 E-value=0.00051 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 312
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.90 E-value=0.0018 Score=43.49 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988764
No 313
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.90 E-value=0.00066 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...+.|+|+|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999864
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.88 E-value=0.00059 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 315
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.88 E-value=0.00054 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.87 E-value=0.0007 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.87 E-value=0.00057 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--|+|+|++|+||||+.+.|..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 318
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.85 E-value=0.00069 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.84 E-value=0.00036 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC
Q 028792 10 KLLLIGDSGVGKSCLLLRFA-DD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~-~~ 31 (203)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998 54
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00068 Score=47.42 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 321
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.83 E-value=0.00091 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.00056 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|+|||||++.|.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.83 E-value=0.00082 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+.|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.82 E-value=0.00058 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..-.-|+|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456789999999999999999875
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00074 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.81 E-value=0.00076 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00083 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999964
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.80 E-value=0.00077 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.80 E-value=0.00098 Score=47.30 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.00088 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
....|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998754
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.00087 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.78 E-value=0.0009 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...-|+++|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999964
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.77 E-value=0.00071 Score=46.98 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 334
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.76 E-value=0.00053 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.0004 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|+|||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 336
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.00072 Score=50.74 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999863
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00084 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (203)
..|+|+|++||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 338
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0022 Score=45.69 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999875
No 339
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.74 E-value=0.0006 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|++|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5789999999999999998763
No 340
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.00073 Score=52.66 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.73 E-value=0.00071 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.72 E-value=0.00081 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.71 E-value=0.00078 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 344
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.69 E-value=0.00094 Score=46.55 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 345
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.68 E-value=0.001 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999853
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.68 E-value=0.0016 Score=46.40 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
....|+|+|++||||||+.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.68 E-value=0.0011 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+.|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999985
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00094 Score=49.46 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028792 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~ 29 (203)
-|+|+|++|||||||.+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999986
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.67 E-value=0.00089 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999865
No 350
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.66 E-value=0.0011 Score=46.58 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.66 E-value=0.00093 Score=49.32 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999863
No 352
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.65 E-value=0.005 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHh
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~ 29 (203)
...+.-|.|+|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456778899999999999999664
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.65 E-value=0.0011 Score=46.62 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.64 E-value=0.0012 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.64 E-value=0.0015 Score=47.01 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.64 E-value=0.001 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|++|||||||++.|.+--
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.63 E-value=0.0011 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++|+|++|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6899999999999999998744
No 358
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.63 E-value=0.001 Score=51.78 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999998754
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0015 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...|+|.|++||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 360
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.62 E-value=0.0012 Score=47.84 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028792 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~ 30 (203)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998864
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.0013 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-..|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.60 E-value=0.001 Score=46.53 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.60 E-value=0.0011 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|++|+|||||++.|.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.60 E-value=0.0013 Score=46.37 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 365
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.60 E-value=0.0012 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998744
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.60 E-value=0.0011 Score=51.99 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++|+|++|||||||++.|.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.59 E-value=0.00048 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0011 Score=50.59 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred EEEEEeCCChhhhch------------hhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028792 58 KLQIWDTAGQERFRT------------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 125 (203)
.+.++|++|...... ..+.+....+.+++++|+...... ...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence 356889998432111 112234567788889998754432 22222222221 2 34778999985
Q ss_pred CCCcccCHHHHHHHHHHcCCCEEEEe
Q 028792 126 TANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
... .-.+.......+.|+..+.
T Consensus 260 ~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred ccc----ccHHHHHHHHHCCCeEEEe
Confidence 422 1123455566777877665
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0011 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999864
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.58 E-value=0.0012 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.57 E-value=0.0013 Score=45.35 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 373
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0052 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998876
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.57 E-value=0.0016 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...+-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999998853
No 375
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.56 E-value=0.0013 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 6899999999999999998743
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.0011 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999864
No 377
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.0019 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-..|+++|.+||||||+.+.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999999864
No 378
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0013 Score=51.28 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999998743
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.55 E-value=0.0011 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.55 E-value=0.0014 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 381
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.54 E-value=0.0013 Score=51.54 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 6899999999999999998744
No 382
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.52 E-value=0.0012 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999976
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.52 E-value=0.0012 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.-|+|+|++|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 384
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.52 E-value=0.0013 Score=46.79 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...-|+|+|++|||||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 385
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.51 E-value=0.0019 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~ 29 (203)
.....|+|+|++|||||||++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999875
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.50 E-value=0.0016 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028792 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~ 29 (203)
..|+|+|++||||||+.+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 387
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.50 E-value=0.0014 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~ 32 (203)
++++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 6899999999999999998754
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.0013 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999863
No 389
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.50 E-value=0.0015 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+|+|+.|+|||||+++|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999863
No 390
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.50 E-value=0.0015 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999998643
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.50 E-value=0.0014 Score=53.63 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|++|||||||++.|.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.50 E-value=0.00099 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999863
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.0017 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.44 E-value=0.002 Score=44.31 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.44 E-value=0.0018 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 396
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.44 E-value=0.0012 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 36899999999999999998743
No 397
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.42 E-value=0.0019 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHH
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRF 28 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l 28 (203)
.+..||+++|.+|||||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999999886
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.42 E-value=0.002 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+.|+|.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999863
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.41 E-value=0.0014 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.-|+|.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999998764
No 400
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.41 E-value=0.0021 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.39 E-value=0.0016 Score=45.22 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.++|.|++|+|||+|++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999998864
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.39 E-value=0.0013 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
--++|+|+.|||||||++.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45789999999999999999964
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0018 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0018 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--++++|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3688999999999999999864
No 405
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0023 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.34 E-value=0.0024 Score=43.31 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028792 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (203)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 407
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.33 E-value=0.002 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999863
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.32 E-value=0.0023 Score=45.36 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.31 E-value=0.0025 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0022 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+++|.+|+||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.30 E-value=0.002 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.30 E-value=0.0012 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998754
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.27 E-value=0.0034 Score=47.17 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~ 29 (203)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.27 E-value=0.0021 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--++|+|++|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3588999999999999999864
No 415
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.26 E-value=0.0029 Score=46.11 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 5 YDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 5 ~~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
....+++.|+|+|||||||+...|..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 44568999999999999999998853
No 416
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.25 E-value=0.0017 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+++.|+||+|||+++.+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888865
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0026 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.-|+|.|++||||||+++.|..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.24 E-value=0.0026 Score=45.57 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.23 E-value=0.0027 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999863
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0023 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0022 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|+|+.|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998753
No 422
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.20 E-value=0.0029 Score=42.47 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998754
No 423
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.19 E-value=0.0027 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0028 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.++++|++|+|||||++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 425
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0086 Score=43.42 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
+-|++.|+++.|||+|+++|++..
T Consensus 30 ilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 30 ILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred eEEEecCcccccHHHHHHHHhccc
Confidence 334445999999999999999864
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.11 E-value=0.004 Score=44.12 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...+.|.++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999865
No 427
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.0035 Score=45.21 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 428
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.07 E-value=0.003 Score=47.60 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|+||+|||+|++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=46.26 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 430
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.06 E-value=0.0033 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999753
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0043 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
-++++|+.|+|||||++.|.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998743
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.04 E-value=0.005 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 433
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.04 E-value=0.0034 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-+++.|+||+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999999875
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.02 E-value=0.0043 Score=45.26 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.....|+|+|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.99 E-value=0.0035 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999863
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.97 E-value=0.004 Score=48.67 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028792 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (203)
.+|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999986
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.97 E-value=0.0045 Score=44.01 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.-|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998643
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0052 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999998643
No 439
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.96 E-value=0.011 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.+++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.94 E-value=0.0041 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999998743
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.94 E-value=0.0038 Score=50.52 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++|+|++|+|||||++.|.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.92 E-value=0.0039 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999875
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0042 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999975
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.91 E-value=0.0043 Score=46.45 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 445
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.88 E-value=0.0069 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.85 E-value=0.0062 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...+++.|+||+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987653
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.83 E-value=0.0051 Score=43.62 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0068 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.|.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999998743
No 449
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.82 E-value=0.0048 Score=49.40 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999998753
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.81 E-value=0.0046 Score=46.90 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=46.7
Q ss_pred EEEEEEeCCChhhhchh----hhcccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028792 57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 130 (203)
..+.++||+|....... ....+. ..+.+++|+|++.. ...+..+...+. .-+ ..-+++||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 46889999996543221 112222 36788999987642 223333322222 111 23556799996532
Q ss_pred cCHHHHHHHHHHcCCCEEEEe
Q 028792 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+.......++++..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2245566677787765554
No 451
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.81 E-value=0.0066 Score=50.45 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 452
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.77 E-value=0.0053 Score=46.32 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|+||+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.77 E-value=0.0069 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.0056 Score=44.58 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887753
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.76 E-value=0.0043 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||++.|.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999998743
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.75 E-value=0.008 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..-.+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999999763
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.75 E-value=0.0047 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++++|++|+|||||++.|.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999988643
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.75 E-value=0.007 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.005 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.++|.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.0073 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 461
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0053 Score=48.97 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-|++.||||+|||+|++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999986
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.70 E-value=0.0084 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.|.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.70 E-value=0.0083 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~ 29 (203)
...+|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998775
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.69 E-value=0.0041 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988764
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.69 E-value=0.0067 Score=43.26 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028792 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~ 29 (203)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999974
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.0054 Score=47.25 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 467
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.68 E-value=0.0057 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.67 E-value=0.006 Score=46.48 Aligned_cols=86 Identities=24% Similarity=0.201 Sum_probs=47.3
Q ss_pred EEEEEEeCCChhhhchh-------hhc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028792 57 IKLQIWDTAGQERFRTI-------TSS-----YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 124 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~-------~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 124 (203)
..+.++|+||....... ... .-...+.+++|+|+.... +.+... ..+.... ...-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC---CCCEEEEeCCC
Confidence 35789999995321110 011 123478899999986332 112221 2222221 23356789999
Q ss_pred CCCCcccCHHHHHHHHHHcCCCEEEEec
Q 028792 125 LTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.... .-.+.......++|+..+..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 5422 22366777788888877754
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.66 E-value=0.006 Score=46.79 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.|++.|+||+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999863
No 470
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0059 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.|++.||||+|||+|++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.65 E-value=0.0086 Score=45.59 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..-|+|+|++|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34588999999999999999974
No 472
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.63 E-value=0.0073 Score=42.25 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 473
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0063 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--|++.||||+|||+|++++.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999986
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.59 E-value=0.0071 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998863
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.58 E-value=0.0067 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 476
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.57 E-value=0.0074 Score=46.20 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.+++.|+||+|||+|++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999975
No 477
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.55 E-value=0.095 Score=37.30 Aligned_cols=85 Identities=9% Similarity=0.122 Sum_probs=54.5
Q ss_pred EEEEEEeCCCh-hhhchhhhccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 028792 57 IKLQIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYET 135 (203)
Q Consensus 57 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 135 (203)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..++..+...++.+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56889999985 32 23445677899999999865 455566666666665533 4568899999986430 11344
Q ss_pred HHHHHHHcCCCEE
Q 028792 136 AKAFADEIGIPFM 148 (203)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (203)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555665554
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.55 E-value=0.0055 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.++++|++|+|||||++.|.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988763
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0098 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 028792 11 LLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~~~ 33 (203)
++|+|+.|+|||||++.|.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.51 E-value=0.0086 Score=46.13 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
-|+|+|++|||||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.50 E-value=0.0083 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999753
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.0073 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 483
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0074 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
--|++.||||+|||.|++++.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 484
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.47 E-value=0.14 Score=38.89 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028792 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~i~G~~~~GKSsli~~l~~~ 31 (203)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455667999999999999753
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.46 E-value=0.0075 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+++.|+||+|||+|++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 486
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0064 Score=46.53 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..-.++|.|+||+|||++++.+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999874
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.45 E-value=0.0035 Score=46.51 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028792 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~ 30 (203)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999975
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0073 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999875
No 489
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.42 E-value=0.0093 Score=45.43 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.39 E-value=0.0068 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 028792 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
+...|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999988753
No 491
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.38 E-value=0.0085 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-+++++|+||+|||++++.|..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 492
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.33 E-value=0.056 Score=42.06 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028792 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~ 29 (203)
-.+++|+.|+|||||++.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 46899999999999999986
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.31 E-value=0.01 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
..|+|.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999999754
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.31 E-value=0.0094 Score=46.34 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 028792 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-.|++.|+||+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999753
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.30 E-value=0.012 Score=42.99 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-|+|.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.30 E-value=0.0097 Score=46.29 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
...+++.|+||+|||++.+.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 497
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.29 E-value=0.0087 Score=48.71 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028792 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~i~G~~~~GKSsli~~l~~~ 31 (203)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 498
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.011 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
-.-|+|.|.+||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
No 499
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.27 E-value=0.01 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 028792 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~i~G~~~~GKSsli~~l~~ 30 (203)
..+++.|++|+|||++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.26 E-value=0.0099 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 028792 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~i~G~~~~GKSsli~~l~~ 30 (203)
.-.|++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
Done!