Query 028793
Match_columns 203
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 03:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028793.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028793hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b4ya1 c.31.1.5 (A:36-302) NA 37.6 4 0.00029 31.9 0.6 28 22-50 3-30 (267)
2 d1k04a_ a.24.14.1 (A:) FAT dom 27.5 18 0.0013 27.4 2.8 24 12-36 75-98 (142)
3 d1ma3a_ c.31.1.5 (A:) AF0112, 25.6 8.6 0.00063 29.2 0.6 28 21-49 2-29 (252)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 16.8 1E+02 0.0074 22.4 5.1 62 1-71 22-85 (146)
5 d1ee8a1 a.156.1.2 (A:122-210) 13.7 63 0.0046 21.4 2.9 28 17-44 59-86 (89)
6 d1tdza1 a.156.1.2 (A:132-219) 13.1 67 0.0049 21.2 2.9 29 16-44 58-86 (88)
7 d1k82a1 a.156.1.2 (A:129-216) 12.5 71 0.0052 21.1 2.9 27 18-44 60-86 (88)
8 d1z6ba1 d.38.1.6 (A:84-229) (3 11.3 45 0.0033 23.2 1.6 18 112-129 45-62 (146)
9 d1k3xa1 a.156.1.2 (A:125-213) 11.2 83 0.0061 20.5 2.9 27 17-43 63-89 (89)
10 d1r2za1 a.156.1.2 (A:135-228) 10.1 95 0.0069 20.6 2.9 27 18-44 60-86 (94)
No 1
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.62 E-value=4 Score=31.86 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCcchhh
Q 028793 22 SDFNELKIAAKKLVNDATRLGGLGFGTSF 50 (203)
Q Consensus 22 sd~~~l~~aa~kL~~ha~~l~~~g~~t~~ 50 (203)
+|+.+|...-+| +++.+.+.|.|++++.
T Consensus 3 ~~l~~l~~~l~~-ak~ivvlTGAGiS~~S 30 (267)
T d2b4ya1 3 SSMADFRKFFAK-AKHIVIISGAGVSAES 30 (267)
T ss_dssp CCHHHHHHHHHH-CSEEEEEECGGGGGGG
T ss_pred HHHHHHHHHHHh-CCcEEEEeCcceehhh
Confidence 677777777666 6777888899998763
No 2
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.51 E-value=18 Score=27.45 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.4
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHhhh
Q 028793 12 DDQVAAELISSDFNELKIAAKKLVN 36 (203)
Q Consensus 12 ~~~~~~~~i~sd~~~l~~aa~kL~~ 36 (203)
+-+.++.+++||+.||..+. |||.
T Consensus 75 eIema~klLskDm~eLi~~M-klAq 98 (142)
T d1k04a_ 75 EIEMAQKLLNSDLGELINKM-KLAQ 98 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44578899999999999998 5554
No 3
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.63 E-value=8.6 Score=29.23 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHhhhhhhhhcCCCcchh
Q 028793 21 SSDFNELKIAAKKLVNDATRLGGLGFGTS 49 (203)
Q Consensus 21 ~sd~~~l~~aa~kL~~ha~~l~~~g~~t~ 49 (203)
+++++++....++ +++.+.+.|.|.+++
T Consensus 2 ~~~i~~~~~~l~~-a~~ivv~tGAGiS~~ 29 (252)
T d1ma3a_ 2 EDEIRKAAEILAK-SKHAVVFTGAGISAE 29 (252)
T ss_dssp HHHHHHHHHHHHH-CSSEEEEECGGGSCC
T ss_pred hHHHHHHHHHHHh-CCcEEEEECchhhhh
Confidence 3455555444444 455667789999876
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=16.76 E-value=1e+02 Score=22.44 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=34.4
Q ss_pred CCcccccccccChHHHHHHHHhhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHH-HHHhC-CCcc
Q 028793 1 MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYL-LILDR-TNWR 71 (203)
Q Consensus 1 m~~~~~l~m~t~~~~~~~~i~sd~~~l~~aa~kL~~ha~~l~~~g~~t~~lqWiasiaAi~L-Lildr-Tnwk 71 (203)
+|..+|+.++--+ +.+..+++=.++-..+-+.+.++ +...++ .+..++..+.- +.-|+ +||.
T Consensus 22 ~~~~e~l~~p~~~-tik~~v~~i~~kh~~~F~~ml~~------L~i~~~--~~~~~f~~V~~elF~DG~~NWG 85 (146)
T d1k3ka_ 22 LNEPEYLYHPLLS-PIKLYITGLMRDKESLFEAMLAN------VRFHST--TGIDQLGLSMLQVSGDGNMNWG 85 (146)
T ss_dssp TCCCSSCCCSSCS-HHHHHHHHHHHHHHHHHHHHTTT------SCCCHH--HHHHHHHTHHHHHCSSCSCCHH
T ss_pred CCchHhhcCchhH-HHHHHHHHHHHHHHHHHHHHHHH------cCCCCh--HHHHHHHHHHHHHHcCCCCCHH
Confidence 4677898887442 33344444444444444444433 433333 55666666655 66788 5887
No 5
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=13.70 E-value=63 Score=21.36 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhcCC
Q 028793 17 AELISSDFNELKIAAKKLVNDATRLGGL 44 (203)
Q Consensus 17 ~~~i~sd~~~l~~aa~kL~~ha~~l~~~ 44 (203)
.++-+.++++|-.+++++.+.|+..||-
T Consensus 59 ~~Ls~~e~~~L~~~i~~vl~~ai~~gGt 86 (89)
T d1ee8a1 59 RSLTEEEARRLYRALREVLAEAVELGGS 86 (89)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3566788999999999999999999974
No 6
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=13.06 E-value=67 Score=21.21 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.5
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhcCC
Q 028793 16 AAELISSDFNELKIAAKKLVNDATRLGGL 44 (203)
Q Consensus 16 ~~~~i~sd~~~l~~aa~kL~~ha~~l~~~ 44 (203)
+.++=++++++|-.+++++-+.|++.||-
T Consensus 58 ~~~Ls~~~~~~L~~~i~~vl~~ai~~gGt 86 (88)
T d1tdza1 58 TNQLIESSIHLLHDSIIEILQKAIKLGGS 86 (88)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33566788999999999999999999863
No 7
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=71 Score=21.07 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhcCC
Q 028793 18 ELISSDFNELKIAAKKLVNDATRLGGL 44 (203)
Q Consensus 18 ~~i~sd~~~l~~aa~kL~~ha~~l~~~ 44 (203)
++=++++++|-.+++++-+.|+..||-
T Consensus 60 ~L~~~~~~~L~~~i~~vl~~a~~~gGs 86 (88)
T d1k82a1 60 SLSLAECELLARVIKAVLLRSIEQGGT 86 (88)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 555788999999999999999999863
No 8
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=11.32 E-value=45 Score=23.24 Aligned_cols=18 Identities=50% Similarity=0.778 Sum_probs=15.4
Q ss_pred hhcCCCCCCcccchhhhh
Q 028793 112 LFFPRHFPDWLDMPGSLI 129 (203)
Q Consensus 112 LFfp~~fP~~LElP~a~i 129 (203)
.||..|||+.=-+|+.++
T Consensus 45 ~~f~ghfp~~Pi~Pgvll 62 (146)
T d1z6ba1 45 PFFNGHFPQKQIMPGVLQ 62 (146)
T ss_dssp GGGGTSCTTSCCCCHHHH
T ss_pred ceeecccCCccceehHHH
Confidence 489999999999999854
No 9
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=83 Score=20.53 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhcC
Q 028793 17 AELISSDFNELKIAAKKLVNDATRLGG 43 (203)
Q Consensus 17 ~~~i~sd~~~l~~aa~kL~~ha~~l~~ 43 (203)
.++-+.++++|-.+++++.+.|...||
T Consensus 63 ~~L~~~~~~~L~~~~~~v~~~a~~~gG 89 (89)
T d1k3xa1 63 KDLNAAQLDALAHALLEIPRFSYATRG 89 (89)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 355567899999999999999998886
No 10
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.11 E-value=95 Score=20.65 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.1
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhcCC
Q 028793 18 ELISSDFNELKIAAKKLVNDATRLGGL 44 (203)
Q Consensus 18 ~~i~sd~~~l~~aa~kL~~ha~~l~~~ 44 (203)
++=++++++|-.+++++-+.|+..||-
T Consensus 60 ~Ls~~e~~~L~~~~~~vl~~ai~~gG~ 86 (94)
T d1r2za1 60 SLSSKEIERLHEEMVATIGEAVMKGGS 86 (94)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445678899999999999999999974
Done!