Query 028796
Match_columns 203
No_of_seqs 117 out of 828
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xtc_A F-box-like/WD repeat-co 95.9 0.0093 3.2E-07 41.4 4.2 34 37-70 2-35 (90)
2 1uuj_A Platelet-activating fac 95.3 0.02 6.9E-07 39.5 4.2 31 41-71 11-41 (88)
3 1vyh_C Platelet-activating fac 86.4 0.14 4.7E-06 43.6 0.0 54 40-99 8-61 (410)
4 2nxp_A Transcription initiatio 86.0 1.5 5E-05 33.1 5.7 69 96-168 34-103 (156)
5 2d68_A FOP, FGFR1OP; alpha hel 82.3 2.8 9.4E-05 28.3 5.1 30 41-70 19-48 (82)
6 2xz2_A CSTF-50, isoform B; RNA 78.9 2.8 9.7E-05 27.0 4.0 32 40-71 16-47 (66)
7 2j4b_A TAF5, transcription ini 76.8 4.6 0.00016 29.7 5.4 62 97-163 16-78 (138)
8 2y4t_A DNAJ homolog subfamily 72.2 39 0.0013 27.7 12.1 75 28-103 199-283 (450)
9 2j49_A Transcription initiatio 71.3 3.9 0.00013 30.6 3.8 61 97-162 18-79 (148)
10 3ieg_A DNAJ homolog subfamily 52.8 78 0.0027 24.5 13.8 57 87-144 244-300 (359)
11 2cp9_A EF-TS, EF-TSMT, elongat 48.3 50 0.0017 20.9 5.5 20 84-103 27-48 (64)
12 3u4t_A TPR repeat-containing p 48.0 83 0.0029 23.4 9.7 115 26-145 23-137 (272)
13 3q15_A PSP28, response regulat 46.7 70 0.0024 25.9 7.7 29 38-66 7-37 (378)
14 4gcn_A Protein STI-1; structur 43.9 72 0.0025 21.5 11.0 106 48-159 15-124 (127)
15 2xpi_A Anaphase-promoting comp 39.7 1.7E+02 0.006 24.7 12.7 72 28-102 395-466 (597)
16 2vq2_A PILW, putative fimbrial 35.9 1.2E+02 0.0039 21.6 13.1 16 128-143 159-174 (225)
17 2vxg_A LD41624, GE-1, CG6181-P 35.4 1.3E+02 0.0044 21.9 7.1 25 80-104 3-28 (139)
18 1oyi_A Double-stranded RNA-bin 35.0 32 0.0011 22.9 3.0 46 40-93 15-60 (82)
19 2v5f_A Prolyl 4-hydroxylase su 34.8 95 0.0032 20.3 6.7 58 86-143 14-73 (104)
20 2dna_A Unnamed protein product 34.1 17 0.00058 23.4 1.5 24 82-105 35-60 (67)
21 2xpi_A Anaphase-promoting comp 33.6 2.2E+02 0.0075 24.1 11.5 62 82-143 155-227 (597)
22 1k8k_G P16, ARP2/3 complex 16 32.7 45 0.0016 24.9 3.8 25 81-105 39-63 (151)
23 1xmk_A Double-stranded RNA-spe 32.3 30 0.001 22.8 2.5 47 41-94 10-57 (79)
24 3t5x_A PCI domain-containing p 31.5 71 0.0024 24.6 5.0 92 27-128 35-131 (203)
25 2ho1_A Type 4 fimbrial biogene 31.5 1.5E+02 0.0052 21.6 13.9 112 26-143 57-168 (252)
26 1whc_A RSGI RUH-027, UBA/UBX 3 31.4 55 0.0019 20.4 3.6 16 90-105 35-50 (64)
27 2knz_A Ubiquilin-4; cytoplasm, 30.4 58 0.002 19.4 3.4 16 89-104 36-51 (53)
28 2y4t_A DNAJ homolog subfamily 29.8 2.2E+02 0.0075 22.9 12.5 73 28-103 48-120 (450)
29 3dwl_G Actin-related protein 2 28.8 27 0.00094 26.1 2.0 24 82-105 41-64 (152)
30 3mkr_A Coatomer subunit epsilo 27.4 2.2E+02 0.0076 22.2 12.5 58 42-102 66-126 (291)
31 2jpq_A UPF0352 protein VP2129; 27.3 74 0.0025 21.2 3.7 24 179-202 50-73 (83)
32 3qky_A Outer membrane assembly 27.3 1.9E+02 0.0067 21.5 12.8 118 27-146 36-178 (261)
33 2bwb_A Ubiquitin-like protein 26.8 70 0.0024 18.6 3.2 13 89-101 32-44 (46)
34 3u3w_A Transcriptional activat 26.5 2.2E+02 0.0075 21.9 11.0 87 57-144 46-143 (293)
35 3iko_C Nucleoporin NUP84; NPC, 26.3 64 0.0022 28.4 4.3 27 77-103 177-203 (460)
36 1a17_A Serine/threonine protei 26.3 1.5E+02 0.0051 19.8 12.3 71 29-102 36-106 (166)
37 1q5z_A SIPA, SIPA; cell invasi 25.8 1.3E+02 0.0044 21.8 5.1 65 7-71 71-141 (177)
38 2voi_B BH3-interacting domain 25.3 39 0.0014 18.7 1.7 13 7-19 11-23 (34)
39 2vgx_A Chaperone SYCD; alterna 24.7 1.7E+02 0.006 20.1 11.9 91 45-143 26-116 (148)
40 3sxm_A Transcriptional regulat 24.6 94 0.0032 21.3 4.3 30 75-104 97-126 (140)
41 2dba_A Smooth muscle cell asso 24.2 1.5E+02 0.0052 19.3 13.4 99 41-144 29-127 (148)
42 2pmy_A RAS and EF-hand domain- 24.1 69 0.0024 20.4 3.3 30 19-48 39-68 (91)
43 3qwp_A SET and MYND domain-con 24.0 3.3E+02 0.011 23.1 9.2 86 79-164 289-381 (429)
44 2dah_A Ubiquilin-3; UBA domain 23.9 37 0.0013 20.6 1.7 15 89-103 34-48 (54)
45 3c1q_A General secretion pathw 23.9 1.7E+02 0.0059 19.8 8.5 92 49-167 22-120 (123)
46 2kbw_B BH3-interacting domain 23.5 45 0.0015 18.6 1.7 13 7-19 15-27 (35)
47 3mse_B Calcium-dependent prote 23.4 93 0.0032 22.4 4.2 31 20-50 121-151 (180)
48 3nso_A Protein S100-A3; EF-han 23.2 1.3E+02 0.0045 20.2 4.6 30 21-50 26-62 (101)
49 2jy5_A Ubiquilin-1; UBA, alter 23.0 87 0.003 18.6 3.2 14 89-102 37-50 (52)
50 1wr1_B Ubiquitin-like protein 22.8 85 0.0029 19.2 3.2 15 89-103 42-56 (58)
51 1y0n_A Hypothetical UPF0270 pr 22.5 50 0.0017 21.8 2.2 43 38-93 10-52 (78)
52 3tbi_A RNA polymerase-associat 22.3 99 0.0034 21.9 3.8 57 54-117 56-114 (115)
53 4ae4_A Ubiquitin-associated pr 22.2 2.1E+02 0.0071 20.1 8.4 23 81-103 90-114 (118)
54 3ct5_A Morphogenesis protein 1 22.2 1.2E+02 0.004 22.4 4.5 42 20-72 5-51 (159)
55 3u4t_A TPR repeat-containing p 21.9 2.4E+02 0.0083 20.7 12.5 92 45-144 78-170 (272)
56 1wgn_A UBAP1, ubiquitin associ 21.7 95 0.0033 19.6 3.2 21 83-103 35-57 (63)
57 2blf_B SORB, sulfite\:cytochro 21.4 86 0.0029 20.1 3.2 31 22-53 43-79 (81)
58 2eap_A Lymphocyte cytosolic pr 21.1 77 0.0026 21.5 2.9 25 45-70 25-49 (90)
59 1bpo_A Protein (clathrin); cla 21.0 2.5E+02 0.0087 24.9 7.0 102 36-144 327-441 (494)
60 1z96_A DNA-damage, UBA-domain 20.8 99 0.0034 16.7 3.0 12 89-100 28-39 (40)
61 2jrx_A UPF0352 protein YEJL; h 20.5 88 0.003 20.8 3.0 24 179-202 50-73 (83)
62 2ekk_A UBA domain from E3 ubiq 20.2 72 0.0025 18.3 2.4 15 89-103 32-46 (47)
63 1c07_A Protein (epidermal grow 20.2 1.1E+02 0.0038 19.8 3.7 30 19-48 22-51 (95)
64 3mkq_A Coatomer beta'-subunit; 20.1 3.8E+02 0.013 23.7 8.4 51 40-104 629-679 (814)
No 1
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.85 E-value=0.0093 Score=41.38 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCC
Q 028796 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (203)
Q Consensus 37 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~ 70 (203)
.++++++|.||..||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 5778899999999999999999999999998875
No 2
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.31 E-value=0.02 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhhCCCC
Q 028796 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (203)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~ 71 (203)
+++++-|++||..+||.+++.+|.+|+++..
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999998763
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=86.36 E-value=0.14 Score=43.63 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHH
Q 028796 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (203)
Q Consensus 40 ~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~ 99 (203)
+++++++|++||..+||.+++.+|.+|.++...... ......+.++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL------DKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcch------hhhhhchhhhhhhheeeH
Confidence 467899999999999999999999999986532111 123344666777766653
No 4
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=85.99 E-value=1.5 Score=33.10 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=49.0
Q ss_pred HHHHHHhhCchhhcc-CcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccC
Q 028796 96 AIEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED 168 (203)
Q Consensus 96 Ai~~l~~~~p~l~~~-~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~ 168 (203)
-.+|++.. +...+. =..+.|=+.++-|++||.+|...+|-+|.+++-+-+.. .+.++++.+.++..-.+
T Consensus 34 L~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i~~~~~ 103 (156)
T 2nxp_A 34 LKHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC---YYQDDLRVLSSLTKKEH 103 (156)
T ss_dssp HHHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG---GGHHHHHHHHTCCSHHH
T ss_pred HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHH---HHHHHHHHHhcCCCHHH
Confidence 35677664 332222 26789999999999999999999999999987766653 33577777766544333
No 5
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=82.32 E-value=2.8 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhhCCC
Q 028796 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (203)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~ 70 (203)
..++.||.+||...||-=|+..|..|+|..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 357899999999999999999999999985
No 6
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=78.92 E-value=2.8 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCC
Q 028796 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (203)
Q Consensus 40 ~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~ 71 (203)
++.+-+||..-|...||...|..|.+..+..+
T Consensus 16 Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 16 REILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 56789999999999999999999999988664
No 7
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=76.81 E-value=4.6 Score=29.70 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHhhCchhhcc-CcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhh
Q 028796 97 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 163 (203)
Q Consensus 97 i~~l~~~~p~l~~~-~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~l~~~~~L 163 (203)
.+|++.. +++.+. =+.+.|=+.++-|++||.+|...+|-+|..++-+.+... ..+++.+.++
T Consensus 16 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~i 78 (138)
T 2j4b_A 16 KTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFESI 78 (138)
T ss_dssp HHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTTC
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhcC
Confidence 4677664 333222 267899999999999999999999999998866655422 4556555543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=72.24 E-value=39 Score=27.66 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHH----------HHHHHHHHHcCCHHHHH
Q 028796 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD----------RMAVKKAVQCGNVEDAI 97 (203)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~----------r~~I~~~I~~g~i~~Ai 97 (203)
.+.+.+...+-+......+..-|....-+.++...|.+...+.|... ..... .....-....|++++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK-RCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444444444444444443334444445554444433221 11111 11133445667777777
Q ss_pred HHHHhh
Q 028796 98 EKVNDL 103 (203)
Q Consensus 98 ~~l~~~ 103 (203)
+++++.
T Consensus 278 ~~~~~~ 283 (450)
T 2y4t_A 278 SKYESV 283 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 9
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=71.27 E-value=3.9 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=41.3
Q ss_pred HHHHHhhCchhhcc-CcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHh
Q 028796 97 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (203)
Q Consensus 97 i~~l~~~~p~l~~~-~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~l~~~~~ 162 (203)
.+|++.. +.+.+. =+.+.|=+.++-|++||.+| ..+|-+|..++-.-+.. .+..+++.+.+
T Consensus 18 r~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 79 (148)
T 2j49_A 18 KNWVDSS-LEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 79 (148)
T ss_dssp HHHHHTS-CTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHH---HHHHHHHHHhc
Confidence 4676653 222221 25689999999999999999 99999999886655542 23455554444
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.78 E-value=78 Score=24.45 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHcCCHHHHHHHHHhhCchhhccCcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcC
Q 028796 87 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (203)
Q Consensus 87 ~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~ 144 (203)
.+..|++++|++.+++... ....++.....+....-.-+...|+..+|+++.++-+.
T Consensus 244 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMK-TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567777777777665321 11112222222222222234456788888888777554
No 11
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=48.33 E-value=50 Score=20.93 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.2
Q ss_pred HHHHH--HcCCHHHHHHHHHhh
Q 028796 84 VKKAV--QCGNVEDAIEKVNDL 103 (203)
Q Consensus 84 I~~~I--~~g~i~~Ai~~l~~~ 103 (203)
-+.++ .+||++.|+.|+.+.
T Consensus 27 cKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 27 CKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 44554 468999999999864
No 12
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.02 E-value=83 Score=23.44 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCc
Q 028796 26 REEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (203)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p 105 (203)
...+.+.+..-+-+......+..-|+...-|.++...|.+-....+..+.....-...-.-....|++++|++.++...
T Consensus 23 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~- 101 (272)
T 3u4t_A 23 IEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV- 101 (272)
T ss_dssp HHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-
Confidence 3445555555555554555555545544455666666666555321111111111222333467799999998887642
Q ss_pred hhhccCcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCc
Q 028796 106 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAP 145 (203)
Q Consensus 106 ~l~~~~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~~ 145 (203)
.+...+... +...-.-+...|+..+|+++.++-+.-
T Consensus 102 ~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 102 DRDTTRLDM----YGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHSTTCTHH----HHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred hcCcccHHH----HHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 122222222 222222345678999999999887654
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=46.73 E-value=70 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHH--HhhCHHHHHHHHHHh
Q 028796 38 IRKEDMNKLVMNFL--VTEGYVDAAEKFRME 66 (203)
Q Consensus 38 ~~~~~l~~lI~~yL--~~~Gy~eta~~f~ke 66 (203)
++.+.+..+|-++- +..+..+.|..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 33444455555554 445555555555444
No 14
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=43.95 E-value=72 Score=21.51 Aligned_cols=106 Identities=8% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHHHhhC-HHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhccCcchhhhh---HHHHH
Q 028796 48 MNFLVTEG-YVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL---QQQRL 123 (203)
Q Consensus 48 ~~yL~~~G-y~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L---~~q~f 123 (203)
..-+...| |.++...|.+...+.|. +...+..+-.+ ....|++++|++.++.-- .+..........+ +...=
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~--~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAV--YFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH--HHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHH--HHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHH
Confidence 33344444 55666677776666543 33444444333 357899999999887531 1111111111111 11111
Q ss_pred HHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHH
Q 028796 124 IELIRNGKVEEALEFAQEELAPRGEENQSFLEELER 159 (203)
Q Consensus 124 Ieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~l~~ 159 (203)
.-+...++..+|+++.++-+.... +|+....+++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~~l~~ 124 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFR--DPELVKKVKE 124 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSC--CHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc--CHHHHHHHHH
Confidence 113456899999999998765332 3544454443
No 15
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=39.70 E-value=1.7e+02 Score=24.74 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=32.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028796 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (203)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~ 102 (203)
.|.+.+...+-+......++.-|....-+.++...|.+.....|... ... .....-....|++++|++.+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~--~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LPY--LFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HHH--HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HHH--HHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444555555555554445555555555444433211 111 1122223445566666555544
No 16
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=35.93 E-value=1.2e+02 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=9.5
Q ss_pred HcCChHHHHHHHHHhc
Q 028796 128 RNGKVEEALEFAQEEL 143 (203)
Q Consensus 128 ~~~~~~~Al~y~r~~l 143 (203)
+.|+..+|+++.++-+
T Consensus 159 ~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4566666666666543
No 17
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=35.39 E-value=1.3e+02 Score=21.91 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHhhC
Q 028796 80 DRMAVKKAVQCGNVEDAI-EKVNDLN 104 (203)
Q Consensus 80 ~r~~I~~~I~~g~i~~Ai-~~l~~~~ 104 (203)
-+.+|.+++.+|++++|. .|+....
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~aL~ssd 28 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQALLAND 28 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhCc
Confidence 356799999999999996 6766543
No 18
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=35.02 E-value=32 Score=22.92 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCH
Q 028796 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (203)
Q Consensus 40 ~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i 93 (203)
...+.+-|+++|.++| -|+..++++.|+.. -.-|+++..+-.+|-+
T Consensus 15 ~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk------~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK------REVNKALYDLQRSAMV 60 (82)
T ss_dssp SHHHHHHHHHHHSSST--EEHHHHHHHSSSCH------HHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH------HHHHHHHHHHHHCCCE
Confidence 3455777889999999 89999999999852 2345666666666644
No 19
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=34.83 E-value=95 Score=20.27 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHcCCHHHHHHHHHhhCchhhccC--cchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028796 86 KAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (203)
Q Consensus 86 ~~I~~g~i~~Ai~~l~~~~p~l~~~~--~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l 143 (203)
.....|++..|+.|..+-........ ..-.-.++.+--.-+.+.|+...|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44678999999999987532221111 01111222222223457899999999998754
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.14 E-value=17 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHH--HcCCHHHHHHHHHhhCc
Q 028796 82 MAVKKAV--QCGNVEDAIEKVNDLNP 105 (203)
Q Consensus 82 ~~I~~~I--~~g~i~~Ai~~l~~~~p 105 (203)
+...+++ ..||++.|++|+-.+.+
T Consensus 35 ~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 35 NANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4434444 46899999999987754
No 21
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=33.55 E-value=2.2e+02 Score=24.08 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCchhh-----------ccCcchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028796 82 MAVKKAVQCGNVEDAIEKVNDLNPEIL-----------DTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (203)
Q Consensus 82 ~~I~~~I~~g~i~~Ai~~l~~~~p~l~-----------~~~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l 143 (203)
..+.-....|++++|++.+++..|.-. ..+.......+...-.-+.+.|+..+|+++.++-+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555677888888888876444320 00001112222222223456788999998888754
No 22
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=32.71 E-value=45 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCc
Q 028796 81 RMAVKKAVQCGNVEDAIEKVNDLNP 105 (203)
Q Consensus 81 r~~I~~~I~~g~i~~Ai~~l~~~~p 105 (203)
-.+|++++..|+..+|++.+-++-|
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP 63 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPP 63 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4789999999999999999988755
No 23
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=32.28 E-value=30 Score=22.80 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHH-HHHHHHHHHHHcCCHH
Q 028796 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATI-TDRMAVKKAVQCGNVE 94 (203)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~-~~r~~I~~~I~~g~i~ 94 (203)
..+..-|++||..+|= -||..++++.|+.+ . .-|+++..+-.+|-+.
T Consensus 10 ~~~~~~IL~~Lk~~g~-~ta~eiA~~Lgit~------~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSD-SSALNLAKNIGLTK------ARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHHTCC-EEHHHHHHHHCGGG------HHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHcCC-cCHHHHHHHcCCCc------HHHHHHHHHHHHHCCCEE
Confidence 4568889999999994 57899999999852 3 4567777777777665
No 24
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.52 E-value=71 Score=24.56 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=57.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHH----HhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028796 27 EEWEKKLNDVKIRKEDMNKLVMNFL----VTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (203)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~yL----~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~ 102 (203)
+.+..++.+.+-+...-.+.|+-|| +-.|...+...|.+ .+.. .-..+.+++..||+..--+++++
T Consensus 35 ~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~-~~~~---------~y~~L~~Avr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 35 EYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK-YHLM---------QFAEVTRAVSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHH-TTCG---------GGHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhh-Cchh---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456667777766556678888888 45566555555532 2221 12468999999999999999998
Q ss_pred hCchhhccCcc-hhhhhHHHHHHHHHH
Q 028796 103 LNPEILDTNPQ-LFFHLQQQRLIELIR 128 (203)
Q Consensus 103 ~~p~l~~~~~~-l~F~L~~q~fIeli~ 128 (203)
+...+.+.+.. +.-.++.+-+..++|
T Consensus 105 ~~~~f~~~~~~lll~rlr~~v~r~l~r 131 (203)
T 3t5x_A 105 HEAFFIRCGIFLILEKLKIITYRNLFK 131 (203)
T ss_dssp THHHHHHHTCHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 86666555432 222344444445555
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=31.45 E-value=1.5e+02 Score=21.63 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCc
Q 028796 26 REEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (203)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p 105 (203)
...+.+.+...+-+......+..-|+...-+.++...|.+.....|. +.... .....-....|++++|++++++...
T Consensus 57 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 57 KVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVL--NNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH--HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHH--HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34455555544444444444433444333444555555554443332 12211 2223334567888888888776532
Q ss_pred hhhccCcchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028796 106 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (203)
Q Consensus 106 ~l~~~~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l 143 (203)
....+. ........-.-+...|+..+|+++.++-+
T Consensus 134 --~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 134 --DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp --CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001111 11111111112345677777777777644
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.45 E-value=55 Score=20.43 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHhhCc
Q 028796 90 CGNVEDAIEKVNDLNP 105 (203)
Q Consensus 90 ~g~i~~Ai~~l~~~~p 105 (203)
+++++.|++|+-++.+
T Consensus 35 ~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 35 NQGIEAAMDWLMEHED 50 (64)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 5799999999988754
No 27
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=30.39 E-value=58 Score=19.44 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.9
Q ss_pred HcCCHHHHHHHHHhhC
Q 028796 89 QCGNVEDAIEKVNDLN 104 (203)
Q Consensus 89 ~~g~i~~Ai~~l~~~~ 104 (203)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 5689999999987653
No 28
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=29.79 E-value=2.2e+02 Score=22.93 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 028796 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 103 (203)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~ 103 (203)
.+.+.+...+-+......+..-|+...-+.++...|.+.....|.. ... ......-....|++++|++.+++.
T Consensus 48 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 48 QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-TAA--RLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHH--HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444455555555555555555556556665554443322 111 122233446788999998877653
No 29
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=28.82 E-value=27 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc
Q 028796 82 MAVKKAVQCGNVEDAIEKVNDLNP 105 (203)
Q Consensus 82 ~~I~~~I~~g~i~~Ai~~l~~~~p 105 (203)
.+|++++..|+..+|++.+-++-|
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~pP 64 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSYVP 64 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC
Confidence 789999999999999999988855
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.41 E-value=2.2e+02 Score=22.21 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhCH-HHHHHHHHHhh--CCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028796 42 DMNKLVMNFLVTEGY-VDAAEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (203)
Q Consensus 42 ~l~~lI~~yL~~~Gy-~eta~~f~ke~--~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~ 102 (203)
....++++|+...|- .++.+.|.+-. +..|. +.+..- ..=.-....|++++|+++++.
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~~~--~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFLL--MAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHHH--HHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHHHH--HHHHHHHHCCCHHHHHHHHhC
Confidence 345667778887774 44444454432 22222 111111 111223466777777777766
No 31
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=27.26 E-value=74 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.1
Q ss_pred CHhhHHHHHHHHHHHHHhhcCCCC
Q 028796 179 DISQRLKTASEVNAAILTSQSHEK 202 (203)
Q Consensus 179 ~~~~r~~la~~vN~aiL~~~~~~~ 202 (203)
.+.+|+.+|+.|-.|+..+...+|
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~~ 73 (83)
T 2jpq_A 50 AASQRKLIAEKFAQALMSSLETPK 73 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCc
Confidence 489999999999999999987654
No 32
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=27.26 E-value=1.9e+02 Score=21.51 Aligned_cols=118 Identities=9% Similarity=-0.048 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHH--------cCCHHH
Q 028796 27 EEWEKKLNDVKIR---KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQ--------CGNVED 95 (203)
Q Consensus 27 ~~~~~~~~~~~~~---~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~--------~g~i~~ 95 (203)
..+.+.+...+-+ ......+-.-|+...-|.++...|.+-....|............-.-... .|++++
T Consensus 36 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 36 EYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp HHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 3455555555555 44445555556665667777777777666544222111111111222234 799999
Q ss_pred HHHHHHhhCchhhccCcchhhhhH--------------HHHHHHHHHcCChHHHHHHHHHhcCcc
Q 028796 96 AIEKVNDLNPEILDTNPQLFFHLQ--------------QQRLIELIRNGKVEEALEFAQEELAPR 146 (203)
Q Consensus 96 Ai~~l~~~~p~l~~~~~~l~F~L~--------------~q~fIeli~~~~~~~Al~y~r~~l~~~ 146 (203)
|++++++.- .....++... ... ...=.-+.+.|+..+|+.+.++-+..+
T Consensus 116 A~~~~~~~l-~~~p~~~~~~-~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 116 AIEAFQLFI-DRYPNHELVD-DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHHHHHHH-HHCTTCTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHCcCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 998876531 1111111111 110 011111456789999999999866433
No 33
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.83 E-value=70 Score=18.55 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHH
Q 028796 89 QCGNVEDAIEKVN 101 (203)
Q Consensus 89 ~~g~i~~Ai~~l~ 101 (203)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 5689999999874
No 34
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=26.53 E-value=2.2e+02 Score=21.86 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhCCCC--------CccHHHHHH-HHHHHHHHHcCCHHHHHHHHHhhCchhhccCcchhhhhHHHHHHH--
Q 028796 57 VDAAEKFRMESGTEP--------DIDLATITD-RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 125 (203)
Q Consensus 57 ~eta~~f~ke~~~~~--------~~~~e~~~~-r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~q~fIe-- 125 (203)
.+++..+++..|+.+ ..+.+.... ...+...+..|++++|++.+++... .....++....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHH
Confidence 466666677777653 122333333 3458888999999999999877422 1111122211121222122
Q ss_pred HHHcCChHHHHHHHHHhcC
Q 028796 126 LIRNGKVEEALEFAQEELA 144 (203)
Q Consensus 126 li~~~~~~~Al~y~r~~l~ 144 (203)
....++..+|+.+.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2245688999999998765
No 35
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=26.30 E-value=64 Score=28.36 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 028796 77 TITDRMAVKKAVQCGNVEDAIEKVNDL 103 (203)
Q Consensus 77 ~~~~r~~I~~~I~~g~i~~Ai~~l~~~ 103 (203)
.....+.|-.+|+.|++++|++||.+.
T Consensus 177 e~~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 177 DHIFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 455568899999999999999999875
No 36
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=26.28 E-value=1.5e+02 Score=19.83 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028796 29 WEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (203)
Q Consensus 29 ~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~ 102 (203)
+.+.+...+-+......+..-|+...-|.++...|.+...+.|. +...... .-.-....|++++|++++.+
T Consensus 36 ~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~--~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 36 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYR--RAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH--HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH--HHHHHHHhccHHHHHHHHHH
Confidence 34444433444433344333333333344444455444443321 1111111 11223455677777666654
No 37
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=25.80 E-value=1.3e+02 Score=21.84 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHhhcCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHhhCCCC
Q 028796 7 VIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRK------EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~ 71 (203)
|-|....+.+-+-++..|+-...+..-..++-++ +.+...|.-|=.++...+.|-.|.+|+|+..
T Consensus 71 vrrafd~lraeil~nd~iks~alkaqcsdi~~~~elk~kidtlke~it~hpqkeklaevalqf~reagltk 141 (177)
T 1q5z_A 71 VRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTR 141 (177)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhhhhhhhhcCCchHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhchhh
Confidence 3444445555556666665555544444444433 4466677777777888999999999999864
No 38
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=25.29 E-value=39 Score=18.68 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhh
Q 028796 7 VIRQLAEIEAMAM 19 (203)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (203)
+.||||.||..+|
T Consensus 11 ia~~la~igd~~d 23 (34)
T 2voi_B 11 IARHLAQIGDEMD 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHccchhhhhh
Confidence 5789999998765
No 39
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=24.68 E-value=1.7e+02 Score=20.08 Aligned_cols=91 Identities=19% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhccCcchhhhhHHHHHH
Q 028796 45 KLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLI 124 (203)
Q Consensus 45 ~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~q~fI 124 (203)
.+-..|+...-|.++...|.+-..+.|. +.+....+- .-....|++++|++.+..-- .+...++...+.+- .
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg--~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~lg----~ 97 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLG--ACRQAMGQYDLAIHSYSYGA-VMDIXEPRFPFHAA----E 97 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH--HHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHH----H
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHH--HHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHHH----H
Confidence 3333444444456666667666555443 223332222 23357899999999887641 22223334443332 2
Q ss_pred HHHHcCChHHHHHHHHHhc
Q 028796 125 ELIRNGKVEEALEFAQEEL 143 (203)
Q Consensus 125 eli~~~~~~~Al~y~r~~l 143 (203)
-+...|+..+|+++.++-+
T Consensus 98 ~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 2456799999999998754
No 40
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=24.65 E-value=94 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 028796 75 LATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (203)
Q Consensus 75 ~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~ 104 (203)
...+..=..|.++|.+||.+.|.+.+..+.
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl 126 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHL 126 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346667778899999999999988887763
No 41
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=1.5e+02 Score=19.28 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhccCcchhhhhHH
Q 028796 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120 (203)
Q Consensus 41 ~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~ 120 (203)
.....+...|+...-|.++...|.+.....|............-.-....|++++|++++.... .+...+....+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~--- 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EKDGGDVKALYR--- 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSCCHHHHHH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hhCccCHHHHHH---
Confidence 3344555555555556677777777777655321111112222333467899999999987642 111112222222
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcC
Q 028796 121 QRLIELIRNGKVEEALEFAQEELA 144 (203)
Q Consensus 121 q~fIeli~~~~~~~Al~y~r~~l~ 144 (203)
.-.-+...|+..+|+.+.++-+.
T Consensus 105 -~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 -RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHH
Confidence 12224457899999999987654
No 42
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.05 E-value=69 Score=20.39 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred hcccCCCHHHHHHHhhcCCCCHHHHHHHHH
Q 028796 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (203)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (203)
..++.|+.+++...+....++...+..++.
T Consensus 39 d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 39 NRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp TCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 346789999998888777666666555543
No 43
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=23.98 E-value=3.3e+02 Score=23.06 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH---hhCchhhccCcchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCcc----ccCCh
Q 028796 79 TDRMAVKKAVQCGNVEDAIEKVN---DLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPR----GEENQ 151 (203)
Q Consensus 79 ~~r~~I~~~I~~g~i~~Ai~~l~---~~~p~l~~~~~~l~F~L~~q~fIeli~~~~~~~Al~y~r~~l~~~----~~~~~ 151 (203)
.....+...-..|++++|++.++ +.+-.++..+....-...-.-..-+...|+..+|+.+.++-+..+ +..||
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Q ss_pred hHHHHHHHHHhhh
Q 028796 152 SFLEELERTVALL 164 (203)
Q Consensus 152 ~~~~~l~~~~~LL 164 (203)
+....+..+..+.
T Consensus 369 ~~a~~l~nLa~~~ 381 (429)
T 3qwp_A 369 VRGVQVMKVGKLQ 381 (429)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 44
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.94 E-value=37 Score=20.58 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.8
Q ss_pred HcCCHHHHHHHHHhh
Q 028796 89 QCGNVEDAIEKVNDL 103 (203)
Q Consensus 89 ~~g~i~~Ai~~l~~~ 103 (203)
..||++.|++|+-.+
T Consensus 34 ~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 34 TGGDVDAAVEKLRQS 48 (54)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 579999999998765
No 45
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=23.89 E-value=1.7e+02 Score=19.78 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred HHHHhhCH--HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcC-CHHHHHHHHHhhCchhhccCcchhhhhHHHHHHH
Q 028796 49 NFLVTEGY--VDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCG-NVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE 125 (203)
Q Consensus 49 ~yL~~~Gy--~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g-~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~q~fIe 125 (203)
..|++.|. .++...+.+..+ +...-.....+.+.|..| .+.+|++-....+|.. ++.
T Consensus 22 a~ll~sGv~l~~aL~~~~~~~~-----~~~l~~~l~~i~~~l~~G~sls~Al~~~~~~fp~~---------------~~~ 81 (123)
T 3c1q_A 22 ATLVQSGMPLEECLRAVAEQSE-----KPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDEL---------------FRS 81 (123)
T ss_dssp HHHHHTTCCHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSCHH---------------HHH
T ss_pred HHHHHcCCCHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHCCCCHHHHHHhccccCCHH---------------HHH
Confidence 45667775 455555554433 123344567888899998 5788886433334422 444
Q ss_pred HHH----cCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhccc
Q 028796 126 LIR----NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE 167 (203)
Q Consensus 126 li~----~~~~~~Al~y~r~~l~~~~~~~~~~~~~l~~~~~LL~~~ 167 (203)
+|+ +|++.++++..-+.+. +..+.-.++.+.|.||
T Consensus 82 mi~~GE~sG~L~~~L~~la~~~e-------~~~~~~~~~~~al~YP 120 (123)
T 3c1q_A 82 MVAAGEKSGHLDSVLERLADYAE-------NRQKMRSKLQQASENL 120 (123)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------HHHHHHHHHHTTC---
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 454 5788888776665442 2233444667777776
No 46
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=23.54 E-value=45 Score=18.59 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhh
Q 028796 7 VIRQLAEIEAMAM 19 (203)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (203)
+.||||.|+..+|
T Consensus 15 ia~qla~igd~~d 27 (35)
T 2kbw_B 15 IARHLAQVGDSMD 27 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHccchhhhhh
Confidence 5789999998765
No 47
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=23.36 E-value=93 Score=22.37 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=24.0
Q ss_pred cccCCCHHHHHHHhhcCCCCHHHHHHHHHHH
Q 028796 20 SKKVITREEWEKKLNDVKIRKEDMNKLVMNF 50 (203)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~y 50 (203)
.++.|+.+++...+.+.+++...+..++..+
T Consensus 121 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~ 151 (180)
T 3mse_B 121 EDGYISKSDIVSLVHDKVLDNNDIDNFFLSV 151 (180)
T ss_dssp CSSCBCHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 5678888888888888788888877776554
No 48
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=23.23 E-value=1.3e+02 Score=20.17 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.2
Q ss_pred ccCCCHHHHHHHhhc-------CCCCHHHHHHHHHHH
Q 028796 21 KKVITREEWEKKLND-------VKIRKEDMNKLVMNF 50 (203)
Q Consensus 21 ~~~~~~~~~~~~~~~-------~~~~~~~l~~lI~~y 50 (203)
++.|++.|+...+.+ .+.+...+..+|.+.
T Consensus 26 ~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~ 62 (101)
T 3nso_A 26 KYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVL 62 (101)
T ss_dssp TTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHH
T ss_pred CCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHh
Confidence 489999999888764 356677777777553
No 49
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=23.00 E-value=87 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.2
Q ss_pred HcCCHHHHHHHHHh
Q 028796 89 QCGNVEDAIEKVND 102 (203)
Q Consensus 89 ~~g~i~~Ai~~l~~ 102 (203)
..||++.|++|+-.
T Consensus 37 t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 37 TGGDINAAIERLLG 50 (52)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHh
Confidence 45899999999854
No 50
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.77 E-value=85 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.0
Q ss_pred HcCCHHHHHHHHHhh
Q 028796 89 QCGNVEDAIEKVNDL 103 (203)
Q Consensus 89 ~~g~i~~Ai~~l~~~ 103 (203)
..||++.|++|+-.+
T Consensus 42 ~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 42 SGGSVQGALDSLLNG 56 (58)
T ss_dssp HTSCHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHhC
Confidence 568999999998653
No 51
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.48 E-value=50 Score=21.81 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCH
Q 028796 38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (203)
Q Consensus 38 ~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i 93 (203)
++++.|+.||-+|..|+|-- .|. ....-....++++++.+|+.
T Consensus 10 L~~eTL~nLIeefv~RegtD---------yg~----E~sL~~kv~qv~~qL~~Gea 52 (78)
T 1y0n_A 10 LEADTLNNLLEDFVTREGTD---------NGD----ETPLDVRVERARHALRRGEA 52 (78)
T ss_dssp SCHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHHhccccc---------ccc----cccHHHHHHHHHHHHHcCCE
Confidence 57788899999999999964 121 01122344678888888863
No 52
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=22.32 E-value=99 Score=21.85 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=28.3
Q ss_pred hCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhc--cCcchhhh
Q 028796 54 EGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILD--TNPQLFFH 117 (203)
Q Consensus 54 ~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~--~~~~l~F~ 117 (203)
.-|.|+...+++|.++++..-. +.|-..|.+.=-.+|++. +-.+|.+-+ .++.|.|.
T Consensus 56 msYLEA~~~w~EEnsIe~~~~~------K~Ip~~IiEKIk~EAIe~-n~LRPS~~~~~~t~TLDFl 114 (115)
T 3tbi_A 56 MSYLEATTAFLEENSIPETQFA------KFIPSGIIEKIQSEAIDE-NLLRPSVVRCEKTNTLDFL 114 (115)
T ss_dssp CCHHHHHHHHHHHHTCCGGGHH------HHSCHHHHHHHHHHHHHH-TCSCHHHHHC---------
T ss_pred chHHHHHHHHHHHcCCCHHHhh------HhcCHHHHHHHHHHHHHh-cccCchhhcccccchHHhh
Confidence 5689999999999999642111 223333333333455543 445565444 23455554
No 53
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=22.21 E-value=2.1e+02 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHhh
Q 028796 81 RMAVKKAV--QCGNVEDAIEKVNDL 103 (203)
Q Consensus 81 r~~I~~~I--~~g~i~~Ai~~l~~~ 103 (203)
+..++.++ .+||++.|++|+-..
T Consensus 90 ~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 90 LKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 56788886 557999999998653
No 54
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=22.17 E-value=1.2e+02 Score=22.44 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=31.7
Q ss_pred cccCCCHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCHHHHHHH-----HHHhhCCCCC
Q 028796 20 SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEK-----FRMESGTEPD 72 (203)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~-----f~ke~~~~~~ 72 (203)
++++++..+-.+ -.+-|.+||...|+.+.+.+ +..|+|+.|.
T Consensus 5 ~~~~~t~~~~~~-----------~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 5 SNKYLTMSEMKV-----------NAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp SSSCCCHHHHHH-----------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCHHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 445666666644 36889999999999876665 8889998774
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=21.85 E-value=2.4e+02 Score=20.69 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=49.8
Q ss_pred HHHHHHHHhhC-HHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhccCcchhhhhHHHHH
Q 028796 45 KLVMNFLVTEG-YVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRL 123 (203)
Q Consensus 45 ~lI~~yL~~~G-y~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l~F~L~~q~f 123 (203)
..++..+...| +.++...|.+.....|... +... ..-.-....|++++|++.+++.... ...+....+.+-...|
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~--~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRL-DMYG--QIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHH--HHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccH-HHHH--HHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHH
Confidence 34444444444 5566666666555544322 2222 2233346789999999998775322 1122223333321222
Q ss_pred HHHHHcCChHHHHHHHHHhcC
Q 028796 124 IELIRNGKVEEALEFAQEELA 144 (203)
Q Consensus 124 Ieli~~~~~~~Al~y~r~~l~ 144 (203)
..++..+|+++.++-+.
T Consensus 154 ----~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 154 ----YNKEYVKADSSFVKVLE 170 (272)
T ss_dssp ----HTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 24589999999887654
No 56
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.71 E-value=95 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=14.7
Q ss_pred HHHHHH--HcCCHHHHHHHHHhh
Q 028796 83 AVKKAV--QCGNVEDAIEKVNDL 103 (203)
Q Consensus 83 ~I~~~I--~~g~i~~Ai~~l~~~ 103 (203)
+-+.++ ..||++.|.+|+=.|
T Consensus 35 qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 35 CVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 344444 568999999998554
No 57
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=21.36 E-value=86 Score=20.09 Aligned_cols=31 Identities=10% Similarity=0.348 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHhhcCC------CCHHHHHHHHHHHHHh
Q 028796 22 KVITREEWEKKLNDVK------IRKEDMNKLVMNFLVT 53 (203)
Q Consensus 22 ~~~~~~~~~~~~~~~~------~~~~~l~~lI~~yL~~ 53 (203)
+..++..|...+.++. ++.+++. .|.+||..
T Consensus 43 ~~~~~~~W~~~v~~M~~~~g~~ls~~e~~-~I~~YL~~ 79 (81)
T 2blf_B 43 PGKGQAFWDAEVQKMIKVYHAPVDEADAK-AIADYLAK 79 (81)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCCCHHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHH
Confidence 3578899987555543 6666655 56778764
No 58
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=77 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHhhCCC
Q 028796 45 KLVMNFLVTEGYVDAAEKFRMESGTE 70 (203)
Q Consensus 45 ~lI~~yL~~~Gy~eta~~f~ke~~~~ 70 (203)
.-|++||-+.||.+ ++.|++...+.
T Consensus 25 ~~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 25 DSLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp TTHHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHHcCCch-HHHHHHHhccC
Confidence 45889999999999 89998666553
No 59
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.96 E-value=2.5e+02 Score=24.90 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhccCcch-
Q 028796 36 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL- 114 (203)
Q Consensus 36 ~~~~~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~p~l~~~~~~l- 114 (203)
+.++.+.|.--|.+-| ...+.|-.++...|++-..+. -.++..+++..|++++|-..+...-.++++....+
T Consensus 327 v~v~e~~ivpyi~~~l---~n~~lA~~lA~R~~LpGAd~L----~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~ 399 (494)
T 1bpo_A 327 VCVEEENIIPYITNVL---QNPDLALRMAVRNNLAGAEEL----FARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIR 399 (494)
T ss_dssp EEECTTTHHHHHHHTT---CCHHHHHHHHHHTTCSSCHHH----HHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHH
T ss_pred EEEccccchhhhhhcc---CCHHHHHHHHHhcCCccHHHH----HHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHH
Confidence 3445444433333333 667899999999998643333 34557899999999999888765422344421000
Q ss_pred h----------hhhHHHHHHHHHHcCC--hHHHHHHHHHhcC
Q 028796 115 F----------FHLQQQRLIELIRNGK--VEEALEFAQEELA 144 (203)
Q Consensus 115 ~----------F~L~~q~fIeli~~~~--~~~Al~y~r~~l~ 144 (203)
. -.-..|.|--++..|. ..+.+|.+|--|.
T Consensus 400 rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 400 RFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQ 441 (494)
T ss_dssp HHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHHHh
Confidence 0 1124456666777664 5578888886554
No 60
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.85 E-value=99 Score=16.67 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=9.7
Q ss_pred HcCCHHHHHHHH
Q 028796 89 QCGNVEDAIEKV 100 (203)
Q Consensus 89 ~~g~i~~Ai~~l 100 (203)
.+||++.|++|+
T Consensus 28 ~~~n~e~A~~~L 39 (40)
T 1z96_A 28 ANGDLDVAASFL 39 (40)
T ss_dssp TTTCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 367899999886
No 61
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=20.54 E-value=88 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred CHhhHHHHHHHHHHHHHhhcCCCC
Q 028796 179 DISQRLKTASEVNAAILTSQSHEK 202 (203)
Q Consensus 179 ~~~~r~~la~~vN~aiL~~~~~~~ 202 (203)
.+.+|+.+|+.|-.|+..+...+|
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~~ 73 (83)
T 2jrx_A 50 APAQRQAIANSFARALQSSINEDK 73 (83)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCc
Confidence 478899999999999999886654
No 62
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.19 E-value=72 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=11.8
Q ss_pred HcCCHHHHHHHHHhh
Q 028796 89 QCGNVEDAIEKVNDL 103 (203)
Q Consensus 89 ~~g~i~~Ai~~l~~~ 103 (203)
..||++.|++|+-.+
T Consensus 32 ~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 32 NTSTMEQATEYLLTH 46 (47)
T ss_dssp HSCSHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcC
Confidence 457999999998654
No 63
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.19 E-value=1.1e+02 Score=19.79 Aligned_cols=30 Identities=3% Similarity=-0.057 Sum_probs=23.2
Q ss_pred hcccCCCHHHHHHHhhcCCCCHHHHHHHHH
Q 028796 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (203)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (203)
..++.|+.+++...+....++...+..++.
T Consensus 22 d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 22 DMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp TCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356889999999988888777776666654
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=20.07 E-value=3.8e+02 Score=23.70 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 028796 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (203)
Q Consensus 40 ~~~l~~lI~~yL~~~Gy~eta~~f~ke~~~~~~~~~e~~~~r~~I~~~I~~g~i~~Ai~~l~~~~ 104 (203)
...+ .-++.||...|+.+.|..+.++. ......++..|+++.|.+.+....
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~~-------------~~~f~~~l~~~~~~~A~~~~~~~~ 679 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPDQ-------------DQKFELALKVGQLTLARDLLTDES 679 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCCH-------------HHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCCc-------------chheehhhhcCCHHHHHHHHHhhC
Confidence 3444 67778999999999888776321 234566788999999999887653
Done!