Query 028798
Match_columns 203
No_of_seqs 207 out of 1651
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 100.0 1.5E-27 3.1E-32 185.2 14.9 102 79-186 35-137 (137)
2 PRK11597 heat shock chaperone 100.0 1.1E-27 2.4E-32 186.6 14.1 104 79-188 33-137 (142)
3 COG0071 IbpA Molecular chapero 99.9 7.6E-27 1.6E-31 183.0 15.7 108 77-186 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 6E-26 1.3E-30 164.6 12.0 92 80-171 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 4.4E-24 9.4E-29 156.9 14.4 102 82-186 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 5.2E-24 1.1E-28 154.5 12.0 90 80-171 2-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 2.1E-23 4.5E-28 150.9 13.0 89 79-171 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.1E-22 4.5E-27 144.6 11.5 82 82-171 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.1E-22 1.3E-26 141.3 11.2 82 82-171 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 6.8E-22 1.5E-26 141.3 11.2 82 83-172 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 6.5E-22 1.4E-26 140.5 9.5 79 82-171 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 4.1E-21 8.9E-26 137.0 11.2 81 83-171 2-83 (83)
13 cd06481 ACD_HspB9_like Alpha c 99.9 4.1E-21 8.9E-26 138.2 10.4 83 85-171 4-87 (87)
14 cd06475 ACD_HspB1_like Alpha c 99.8 1E-20 2.2E-25 135.9 10.6 82 81-170 3-85 (86)
15 cd06482 ACD_HspB10 Alpha cryst 99.8 1.2E-20 2.7E-25 135.6 10.5 80 86-170 6-86 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 4.3E-20 9.4E-25 131.0 11.8 88 82-171 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 5.5E-20 1.2E-24 131.1 11.0 79 84-170 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 7.1E-20 1.5E-24 130.3 9.3 77 87-171 6-83 (83)
19 KOG3591 Alpha crystallins [Pos 99.8 1.1E-17 2.3E-22 134.5 14.4 106 79-193 63-169 (173)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 1.3E-17 2.9E-22 120.7 10.5 81 83-171 10-91 (91)
21 KOG0710 Molecular chaperone (s 99.7 3.3E-18 7.2E-23 140.2 7.0 108 78-186 84-195 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 1.3E-13 2.9E-18 94.2 10.2 80 83-171 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 5.2E-11 1.1E-15 83.0 9.2 71 83-174 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 98.9 8.8E-09 1.9E-13 82.6 10.3 78 79-176 92-172 (177)
25 cd06463 p23_like Proteins cont 98.9 1.2E-08 2.5E-13 70.9 9.7 76 83-174 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 1.8E-07 3.8E-12 65.8 8.5 77 82-174 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.4 1E-05 2.2E-10 55.5 12.0 77 79-171 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 0.0001 2.2E-09 54.5 10.5 78 79-173 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.0 4.6E-05 9.9E-10 66.5 9.0 65 87-170 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.9 0.00017 3.6E-09 50.9 9.4 77 82-174 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.7 0.00049 1.1E-08 48.3 9.2 75 81-174 1-77 (85)
32 cd06468 p23_CacyBP p23_like do 97.6 0.0012 2.5E-08 47.2 10.4 79 80-174 3-85 (92)
33 cd06488 p23_melusin_like p23_l 97.6 0.001 2.2E-08 47.4 10.0 79 80-174 2-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.5 0.002 4.2E-08 45.6 9.8 75 81-174 1-77 (85)
35 cd00237 p23 p23 binds heat sho 97.1 0.013 2.8E-07 43.5 10.7 79 78-174 1-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 96.9 0.018 3.8E-07 41.8 10.0 76 79-174 6-83 (93)
37 PLN03088 SGT1, suppressor of 96.5 0.021 4.6E-07 50.8 9.5 80 79-174 157-236 (356)
38 KOG1309 Suppressor of G2 allel 96.4 0.013 2.9E-07 47.3 6.9 79 79-173 4-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.0 0.18 4E-06 35.8 10.3 76 81-174 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.3 0.42 9.2E-06 34.0 10.3 74 82-174 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.4 0.85 1.8E-05 33.5 10.1 79 79-173 5-86 (102)
42 KOG3158 HSP90 co-chaperone p23 87.5 2.7 5.9E-05 33.9 6.8 83 75-175 4-86 (180)
43 PF13349 DUF4097: Domain of un 85.2 13 0.00027 28.6 9.6 83 79-169 66-148 (166)
44 PF14913 DPCD: DPCD protein fa 85.0 9.6 0.00021 31.2 8.9 77 78-173 86-170 (194)
45 cd06482 ACD_HspB10 Alpha cryst 80.6 4.1 8.9E-05 29.0 4.7 34 141-175 10-43 (87)
46 cd06470 ACD_IbpA-B_like Alpha- 76.8 9.4 0.0002 26.9 5.7 35 140-175 12-46 (90)
47 cd06476 ACD_HspB2_like Alpha c 74.5 8.4 0.00018 27.0 4.8 33 140-173 8-40 (83)
48 KOG2265 Nuclear distribution p 74.5 39 0.00084 27.4 9.0 79 77-174 17-97 (179)
49 PRK10743 heat shock protein Ib 73.8 12 0.00027 28.8 6.0 30 144-174 50-79 (137)
50 cd06497 ACD_alphaA-crystallin_ 73.3 9 0.00019 27.0 4.7 33 140-173 11-43 (86)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 73.1 9.7 0.00021 26.5 4.8 33 140-173 8-40 (83)
52 cd06477 ACD_HspB3_Like Alpha c 72.3 9.2 0.0002 26.9 4.6 33 141-174 9-41 (83)
53 cd06471 ACD_LpsHSP_like Group 72.0 10 0.00022 26.6 4.8 34 140-174 11-44 (93)
54 cd06479 ACD_HspB7_like Alpha c 71.2 11 0.00025 26.3 4.8 32 141-173 10-41 (81)
55 cd06472 ACD_ScHsp26_like Alpha 70.0 21 0.00046 25.0 6.1 34 140-174 10-44 (92)
56 cd06526 metazoan_ACD Alpha-cry 67.4 13 0.00028 25.6 4.5 35 140-175 8-42 (83)
57 cd06481 ACD_HspB9_like Alpha c 67.4 21 0.00045 25.1 5.6 33 141-174 9-41 (87)
58 cd06475 ACD_HspB1_like Alpha c 65.2 19 0.00041 25.3 5.0 33 140-173 11-43 (86)
59 PRK11597 heat shock chaperone 64.3 23 0.0005 27.5 5.7 32 141-173 45-76 (142)
60 cd06498 ACD_alphaB-crystallin_ 62.7 20 0.00044 25.0 4.7 33 140-173 8-40 (84)
61 PF00011 HSP20: Hsp20/alpha cr 61.7 25 0.00055 24.8 5.3 32 140-172 8-39 (102)
62 KOG1667 Zn2+-binding protein M 61.3 43 0.00092 28.9 7.1 86 76-176 212-297 (320)
63 PF08308 PEGA: PEGA domain; I 58.6 33 0.00072 22.6 5.1 40 81-120 27-67 (71)
64 cd06480 ACD_HspB8_like Alpha-c 57.8 22 0.00048 25.5 4.3 31 88-118 58-89 (91)
65 COG5091 SGT1 Suppressor of G2 56.1 6.2 0.00013 34.4 1.3 79 80-173 178-256 (368)
66 COG0071 IbpA Molecular chapero 54.3 43 0.00092 25.7 5.7 28 145-173 56-83 (146)
67 PRK05518 rpl6p 50S ribosomal p 52.6 71 0.0015 25.8 6.9 46 100-170 12-57 (180)
68 cd06464 ACD_sHsps-like Alpha-c 51.4 41 0.0009 22.5 4.8 35 140-175 8-42 (88)
69 TIGR03653 arch_L6P archaeal ri 49.5 95 0.002 24.8 7.1 45 101-170 7-51 (170)
70 PF12992 DUF3876: Domain of un 49.1 71 0.0015 23.1 5.8 39 78-117 25-68 (95)
71 TIGR03654 L6_bact ribosomal pr 45.9 99 0.0022 24.7 6.8 44 101-170 11-54 (175)
72 KOG3591 Alpha crystallins [Pos 43.6 31 0.00067 27.8 3.5 32 92-123 119-151 (173)
73 PF01954 DUF104: Protein of un 42.8 25 0.00054 23.3 2.3 32 154-187 3-34 (60)
74 PF04972 BON: BON domain; Int 41.5 51 0.0011 21.0 3.8 25 97-122 12-36 (64)
75 PRK05498 rplF 50S ribosomal pr 41.1 1.2E+02 0.0026 24.3 6.6 44 101-170 12-55 (178)
76 PF14814 UB2H: Bifunctional tr 41.0 66 0.0014 22.4 4.5 37 129-165 31-68 (85)
77 PTZ00027 60S ribosomal protein 40.3 1.1E+02 0.0024 24.9 6.3 48 100-170 12-59 (190)
78 cd06467 p23_NUDC_like p23_like 40.0 62 0.0013 21.8 4.2 30 141-170 10-39 (85)
79 cd01759 PLAT_PL PLAT/LH2 domai 38.2 1.7E+02 0.0036 21.8 7.6 47 140-192 45-92 (113)
80 cd06494 p23_NUDCD2_like p23-li 35.4 1.6E+02 0.0035 21.0 5.8 31 139-169 15-45 (93)
81 CHL00140 rpl6 ribosomal protei 33.5 1.9E+02 0.0042 23.1 6.7 44 101-170 12-55 (178)
82 cd02175 GH16_lichenase lichena 33.3 1.2E+02 0.0026 24.5 5.6 48 100-150 30-80 (212)
83 KOG3413 Mitochondrial matrix p 32.6 20 0.00044 28.2 0.8 26 147-172 65-90 (156)
84 PTZ00179 60S ribosomal protein 29.9 1.9E+02 0.0041 23.5 6.1 19 101-120 12-30 (189)
85 cd07698 IgC_MHC_I_alpha3 Class 29.5 1.9E+02 0.0042 19.9 8.0 67 87-163 14-82 (93)
86 cd00503 Frataxin Frataxin is a 29.5 54 0.0012 24.1 2.6 18 154-171 28-45 (105)
87 PF14730 DUF4468: Domain of un 29.3 2E+02 0.0044 20.1 6.3 17 155-171 69-85 (91)
88 PF00347 Ribosomal_L6: Ribosom 28.4 1.4E+02 0.0031 19.7 4.5 46 101-170 2-47 (77)
89 PRK00446 cyaY frataxin-like pr 28.4 54 0.0012 24.1 2.4 17 156-172 29-45 (105)
90 PF01491 Frataxin_Cyay: Fratax 27.4 74 0.0016 23.4 3.0 18 155-172 31-48 (109)
91 cd02178 GH16_beta_agarase Beta 26.7 1.4E+02 0.003 25.1 5.0 44 106-150 60-110 (258)
92 TIGR03421 FeS_CyaY iron donor 26.5 56 0.0012 23.9 2.2 17 155-171 26-42 (102)
93 PF14545 DBB: Dof, BCAP, and B 26.2 1.4E+02 0.0031 23.2 4.5 34 86-121 47-83 (142)
94 KOG3260 Calcyclin-binding prot 25.2 3E+02 0.0065 22.6 6.3 78 81-174 77-155 (224)
95 PF06964 Alpha-L-AF_C: Alpha-L 24.7 2.7E+02 0.0058 21.7 6.1 27 146-172 150-176 (177)
96 cd08023 GH16_laminarinase_like 24.5 3.9E+02 0.0084 21.7 7.6 52 96-150 32-91 (235)
97 cd02179 GH16_beta_GRP beta-1,3 23.4 5E+02 0.011 22.8 8.0 14 107-121 42-55 (321)
98 cd02182 GH16_Strep_laminarinas 22.5 1.6E+02 0.0035 24.7 4.6 10 140-149 89-98 (259)
99 COG0097 RplF Ribosomal protein 22.4 3.8E+02 0.0083 21.7 6.4 20 100-120 11-30 (178)
100 PRK10568 periplasmic protein; 22.3 1.6E+02 0.0034 24.0 4.3 24 97-121 73-96 (203)
101 TIGR00251 conserved hypothetic 21.8 1.8E+02 0.004 20.6 4.0 35 83-119 1-38 (87)
102 TIGR03422 mito_frataxin fratax 21.6 64 0.0014 23.4 1.7 16 157-172 30-45 (97)
103 cd00413 Glyco_hydrolase_16 gly 21.5 2.7E+02 0.0058 22.0 5.6 48 100-150 28-79 (210)
104 PF03983 SHD1: SLA1 homology d 21.5 1E+02 0.0023 21.1 2.6 35 82-116 14-48 (70)
105 PF07873 YabP: YabP family; I 20.1 82 0.0018 20.8 1.9 24 97-121 21-44 (66)
106 TIGR02934 nifT_nitrog probable 20.0 1E+02 0.0023 20.9 2.3 22 162-187 10-31 (67)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=1.5e-27 Score=185.17 Aligned_cols=102 Identities=27% Similarity=0.446 Sum_probs=90.4
Q ss_pred ceeeEEE-CCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 79 ARVDWKE-TPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 79 p~~di~e-~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
|++||++ ++++|.|+++|||++++||+|++++| +|+|+|+++.+. ++.+|+++||++|+|+|+|.||++||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 6799994 89999999999999999999999987 799999976542 4567999999999999999999999999 5
Q ss_pred EEEECCEEEEEEeccCCCCCCCCeEEEec
Q 028798 158 AKLENGVLTLSLKKLSPDQIKGPRVVGIA 186 (203)
Q Consensus 158 A~~~dGvL~I~lPK~~~~~~~~~r~I~I~ 186 (203)
|+|+||||+|++||..++..+ +|+|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~-~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKK-PRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccC-CeEEeeC
Confidence 999999999999997554434 8999984
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=1.1e-27 Score=186.56 Aligned_cols=104 Identities=23% Similarity=0.431 Sum_probs=91.8
Q ss_pred ceeeEEE-CCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 79 ARVDWKE-TPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 79 p~~di~e-~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
|++||+| ++++|+|+++|||++++||+|.+++| .|+|+|+++.+ .++.+|+++||++|+|+|+|.||++||.+ +
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~ 107 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS--G 107 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC--c
Confidence 6799998 57899999999999999999999987 79999997643 35678999999999999999999999998 7
Q ss_pred EEEECCEEEEEEeccCCCCCCCCeEEEeccC
Q 028798 158 AKLENGVLTLSLKKLSPDQIKGPRVVGIAGG 188 (203)
Q Consensus 158 A~~~dGvL~I~lPK~~~~~~~~~r~I~I~~~ 188 (203)
|+|+||||+|++||..++..+ +|+|+|+..
T Consensus 108 A~~~nGVL~I~lPK~~~~~~~-~rkI~I~~~ 137 (142)
T PRK11597 108 ATFVNGLLHIDLIRNEPEAIA-PQRIAISER 137 (142)
T ss_pred CEEcCCEEEEEEeccCccccC-CcEEEECCc
Confidence 999999999999998554434 899999753
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.6e-27 Score=182.99 Aligned_cols=108 Identities=39% Similarity=0.691 Sum_probs=99.6
Q ss_pred CCceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCe
Q 028798 77 SPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSV 156 (203)
Q Consensus 77 ~~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 156 (203)
..|++||+++++.|.|.++|||++++||+|.++++ .|+|+|++..+...++..++++|+.+|.|+|+|.||..|+.+.|
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 34689999999999999999999999999999998 69999999887777888999999999999999999999999999
Q ss_pred EEEEECCEEEEEEeccCCCCCCCCeEEEec
Q 028798 157 QAKLENGVLTLSLKKLSPDQIKGPRVVGIA 186 (203)
Q Consensus 157 ~A~~~dGvL~I~lPK~~~~~~~~~r~I~I~ 186 (203)
+|+|+||+|+|++||..+++.+ +++|.|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~-~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKK-PKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEecccccccc-CceeecC
Confidence 9999999999999999988633 7888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=6e-26 Score=164.64 Aligned_cols=92 Identities=67% Similarity=1.151 Sum_probs=86.0
Q ss_pred eeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 028798 80 RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAK 159 (203)
Q Consensus 80 ~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 159 (203)
++||+|++++|.|.++|||++++||+|++.++++|+|+|++..+...++..+++.|+.+|+|.|+|.||.+|+.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999975579999998776666778899999999999999999999999999999
Q ss_pred EECCEEEEEEec
Q 028798 160 LENGVLTLSLKK 171 (203)
Q Consensus 160 ~~dGvL~I~lPK 171 (203)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=4.4e-24 Score=156.92 Aligned_cols=102 Identities=39% Similarity=0.695 Sum_probs=85.5
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE 161 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 161 (203)
||.+++++|.|.++|||+.+++|+|+++++ .|+|+|++. ....+..++..|++++.|.|+|.||+++|.++|+|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 789999999999999999999999999988 699999987 34456678888999999999999999999999999999
Q ss_pred CCEEEEEEeccCCCCCCCCeEEEec
Q 028798 162 NGVLTLSLKKLSPDQIKGPRVVGIA 186 (203)
Q Consensus 162 dGvL~I~lPK~~~~~~~~~r~I~I~ 186 (203)
||+|+|++||....+...+++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999998876558999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=5.2e-24 Score=154.52 Aligned_cols=90 Identities=38% Similarity=0.665 Sum_probs=82.0
Q ss_pred eeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeee--ccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 80 RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEE--KKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 80 ~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
++||+|++++|+|.++|||++++||+|.+.++ .|+|+|+++...+ ..+..++++|+.+|+|.|+|.|| +++.+.|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 69999999999999999999999999999987 7999999875432 23357999999999999999999 79999999
Q ss_pred EEEECCEEEEEEec
Q 028798 158 AKLENGVLTLSLKK 171 (203)
Q Consensus 158 A~~~dGvL~I~lPK 171 (203)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999997
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.91 E-value=2.1e-23 Score=150.88 Aligned_cols=89 Identities=35% Similarity=0.542 Sum_probs=81.5
Q ss_pred ceeeEEECC-CeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 79 ARVDWKETP-EGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 79 p~~di~e~~-d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
|+++|++++ ++|+|.++|||+++++|+|.++++ .|+|+|+++.+.. .+.+|+++|+.+|+|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 569999975 999999999999999999999987 7999999987665 6678999999999999999999999875 9
Q ss_pred EEEECCEEEEEEec
Q 028798 158 AKLENGVLTLSLKK 171 (203)
Q Consensus 158 A~~~dGvL~I~lPK 171 (203)
|+|+||+|+|++|+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=2.1e-22 Score=144.62 Aligned_cols=82 Identities=26% Similarity=0.502 Sum_probs=73.2
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL- 160 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 160 (203)
+|++++++|.|.++|||++++||+|++.++ .|+|+|++.... ++.+|+++| |+|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 689999999999999999999999999987 799999865332 344566665 99999999999999999999
Q ss_pred ECCEEEEEEec
Q 028798 161 ENGVLTLSLKK 171 (203)
Q Consensus 161 ~dGvL~I~lPK 171 (203)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 79999999997
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=6.1e-22 Score=141.27 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=72.0
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL- 160 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 160 (203)
++.+++++|.|.++||||+++||+|++.++ .|+|+|++..+. ++.+|+++| |+|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence 467899999999999999999999999987 799999875332 344566655 99999999999999999999
Q ss_pred ECCEEEEEEec
Q 028798 161 ENGVLTLSLKK 171 (203)
Q Consensus 161 ~dGvL~I~lPK 171 (203)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 59999999997
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=6.8e-22 Score=141.35 Aligned_cols=82 Identities=22% Similarity=0.421 Sum_probs=71.7
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE-
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE- 161 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~- 161 (203)
+.+++++|.|.++||||+++||+|.+.++ .|+|+|++..+. ++.+|+++ .|+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 56789999999999999999999999987 799999875433 34456654 3999999999999999999996
Q ss_pred CCEEEEEEecc
Q 028798 162 NGVLTLSLKKL 172 (203)
Q Consensus 162 dGvL~I~lPK~ 172 (203)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=6.5e-22 Score=140.47 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=71.0
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL- 160 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~- 160 (203)
+|.|++++|.|.++||||+|+||+|++.++ .|+|+|+++.+. + ..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~---~-------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASD---G-------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccC---C-------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 678999999999999999999999999998 799999975332 1 2478899999999999999999998
Q ss_pred ECCEEEEEEec
Q 028798 161 ENGVLTLSLKK 171 (203)
Q Consensus 161 ~dGvL~I~lPK 171 (203)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 89999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=4.1e-21 Score=137.01 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=69.8
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE-
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE- 161 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~- 161 (203)
+..++++|.|.++||||+++||+|++.++ .|+|+|++.... ++.+++++| |+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~~~e-----F~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRM--DRHGFVSRE-----FTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccee--cCCCEEEEE-----EEEEEECCCCCChhhEEEEecC
Confidence 34578999999999999999999999988 799999975432 334455544 999999999999999999997
Q ss_pred CCEEEEEEec
Q 028798 162 NGVLTLSLKK 171 (203)
Q Consensus 162 dGvL~I~lPK 171 (203)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=4.1e-21 Score=138.18 Aligned_cols=83 Identities=28% Similarity=0.518 Sum_probs=72.5
Q ss_pred ECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE-ECC
Q 028798 85 ETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL-ENG 163 (203)
Q Consensus 85 e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~-~dG 163 (203)
+..++|.|.++||||+++||+|++.++ .|+|+|++..+.+.....|. +.+|+|.|+|.||++||.++|+|.| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 467899999999999999999999987 79999998765544444554 3578999999999999999999999 899
Q ss_pred EEEEEEec
Q 028798 164 VLTLSLKK 171 (203)
Q Consensus 164 vL~I~lPK 171 (203)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 14
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.85 E-value=1e-20 Score=135.87 Aligned_cols=82 Identities=23% Similarity=0.467 Sum_probs=71.7
Q ss_pred eeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE
Q 028798 81 VDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL 160 (203)
Q Consensus 81 ~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~ 160 (203)
.+|+|++++|.|.++|||+++++|+|.+.++ .|+|+|++..++. ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 5899999999999999999999999999987 7999998754322 23333 24699999999999999999999
Q ss_pred E-CCEEEEEEe
Q 028798 161 E-NGVLTLSLK 170 (203)
Q Consensus 161 ~-dGvL~I~lP 170 (203)
+ ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 7 999999998
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.84 E-value=1.2e-20 Score=135.57 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=70.6
Q ss_pred CCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECC-E
Q 028798 86 TPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENG-V 164 (203)
Q Consensus 86 ~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dG-v 164 (203)
+++.|+|.++|||++++||+|++.+| .|+|+|+++.+++..+ ..|+++|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 68899999999999999999999987 7999999876543322 2478999999999999999999999999955 9
Q ss_pred EEEEEe
Q 028798 165 LTLSLK 170 (203)
Q Consensus 165 L~I~lP 170 (203)
|+|..|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999987
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=4.3e-20 Score=130.97 Aligned_cols=88 Identities=49% Similarity=0.813 Sum_probs=80.2
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE 161 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 161 (203)
++.|++++|.|.++|||+++++|+|++.++ .|.|+|++........ .+...++.++.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 467899999999999999999999999987 7999999876554433 78889999999999999999999999999999
Q ss_pred CCEEEEEEec
Q 028798 162 NGVLTLSLKK 171 (203)
Q Consensus 162 dGvL~I~lPK 171 (203)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=5.5e-20 Score=131.11 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=68.0
Q ss_pred EECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEE-EC
Q 028798 84 KETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL-EN 162 (203)
Q Consensus 84 ~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~-~d 162 (203)
.+++++|.|+++||||+|+||+|.+.++ .|+|+|++..+.+ +.++.. ++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~--~~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMD--EHGFIS-----RSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccC--CCCEEE-----EEEEEEEECCCCcchheEEEEEcCC
Confidence 3688999999999999999999999998 7999999865432 233332 3699999999999999999998 79
Q ss_pred CEEEEEEe
Q 028798 163 GVLTLSLK 170 (203)
Q Consensus 163 GvL~I~lP 170 (203)
|+|+|+++
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=7.1e-20 Score=130.34 Aligned_cols=77 Identities=39% Similarity=0.610 Sum_probs=67.2
Q ss_pred CCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEEC-CEE
Q 028798 87 PEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLEN-GVL 165 (203)
Q Consensus 87 ~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~d-GvL 165 (203)
+++|.|.++||||+++||+|+++++ .|+|+|++..... +.. +.+++|.|+|.||.+||.++|+|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEERED--EHG-----YVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeecc--CCC-----EEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 4699999999999999999999987 7999999865433 122 345779999999999999999999997 999
Q ss_pred EEEEec
Q 028798 166 TLSLKK 171 (203)
Q Consensus 166 ~I~lPK 171 (203)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-17 Score=134.48 Aligned_cols=106 Identities=28% Similarity=0.429 Sum_probs=91.1
Q ss_pred ceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 79 ARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
...++..++++|.|.+|+..|+|++|+|++.|+ .|.|+|++...+ ++.++..++ |.|+|.||++||+++|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~--d~~G~v~R~-----F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKE--DEHGYVSRS-----FVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeecccc--CCCCeEEEE-----EEEEecCCCCCChhheEE
Confidence 357888899999999999999999999999998 799999875433 444555543 999999999999999999
Q ss_pred EEE-CCEEEEEEeccCCCCCCCCeEEEeccCCCCcc
Q 028798 159 KLE-NGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPA 193 (203)
Q Consensus 159 ~~~-dGvL~I~lPK~~~~~~~~~r~I~I~~~~~~~~ 193 (203)
.++ ||+|+|++||...... ..|.|+|+..+..+.
T Consensus 135 ~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~~~~ 169 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGPSAL 169 (173)
T ss_pred eeCCCceEEEEccCCCCcCc-cceEEeEeecCcccc
Confidence 999 9999999999998765 379999998876653
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=1.3e-17 Score=120.65 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=69.9
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE-
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE- 161 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~- 161 (203)
+..++++|.|.+++.||+++||+|++.++ .|+|+|++..+.. ++ ++++ ++|+|+|.||++||.+.|+|.|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~-e~-g~~~-----r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQK-EG-GIVS-----KNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccC-CC-CEEE-----EEEEEEEECCCCCCchhEEEEeCC
Confidence 44678999999999999999999999988 6999999875542 22 3443 55999999999999999999999
Q ss_pred CCEEEEEEec
Q 028798 162 NGVLTLSLKK 171 (203)
Q Consensus 162 dGvL~I~lPK 171 (203)
||+|+|++|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.3e-18 Score=140.22 Aligned_cols=108 Identities=49% Similarity=0.877 Sum_probs=95.1
Q ss_pred CceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeec--cCCeEEEEeeeeeEEEEEEECCCCcccCC
Q 028798 78 PARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEK--KGDQWHRVERSHGKFWRQFKLPDNVDLDS 155 (203)
Q Consensus 78 ~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 155 (203)
.+.+++.++.+.|.+.+++||+++++|+|.++++++|+|+|+++.+.+. .+..|+..|+++|.|.|++.||++++.+.
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 3568889999999999999999999999999988789999999877654 67789999999999999999999999999
Q ss_pred eEEEEECCEEEEEEeccCCC--CCCCCeEEEec
Q 028798 156 VQAKLENGVLTLSLKKLSPD--QIKGPRVVGIA 186 (203)
Q Consensus 156 i~A~~~dGvL~I~lPK~~~~--~~~~~r~I~I~ 186 (203)
|+|.|+||+|+|++||..+. +.. .+.|.|.
T Consensus 164 ikA~~~nGVL~VvvpK~~~~~~~~~-v~~i~i~ 195 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEPLLKKPK-VRQIAIS 195 (196)
T ss_pred HHHHhhCCeEEEEEecccccccCCc-cceeecc
Confidence 99999999999999999984 322 4445543
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.52 E-value=1.3e-13 Score=94.19 Aligned_cols=80 Identities=50% Similarity=0.888 Sum_probs=69.9
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEEC
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLEN 162 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~d 162 (203)
|.++++.|.|++++||+.+++|+|.+.++ .|.|+|.+..... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 46788999999999999999999999987 6999998754322 33445779999999999999999999999
Q ss_pred CEEEEEEec
Q 028798 163 GVLTLSLKK 171 (203)
Q Consensus 163 GvL~I~lPK 171 (203)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.26 E-value=5.2e-11 Score=82.98 Aligned_cols=71 Identities=30% Similarity=0.452 Sum_probs=64.2
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEEC
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLEN 162 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~d 162 (203)
|.++++.+.|++++||+++++++|.++++ .|.|+|. .|.+.+.||..|+++..+|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 46789999999999999999999999987 6888871 28899999999999999999999
Q ss_pred CEEEEEEeccCC
Q 028798 163 GVLTLSLKKLSP 174 (203)
Q Consensus 163 GvL~I~lPK~~~ 174 (203)
|.|.|+++|..+
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999864
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.94 E-value=8.8e-09 Score=82.58 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=62.9
Q ss_pred ceeeEEECCC-eEEEEEEeCCCCCcc-eEEEEEcC-eEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCC
Q 028798 79 ARVDWKETPE-GHFIMLDVPGVKRDE-LKIEVEEN-RVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDS 155 (203)
Q Consensus 79 p~~di~e~~d-~y~i~~~LPG~~~ed-I~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 155 (203)
+.+++.+.++ .++|.++|||+++++ |+|.++.+ ..|+|+.. +.+.+++.||.. +.+.
T Consensus 92 ~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~~e~ 151 (177)
T PF05455_consen 92 IHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-DPEI 151 (177)
T ss_pred eeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-ccce
Confidence 5789998888 589999999999888 99999954 24555531 126789999976 6888
Q ss_pred eEEEEECCEEEEEEeccCCCC
Q 028798 156 VQAKLENGVLTLSLKKLSPDQ 176 (203)
Q Consensus 156 i~A~~~dGvL~I~lPK~~~~~ 176 (203)
++|+|.||||+|++-+.....
T Consensus 152 ~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 152 TSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeEEEeCceEEEEEeecCCCC
Confidence 999999999999999887654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.93 E-value=1.2e-08 Score=70.92 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=66.0
Q ss_pred EEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEEC
Q 028798 83 WKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLEN 162 (203)
Q Consensus 83 i~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~d 162 (203)
|.++++.+.|.+.+||..+++++|.+.++ .|.|++... . .+.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGG-----G----------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCC-----C----------CCceEEeeEccCccchhhcEEEEeC
Confidence 45788999999999999999999999987 699998542 1 1338888999999999999999999
Q ss_pred CEEEEEEeccCC
Q 028798 163 GVLTLSLKKLSP 174 (203)
Q Consensus 163 GvL~I~lPK~~~ 174 (203)
|.|.|+++|+.+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.67 E-value=1.8e-07 Score=65.77 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=66.1
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE 161 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 161 (203)
||+++++.+.|.+.+||+.++++.|.++++ .|.|++... . .+.|...+.|...|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 578899999999999999999999999987 588886431 0 123778889999999999999999
Q ss_pred CCEEEEEEeccCC
Q 028798 162 NGVLTLSLKKLSP 174 (203)
Q Consensus 162 dGvL~I~lPK~~~ 174 (203)
+|.|.|+|.|...
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.42 E-value=1e-05 Score=55.50 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=62.6
Q ss_pred ceeeEEECCCeEEEEEEeCCC--CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCe
Q 028798 79 ARVDWKETPEGHFIMLDVPGV--KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSV 156 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 156 (203)
|+++|.++++...|.+.+++. ++++|+|.+.++ .|.|+...... ..|.-.+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 578999999999999999665 499999999987 58888542211 127777889999999999
Q ss_pred EEEEECCEEEEEEec
Q 028798 157 QAKLENGVLTLSLKK 171 (203)
Q Consensus 157 ~A~~~dGvL~I~lPK 171 (203)
+..+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.01 E-value=0.0001 Score=54.51 Aligned_cols=78 Identities=17% Similarity=0.349 Sum_probs=65.2
Q ss_pred ceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 79 ARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
|.++|+++.+...|.+.+||. +++.|.+..+ .|.|++.... ++ ..|.-.+.|...|+++.-+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~----~~----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGG----GG----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCC----CC----------eeEEEEeEhhhhccccccEE
Confidence 468999999999999999998 8899999987 5889874210 11 12666779999999999999
Q ss_pred EEECCEEEEEEeccC
Q 028798 159 KLENGVLTLSLKKLS 173 (203)
Q Consensus 159 ~~~dGvL~I~lPK~~ 173 (203)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.95 E-value=4.6e-05 Score=66.49 Aligned_cols=65 Identities=31% Similarity=0.565 Sum_probs=56.7
Q ss_pred CCeEEEEEEeCCC-CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE--CC
Q 028798 87 PEGHFIMLDVPGV-KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE--NG 163 (203)
Q Consensus 87 ~d~y~i~~~LPG~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~--dG 163 (203)
.+.++|+++|||+ +..+|+|.|.+. .|.|..... .|.-.+.||..|+.+..+|.|. .+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5788999999999 789999999987 588875321 2778899999999999999999 79
Q ss_pred EEEEEEe
Q 028798 164 VLTLSLK 170 (203)
Q Consensus 164 vL~I~lP 170 (203)
+|+|++|
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.89 E-value=0.00017 Score=50.88 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=63.2
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEE
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLE 161 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~ 161 (203)
||+++++...|++.++|+.++++.|.+.++ .|.+++... ++. .|.-.+.|...|+++.-+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLP-----SGN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECC-----CCC----------cEEEeeecCceecchhcEEEEe
Confidence 578899999999999999999999999987 588887431 111 2666678999999997788888
Q ss_pred CCEEEEEEeccCC
Q 028798 162 NGVLTLSLKKLSP 174 (203)
Q Consensus 162 dGvL~I~lPK~~~ 174 (203)
.+-+.|+|.|+..
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999753
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.70 E-value=0.00049 Score=48.27 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=60.0
Q ss_pred eeEEECCCeEEEEEEeC-CCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 028798 81 VDWKETPEGHFIMLDVP-GVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAK 159 (203)
Q Consensus 81 ~di~e~~d~y~i~~~LP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 159 (203)
+.|.++++...|.+.+| ++.++||+|.+.++ .|.|+... +. +.-.-.|...|+++...-+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~--------~~----------~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG--------GE----------PLLDGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC--------CC----------ceEcCcccCceeEcCCEEE
Confidence 36788999999999997 78999999999987 58887531 11 1122368889999988888
Q ss_pred EEC-CEEEEEEeccCC
Q 028798 160 LEN-GVLTLSLKKLSP 174 (203)
Q Consensus 160 ~~d-GvL~I~lPK~~~ 174 (203)
+.+ ..|.|+++|+.+
T Consensus 62 ~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 62 LEDGKLLEITLEKRNE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 899 999999999875
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.62 E-value=0.0012 Score=47.19 Aligned_cols=79 Identities=15% Similarity=0.350 Sum_probs=63.7
Q ss_pred eeeEEECCCeEEEEEEeCCCCC---cceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEE-ECCCCcccCC
Q 028798 80 RVDWKETPEGHFIMLDVPGVKR---DELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQF-KLPDNVDLDS 155 (203)
Q Consensus 80 ~~di~e~~d~y~i~~~LPG~~~---edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~-~LP~~vd~~~ 155 (203)
.++|+++++...|.+.+|+..+ ++++|.+..+ .|.|++... ++.. |.-.+ .|-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~-----~~~~----------~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDL-----NGKN----------YRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECC-----CCcE----------EEEEehHhhCccCccc
Confidence 5789999999999999999987 9999999987 588887321 1111 44444 4889999998
Q ss_pred eEEEEECCEEEEEEeccCC
Q 028798 156 VQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 156 i~A~~~dGvL~I~lPK~~~ 174 (203)
-+.++..+-+.|++.|+.+
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 8888899999999999874
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.62 E-value=0.001 Score=47.35 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=65.2
Q ss_pred eeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 028798 80 RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAK 159 (203)
Q Consensus 80 ~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 159 (203)
+.||+++++...|.+.+.|..++++.+.++++ .|.|+..... +. .|.-.+.|-..|+++..+..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~-----~~----------~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEG-----NK----------EFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCC-----Cc----------eEEEEeeccceEChhHcEEE
Confidence 47899999999999999999999999999976 5777753211 11 27777899999999987777
Q ss_pred EECCEEEEEEeccCC
Q 028798 160 LENGVLTLSLKKLSP 174 (203)
Q Consensus 160 ~~dGvL~I~lPK~~~ 174 (203)
...+-+.|++.|+.+
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 789999999999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.47 E-value=0.002 Score=45.63 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=57.8
Q ss_pred eeEEECCCeEEEEEEeC-CCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 028798 81 VDWKETPEGHFIMLDVP-GVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAK 159 (203)
Q Consensus 81 ~di~e~~d~y~i~~~LP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 159 (203)
++|.++.+...|.+.+| |..++||+|.+..+ .|.|... . +.. + -.-.|...|+++.-.-.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~--~-----~~~----------~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK--D-----QAP----------L-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC--C-----CCe----------E-EeCcccCcccccCcEEE
Confidence 36789999999999996 99999999999987 4777641 0 000 1 12278889999977767
Q ss_pred EECC-EEEEEEeccCC
Q 028798 160 LENG-VLTLSLKKLSP 174 (203)
Q Consensus 160 ~~dG-vL~I~lPK~~~ 174 (203)
+++| .|.|++.|+.+
T Consensus 62 i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 62 IKENKSLEVSLIKKDE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 7777 79999999864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.07 E-value=0.013 Score=43.49 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=60.7
Q ss_pred CceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 78 PARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 78 ~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
||.++|.+..+...|++.+|+ .+|++|.++++ .|.++|.-. ++.. |.-.+.|=..|+++.-+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~-----~g~~----------y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG-----DNVK----------IYNEIELYDRVDPNDSK 62 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC-----CCcE----------EEEEEEeecccCcccCe
Confidence 478999999999999999998 68999999987 599998321 2222 44566788888888656
Q ss_pred EEEECCEEEEEEeccCC
Q 028798 158 AKLENGVLTLSLKKLSP 174 (203)
Q Consensus 158 A~~~dGvL~I~lPK~~~ 174 (203)
.+...--+.|.+.|++.
T Consensus 63 ~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 63 HKRTDRSILCCLRKGKE 79 (106)
T ss_pred EEeCCceEEEEEEeCCC
Confidence 55556678889999864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.92 E-value=0.018 Score=41.79 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=59.9
Q ss_pred ceeeEEECCCeEEEEEEeC-CCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeE
Q 028798 79 ARVDWKETPEGHFIMLDVP-GVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQ 157 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~ 157 (203)
+.+.|.++.+...|++.+| |.+++||.|.+..+ .|.|... +..+ +.. .|...|+++.-.
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~--------g~~~---------l~G--~L~~~I~~dest 65 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVK--------GQEV---------LKG--KLFDSVVADECT 65 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEEC--------CEEE---------EcC--cccCccCcccCE
Confidence 4789999999999999997 89999999999987 4777741 1000 111 678889999888
Q ss_pred EEEECCE-EEEEEeccCC
Q 028798 158 AKLENGV-LTLSLKKLSP 174 (203)
Q Consensus 158 A~~~dGv-L~I~lPK~~~ 174 (203)
-++++|- |.|+|.|...
T Consensus 66 Wtled~k~l~I~L~K~~~ 83 (93)
T cd06494 66 WTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred EEEECCcEEEEEEEeCCC
Confidence 8888775 8999999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.48 E-value=0.021 Score=50.75 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=65.9
Q ss_pred ceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 79 ARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
++.+|+++++...|.+.+.|+.++++.|.+.++ .|.|+.... .+. .|.-.+.|-..|+++..+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~ 220 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVP-----GED----------AYHLQPRLFGKIIPDKCKY 220 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecC-----CCc----------ceeecccccccccccccEE
Confidence 578999999999999999999999999999987 588875321 111 1555678999999998888
Q ss_pred EEECCEEEEEEeccCC
Q 028798 159 KLENGVLTLSLKKLSP 174 (203)
Q Consensus 159 ~~~dGvL~I~lPK~~~ 174 (203)
++...-+.|+|.|...
T Consensus 221 ~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 221 EVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEecceEEEEEecCCC
Confidence 8888899999999874
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.41 E-value=0.013 Score=47.28 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=61.8
Q ss_pred ceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 79 ARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
++.||+++.+..+|.+-.+|+.++|++|.+.++ +|.|..... .+.. |.-...|-..|.++..+-
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~-----~g~~----------~~l~~~L~~~I~pe~~s~ 67 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLP-----SGSE----------YNLQLKLYHEIIPEKSSF 67 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecC-----Cchh----------hhhhHHhcccccccceee
Confidence 478999999999999999999999999999987 576664332 1111 555556778888887666
Q ss_pred EEECCEEEEEEeccC
Q 028798 159 KLENGVLTLSLKKLS 173 (203)
Q Consensus 159 ~~~dGvL~I~lPK~~ 173 (203)
+.-.--+.|+|+|..
T Consensus 68 k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 68 KVFSTKVEITLAKAE 82 (196)
T ss_pred EeeeeeEEEEecccc
Confidence 666788999999965
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.96 E-value=0.18 Score=35.76 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=54.6
Q ss_pred eeEEECCCeEEEEEEeCCC--CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 81 VDWKETPEGHFIMLDVPGV--KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 81 ~di~e~~d~y~i~~~LPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
.||+++++..+|.+...+. .+.++.+....+ .|.|+-... + ..|...+.|=..|+.+. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~------~----------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG------D----------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC------C----------ceEEEeeeccccCCCCc-EE
Confidence 4799999999999998864 445555665654 577764321 1 11777778888898775 55
Q ss_pred EEE--CCEEEEEEeccCC
Q 028798 159 KLE--NGVLTLSLKKLSP 174 (203)
Q Consensus 159 ~~~--dGvL~I~lPK~~~ 174 (203)
++. -|-+.|++.|+++
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 555 8899999999864
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.33 E-value=0.42 Score=33.95 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=54.2
Q ss_pred eEEECCCeEEEEEEeC-C--CCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 82 DWKETPEGHFIMLDVP-G--VKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 82 di~e~~d~y~i~~~LP-G--~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
.+.++.+...|++.|| | .++.||+|.+..+ .|.|.-+ +.... +.. .|...|+++.-.=
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~--------g~~~~--------i~G--~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLK--------GQPPI--------IDG--ELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEEC--------CCceE--------EeC--cccCcccccccEE
Confidence 4567888899999996 3 7899999999987 4777531 11110 111 6778899987777
Q ss_pred EEECC-EEEEEEeccCC
Q 028798 159 KLENG-VLTLSLKKLSP 174 (203)
Q Consensus 159 ~~~dG-vL~I~lPK~~~ 174 (203)
.+++| .|.|++-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 78886 89999999854
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.45 E-value=0.85 Score=33.55 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=57.9
Q ss_pred ceeeEEECCCeEEEEEEeC-CC-CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCe
Q 028798 79 ARVDWKETPEGHFIMLDVP-GV-KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSV 156 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i 156 (203)
..+.|.++-+...|++.|| |. +..+|.|.+... .|.|.-... .+.... +.. .|...|+.+.-
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~-----~~~~~~--------i~G--~L~~~V~~des 68 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDG-----GGEKVL--------MEG--EFTHKINTENS 68 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecC-----CCCceE--------EeC--cccCcccCccc
Confidence 3688999999999999999 54 679999999987 477764210 000000 111 68888999887
Q ss_pred EEEEECC-EEEEEEeccC
Q 028798 157 QAKLENG-VLTLSLKKLS 173 (203)
Q Consensus 157 ~A~~~dG-vL~I~lPK~~ 173 (203)
.=.+++| .|.|++-|..
T Consensus 69 ~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 69 LWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred eEEEeCCCEEEEEEEECC
Confidence 8889986 5899999985
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=2.7 Score=33.90 Aligned_cols=83 Identities=13% Similarity=0.300 Sum_probs=61.9
Q ss_pred cCCCceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccC
Q 028798 75 ALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLD 154 (203)
Q Consensus 75 ~~~~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~ 154 (203)
.+.+|.+.|.+..+-+-+++.|+ ...+.+|.+++. .|+++|+-.. +. |. +...+.|=..||++
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~-~l~fs~k~~~----d~---~~-------~~~~ief~~eIdpe 66 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPS-KLTFSCKSGA----DN---HK-------YENEIEFFDEIDPE 66 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEec--cCccceeecccc-EEEEEeccCC----Cc---ee-------eEEeeehhhhcCHh
Confidence 34568899999999989999999 566778888876 6999986541 11 11 66678888899999
Q ss_pred CeEEEEECCEEEEEEeccCCC
Q 028798 155 SVQAKLENGVLTLSLKKLSPD 175 (203)
Q Consensus 155 ~i~A~~~dGvL~I~lPK~~~~ 175 (203)
+.+-+-. +-++..++++...
T Consensus 67 ~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 67 KSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred hcccccc-ceEEEEEEEcccc
Confidence 8776666 7777777766544
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=85.16 E-value=13 Score=28.60 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred ceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 028798 79 ARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQA 158 (203)
Q Consensus 79 p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A 158 (203)
..+.|...++ ..+++.. ..+.+++..+++ .|.|+.+.... .-...+..... ...-.-.+.||++...++|+.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~--~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRES--FFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccc--cccceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 3577776444 4555555 212688998886 79998762111 00112222211 234667889999998889999
Q ss_pred EEECCEEEEEE
Q 028798 159 KLENGVLTLSL 169 (203)
Q Consensus 159 ~~~dGvL~I~l 169 (203)
...+|-++|.=
T Consensus 138 ~~~~G~i~i~~ 148 (166)
T PF13349_consen 138 KTSSGDITIED 148 (166)
T ss_pred EeccccEEEEc
Confidence 99999887654
No 44
>PF14913 DPCD: DPCD protein family
Probab=85.03 E-value=9.6 Score=31.22 Aligned_cols=77 Identities=21% Similarity=0.417 Sum_probs=56.0
Q ss_pred CceeeEEECCCeEEEEE-EeCCCCCcceEEEEEcC-eEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCC------
Q 028798 78 PARVDWKETPEGHFIML-DVPGVKRDELKIEVEEN-RVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPD------ 149 (203)
Q Consensus 78 ~p~~di~e~~d~y~i~~-~LPG~~~edI~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~------ 149 (203)
.|-+-=.++...|+-++ +|| +.++--+|.++++ +.++|+-.-+. |.++|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNKK------------------YyKk~~IPDl~R~~l 146 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNKK------------------YYKKFSIPDLDRCGL 146 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCcc------------------ceeEecCCcHHhhCC
Confidence 34455567888888876 455 5677788888855 46888754322 888899996
Q ss_pred CcccCCeEEEEECCEEEEEEeccC
Q 028798 150 NVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 150 ~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
..+.+.++..+.+..|.|+..|..
T Consensus 147 ~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 147 PLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred CcchhhceeeeecCeEEEEecCcH
Confidence 246777888889999999998754
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=80.58 E-value=4.1 Score=28.99 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=30.0
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEeccCCC
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPD 175 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~~ 175 (203)
|.-...|| +++.+.|+.++.+|.|+|+.-+....
T Consensus 10 ~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~ 43 (87)
T cd06482 10 VLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRY 43 (87)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccc
Confidence 77778999 78999999999999999999987644
No 46
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=76.83 E-value=9.4 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.8
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccCCC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPD 175 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~~ 175 (203)
.|.-.+.|| ++..+.|+-.+++|.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 488889999 68999999999999999999887665
No 47
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=74.53 E-value=8.4 Score=27.00 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
.|.-.+.|| ++.++.|+.++++|.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 388888999 689999999999999999998754
No 48
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=74.51 E-value=39 Score=27.37 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCceeeEEECCCeEEEEEEeC-CC-CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccC
Q 028798 77 SPARVDWKETPEGHFIMLDVP-GV-KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLD 154 (203)
Q Consensus 77 ~~p~~di~e~~d~y~i~~~LP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~ 154 (203)
..+.+.|..|=....|.+.+| |+ +..+|.|.+...+ |.|.-+... .+.. | .|...|+.+
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~h-I~V~~kg~~--------~ild----G------~L~~~vk~d 77 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKH-IKVGLKGQP--------PILD----G------ELSHSVKVD 77 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeE-EEEecCCCC--------ceec----C------ccccccccc
Confidence 335788888888899998885 88 8899999999764 555532110 1110 1 577788889
Q ss_pred CeEEEEECCEEEEEEeccCC
Q 028798 155 SVQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 155 ~i~A~~~dGvL~I~lPK~~~ 174 (203)
.-.-.+++|.+.|.+-++..
T Consensus 78 es~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 78 ESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred cceEEecCCEEEEEEeeccc
Confidence 88999999988888877765
No 49
>PRK10743 heat shock protein IbpA; Provisional
Probab=73.77 E-value=12 Score=28.77 Aligned_cols=30 Identities=3% Similarity=0.100 Sum_probs=25.4
Q ss_pred EEECCCCcccCCeEEEEECCEEEEEEeccCC
Q 028798 144 QFKLPDNVDLDSVQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 144 ~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~ 174 (203)
...|| +++.+.|+-.+++|+|+|+.-+...
T Consensus 50 ~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 50 AIAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 34788 8999999999999999999987654
No 50
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=73.25 E-value=9 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
.|.-.+.|| +++++.|+-++.+|.|+|+.-+..
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 388888999 799999999999999999997543
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=73.08 E-value=9.7 Score=26.53 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=29.0
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
.|.-.+.|| +++++.|+-++.+|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEce
Confidence 388889999 899999999999999999997543
No 52
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=72.33 E-value=9.2 Score=26.89 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=29.5
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEeccCC
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~ 174 (203)
|.-.+.|| +++++.|+-.+++|.|+|+.-+...
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 88888999 6899999999999999999987653
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=71.99 E-value=10 Score=26.63 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=29.6
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccCC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~ 174 (203)
.|.-.+.|| +++.+.|+-.+++|.|+|+.-+...
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~ 44 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDES 44 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 377788999 6999999999999999999988653
No 54
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=71.25 E-value=11 Score=26.27 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=28.9
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
|.-.+.|| +++++.|+-++++|.|+|+.-|..
T Consensus 10 ~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 10 YQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 88888999 799999999999999999998754
No 55
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=70.03 E-value=21 Score=24.99 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.2
Q ss_pred EEEEEEECCCCcccCCeEEEEECC-EEEEEEeccCC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENG-VLTLSLKKLSP 174 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dG-vL~I~lPK~~~ 174 (203)
.|.-.+.|| ++..+.|+-.+.+| +|+|+.-+...
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~ 44 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKE 44 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEeccc
Confidence 377888999 58999999999965 99999987543
No 56
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.36 E-value=13 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccCCC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPD 175 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~~ 175 (203)
.|.-.+.|| ++.++.|+-.++++.|+|+.-+....
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~ 42 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEERE 42 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeec
Confidence 488899999 59999999999999999999887643
No 57
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=67.35 E-value=21 Score=25.13 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=29.2
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEeccCC
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSP 174 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~ 174 (203)
|.-.+.|| ++.++.|+.+++++.|+|+.-+...
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 88888999 6899999999999999999987554
No 58
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=65.23 E-value=19 Score=25.29 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.3
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 388889999 799999999999999999997754
No 59
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=64.25 E-value=23 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=25.9
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
|.-...|| +++.+.|+-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 33344788 789999999999999999998654
No 60
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=62.68 E-value=20 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=28.5
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
.|.-.+.+| +++++.|+..+.+|.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 388888998 799999999999999999996543
No 61
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=61.67 E-value=25 Score=24.77 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=27.5
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEecc
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKL 172 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~ 172 (203)
.|.-.+.|| +++.+.|+-++.+|.|+|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 488889999 78999999999999999999988
No 62
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=61.29 E-value=43 Score=28.91 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCceeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCC
Q 028798 76 LSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDS 155 (203)
Q Consensus 76 ~~~p~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~ 155 (203)
..+-+.||..++...+|.+..-|.-++--.|..++- .|.|.-... +++ .+|...+.|=.-|+.+.
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~-----~gn---------a~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFG-----FGN---------ASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEec-----CCC---------ceeeccceeeeeechhh
Confidence 344578999999999999999999999888888864 577775432 111 22777788887889999
Q ss_pred eEEEEECCEEEEEEeccCCCC
Q 028798 156 VQAKLENGVLTLSLKKLSPDQ 176 (203)
Q Consensus 156 i~A~~~dGvL~I~lPK~~~~~ 176 (203)
-.+.+..--..|+|+|+.+..
T Consensus 277 s~v~m~~tkVEIsl~k~ep~s 297 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAEPGS 297 (320)
T ss_pred ceEEeecceEEEEEeccCCCC
Confidence 999999999999999998653
No 63
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=58.55 E-value=33 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.5
Q ss_pred eeEE-ECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEE
Q 028798 81 VDWK-ETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGER 120 (203)
Q Consensus 81 ~di~-e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~ 120 (203)
+.+. -..+.|.|++..+|+....-.|.+..+....|..+-
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 3444 347789999999999998888888876566676543
No 64
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=57.83 E-value=22 Score=25.46 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=26.1
Q ss_pred CeEEEEEEeC-CCCCcceEEEEEcCeEEEEEe
Q 028798 88 EGHFIMLDVP-GVKRDELKIEVEENRVLRVSG 118 (203)
Q Consensus 88 d~y~i~~~LP-G~~~edI~V~v~~~~~L~I~g 118 (203)
..|.=++.|| +++.+.|+-.+..+++|+|++
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4567789998 999999999999555899986
No 65
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=56.06 E-value=6.2 Score=34.39 Aligned_cols=79 Identities=22% Similarity=0.170 Sum_probs=58.6
Q ss_pred eeeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 028798 80 RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAK 159 (203)
Q Consensus 80 ~~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~ 159 (203)
.+++.+|.+...|-+.-|-++.++|++-+++| +|.|+-+... + .--|.-...|-..|+++..+-+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~-----~---------~~~~~~~~~Ly~ev~P~~~s~k 242 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRR-----L---------RLWNDITISLYKEVYPDIRSIK 242 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccc-----c---------chHHHhhhhhhhhcCcchhhhh
Confidence 45667777777787788999999999999998 7999854321 1 1115566678888988876666
Q ss_pred EECCEEEEEEeccC
Q 028798 160 LENGVLTLSLKKLS 173 (203)
Q Consensus 160 ~~dGvL~I~lPK~~ 173 (203)
.---++.|++-|..
T Consensus 243 ~fsK~~e~~l~KV~ 256 (368)
T COG5091 243 SFSKRVEVHLRKVE 256 (368)
T ss_pred hcchhheehhhhhh
Confidence 55678888888776
No 66
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=43 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.0
Q ss_pred EECCCCcccCCeEEEEECCEEEEEEeccC
Q 028798 145 FKLPDNVDLDSVQAKLENGVLTLSLKKLS 173 (203)
Q Consensus 145 ~~LP~~vd~~~i~A~~~dGvL~I~lPK~~ 173 (203)
+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 56 ~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 56 AELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 4677 799999999999999999999886
No 67
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=52.61 E-value=71 Score=25.83 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=31.3
Q ss_pred CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 100 KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 100 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
=|++|+|+++++ .++|+|.+ |...+.|.-+ .++...++|.|.|...
T Consensus 12 IP~~V~v~i~~~-~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEGL-VVTVKGPK------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEECC-EEEEECCC------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 368899999986 79999854 3344444322 3555678888888755
No 68
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=51.39 E-value=41 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=30.7
Q ss_pred EEEEEEECCCCcccCCeEEEEECCEEEEEEeccCCC
Q 028798 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPD 175 (203)
Q Consensus 140 ~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lPK~~~~ 175 (203)
.|.-.+.||. ++.+.|+-.+.++.|.|+..+....
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 4888899995 9999999999999999999888643
No 69
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=49.47 E-value=95 Score=24.83 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=30.7
Q ss_pred CcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
|++|+|++.++ .++|+|.+ |...+.+. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 68899999987 79999854 33444442 32 3455678888888754
No 70
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=49.13 E-value=71 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=30.0
Q ss_pred CceeeEEECCCeEEEEEEeCCC-----CCcceEEEEEcCeEEEEE
Q 028798 78 PARVDWKETPEGHFIMLDVPGV-----KRDELKIEVEENRVLRVS 117 (203)
Q Consensus 78 ~p~~di~e~~d~y~i~~~LPG~-----~~edI~V~v~~~~~L~I~ 117 (203)
.|.+.|+++++.|.|.+--+.. +++...|.-+++ .+-|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 3789999999999998866654 677777887776 45555
No 71
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=45.94 E-value=99 Score=24.73 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=30.3
Q ss_pred CcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
|++|+|+++++ .++|+|.+ |...+.| |.. +....+++.|.|...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~------------------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPK------------------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCC------------------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 68899999976 79999854 3355444 443 445567887777755
No 72
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=43.58 E-value=31 Score=27.75 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=26.7
Q ss_pred EEEEeC-CCCCcceEEEEEcCeEEEEEeEEeee
Q 028798 92 IMLDVP-GVKRDELKIEVEENRVLRVSGERKRE 123 (203)
Q Consensus 92 i~~~LP-G~~~edI~V~v~~~~~L~I~g~~~~~ 123 (203)
=+.-|| |++++.|.=.+..+++|+|+|.+...
T Consensus 119 R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 119 RKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 356677 99999999999987899999977643
No 73
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=42.76 E-value=25 Score=23.28 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=15.6
Q ss_pred CCeEEEEECCEEEEEEeccCCCCCCCCeEEEecc
Q 028798 154 DSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAG 187 (203)
Q Consensus 154 ~~i~A~~~dGvL~I~lPK~~~~~~~~~r~I~I~~ 187 (203)
..|.|.|+||+|.--=|-.-++.. ...|.|..
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg~--~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEGE--EVKITIEE 34 (60)
T ss_dssp --EEEEEETTEEEECS-----TTE--EEEEEE--
T ss_pred ceEEEEEECCEEEECCCCCCCCCC--EEEEEEec
Confidence 459999999999865443333221 24455554
No 74
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=41.49 E-value=51 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.1
Q ss_pred CCCCCcceEEEEEcCeEEEEEeEEee
Q 028798 97 PGVKRDELKIEVEENRVLRVSGERKR 122 (203)
Q Consensus 97 PG~~~edI~V~v~~~~~L~I~g~~~~ 122 (203)
++++..+|+|.+.++ .+.++|.-..
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 367777899999987 6999998753
No 75
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=41.11 E-value=1.2e+02 Score=24.30 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=30.1
Q ss_pred CcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
|++|+|+++++ .|+|+|.+ |...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~~-~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 58999999986 79999854 3355554 443 344567887777654
No 76
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=40.96 E-value=66 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=22.8
Q ss_pred CeEEEEeeeeeEEEEEEECCCCcccCC-eEEEEECCEE
Q 028798 129 DQWHRVERSHGKFWRQFKLPDNVDLDS-VQAKLENGVL 165 (203)
Q Consensus 129 ~~~~~~er~~g~F~r~~~LP~~vd~~~-i~A~~~dGvL 165 (203)
+.|.+....+.-|.|.|.+|++..+.. +.-.|.+|.+
T Consensus 31 G~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V 68 (85)
T PF14814_consen 31 GEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRV 68 (85)
T ss_dssp TEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEE
T ss_pred eEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEE
Confidence 344444444555999999999986665 7888887643
No 77
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=40.29 E-value=1.1e+02 Score=24.87 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 100 KRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 100 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
=|++|+|+++++ .++|+|.+ |...+.| |.. ...|....++|.|.|+.+
T Consensus 12 IP~~V~V~i~~~-~v~VkGp~------------------G~L~~~~--~~~--~~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKSR-KVTVTGKY------------------GELTRSF--RHL--PVDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEECC-EEEEECCC------------------ceEEEEe--cCC--CceEEEEeCCCEEEEEeC
Confidence 368999999986 79999854 3344433 321 024555677888777755
No 78
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=39.99 E-value=62 Score=21.84 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=26.2
Q ss_pred EEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 141 FWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 141 F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
..-.|.+|.+++.+.++..+++.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 566778999999999999999998999886
No 79
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=38.19 E-value=1.7e+02 Score=21.81 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred EEEEEEECCCCc-ccCCeEEEEECCEEEEEEeccCCCCCCCCeEEEeccCCCCc
Q 028798 140 KFWRQFKLPDNV-DLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEP 192 (203)
Q Consensus 140 ~F~r~~~LP~~v-d~~~i~A~~~dGvL~I~lPK~~~~~~~~~r~I~I~~~~~~~ 192 (203)
.|..-+....++ +...|+-.+++.++-...|+.. .++|.|++++.+.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~~~ 92 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKDGK 92 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCCcc
Confidence 366666666666 6666777777777766666664 5779999776554
No 80
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=35.37 E-value=1.6e+02 Score=20.96 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=27.4
Q ss_pred eEEEEEEECCCCcccCCeEEEEECCEEEEEE
Q 028798 139 GKFWRQFKLPDNVDLDSVQAKLENGVLTLSL 169 (203)
Q Consensus 139 g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~l 169 (203)
....-.|++|.++....+...++..-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 4466778899999999999999999999998
No 81
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=33.53 E-value=1.9e+02 Score=23.12 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=29.0
Q ss_pred CcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
|++|+|+++++ .|+|+|.+ |...+ .||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~~-~v~vkGp~------------------G~l~~--~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQ-IIKVKGPK------------------GTLSR--KIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC------------------EEEEE--ECCCC-----eEEEEeCCEEEEEcC
Confidence 57889999976 79999854 22333 45543 444567887777654
No 82
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=33.25 E-value=1.2e+02 Score=24.53 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=27.0
Q ss_pred CCcceEEEEEcCeEEEEEeEEeeee--eccCCeEE-EEeeeeeEEEEEEECCCC
Q 028798 100 KRDELKIEVEENRVLRVSGERKREE--EKKGDQWH-RVERSHGKFWRQFKLPDN 150 (203)
Q Consensus 100 ~~edI~V~v~~~~~L~I~g~~~~~~--~~~~~~~~-~~er~~g~F~r~~~LP~~ 150 (203)
++++++|+ ++ .|+|++.+.... .-....+. +....||.|+-++++|..
T Consensus 30 ~~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35665554 65 588887654311 00111121 223467999999999864
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=32.64 E-value=20 Score=28.16 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=18.8
Q ss_pred CCCCcccCCeEEEEECCEEEEEEecc
Q 028798 147 LPDNVDLDSVQAKLENGVLTLSLKKL 172 (203)
Q Consensus 147 LP~~vd~~~i~A~~~dGvL~I~lPK~ 172 (203)
|-+++..+.-.+.|.||||+|.++-.
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~~ 90 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGSV 90 (156)
T ss_pred HHhhcCccccccccccceEEEEecCc
Confidence 33445555567789999999999843
No 84
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=29.93 E-value=1.9e+02 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=16.1
Q ss_pred CcceEEEEEcCeEEEEEeEE
Q 028798 101 RDELKIEVEENRVLRVSGER 120 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~ 120 (203)
|++|+|+++++ .|+|+|.+
T Consensus 12 P~~V~V~i~~~-~ItVkGpk 30 (189)
T PTZ00179 12 PEDVTVSVKDR-IVTVKGKR 30 (189)
T ss_pred CCCCEEEEeCC-EEEEECCC
Confidence 68999999986 79999854
No 85
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=29.51 E-value=1.9e+02 Score=19.89 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEE--EEEECCCCcccCCeEEEEECC
Q 028798 87 PEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFW--RQFKLPDNVDLDSVQAKLENG 163 (203)
Q Consensus 87 ~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~--r~~~LP~~vd~~~i~A~~~dG 163 (203)
++...|.-.+-||-+.+|.|.-..++.....+........+++ |.|. ..+.+... +.+...+...+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d---------~ty~~~s~l~v~~~-~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGD---------GTYQLWVTLEVPPE-DKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCC---------CeEEEEEEEEECCC-CCCEEEEEEEeC
Confidence 4678999999999999999988876532233321111111111 2343 35556554 556677766643
No 86
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.45 E-value=54 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCeEEEEECCEEEEEEec
Q 028798 154 DSVQAKLENGVLTLSLKK 171 (203)
Q Consensus 154 ~~i~A~~~dGvL~I~lPK 171 (203)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 457788899999999983
No 87
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=29.25 E-value=2e+02 Score=20.06 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=13.3
Q ss_pred CeEEEEECCEEEEEEec
Q 028798 155 SVQAKLENGVLTLSLKK 171 (203)
Q Consensus 155 ~i~A~~~dGvL~I~lPK 171 (203)
.+.+.++||-.++++-.
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 47788889988888764
No 88
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=28.44 E-value=1.4e+02 Score=19.69 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=29.2
Q ss_pred CcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEEECCCCcccCCeEEEEECCEEEEEEe
Q 028798 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLK 170 (203)
Q Consensus 101 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~~LP~~vd~~~i~A~~~dGvL~I~lP 170 (203)
|+.++|.+.++ .+.+.|.+. ..++.||..+. ++...+++.+++...
T Consensus 2 P~gV~v~~~~~-~i~v~G~~g--------------------~l~~~~~~~v~---v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGN-IITVKGPKG--------------------ELSRPIPPGVK---VEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETT-EEEEESSSS--------------------EEEEEETTTEE---EEEEEETTSEEEEEE
T ss_pred CCcEEEEEeCc-EEEEECCCE--------------------eEEEECCCCee---EEEEcCCCceEEEEC
Confidence 57889999986 788998532 23446665532 222255777776655
No 89
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=28.42 E-value=54 Score=24.13 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.7
Q ss_pred eEEEEECCEEEEEEecc
Q 028798 156 VQAKLENGVLTLSLKKL 172 (203)
Q Consensus 156 i~A~~~dGvL~I~lPK~ 172 (203)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 77888999999999854
No 90
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.38 E-value=74 Score=23.39 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.4
Q ss_pred CeEEEEECCEEEEEEecc
Q 028798 155 SVQAKLENGVLTLSLKKL 172 (203)
Q Consensus 155 ~i~A~~~dGvL~I~lPK~ 172 (203)
.+.+.+.+|||+|+++..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 588999999999999643
No 91
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=26.72 E-value=1.4e+02 Score=25.07 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=26.4
Q ss_pred EEEEcCeEEEEEeEEeeeee-ccCCeEE------EEeeeeeEEEEEEECCCC
Q 028798 106 IEVEENRVLRVSGERKREEE-KKGDQWH------RVERSHGKFWRQFKLPDN 150 (203)
Q Consensus 106 V~v~~~~~L~I~g~~~~~~~-~~~~~~~------~~er~~g~F~r~~~LP~~ 150 (203)
|.+++| .|+|++.+..... .....+. .....||.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 456676 6999987654211 0111121 233467899999999963
No 92
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.46 E-value=56 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=14.5
Q ss_pred CeEEEEECCEEEEEEec
Q 028798 155 SVQAKLENGVLTLSLKK 171 (203)
Q Consensus 155 ~i~A~~~dGvL~I~lPK 171 (203)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788889999999984
No 93
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=26.23 E-value=1.4e+02 Score=23.24 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCCeEEEEEEeCCC---CCcceEEEEEcCeEEEEEeEEe
Q 028798 86 TPEGHFIMLDVPGV---KRDELKIEVEENRVLRVSGERK 121 (203)
Q Consensus 86 ~~d~y~i~~~LPG~---~~edI~V~v~~~~~L~I~g~~~ 121 (203)
-.+.|++.+..|.+ ....|.|.+.-|+ .+.|.++
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g--~~~~~~~ 83 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDG--VSLGTRQ 83 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECC--EEEEEEe
Confidence 35789999999999 8999999999776 3555554
No 94
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=25.20 E-value=3e+02 Score=22.64 Aligned_cols=78 Identities=13% Similarity=0.286 Sum_probs=50.6
Q ss_pred eeEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCCeEEEEeeeeeEEEEEE-ECCCCcccCCeEEE
Q 028798 81 VDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQF-KLPDNVDLDSVQAK 159 (203)
Q Consensus 81 ~di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~F~r~~-~LP~~vd~~~i~A~ 159 (203)
+-|-..++-..+.+.|-|+..++|.|++... .|-+.-.-- +|.. |.-.+ .|-..++++.-.-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~dl-----qGK~----------y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHDL-----QGKN----------YRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeeec-----CCcc----------eeeehhhhccccChhhcccc
Confidence 3444566677899999999999999999987 466654221 2332 22222 34456777766666
Q ss_pred EECCEEEEEEeccCC
Q 028798 160 LENGVLTLSLKKLSP 174 (203)
Q Consensus 160 ~~dGvL~I~lPK~~~ 174 (203)
..-....|.+.|.+.
T Consensus 141 vKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 141 VKTDTVLILCKKVEN 155 (224)
T ss_pred cccceEEEeehhhhc
Confidence 776666777755543
No 95
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=24.71 E-value=2.7e+02 Score=21.73 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=18.9
Q ss_pred ECCCCcccCCeEEEEECCEEEEEEecc
Q 028798 146 KLPDNVDLDSVQAKLENGVLTLSLKKL 172 (203)
Q Consensus 146 ~LP~~vd~~~i~A~~~dGvL~I~lPK~ 172 (203)
.=|+.|-+..-.....+|-+++++|+.
T Consensus 150 ~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 347777777655666699999999863
No 96
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.45 E-value=3.9e+02 Score=21.70 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=29.7
Q ss_pred eCCCCCcceEEEEEcCeEEEEEeEEeeeeeccCC-----eEE---EEeeeeeEEEEEEECCCC
Q 028798 96 VPGVKRDELKIEVEENRVLRVSGERKREEEKKGD-----QWH---RVERSHGKFWRQFKLPDN 150 (203)
Q Consensus 96 LPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~-----~~~---~~er~~g~F~r~~~LP~~ 150 (203)
+..+.++++.| ++| .|+|++.+......... .+. .....+|.|+-++++|..
T Consensus 32 ~~~~~~~nv~v--~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 32 YYTYRPENAYV--EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EEeCCCCCeEE--ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 33456676654 466 69999876532111111 111 123456889999999964
No 97
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=23.42 E-value=5e+02 Score=22.82 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=9.2
Q ss_pred EEEcCeEEEEEeEEe
Q 028798 107 EVEENRVLRVSGERK 121 (203)
Q Consensus 107 ~v~~~~~L~I~g~~~ 121 (203)
.+++| .|.|++.+.
T Consensus 42 ~v~dG-~L~I~p~~~ 55 (321)
T cd02179 42 FVKDG-NLVIEPTLL 55 (321)
T ss_pred EEeCC-eEEEEEeec
Confidence 45565 588887654
No 98
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=22.54 E-value=1.6e+02 Score=24.71 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=8.2
Q ss_pred EEEEEEECCC
Q 028798 140 KFWRQFKLPD 149 (203)
Q Consensus 140 ~F~r~~~LP~ 149 (203)
.|+-+++||.
T Consensus 89 ~~EaRik~p~ 98 (259)
T cd02182 89 RVEASIRLGD 98 (259)
T ss_pred EEEEEEECCC
Confidence 6888888886
No 99
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=22.37 E-value=3.8e+02 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.6
Q ss_pred CCcceEEEEEcCeEEEEEeEE
Q 028798 100 KRDELKIEVEENRVLRVSGER 120 (203)
Q Consensus 100 ~~edI~V~v~~~~~L~I~g~~ 120 (203)
-|++++|+++++ .++|+|-+
T Consensus 11 ~P~gV~V~i~~~-~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEGQ-VVTVKGPK 30 (178)
T ss_pred cCCCeEEEEecc-EEEEECCC
Confidence 489999999976 79999854
No 100
>PRK10568 periplasmic protein; Provisional
Probab=22.28 E-value=1.6e+02 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.7
Q ss_pred CCCCCcceEEEEEcCeEEEEEeEEe
Q 028798 97 PGVKRDELKIEVEENRVLRVSGERK 121 (203)
Q Consensus 97 PG~~~edI~V~v~~~~~L~I~g~~~ 121 (203)
++++..+|+|.+.+| .+.++|.-.
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeC
Confidence 566677899999987 689999875
No 101
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=21.78 E-value=1.8e+02 Score=20.59 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEECCCeEEEEEEe-CCCCCcceEEEEEc--CeEEEEEeE
Q 028798 83 WKETPEGHFIMLDV-PGVKRDELKIEVEE--NRVLRVSGE 119 (203)
Q Consensus 83 i~e~~d~y~i~~~L-PG~~~edI~V~v~~--~~~L~I~g~ 119 (203)
+.++++++.|.+.+ ||.+++.|. .+.+ + .|.|+-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~-g~~~~~~-~Lki~v~ 38 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIV-GYNEWRK-RVEVKIK 38 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceec-cccCCCC-eEEEEEe
Confidence 35678889998888 899888884 3455 4 4766643
No 102
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=21.60 E-value=64 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.1
Q ss_pred EEEEECCEEEEEEecc
Q 028798 157 QAKLENGVLTLSLKKL 172 (203)
Q Consensus 157 ~A~~~dGvL~I~lPK~ 172 (203)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6778899999999643
No 103
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.55 E-value=2.7e+02 Score=21.99 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCcceEEEEEc-CeEEEEEeEEeee-e-eccCCeEE-EEeeeeeEEEEEEECCCC
Q 028798 100 KRDELKIEVEE-NRVLRVSGERKRE-E-EKKGDQWH-RVERSHGKFWRQFKLPDN 150 (203)
Q Consensus 100 ~~edI~V~v~~-~~~L~I~g~~~~~-~-~~~~~~~~-~~er~~g~F~r~~~LP~~ 150 (203)
.++.+. +++ + .|.|++.+... . -..+.-.. .....+|.|+-++++|..
T Consensus 28 ~~~nv~--~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNVY--VENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCEE--EeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 455543 444 4 58888765421 0 00111112 344556899999999975
No 104
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=21.47 E-value=1e+02 Score=21.05 Aligned_cols=35 Identities=11% Similarity=0.300 Sum_probs=24.1
Q ss_pred eEEECCCeEEEEEEeCCCCCcceEEEEEcCeEEEE
Q 028798 82 DWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRV 116 (203)
Q Consensus 82 di~e~~d~y~i~~~LPG~~~edI~V~v~~~~~L~I 116 (203)
.|.+..+.|.|++.+=|+....|.+.-.+|..+.|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 45556778999999999999999999987643333
No 105
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=20.08 E-value=82 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=18.9
Q ss_pred CCCCCcceEEEEEcCeEEEEEeEEe
Q 028798 97 PGVKRDELKIEVEENRVLRVSGERK 121 (203)
Q Consensus 97 PG~~~edI~V~v~~~~~L~I~g~~~ 121 (203)
=-|+.+.|.|....+ .|.|+|+.=
T Consensus 21 ~~f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 21 LSFDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EEEETTEEEEEETTE-EEEEEEEEE
T ss_pred EEECCCEEEEEeCCE-EEEEECceE
Confidence 345788899999976 799999753
No 106
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=20.01 E-value=1e+02 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.8
Q ss_pred CCEEEEEEeccCCCCCCCCeEEEecc
Q 028798 162 NGVLTLSLKKLSPDQIKGPRVVGIAG 187 (203)
Q Consensus 162 dGvL~I~lPK~~~~~~~~~r~I~I~~ 187 (203)
+|.|.+.+||+.-++ ..|+++.
T Consensus 10 ~g~l~~YvpKKDLEE----~Vv~~e~ 31 (67)
T TIGR02934 10 AGELSAYVPKKDLEE----VIVSVEK 31 (67)
T ss_pred CCCEEEEEECCcchh----heeeeec
Confidence 678999999998765 5566663
Done!