RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028798
(203 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 160 bits (406), Expect = 1e-50
Identities = 67/147 (45%), Positives = 96/147 (65%), Gaps = 3/147 (2%)
Query: 43 RSLLSDLWTERLADPFRVLEQI--PFELERDETMALSPARVDWKETPEGHFIMLDVPGVK 100
RS + D + + ADPF I ET A + AR+DWKETPE H D+PGVK
Sbjct: 6 RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 101 RDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKL 160
++E+K+EVE+ VL VSGER +E+E K D+WHRVERS GKF R+F+L ++ ++ V+A L
Sbjct: 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125
Query: 161 ENGVLTLSLKKLSPDQIKGPRVVGIAG 187
ENGVLT+++ K + + + + I+G
Sbjct: 126 ENGVLTVTVPKAEVKKPE-VKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 141 bits (358), Expect = 5e-44
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 80 RVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHG 139
RVD KE + D+PG+ ++++++++ +L + GERK E + +++ R+ER +G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 140 KFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 171
F R+F LPD+ D D + A NGVL + + K
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 127 bits (321), Expect = 3e-38
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 54 LADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRV 113
+ + L++ EL R + P VD E ++ D+ G ++++K V
Sbjct: 1 MYYLGKELQKRSEELSRGFYELVYP-PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNE 59
Query: 114 LRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVDLDS-VQAKLENGVLTLSLKKL 172
L + ER+ E + + + +LP NV D+ + K ENGVLT+ +
Sbjct: 60 LIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIA 115
Query: 173 SPDQIK 178
K
Sbjct: 116 GTSVFK 121
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 127 bits (321), Expect = 8e-38
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 37 PFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPA---------RVDWKETP 87
PF + + + + + P E+ A++ + E
Sbjct: 6 PFDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGD 65
Query: 88 EGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVE-RSHGKFWRQFK 146
+ ++ +PGV ++++ + + L + +R + ++ E + +R K
Sbjct: 66 QHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIK 124
Query: 147 LPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 185
LP V ++ AK ENGVL++ L K + + I
Sbjct: 125 LPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 160
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 74.7 bits (184), Expect = 3e-18
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 84 KETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWR 143
T + + LDV DEL ++ ++ V ++G+ +++ G F R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQDEHGYISR-------CFTR 54
Query: 144 QFKLPDNVDLDSVQAKL-ENGVLTLSLKK 171
++ LP VD V + L G LT+
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 75.3 bits (185), Expect = 4e-18
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 84 KETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWR 143
+ + I LDV ++L ++V+E+ V + G+ ++ G +F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHG-------YISREFHR 59
Query: 144 QFKLPDNVDLDSVQAKL-ENGVLTLSLKKLSP--DQIKGPRVVGIA 186
+++LP NVD ++ L +G+LT S K+ D R + ++
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 74.8 bits (184), Expect = 5e-18
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 84 KETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWR 143
P ++LDV +E+ ++V + + V E++ D+ + R +F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARH----EERPDEHGFIAR---EFHR 58
Query: 144 QFKLPDNVDLDSVQAKL-ENGVLTLSLKKLSPDQ 176
+++LP VD +V + L GVL++ S
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQA 92
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 73.8 bits (181), Expect = 6e-17
Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 40 DRPRSLLSDLWTERL--ADPFRVLEQI-PFEL----ERDETMALSPARVDWKETPEGHFI 92
P L + E L +D F + PF L + + + +
Sbjct: 18 HSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSV 77
Query: 93 MLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPDNVD 152
LDV +ELK++V + + V G+ + +++ G +F R++++P +VD
Sbjct: 78 NLDVKHFSPEELKVKVLGDV-IEVHGKHEERQDEHG-------FISREFHRKYRIPADVD 129
Query: 153 LDSVQAKL-ENGVLTLSLKKLSPDQIKGPRVVGIAGGEDEPAKLQSEAR 200
++ + L +GVLT++ + R + I E++PA + +
Sbjct: 130 PLTITSSLSSDGVLTVNGPRKQVS--GPERTIPIT-REEKPAVTAAPKK 175
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 74.9 bits (183), Expect = 2e-16
Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 6/141 (4%)
Query: 29 SSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPE 88
+++ +L A + ++ + + +
Sbjct: 176 TTDD-VLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKK 234
Query: 89 GHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLP 148
H + P ++K+ + N+V V G +EE+ + + H +F++ F P
Sbjct: 235 IHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTE----NASHSEHREFYKAFVTP 289
Query: 149 DNVDLDSVQAKLENGVLTLSL 169
+ VD QA++ +G++ +
Sbjct: 290 EVVDASKTQAEIVDGLMVVEA 310
Score = 57.9 bits (139), Expect = 2e-10
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 22/142 (15%)
Query: 38 FADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDW-------KETPEGH 90
F+ P + + + + + I E P +D+ + H
Sbjct: 58 FSLEPFTAMDN----AFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLH 113
Query: 91 F-IMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWRQFKLPD 149
F + +V K +E+ I+ ++N+ L V ++ R LP
Sbjct: 114 FKVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSES--------VGRSIPLPP 164
Query: 150 NVDLDSVQAKL-ENGVLTLSLK 170
+VD + +QA + + VL +
Sbjct: 165 SVDRNHIQATITTDDVLVIEAP 186
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 68.2 bits (167), Expect = 1e-15
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 84 KETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVERSHGKFWR 143
+ + LDV +ELK++V + V+ V G+ + +++ G +F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISR-------EFHR 53
Query: 144 QFKLPDNVDLDSVQAKL-ENGVLTLSLKKLSP 174
++++P +VD ++ + + +GVLT++ +
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQV 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-09
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 36/153 (23%)
Query: 40 DRPRSL--LSDLWTERLADPF----RVL-----EQIPFELERDETMALSPARVDWKETP- 87
L L ++ + + F ++L +Q+ L T +S TP
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 88 EGHFIMLDVPGVKRDELKIEVEENRVLRVS--GERKREEEKKGDQWHRVERSHGKFWRQF 145
E ++L + +L EV R+S E R+ W W+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL---ATW--------DNWKH- 349
Query: 146 KLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIK 178
V+ D + +E SL L P + +
Sbjct: 350 -----VNCDKLTTIIE-----SSLNVLEPAEYR 372
Score = 37.5 bits (86), Expect = 0.002
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 35/139 (25%)
Query: 42 PRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKE-TPEGHFIMLDVPGVK 100
P LLS +W + + + +L + S KE T I L+
Sbjct: 388 PTILLSLIWFD---VIKSDVMVVVNKLHK-----YSLVEKQPKESTISIPSIYLE----- 434
Query: 101 RDELKIEVEENRVL------RVSGERKREEEKKGDQW-----------HRVERSHGKFWR 143
LK+++E L + + + + + H H +
Sbjct: 435 ---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 144 QFKLPDNVDLDSVQAKLEN 162
F++ +D ++ K+ +
Sbjct: 492 LFRMV-FLDFRFLEQKIRH 509
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-07
Identities = 45/254 (17%), Positives = 75/254 (29%), Gaps = 88/254 (34%)
Query: 15 LPMLLLAILACLVGSSNGSLLTP--FADRPRSLL--------------SDLWTE--RLAD 56
P++ + LA V ++ TP + +D W
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 57 P-----F----RVLEQIPFELERDETMALSPARV-DWKETPEG---HFIMLDVPGVKRDE 103
F R E P +L P+ + D E EG ML + + +++
Sbjct: 298 KAITVLFFIGVRCYEAYP-------NTSLPPSILEDSLENNEGVPSP--MLSISNLTQEQ 348
Query: 104 LKIEVEE-NRVLR-----------------VSGE-----------RKREEEKKGDQWHRV 134
++ V + N L VSG RK + DQ R+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRI 407
Query: 135 ERSHGK--FWRQFKLPDNVD-------LDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 185
S K F +F LP V L + ++ ++ + I+ P V
Sbjct: 408 PFSERKLKFSNRF-LP--VASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIP-VYDT 462
Query: 186 AGGEDEPAKLQSEA 199
G D L+ +
Sbjct: 463 FDGSD----LRVLS 472
Score = 33.5 bits (76), Expect = 0.043
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 47/122 (38%)
Query: 6 QTR-PFN-------VNLLPMLLLAILACLVGS---SNGSLLTPFADRPRSLLSDLWTERL 54
Q+R PF+ LP V S S LL P +D + DL +
Sbjct: 404 QSRIPFSERKLKFSNRFLP----------VASPFHS--HLLVPASDL---INKDLVKNNV 448
Query: 55 ADPFRVLE-QIP-FELE-----RDETMALSPA--------RVDWKETPEG---HFIMLDV 96
+ F + QIP ++ R + ++S V W+ T + H +
Sbjct: 449 S--FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG- 505
Query: 97 PG 98
PG
Sbjct: 506 PG 507
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.037
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 9/26 (34%)
Query: 157 QA--KLENGVLTLSLKKLSPDQIKGP 180
QA KL+ SLK + D P
Sbjct: 20 QALKKLQA-----SLKLYADDS--AP 38
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 29.8 bits (67), Expect = 0.20
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 77 SPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGERKREEEKKGDQWHRVER 136
+ R ++ + PE + + G+ + + I+ E L V E E+
Sbjct: 1 AKYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQI-LSVVIEVPGEDA----------- 48
Query: 137 SHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQ 176
++ Q +L + D + ++ + + + L K
Sbjct: 49 ----YYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIIT 84
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 30.6 bits (70), Expect = 0.28
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 177 IKGPRVVGIAGGED 190
+KG +VVG AG ++
Sbjct: 168 LKGCKVVGAAGSDE 181
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 30.6 bits (70), Expect = 0.31
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 177 IKGPRVVGIAGGED 190
+ G VVG AG ++
Sbjct: 178 MMGCYVVGSAGSKE 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 0.36
Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 104 LKIEVE---ENRVLRVSGERKREEEKKGDQWHRVERSHGKF 141
+ ++ E R R + + K+ +K +++ + E + +
Sbjct: 146 FVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLET 186
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein
translocase, cell membrane, cell outer fimbrium,
transmembrane, transport; 3.15A {Escherichia coli} PDB:
2vqi_A*
Length = 493
Score = 29.5 bits (66), Expect = 0.74
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 74 MALSPARVDWK---------ETPEGHFIMLDVPGVKRDELKIEVEE 110
+A + ARV P G F + D+ R L +EV E
Sbjct: 124 IAETNARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIE 169
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 28.7 bits (65), Expect = 1.4
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 177 IKG-PRVVGIAGGED 190
G RVVGI G +
Sbjct: 183 FLGCSRVVGICGTHE 197
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 27.8 bits (60), Expect = 2.9
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 129 DQWHRVERSHGKFWRQFKLPDNVDLD--SVQAKLENGVLTLSLKKLSPDQIKGPR 181
D ++ + FK+P N +++AK + T + P
Sbjct: 172 DMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPH 226
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (59), Expect = 4.2
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 19/100 (19%)
Query: 69 ERDETMALSPARVDWKETPEGH----------FIMLDVPGVKRD-ELKIEVEEN------ 111
E T DW++ ++ + +LKI V
Sbjct: 104 EAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163
Query: 112 -RVLRVSGERKREEEKKGDQWHRVERSHGKFWR-QFKLPD 149
++ R R E D R ++ QF D
Sbjct: 164 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTD 203
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 26.5 bits (59), Expect = 6.6
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 177 IKGPRVVGIAGGED 190
V+G ++
Sbjct: 186 KAKCHVIGTCSSDE 199
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 9.0
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 70 RDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEEN-------RVLRVSGERKR 122
++ET+ + PA V EG ++K+ V+ + RVLR ER R
Sbjct: 122 KEETVTVYPADV---VLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178
Query: 123 EEEKKGDQWHR-VERSHGKF 141
+ E+ Q+ V+ + +F
Sbjct: 179 DLEQILSQYITFVKPAFEEF 198
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 25.9 bits (57), Expect = 9.4
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 172 LSPDQIKG-PRVVGIAGGED 190
+ +++ +GIA GE+
Sbjct: 267 IEMAKLRQARYSIGIAMGEE 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.396
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,098,978
Number of extensions: 185019
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 36
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)