BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028799
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFR----HMINILNI 190
L+L +PS QVQ + ++PP L+PGI E +LISGGFR H+ + LNI
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PATNVF 131
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFR----HMINILNI 190
L+L +PS QVQ + ++PP L+PGI E +LISGGFR H+ + LNI
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PATNVF 131
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
+ D+DST E IDE+A+ G G+ VAE T RAM G + FE++L R+S K + Q+
Sbjct: 110 IVLDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKDAPEQI 169
Query: 146 QDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINILN 189
+ + P L P + E + SGGF + + L
Sbjct: 170 LSQVRETLP-LMPELPELVATLHAFGWKVAIASGGFTYFSDYLK 212
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ FD DST+ +E IDE+A G + V + T AM G + FE++L R+SL K + +
Sbjct: 8 ILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMIN 186
V+ +++ P + G +E ++SGGF +N
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVN 107
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ FD DST+ +E IDE+A G + V + T A G + FE++L R+SL K + +
Sbjct: 8 ILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMIN 186
V+ +++ P + G +E ++SGGF +N
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVN 107
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ F DST+ +E IDE+A G + V + T AM G + FE++L R+SL K + +
Sbjct: 8 ILFXFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMIN 186
V+ +++ P + G +E ++SGGF +N
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVN 107
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ F+ DST+ +E IDE+A G + V + T A G + FE++L R+SL K + +
Sbjct: 8 ILFNFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMIN 186
V+ +++ P + G +E ++SGGF +N
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVN 107
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
+ FD+DST +EG+DE+A G + T +AM G + F + R+ + K + V
Sbjct: 111 IAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAV 170
Query: 146 QDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGF 181
+ + R LSPG+ +ISGG
Sbjct: 171 LNAVCDR-MTLSPGLLTILPVIKAKGFKTAIISGGL 205
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 55 SVQPLEASALGRSENTLPSKEVLQLW--------RTADAVCFDVDSTVCVDEGIDELAEF 106
SV P AL + N + S+E + + R + FDVDST+ E I+ LA
Sbjct: 149 SVPPGADEALRTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAK 208
Query: 107 CGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXX 166
GA VA T AM G + F ++L R++ + V D + + L PG
Sbjct: 209 AGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQ-LELMPGARTTLRT 267
Query: 167 XXXXXXXXYLISGGFRHMINIL 188
++SGGFR +I L
Sbjct: 268 LRRLGYACGVVSGGFRRIIEPL 289
>pdb|2Q1F|A Chain A, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
pdb|2Q1F|B Chain B, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
Length = 1022
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 5 VRSQISPIGAHYKQ-QHSV---FIPKFSLKLRTNL---CRARVGMMKHSKSFNSVAASVQ 57
V+SQ+ GAHYK +HS+ F P L+LR +L + G + +F + Q
Sbjct: 37 VQSQLGISGAHYKDGKHSLEWTFEPNGRLELRKDLKFEKKDPTGKDLYLSAFIVWIYNEQ 96
Query: 58 PLEAS------ALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDEL 103
P +A+ GR + P + WR A VC++ D +EG +EL
Sbjct: 97 PQDAAIEFEFLKDGRKCASFPFGINFKGWRAA-WVCYERDXQGTPEEGXNEL 147
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 88 FDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQVQ 146
FD DST+ E I+ LA G V T +A G F ++L R+S K L +
Sbjct: 9 FDFDSTLVNAETIESLARAWGVFDEVKTITLKAXNGETDFHKSLILRVSKLKNXPLKLAK 68
Query: 147 DFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGF 181
+ E P L G E SGGF
Sbjct: 69 EVCESLP--LFEGALELVSALKEKNYKVVCFSGGF 101
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 34 NLCRARVGMMKHSKSFNSVAASVQPLEAS----ALGRSENTLPSKEVLQLWRTADAVCFD 89
N+ A +M+ ++S + VAA+ LE + + + P+KE L WRT A
Sbjct: 300 NVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQAYAV- 358
Query: 90 VDSTVCVDEGIDELAEFCGA 109
+C+ E +D L GA
Sbjct: 359 ---KMCI-EAVDRLMAAAGA 374
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 97 DEGIDELAE----FCGAGKAVAEWTARAMGGSVPFEEALAARLSLF 138
DEG+D + E + G V ++ G P EEAL R+S+F
Sbjct: 175 DEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 220
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 97 DEGIDELAE----FCGAGKAVAEWTARAMGGSVPFEEALAARLSLF 138
DEG+D + E + G V ++ G P EEAL R+S+F
Sbjct: 120 DEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,205,807
Number of Sequences: 62578
Number of extensions: 176872
Number of successful extensions: 343
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 17
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)