BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028799
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82796|SERB_ARATH Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana
GN=PSP PE=1 SV=2
Length = 295
Score = 261 bits (666), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 147/186 (79%)
Query: 1 MEGLVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRARVGMMKHSKSFNSVAASVQPLE 60
ME L S++ P+ ++ S+F L+LR CR V +M H K V ASVQP E
Sbjct: 1 MEALTTSRVVPVQVPCRKLSSLFANFSCLELRRYPCRGLVSIMNHPKLLRPVTASVQPHE 60
Query: 61 ASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARA 120
S LG N +PSKE+L LWR+ +AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARA
Sbjct: 61 LSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARA 120
Query: 121 MGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGG 180
MGGSVPFEEALAARLSLFKPSLS+V+++L+KRPPRLSPGI+ELVKKL+ANN +VYLISGG
Sbjct: 121 MGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGG 180
Query: 181 FRHMIN 186
FR MIN
Sbjct: 181 FRQMIN 186
>sp|Q99LS3|SERB_MOUSE Phosphoserine phosphatase OS=Mus musculus GN=Psph PE=1 SV=1
Length = 225
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+FCG AV+E T RAMGG++PF++AL R
Sbjct: 6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQR 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR----HMINILNI 190
L+L +PS QVQ L + PP L+PGI ELV +L+ N V+LISGGFR H+ LNI
Sbjct: 66 LALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PTTNVF 131
>sp|Q5M819|SERB_RAT Phosphoserine phosphatase OS=Rattus norvegicus GN=Psph PE=2 SV=1
Length = 225
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+FCG AV+E T RAMGG++PF++AL R
Sbjct: 6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR----HMINILNI 190
L+L +PS QVQ L + PP L+PGI ELV +L+ N V+LISGGFR H+ LNI
Sbjct: 66 LALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PTTNVF 131
>sp|Q5RB83|SERB_PONAB Phosphoserine phosphatase OS=Pongo abelii GN=PSPH PE=2 SV=1
Length = 225
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 90/126 (71%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR----HMINILNI 190
L+L +PS QVQ + ++PP L+PGI ELV +L+ N V+LISGGFR H+ + LNI
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PATNVF 131
>sp|P78330|SERB_HUMAN Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2
Length = 225
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 90/126 (71%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ +L+ +ADAVCFDVDSTV +EGIDELA+ CG AV+E T RAMGG+VPF+ AL R
Sbjct: 6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTER 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR----HMINILNI 190
L+L +PS QVQ + ++PP L+PGI ELV +L+ N V+LISGGFR H+ + LNI
Sbjct: 66 LALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PATNVF 131
>sp|Q2KHU0|SERB_BOVIN Phosphoserine phosphatase OS=Bos taurus GN=PSPH PE=2 SV=1
Length = 225
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 89/126 (70%), Gaps = 4/126 (3%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAAR 134
E+ L+ +ADAVCFDVDSTV +EGIDELA+FCG AV+E T +AMGG+VPF+ AL R
Sbjct: 6 ELRNLFCSADAVCFDVDSTVIQEEGIDELAKFCGVEDAVSEMTRQAMGGAVPFKAALTQR 65
Query: 135 LSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR----HMINILNI 190
L+L +PS QVQ L + PP L+PGI ELV +L+ N V+LISGGFR H+ + LNI
Sbjct: 66 LALIQPSREQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNI 125
Query: 191 LKWDVL 196
+V
Sbjct: 126 PSTNVF 131
>sp|Q9VSY6|SERB_DROME Phosphoserine phosphatase OS=Drosophila melanogaster GN=aay PE=2
SV=1
Length = 270
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 71/100 (71%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
VCFDVDSTV +EGIDELAE+CG G VA T AMGG++ F++AL RL++ +P+ QV
Sbjct: 64 VCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMGGAMTFQDALKIRLNIIRPTQQQV 123
Query: 146 QDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMI 185
+DF+++RP LS + V LKA K VYLISGGF +I
Sbjct: 124 RDFIQERPSTLSKNVKRFVSHLKAEGKQVYLISGGFDCLI 163
>sp|O28142|SERB_ARCFU Phosphoserine phosphatase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2138 PE=3 SV=1
Length = 344
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQV 145
+ FD+DST+ E IDELA+ G G V++ T RAM G + F+EAL R+ L K +V
Sbjct: 132 IVFDMDSTLVEAEIIDELAKEAGVGDEVSKLTERAMRGEIGFKEALEERVRLLKGLPVEV 191
Query: 146 QDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINIL 188
+ + R +L+ G ELV+ LK V ++SGGF + + L
Sbjct: 192 LERIYSR-IKLTEGAKELVRSLKEAGYKVAVVSGGFSYFTDRL 233
>sp|P0AGB2|SERB_SHIFL Phosphoserine phosphatase OS=Shigella flexneri GN=serB PE=3 SV=1
Length = 322
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81 RTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
RT + D+DST E IDE+A+ G G+ VAE T RAM G + F +L +R++ K
Sbjct: 108 RTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKG 167
Query: 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGF 181
+ + + + + P L PG+ +LV KL+ V + SGGF
Sbjct: 168 ADANILQQVRENLP-LMPGLTQLVLKLETLGWKVAIASGGF 207
>sp|P0AGB0|SERB_ECOLI Phosphoserine phosphatase OS=Escherichia coli (strain K12) GN=serB
PE=1 SV=1
Length = 322
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81 RTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
RT + D+DST E IDE+A+ G G+ VAE T RAM G + F +L +R++ K
Sbjct: 108 RTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKG 167
Query: 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGF 181
+ + + + + P L PG+ +LV KL+ V + SGGF
Sbjct: 168 ADANILQQVRENLP-LMPGLTQLVLKLETLGWKVAIASGGF 207
>sp|P0AGB1|SERB_ECO57 Phosphoserine phosphatase OS=Escherichia coli O157:H7 GN=serB PE=3
SV=1
Length = 322
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81 RTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
RT + D+DST E IDE+A+ G G+ VAE T RAM G + F +L +R++ K
Sbjct: 108 RTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKG 167
Query: 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGF 181
+ + + + + P L PG+ +LV KL+ V + SGGF
Sbjct: 168 ADANILQQVRENLP-LMPGLTQLVLKLETLGWKVAIASGGF 207
>sp|Q58989|SERB_METJA Phosphoserine phosphatase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1594 PE=1 SV=1
Length = 211
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ 144
+ FD DST+ +E IDE+A G + V + T AM G + FE++L R+SL K + +
Sbjct: 8 ILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEK 67
Query: 145 VQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMIN 186
V+ +++ P + G +E +K+LK V ++SGGF +N
Sbjct: 68 VEKAIKRITP--TEGAEETIKELKNRGYVVAVVSGGFDIAVN 107
>sp|O74382|SERB_SCHPO Probable phosphoserine phosphatase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC3H7.07c PE=2 SV=1
Length = 298
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 67 SENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVP 126
SE T +K+ L V FD+DST+ E IDELA G K VA T+ AM G +
Sbjct: 68 SEATFSTKKKL--------VVFDMDSTLIQQECIDELAAEAGIQKEVATITSLAMNGEID 119
Query: 127 FEEALAARLSLFKP-SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHM 184
F+E+L R+SL + S+ + + K +PG +L LK + + SGGF M
Sbjct: 120 FQESLRRRVSLLQGLSVDVINKVIGK--ITFTPGAKQLCHCLKQMGATLVVASGGFVPM 176
>sp|P44997|SERB_HAEIN Phosphoserine phosphatase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=serB PE=3 SV=1
Length = 314
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 83 ADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSL 142
A + D+DST E IDE+A+ G G+ V+ T AM G + FE++L R+ K +
Sbjct: 103 AGLLVMDMDSTAIQIECIDEIAKLAGVGELVSAITESAMRGELDFEQSLRCRVGTLKGAP 162
Query: 143 SQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILNIL 191
+ + + P +S G+ E ++ L+ + SGGF + + L L
Sbjct: 163 ESILQQVRENLPLMS-GLVETIQTLQKYGWKTAIASGGFTYFADYLKAL 210
>sp|P42941|SERB_YEAST Phosphoserine phosphatase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SER2 PE=1 SV=1
Length = 309
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 88 FDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQD 147
FD+DST+ E I+ +A + G + V E T RAM + F+E+L R+ L + QV
Sbjct: 96 FDMDSTLIYQEVIELIAAYAGVEEQVHEITERAMNNELDFKESLRERVKLLQG--LQVDT 153
Query: 148 FLE--KRPPRLSPGIDELVKKLKANNKNVYLISGGF 181
+ K+ ++ G+ EL K L N + ++SGGF
Sbjct: 154 LYDEIKQKLEVTKGVPELCKFLHKKNCKLAVLSGGF 189
>sp|A0QJI1|SERB_MYCA1 Phosphoserine phosphatase OS=Mycobacterium avium (strain 104)
GN=serB PE=1 SV=1
Length = 411
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 55 SVQPLEASALGRSENTLPSKEVLQLW--------RTADAVCFDVDSTVCVDEGIDELAEF 106
SV P AL + N + S+E + + R + FDVDST+ E I+ LA
Sbjct: 145 SVPPGADGALRTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAK 204
Query: 107 CGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKK 166
GA VA T AM G + F ++L R++ + V D + + L PG ++
Sbjct: 205 AGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQ-LELMPGARTTLRT 263
Query: 167 LKANNKNVYLISGGFRHMINIL 188
L+ ++SGGFR +I L
Sbjct: 264 LRRLGYACGVVSGGFRRIIEPL 285
>sp|O15172|PSPHL_HUMAN Putative phosphoserine phosphatase-like protein OS=Homo sapiens
GN=PSPHP1 PE=5 SV=1
Length = 72
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 75 EVLQLWRTADAVCFDVDSTVCVDEGI 100
E+ +L+ +ADAVCFDVDSTV +EGI
Sbjct: 30 ELRKLFYSADAVCFDVDSTVISEEGI 55
>sp|Q74LC1|GLYA_LACJO Serine hydroxymethyltransferase OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=glyA PE=3 SV=1
Length = 411
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 126 PFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKA------NNKNVYLISG 179
P E +AA+ Q F E P + ID+++K KA N+KN+ ++SG
Sbjct: 258 PLEHVIAAK----------AQAFYEDLQPEFTQYIDQVIKNSKAMAEEFKNSKNIRVVSG 307
Query: 180 GFRHMINILNILKWDV 195
G + + I++I K V
Sbjct: 308 GTDNHLMIIDITKTGV 323
>sp|Q8A2I1|CABC2_BACTN Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=chonabc PE=1 SV=1
Length = 1014
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 5 VRSQISPIGAHYKQ-QHSV---FIPKFSLKLRTNLCRAR---VGMMKHSKSFNSVAASVQ 57
V+SQ+ GAHYK +HS+ F P L+LR +L + G + +F + Q
Sbjct: 37 VQSQLGISGAHYKDGKHSLEWTFEPNGKLELRKDLKFEKKDPTGKDLYLSAFIVWIYNEQ 96
Query: 58 PLEAS------ALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDEL 103
P +A+ GR + P + WR A VC++ D +EG++EL
Sbjct: 97 PQDAAIEFEFLKDGRKCASFPFGINFKGWRAA-WVCYERDMQGTPEEGMNEL 147
>sp|C5G6D7|CABC2_BACT4 Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron
GN=chonabc PE=1 SV=2
Length = 1014
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 5 VRSQISPIGAHYKQ-QHSV---FIPKFSLKLRTNLCRAR---VGMMKHSKSFNSVAASVQ 57
V+SQ+ GAHYK +HS+ F P L+LR +L + G + +F + Q
Sbjct: 37 VQSQLGISGAHYKDGKHSLEWTFEPNGRLELRKDLKFEKKDPTGKDLYLSAFIVWIYNEQ 96
Query: 58 PLEAS------ALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDEL 103
P +A+ GR + P + WR A VC++ D +EG++EL
Sbjct: 97 PQDAAIEFEFLKDGRKCASFPFGINFKGWRAA-WVCYERDMQGTPEEGMNEL 147
>sp|Q183T0|PHNXW_CLOD6 Bifunctional phosphonoacetaldehyde hydrolase/aminoethylphosphonate
transaminase OS=Clostridium difficile (strain 630)
GN=phnXW PE=3 SV=1
Length = 636
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 100 IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPG 159
ID + E C + W+ + G VP E+ + + F+P L + LE+ + P
Sbjct: 57 IDHIREMCEMDRIKNIWSDKF--GKVPTEDDVNELYAEFEPMLFET---LEEYTTPI-PH 110
Query: 160 IDELVKKLKANNKNVYLISGGFRHMINIL 188
+ E ++KL+ N + +G R M+NI+
Sbjct: 111 VVETIEKLRKNGLKIGSTTGYTREMMNIV 139
>sp|A3LZU8|RMGL_PICST L-rhamnono-gamma-lactonase OS=Scheffersomyces stipitis (strain ATCC
58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=LRA2
PE=1 SV=2
Length = 336
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 88 FDVDSTVCV--DEGIDELAEFCGAGKAVAEW--TARAMGG--------SVPFEEALAARL 135
FDV+ V + D ID G + E+ R + G S PF+ L +
Sbjct: 48 FDVEGVVWIECDAKIDLTQGLKGLENPIEEYLYICRNINGKLLPEEGVSTPFKRRLIKAM 107
Query: 136 SLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMI 185
F P P S G++E VK LK N + + + GFR++I
Sbjct: 108 IPFAPM------------PLGSAGVEEYVKALKTRNSSEFHLVKGFRYLI 145
>sp|O06745|YITJ_BACSU Bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase OS=Bacillus subtilis (strain 168) GN=yitJ PE=2
SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 49 FNSVAASVQPLEASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCG 108
F+ V SV P ++LPS E +L D F ++ +G + CG
Sbjct: 217 FDDVFLSVYP---------NSSLPSLEEGRLVYETDDTYFQNSASEFRKQGARIIGGCCG 267
Query: 109 AGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLK 168
A A+GG P E K ++ ++F+ R PG+DE+ K +
Sbjct: 268 TTPNHIRAMAEAVGGLAPITE---------KEVKTRAKEFISVHHERTEPGLDEIAAKKR 318
Query: 169 A 169
+
Sbjct: 319 S 319
>sp|P17965|RDRP_PVMR RNA replication protein OS=Potato virus M (strain Russian) PE=3
SV=2
Length = 1968
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 78 QLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEE 129
+W + A FD D+ V V E +D L GAG VA T+R G+VP +
Sbjct: 436 NIWENSYAWFFDTDAEVDVPEKLDSLFMGEGAG-LVAHITSRPYVGTVPLAD 486
>sp|A0KGL5|RAPA_AERHH RNA polymerase-associated protein RapA OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rapA
PE=3 SV=1
Length = 955
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 38/186 (20%)
Query: 4 LVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRARVGMMKHSKSFNSVAASVQPLEASA 63
L+ S+I G ++ Q + + F L L +L R+G + N+V V LE +
Sbjct: 548 LLCSEIGSEGRNF--QFASHLVLFDLPLNPDLLEQRIGRLDRIGQQNTVEIHVPYLEGT- 604
Query: 64 LGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAV--------AE 115
S+ LQLW +G+D + C + V E
Sbjct: 605 ---------SQRALQLW---------------YHDGLDAFEQTCPTARPVFEAVRDELFE 640
Query: 116 WTARAMGGSVPFEEALAARLSLFKP---SLSQVQDFLEKRPPRLSPGIDELVKKLKANNK 172
A G P + L L +P L Q +D L + +LV KL A +
Sbjct: 641 LLAANTGDQAPLDALLVKTRELHEPLKARLEQGRDRLLEIHSSGGAAAQQLVDKLAAEDD 700
Query: 173 NVYLIS 178
+ +IS
Sbjct: 701 DTGMIS 706
>sp|O83023|PCKA_SELRU Phosphoenolpyruvate carboxykinase [ATP] OS=Selenomonas ruminantium
GN=pckA PE=3 SV=1
Length = 539
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 146 QDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR 182
Q FLE P + + +ELVKK++AN YL++ G+
Sbjct: 409 QAFLELHPTKYA---EELVKKMEANGTKAYLVNTGWN 442
>sp|B6EPV7|RAPA_ALISL RNA polymerase-associated protein RapA OS=Aliivibrio salmonicida
(strain LFI1238) GN=rapA PE=3 SV=1
Length = 969
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 36/184 (19%)
Query: 4 LVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRARVGMMKHSKSFNSVAASVQPLEASA 63
L+ S+I G +++ + + + F L +L R+G + + V L+ +
Sbjct: 562 LICSEIGSEGRNFQFANQLVM--FDLPFNPDLLEQRIGRLDRIGQKRDIDIHVPYLQGT- 618
Query: 64 LGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAM-- 121
S+E+L W DEG++ E C G+AV E + +
Sbjct: 619 ---------SQELLARW---------------FDEGLNAFGETCPTGRAVYEKFSDTIIA 654
Query: 122 -------GGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNV 174
G P E AA K L Q +D L + EL +K+ A + ++
Sbjct: 655 ILATGKSDGLEPLIEESAALNKELKAQLEQGRDRLLEVHSNGGNKAKELAEKIAATDGDI 714
Query: 175 YLIS 178
+L++
Sbjct: 715 HLVN 718
>sp|A1CP85|ARO1_ASPCL Pentafunctional AROM polypeptide OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=aroM
PE=3 SV=1
Length = 1587
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 4 LVRSQISPIGAHYKQQHSVFIPKFSLKLR------------TNLCRARVGMMKHSKSFNS 51
+V Q+ +GA K+QHS F+ LR ++ RV ++K S N
Sbjct: 1034 IVTGQVDSLGAIKKKQHSFFVSLTLPDLRPAGDILEQACVGSDAVELRVDLLKDPSSSNG 1093
Query: 52 VAASVQPLEASALGRSENTLP------------------SKEVLQLWRTA-DAVCFDVDS 92
+ + E + RS TLP +E +QL++ A + C VD
Sbjct: 1094 IPSVDYVAEQMSFLRSHTTLPLIFTIRTKSQGGFFPDEAHEEAMQLYQLAFRSGCEFVDL 1153
Query: 93 TVCV-DEGIDELAEFCGAGKAVA 114
+ DE + ++E G K +A
Sbjct: 1154 EIAFPDELLRTVSEMKGYSKIIA 1176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,730,238
Number of Sequences: 539616
Number of extensions: 2731264
Number of successful extensions: 6992
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6969
Number of HSP's gapped (non-prelim): 30
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)