Query 028799
Match_columns 203
No_of_seqs 200 out of 1571
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02954 phosphoserine phospha 99.9 1.2E-21 2.7E-26 162.4 15.8 123 72-194 1-124 (224)
2 KOG1615 Phosphoserine phosphat 99.9 1.3E-20 2.7E-25 153.9 13.5 122 74-195 7-129 (227)
3 TIGR00338 serB phosphoserine p 99.8 1.8E-17 3.8E-22 137.0 14.7 121 76-198 7-129 (219)
4 COG0560 SerB Phosphoserine pho 99.7 1.7E-16 3.7E-21 132.6 13.3 121 80-201 2-124 (212)
5 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 5.3E-16 1.2E-20 125.7 14.3 119 81-201 2-127 (201)
6 PRK11133 serB phosphoserine ph 99.7 6.6E-16 1.4E-20 136.5 13.2 116 80-197 107-224 (322)
7 PLN02770 haloacid dehalogenase 99.7 9E-16 2E-20 130.2 13.5 135 67-203 6-157 (248)
8 PRK09552 mtnX 2-hydroxy-3-keto 99.7 2.4E-15 5.2E-20 125.1 13.5 110 83-195 3-114 (219)
9 PLN03243 haloacid dehalogenase 99.6 3E-15 6.6E-20 128.5 13.6 123 78-203 19-158 (260)
10 TIGR01488 HAD-SF-IB Haloacid D 99.6 5.8E-15 1.3E-19 117.5 13.7 113 85-198 1-117 (177)
11 COG0637 Predicted phosphatase/ 99.6 4.9E-15 1.1E-19 124.1 12.5 121 82-203 1-135 (221)
12 TIGR03351 PhnX-like phosphonat 99.6 1.1E-14 2.5E-19 120.2 14.3 119 83-203 1-138 (220)
13 PRK13288 pyrophosphatase PpaX; 99.6 1.1E-14 2.4E-19 120.1 12.0 117 82-203 2-131 (214)
14 PRK13226 phosphoglycolate phos 99.6 1.7E-14 3.6E-19 120.9 12.8 121 80-202 9-143 (229)
15 PLN02575 haloacid dehalogenase 99.6 2.5E-14 5.4E-19 128.8 14.1 121 81-203 129-265 (381)
16 PRK13225 phosphoglycolate phos 99.6 1.7E-14 3.8E-19 124.6 12.5 118 82-202 61-190 (273)
17 TIGR01489 DKMTPPase-SF 2,3-dik 99.6 4.6E-14 9.9E-19 113.0 13.4 115 85-202 3-120 (188)
18 COG0546 Gph Predicted phosphat 99.6 2.9E-14 6.3E-19 119.0 12.6 120 81-202 2-137 (220)
19 TIGR01449 PGP_bact 2-phosphogl 99.6 6.1E-14 1.3E-18 114.9 12.8 116 86-203 1-134 (213)
20 TIGR02009 PGMB-YQAB-SF beta-ph 99.6 9.6E-14 2.1E-18 111.2 13.0 115 83-202 1-134 (185)
21 PRK10826 2-deoxyglucose-6-phos 99.5 1.9E-13 4.1E-18 113.4 15.0 120 82-203 6-141 (222)
22 PRK11587 putative phosphatase; 99.5 8.6E-14 1.9E-18 115.5 12.8 112 82-197 2-126 (218)
23 TIGR03333 salvage_mtnX 2-hydro 99.5 1.1E-13 2.4E-18 114.8 13.2 107 86-194 2-110 (214)
24 TIGR01422 phosphonatase phosph 99.5 1.5E-13 3.2E-18 116.3 13.6 117 83-203 2-149 (253)
25 PRK13222 phosphoglycolate phos 99.5 4.4E-13 9.5E-18 110.6 14.5 120 81-202 4-141 (226)
26 PRK13478 phosphonoacetaldehyde 99.5 4E-13 8.7E-18 114.9 14.1 119 81-203 2-151 (267)
27 TIGR02137 HSK-PSP phosphoserin 99.5 2.3E-13 4.9E-18 113.0 12.1 106 84-198 2-111 (203)
28 PRK10725 fructose-1-P/6-phosph 99.5 3.8E-13 8.2E-18 108.3 13.0 119 80-203 2-135 (188)
29 PRK13223 phosphoglycolate phos 99.5 2.3E-13 5E-18 117.2 12.5 120 81-202 11-149 (272)
30 PRK13582 thrH phosphoserine ph 99.5 2.7E-13 5.8E-18 110.7 12.1 107 83-198 1-111 (205)
31 PRK14988 GMP/IMP nucleotidase; 99.5 2.5E-13 5.4E-18 113.8 12.1 119 79-203 6-142 (224)
32 PRK06698 bifunctional 5'-methy 99.5 1.6E-13 3.4E-18 126.2 11.7 121 81-203 239-379 (459)
33 PRK10563 6-phosphogluconate ph 99.5 7.2E-13 1.6E-17 109.6 13.3 116 82-202 3-134 (221)
34 TIGR02253 CTE7 HAD superfamily 99.5 7E-13 1.5E-17 109.3 12.5 50 154-203 93-143 (221)
35 TIGR01454 AHBA_synth_RP 3-amin 99.5 4.7E-13 1E-17 109.7 11.2 113 86-202 1-123 (205)
36 TIGR01990 bPGM beta-phosphoglu 99.5 9.7E-13 2.1E-17 105.4 12.6 114 85-203 1-134 (185)
37 TIGR01428 HAD_type_II 2-haloal 99.5 2E-12 4.3E-17 105.3 13.6 121 83-203 1-141 (198)
38 PLN02940 riboflavin kinase 99.4 1.2E-12 2.7E-17 118.0 13.5 120 81-203 9-143 (382)
39 PRK09449 dUMP phosphatase; Pro 99.4 2E-12 4.3E-17 107.1 12.9 120 82-203 2-143 (224)
40 TIGR02252 DREG-2 REG-2-like, H 99.4 2.3E-12 5E-17 105.2 12.3 119 84-203 1-153 (203)
41 TIGR01548 HAD-SF-IA-hyp1 haloa 99.4 2.4E-12 5.3E-17 105.1 11.4 119 85-203 2-155 (197)
42 COG4359 Uncharacterized conser 99.4 6E-12 1.3E-16 102.4 12.6 119 83-203 2-123 (220)
43 TIGR02254 YjjG/YfnB HAD superf 99.4 9.2E-12 2E-16 102.4 13.3 120 83-203 1-145 (224)
44 PRK11590 hypothetical protein; 99.3 1.5E-11 3.2E-16 102.0 12.2 109 82-193 5-135 (211)
45 PF06888 Put_Phosphatase: Puta 99.3 1.7E-11 3.6E-16 104.0 12.1 114 85-202 2-121 (234)
46 PF13419 HAD_2: Haloacid dehal 99.3 3.9E-12 8.4E-17 99.2 6.8 115 86-203 1-126 (176)
47 PLN02919 haloacid dehalogenase 99.3 2.2E-11 4.8E-16 122.1 12.9 122 78-202 70-210 (1057)
48 TIGR02247 HAD-1A3-hyp Epoxide 99.3 1.1E-11 2.5E-16 101.8 8.7 51 153-203 92-145 (211)
49 PLN02779 haloacid dehalogenase 99.3 3.5E-11 7.5E-16 104.6 10.9 39 154-192 143-182 (286)
50 PRK09456 ?-D-glucose-1-phospha 99.3 3.6E-11 7.7E-16 98.4 10.4 120 84-203 1-134 (199)
51 TIGR01672 AphA HAD superfamily 99.3 4.9E-11 1.1E-15 101.4 10.9 114 68-202 45-166 (237)
52 TIGR01993 Pyr-5-nucltdase pyri 99.3 4E-11 8.6E-16 96.6 9.8 111 84-203 1-130 (184)
53 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.2 8.7E-11 1.9E-15 95.6 11.2 115 85-199 1-132 (202)
54 TIGR01509 HAD-SF-IA-v3 haloaci 99.2 4E-11 8.7E-16 95.3 9.0 49 154-203 84-133 (183)
55 KOG2914 Predicted haloacid-hal 99.2 9.2E-11 2E-15 98.8 10.3 112 78-192 5-130 (222)
56 TIGR01493 HAD-SF-IA-v2 Haloaci 99.2 1.4E-10 3E-15 92.4 8.8 112 85-203 1-132 (175)
57 TIGR01549 HAD-SF-IA-v1 haloaci 99.2 2.1E-10 4.5E-15 89.6 9.4 105 85-202 1-111 (154)
58 PHA02597 30.2 hypothetical pro 99.2 1.7E-10 3.7E-15 93.9 9.1 108 82-195 1-114 (197)
59 TIGR01545 YfhB_g-proteo haloac 99.1 1.3E-09 2.9E-14 90.7 12.3 111 82-193 4-134 (210)
60 PRK10748 flavin mononucleotide 99.1 9.8E-10 2.1E-14 92.6 10.5 46 153-203 111-156 (238)
61 COG1011 Predicted hydrolase (H 99.0 4.5E-09 9.8E-14 86.6 11.3 49 154-203 98-147 (229)
62 KOG3120 Predicted haloacid deh 98.9 5.6E-09 1.2E-13 87.4 8.8 113 82-198 12-129 (256)
63 PLN02811 hydrolase 98.9 1.2E-08 2.6E-13 84.8 10.4 110 90-202 1-127 (220)
64 PF12710 HAD: haloacid dehalog 98.9 5.6E-09 1.2E-13 83.7 7.3 41 158-198 92-133 (192)
65 cd01427 HAD_like Haloacid deha 98.9 6.1E-09 1.3E-13 77.3 6.4 48 153-200 22-70 (139)
66 TIGR01684 viral_ppase viral ph 98.8 1.4E-08 3E-13 88.6 8.0 47 157-203 148-195 (301)
67 PHA03398 viral phosphatase sup 98.7 3.5E-08 7.6E-13 86.2 7.8 47 157-203 150-197 (303)
68 TIGR01681 HAD-SF-IIIC HAD-supe 98.7 2.9E-08 6.2E-13 76.4 5.3 47 155-201 29-84 (128)
69 TIGR01685 MDP-1 magnesium-depe 98.7 1E-08 2.2E-13 83.4 2.8 51 153-203 43-104 (174)
70 PRK08238 hypothetical protein; 98.7 1.1E-07 2.5E-12 88.3 9.4 97 85-193 12-111 (479)
71 PRK11009 aphA acid phosphatase 98.6 1.3E-07 2.8E-12 80.5 8.8 110 68-202 45-168 (237)
72 TIGR01662 HAD-SF-IIIA HAD-supe 98.6 3.1E-07 6.7E-12 70.1 8.6 43 155-197 25-76 (132)
73 TIGR01544 HAD-SF-IE haloacid d 98.6 1.4E-06 2.9E-11 75.8 12.6 57 141-197 107-164 (277)
74 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 3.3E-07 7.3E-12 77.4 7.1 49 155-203 24-76 (242)
75 TIGR01664 DNA-3'-Pase DNA 3'-p 98.4 8.6E-07 1.9E-11 71.3 7.4 40 156-195 43-95 (166)
76 TIGR01533 lipo_e_P4 5'-nucleot 98.4 3.3E-06 7.1E-11 73.1 10.6 86 81-195 73-162 (266)
77 PLN02645 phosphoglycolate phos 98.3 2.1E-06 4.5E-11 75.5 8.8 80 68-203 13-96 (311)
78 TIGR01656 Histidinol-ppas hist 98.3 2E-06 4.3E-11 67.4 7.7 41 155-195 27-83 (147)
79 KOG3085 Predicted hydrolase (H 98.3 4.6E-06 1E-10 70.9 9.0 122 81-203 5-161 (237)
80 TIGR01691 enolase-ppase 2,3-di 98.2 2.8E-05 6E-10 65.5 12.9 39 153-191 93-132 (220)
81 PRK08942 D,D-heptose 1,7-bisph 98.2 4.7E-06 1E-10 67.2 7.2 28 154-181 28-55 (181)
82 PF00702 Hydrolase: haloacid d 98.1 4.4E-06 9.5E-11 67.6 5.9 42 154-195 126-168 (215)
83 PRK00192 mannosyl-3-phosphogly 98.0 2.2E-05 4.8E-10 67.4 7.9 42 157-198 23-65 (273)
84 PRK01158 phosphoglycolate phos 98.0 3E-05 6.6E-10 64.1 7.5 39 158-196 23-62 (230)
85 KOG3109 Haloacid dehalogenase- 97.9 9.8E-05 2.1E-09 62.1 9.8 115 82-201 14-145 (244)
86 TIGR01675 plant-AP plant acid 97.9 0.00013 2.8E-09 61.9 10.2 86 82-196 76-165 (229)
87 PF06941 NT5C: 5' nucleotidase 97.9 2.4E-05 5.2E-10 63.8 5.3 88 86-183 5-101 (191)
88 TIGR01487 SPP-like sucrose-pho 97.9 5.1E-05 1.1E-09 62.6 7.2 40 157-196 20-60 (215)
89 PF12689 Acid_PPase: Acid Phos 97.8 4.7E-06 1E-10 67.5 0.4 42 153-194 43-86 (169)
90 smart00775 LNS2 LNS2 domain. T 97.8 4.7E-05 1E-09 60.7 6.0 34 156-189 28-64 (157)
91 PRK15126 thiamin pyrimidine py 97.8 7.8E-05 1.7E-09 63.6 7.5 36 161-196 25-61 (272)
92 TIGR01663 PNK-3'Pase polynucle 97.8 9.2E-05 2E-09 69.7 8.5 39 156-194 198-249 (526)
93 PRK10976 putative hydrolase; P 97.8 8.7E-05 1.9E-09 63.0 7.5 36 161-196 25-61 (266)
94 PRK10444 UMP phosphatase; Prov 97.7 5.7E-05 1.2E-09 64.5 5.6 48 156-203 18-69 (248)
95 COG0647 NagD Predicted sugar p 97.7 5.8E-05 1.3E-09 65.4 5.5 49 155-203 24-77 (269)
96 PRK10530 pyridoxal phosphate ( 97.7 0.00014 3E-09 61.6 7.6 35 161-195 26-61 (272)
97 TIGR01452 PGP_euk phosphoglyco 97.7 0.00013 2.8E-09 62.9 7.3 47 156-202 19-69 (279)
98 COG0561 Cof Predicted hydrolas 97.7 0.00014 3.1E-09 61.7 7.4 37 160-196 25-62 (264)
99 PRK10513 sugar phosphate phosp 97.7 0.00015 3.2E-09 61.6 7.4 35 161-195 26-61 (270)
100 smart00577 CPDc catalytic doma 97.6 0.0001 2.2E-09 57.8 5.1 48 154-202 44-93 (148)
101 PRK12702 mannosyl-3-phosphogly 97.6 0.00024 5.2E-09 62.4 7.7 38 160-197 23-61 (302)
102 PHA02530 pseT polynucleotide k 97.6 9.2E-05 2E-09 64.0 4.9 42 154-195 186-228 (300)
103 PRK05446 imidazole glycerol-ph 97.6 0.00018 3.8E-09 64.8 6.8 41 154-194 29-85 (354)
104 TIGR02244 HAD-IG-Ncltidse HAD 97.6 0.00012 2.7E-09 65.5 5.4 50 154-203 183-241 (343)
105 PRK09484 3-deoxy-D-manno-octul 97.5 0.0001 2.3E-09 59.8 4.2 35 163-197 56-91 (183)
106 PRK03669 mannosyl-3-phosphogly 97.5 0.00034 7.4E-09 59.9 7.6 34 161-194 30-64 (271)
107 TIGR01680 Veg_Stor_Prot vegeta 97.4 0.0012 2.7E-08 57.3 9.8 43 153-195 143-189 (275)
108 TIGR01261 hisB_Nterm histidino 97.4 0.00033 7.1E-09 56.1 5.6 47 154-201 28-90 (161)
109 PF03767 Acid_phosphat_B: HAD 97.3 0.00019 4.2E-09 60.6 3.3 86 81-195 70-159 (229)
110 PTZ00174 phosphomannomutase; P 97.3 0.00073 1.6E-08 57.3 6.5 18 80-97 2-19 (247)
111 PLN02177 glycerol-3-phosphate 97.2 0.0043 9.3E-08 58.3 11.3 41 155-199 110-152 (497)
112 COG4996 Predicted phosphatase 97.1 0.00047 1E-08 53.9 3.7 50 153-202 39-89 (164)
113 TIGR01689 EcbF-BcbF capsule bi 97.1 0.0016 3.5E-08 50.3 6.4 29 155-183 24-52 (126)
114 PF13344 Hydrolase_6: Haloacid 97.1 0.00083 1.8E-08 49.6 4.5 48 155-202 14-65 (101)
115 TIGR00213 GmhB_yaeD D,D-heptos 97.1 0.0012 2.7E-08 52.9 5.9 29 154-182 25-53 (176)
116 PLN02887 hydrolase family prot 97.1 0.0014 3E-08 62.6 7.1 35 160-194 330-365 (580)
117 PRK06769 hypothetical protein; 97.0 0.0014 3E-08 52.8 5.1 45 154-198 27-80 (173)
118 TIGR01456 CECR5 HAD-superfamil 96.9 0.0011 2.4E-08 58.5 4.6 15 85-99 2-16 (321)
119 TIGR01484 HAD-SF-IIB HAD-super 96.9 0.0025 5.4E-08 51.8 6.0 34 158-191 20-54 (204)
120 PRK14502 bifunctional mannosyl 96.7 0.0045 9.7E-08 60.0 7.0 35 161-195 439-474 (694)
121 PF05152 DUF705: Protein of un 96.6 0.011 2.4E-07 51.6 8.3 47 156-202 143-190 (297)
122 TIGR02250 FCP1_euk FCP1-like p 96.6 0.0035 7.6E-08 50.0 4.7 47 154-201 57-106 (156)
123 TIGR01668 YqeG_hyp_ppase HAD s 96.6 0.0042 9.1E-08 49.8 5.1 41 155-195 43-85 (170)
124 PRK10187 trehalose-6-phosphate 96.5 0.0065 1.4E-07 52.3 6.0 37 156-192 37-75 (266)
125 TIGR01686 FkbH FkbH-like domai 96.4 0.0044 9.5E-08 54.6 4.8 47 155-201 31-82 (320)
126 PLN02499 glycerol-3-phosphate 96.4 0.032 7E-07 52.3 10.3 34 163-197 101-136 (498)
127 TIGR01525 ATPase-IB_hvy heavy 96.1 0.0082 1.8E-07 56.8 5.1 46 153-198 382-429 (556)
128 TIGR02251 HIF-SF_euk Dullard-l 95.9 0.016 3.5E-07 46.2 5.2 45 154-199 41-87 (162)
129 TIGR01512 ATPase-IB2_Cd heavy 95.8 0.012 2.5E-07 55.6 4.8 45 154-198 361-407 (536)
130 TIGR01670 YrbI-phosphatas 3-de 95.8 0.016 3.5E-07 45.7 4.5 36 163-198 36-72 (154)
131 COG2503 Predicted secreted aci 95.7 0.043 9.3E-07 47.1 7.1 85 82-195 78-167 (274)
132 PF08235 LNS2: LNS2 (Lipin/Ned 95.4 0.046 9.9E-07 43.9 5.8 30 156-185 28-57 (157)
133 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.3 0.035 7.6E-07 47.1 5.3 48 156-203 18-69 (249)
134 PRK14501 putative bifunctional 95.2 0.054 1.2E-06 53.0 7.1 39 155-193 514-554 (726)
135 COG4229 Predicted enolase-phos 95.1 0.13 2.9E-06 42.5 7.9 36 153-188 101-136 (229)
136 TIGR01511 ATPase-IB1_Cu copper 95.1 0.031 6.8E-07 53.1 5.0 41 154-194 404-445 (562)
137 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.1 0.023 5E-07 48.6 3.7 47 156-202 22-72 (257)
138 TIGR02245 HAD_IIID1 HAD-superf 95.0 0.053 1.1E-06 45.0 5.5 38 155-193 45-83 (195)
139 PLN02423 phosphomannomutase 94.3 0.026 5.7E-07 47.9 2.0 19 81-99 4-23 (245)
140 PLN02205 alpha,alpha-trehalose 94.2 0.15 3.3E-06 50.9 7.4 34 156-189 617-651 (854)
141 TIGR02726 phenyl_P_delta pheny 94.2 0.076 1.6E-06 42.9 4.4 35 164-198 43-78 (169)
142 TIGR02726 phenyl_P_delta pheny 94.1 0.026 5.7E-07 45.6 1.6 18 80-97 4-21 (169)
143 PF05761 5_nucleotid: 5' nucle 93.9 0.09 2E-06 48.9 4.8 50 154-203 182-241 (448)
144 TIGR02463 MPGP_rel mannosyl-3- 93.6 0.18 4E-06 41.3 5.8 35 160-194 21-56 (221)
145 TIGR01670 YrbI-phosphatas 3-de 93.5 0.035 7.5E-07 43.7 1.3 15 83-97 1-15 (154)
146 PF05822 UMPH-1: Pyrimidine 5' 93.2 0.15 3.2E-06 43.9 4.7 55 141-195 76-131 (246)
147 TIGR02461 osmo_MPG_phos mannos 93.1 0.25 5.4E-06 41.3 5.9 40 157-196 17-57 (225)
148 PRK10671 copA copper exporting 92.8 0.18 3.9E-06 50.1 5.4 44 154-197 649-693 (834)
149 COG1778 Low specificity phosph 92.7 0.052 1.1E-06 43.7 1.2 22 77-98 2-23 (170)
150 TIGR01522 ATPase-IIA2_Ca golgi 92.6 0.2 4.2E-06 50.3 5.4 42 155-196 528-570 (884)
151 TIGR00099 Cof-subfamily Cof su 92.3 0.33 7.1E-06 40.8 5.7 39 157-195 18-57 (256)
152 TIGR01497 kdpB K+-transporting 92.3 0.21 4.5E-06 48.8 4.9 43 155-197 446-489 (675)
153 TIGR01482 SPP-subfamily Sucros 92.1 0.38 8.2E-06 39.3 5.7 39 158-196 18-57 (225)
154 TIGR01482 SPP-subfamily Sucros 92.1 0.063 1.4E-06 43.9 1.0 14 86-99 1-14 (225)
155 PRK01122 potassium-transportin 92.0 0.27 5.9E-06 48.0 5.4 43 155-197 445-488 (679)
156 PRK11033 zntA zinc/cadmium/mer 91.9 0.28 6E-06 48.3 5.4 42 154-195 567-609 (741)
157 COG4030 Uncharacterized protei 91.9 0.99 2.1E-05 38.8 7.9 53 141-195 70-123 (315)
158 PTZ00445 p36-lilke protein; Pr 91.7 0.19 4.1E-06 42.3 3.4 29 155-183 75-103 (219)
159 PF11019 DUF2608: Protein of u 91.6 1.6 3.4E-05 37.4 9.1 40 155-194 81-124 (252)
160 PLN03064 alpha,alpha-trehalose 91.6 0.5 1.1E-05 47.8 6.8 39 154-192 621-661 (934)
161 PF08282 Hydrolase_3: haloacid 91.5 0.38 8.3E-06 39.0 5.0 41 156-196 16-57 (254)
162 PRK14010 potassium-transportin 91.4 0.34 7.3E-06 47.3 5.3 44 154-197 440-484 (673)
163 TIGR01486 HAD-SF-IIB-MPGP mann 91.2 0.54 1.2E-05 39.6 5.8 36 160-195 21-57 (256)
164 COG2179 Predicted hydrolase of 91.1 0.45 9.8E-06 38.6 4.9 42 155-196 46-88 (175)
165 PF08282 Hydrolase_3: haloacid 90.9 0.13 2.9E-06 41.8 1.7 13 86-98 1-13 (254)
166 PF08645 PNK3P: Polynucleotide 90.4 0.14 3.1E-06 40.8 1.4 25 156-180 30-54 (159)
167 TIGR00099 Cof-subfamily Cof su 90.0 0.16 3.4E-06 42.8 1.4 14 85-98 1-14 (256)
168 COG2217 ZntA Cation transport 89.9 0.51 1.1E-05 46.3 5.1 44 154-197 536-580 (713)
169 KOG2470 Similar to IMP-GMP spe 89.7 0.89 1.9E-05 41.3 5.9 48 155-202 240-291 (510)
170 TIGR01457 HAD-SF-IIA-hyp2 HAD- 89.6 0.2 4.2E-06 42.6 1.8 17 83-99 1-17 (249)
171 TIGR02463 MPGP_rel mannosyl-3- 89.5 0.18 4E-06 41.3 1.4 14 85-98 1-14 (221)
172 TIGR02461 osmo_MPG_phos mannos 89.3 0.19 4.1E-06 42.1 1.4 13 85-97 1-13 (225)
173 PF13344 Hydrolase_6: Haloacid 88.9 0.23 4.9E-06 36.5 1.4 14 86-99 1-14 (101)
174 TIGR01460 HAD-SF-IIA Haloacid 88.8 0.9 1.9E-05 38.1 5.2 48 155-202 14-66 (236)
175 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.6 0.24 5.1E-06 42.3 1.5 40 156-195 121-161 (257)
176 TIGR01647 ATPase-IIIA_H plasma 87.9 0.91 2E-05 44.8 5.3 41 155-195 442-483 (755)
177 TIGR01486 HAD-SF-IIB-MPGP mann 87.5 0.27 5.8E-06 41.5 1.2 15 85-99 1-15 (256)
178 PF03031 NIF: NLI interacting 87.5 0.27 5.9E-06 38.3 1.2 39 154-193 35-74 (159)
179 PF08645 PNK3P: Polynucleotide 87.0 0.55 1.2E-05 37.3 2.7 16 84-99 1-16 (159)
180 KOG3128 Uncharacterized conser 86.8 0.71 1.5E-05 40.0 3.3 55 141-195 124-180 (298)
181 TIGR01460 HAD-SF-IIA Haloacid 86.7 0.28 6.2E-06 41.2 0.9 14 86-99 1-14 (236)
182 COG2216 KdpB High-affinity K+ 86.5 1 2.3E-05 42.7 4.5 44 155-198 447-491 (681)
183 COG5083 SMP2 Uncharacterized p 86.3 0.6 1.3E-05 43.4 2.8 29 77-105 368-397 (580)
184 TIGR01116 ATPase-IIA1_Ca sarco 85.8 1.3 2.9E-05 44.6 5.3 42 154-195 536-578 (917)
185 TIGR00685 T6PP trehalose-phosp 85.4 0.47 1E-05 40.0 1.6 15 83-97 3-17 (244)
186 PF03031 NIF: NLI interacting 85.3 1.3 2.9E-05 34.3 4.1 16 84-99 1-16 (159)
187 TIGR02471 sucr_syn_bact_C sucr 85.2 0.41 8.9E-06 39.8 1.2 15 85-99 1-15 (236)
188 TIGR01517 ATPase-IIB_Ca plasma 84.2 2.3 5E-05 43.0 6.1 40 155-194 579-619 (941)
189 TIGR01524 ATPase-IIIB_Mg magne 84.0 1.9 4E-05 43.4 5.3 40 155-194 515-555 (867)
190 COG0731 Fe-S oxidoreductases [ 83.8 2 4.3E-05 37.9 4.8 33 153-185 90-123 (296)
191 PRK10517 magnesium-transportin 83.3 1.9 4.1E-05 43.6 5.1 40 155-194 550-590 (902)
192 TIGR01485 SPP_plant-cyano sucr 83.3 2.2 4.7E-05 35.8 4.8 39 158-196 24-63 (249)
193 PRK15122 magnesium-transportin 83.1 1.9 4.1E-05 43.5 5.0 40 155-194 550-590 (903)
194 TIGR01523 ATPase-IID_K-Na pota 82.9 2.1 4.6E-05 43.9 5.3 41 154-194 645-686 (1053)
195 TIGR00213 GmhB_yaeD D,D-heptos 82.2 0.75 1.6E-05 36.6 1.5 13 84-96 2-14 (176)
196 PF09419 PGP_phosphatase: Mito 82.1 1.5 3.2E-05 35.6 3.1 18 80-97 38-55 (168)
197 COG0474 MgtA Cation transport 82.0 3.4 7.4E-05 41.8 6.3 44 154-197 546-590 (917)
198 COG3769 Predicted hydrolase (H 81.8 2.7 5.9E-05 35.9 4.7 37 161-197 29-66 (274)
199 KOG2882 p-Nitrophenyl phosphat 81.5 2.7 5.9E-05 37.1 4.8 41 155-195 38-82 (306)
200 COG5663 Uncharacterized conser 80.6 0.9 2E-05 37.1 1.4 31 154-185 71-101 (194)
201 COG0241 HisB Histidinol phosph 80.6 1.9 4.2E-05 35.3 3.4 25 155-179 31-55 (181)
202 TIGR01106 ATPase-IIC_X-K sodiu 80.5 2.6 5.7E-05 42.9 5.0 40 154-193 567-607 (997)
203 TIGR01657 P-ATPase-V P-type AT 80.5 3.1 6.7E-05 42.7 5.5 40 154-193 655-695 (1054)
204 PLN03017 trehalose-phosphatase 80.3 1.5 3.2E-05 39.9 2.8 21 75-95 102-123 (366)
205 PRK06769 hypothetical protein; 80.2 1.1 2.5E-05 35.7 1.9 18 80-97 1-18 (173)
206 TIGR01494 ATPase_P-type ATPase 80.0 3.4 7.4E-05 38.5 5.3 40 154-193 346-386 (499)
207 KOG4549 Magnesium-dependent ph 78.6 4.2 9.1E-05 31.7 4.4 42 154-195 43-86 (144)
208 PLN02151 trehalose-phosphatase 78.3 1.4 3E-05 39.9 2.0 22 74-95 88-110 (354)
209 TIGR01485 SPP_plant-cyano sucr 77.0 1.4 3E-05 37.0 1.5 12 85-96 3-14 (249)
210 TIGR01261 hisB_Nterm histidino 76.8 1.6 3.5E-05 34.7 1.8 14 84-97 2-15 (161)
211 PRK13762 tRNA-modifying enzyme 76.8 4.2 9.1E-05 36.1 4.6 31 153-183 140-170 (322)
212 PF09419 PGP_phosphatase: Mito 76.6 5.7 0.00012 32.2 4.9 44 153-196 57-110 (168)
213 KOG0207 Cation transport ATPas 75.4 5.1 0.00011 40.3 5.1 42 154-195 722-764 (951)
214 COG1778 Low specificity phosph 75.4 4.6 9.9E-05 32.7 4.0 40 156-197 38-78 (170)
215 TIGR01652 ATPase-Plipid phosph 75.1 4.1 8.9E-05 41.8 4.6 40 154-193 630-670 (1057)
216 COG1877 OtsB Trehalose-6-phosp 74.6 1.8 4E-05 37.5 1.7 16 82-97 17-32 (266)
217 TIGR01668 YqeG_hyp_ppase HAD s 74.4 2.9 6.3E-05 33.2 2.7 25 74-99 17-41 (170)
218 TIGR02109 PQQ_syn_pqqE coenzym 74.1 8.4 0.00018 34.1 5.8 43 153-195 63-108 (358)
219 KOG2882 p-Nitrophenyl phosphat 73.8 3.7 8E-05 36.3 3.4 26 74-99 13-38 (306)
220 COG4087 Soluble P-type ATPase 73.1 5.6 0.00012 31.3 3.8 44 153-197 28-72 (152)
221 TIGR02495 NrdG2 anaerobic ribo 71.7 11 0.00025 30.0 5.6 40 154-193 73-113 (191)
222 KOG2134 Polynucleotide kinase 71.4 1.5 3.3E-05 40.1 0.4 26 74-99 66-91 (422)
223 COG2179 Predicted hydrolase of 70.1 2.9 6.2E-05 34.1 1.7 19 80-98 25-43 (175)
224 PLN02580 trehalose-phosphatase 69.3 3 6.4E-05 38.2 1.8 14 84-97 120-133 (384)
225 TIGR02471 sucr_syn_bact_C sucr 68.1 11 0.00023 31.2 4.9 33 162-195 22-55 (236)
226 TIGR01459 HAD-SF-IIA-hyp4 HAD- 68.0 1.4 3E-05 36.9 -0.5 39 157-196 140-179 (242)
227 smart00577 CPDc catalytic doma 67.7 3.8 8.1E-05 31.8 1.9 15 84-98 3-17 (148)
228 PRK05301 pyrroloquinoline quin 67.0 14 0.00031 33.0 5.8 43 153-195 72-117 (378)
229 KOG0204 Calcium transporting A 66.5 10 0.00022 38.3 4.9 40 154-193 646-686 (1034)
230 KOG0202 Ca2+ transporting ATPa 66.3 11 0.00024 37.9 5.1 42 154-195 583-625 (972)
231 TIGR01686 FkbH FkbH-like domai 65.6 3.7 8E-05 36.1 1.6 16 82-97 2-17 (320)
232 TIGR03365 Bsubt_queE 7-cyano-7 64.5 6.2 0.00013 33.3 2.8 31 154-184 83-113 (238)
233 PLN03190 aminophospholipid tra 64.3 12 0.00026 39.1 5.2 40 154-193 725-765 (1178)
234 PF02358 Trehalose_PPase: Treh 64.0 3.5 7.6E-05 34.3 1.2 12 87-98 1-12 (235)
235 PRK10076 pyruvate formate lyas 62.8 14 0.00031 30.8 4.6 36 154-189 49-87 (213)
236 TIGR02251 HIF-SF_euk Dullard-l 61.8 5 0.00011 31.8 1.6 15 84-98 2-16 (162)
237 TIGR02250 FCP1_euk FCP1-like p 60.9 5.8 0.00013 31.4 1.9 18 82-99 5-22 (156)
238 PF05116 S6PP: Sucrose-6F-phos 59.7 6.7 0.00015 33.2 2.2 39 160-198 133-184 (247)
239 TIGR03278 methan_mark_10 putat 59.5 20 0.00043 33.0 5.3 43 153-195 84-131 (404)
240 PLN02382 probable sucrose-phos 58.8 5.5 0.00012 36.6 1.6 13 85-97 11-23 (413)
241 PLN03063 alpha,alpha-trehalose 56.6 10 0.00022 37.9 3.1 29 69-97 491-521 (797)
242 TIGR02244 HAD-IG-Ncltidse HAD 56.6 6 0.00013 35.6 1.4 19 80-98 9-27 (343)
243 TIGR03470 HpnH hopanoid biosyn 54.5 15 0.00031 32.4 3.5 31 153-183 82-112 (318)
244 KOG3189 Phosphomannomutase [Li 49.2 10 0.00022 32.0 1.5 14 85-98 13-26 (252)
245 KOG3040 Predicted sugar phosph 48.2 31 0.00067 29.4 4.2 41 155-195 23-67 (262)
246 TIGR02826 RNR_activ_nrdG3 anae 48.0 32 0.00068 27.0 4.1 27 157-183 74-100 (147)
247 TIGR01452 PGP_euk phosphoglyco 47.5 12 0.00027 32.0 1.8 27 156-183 144-170 (279)
248 TIGR02494 PFLE_PFLC glycyl-rad 47.0 29 0.00063 29.8 4.1 29 154-182 136-165 (295)
249 KOG2469 IMP-GMP specific 5'-nu 46.7 9.8 0.00021 35.1 1.1 46 158-203 201-250 (424)
250 TIGR02493 PFLA pyruvate format 45.9 41 0.00088 27.7 4.7 36 154-189 76-116 (235)
251 PLN02580 trehalose-phosphatase 45.8 31 0.00067 31.6 4.2 35 154-189 140-174 (384)
252 PLN02151 trehalose-phosphatase 45.4 29 0.00063 31.4 3.9 35 154-189 119-153 (354)
253 PLN03017 trehalose-phosphatase 45.0 32 0.00069 31.3 4.2 35 154-189 132-166 (366)
254 PRK11145 pflA pyruvate formate 44.8 36 0.00077 28.4 4.2 29 154-182 81-110 (246)
255 smart00497 IENR1 Intron encode 44.4 31 0.00068 21.4 3.0 28 84-111 3-31 (53)
256 COG3769 Predicted hydrolase (H 44.1 14 0.00031 31.6 1.7 15 82-96 6-20 (274)
257 smart00266 CAD Domains present 43.9 20 0.00043 25.2 2.1 18 83-100 38-55 (74)
258 TIGR02668 moaA_archaeal probab 43.8 56 0.0012 28.1 5.4 43 153-195 66-111 (302)
259 COG1180 PflA Pyruvate-formate 43.2 22 0.00048 30.5 2.8 30 154-183 95-124 (260)
260 PRK13717 conjugal transfer pro 43.1 13 0.00028 28.8 1.1 19 76-94 38-56 (128)
261 cd06539 CIDE_N_A CIDE_N domain 42.9 22 0.00049 25.2 2.2 18 83-100 40-57 (78)
262 cd05014 SIS_Kpsf KpsF-like pro 41.2 31 0.00067 25.3 3.0 32 156-187 59-90 (128)
263 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.6 33 0.00072 25.1 2.9 31 157-187 59-89 (126)
264 TIGR02666 moaA molybdenum cofa 38.7 83 0.0018 27.5 5.8 42 154-195 70-115 (334)
265 COG1334 FlaG Uncharacterized f 38.4 8 0.00017 29.7 -0.6 24 70-97 95-118 (120)
266 PF05761 5_nucleotid: 5' nucle 38.4 19 0.00041 33.6 1.7 19 80-98 9-27 (448)
267 COG0241 HisB Histidinol phosph 37.9 20 0.00043 29.4 1.6 17 83-99 5-21 (181)
268 PRK13361 molybdenum cofactor b 37.4 82 0.0018 27.7 5.5 43 153-195 71-117 (329)
269 PRK10671 copA copper exporting 37.2 25 0.00055 35.1 2.5 24 75-98 509-532 (834)
270 PF09828 Chrome_Resist: Chroma 36.9 28 0.0006 27.3 2.1 43 70-112 30-76 (135)
271 cd05017 SIS_PGI_PMI_1 The memb 36.3 71 0.0015 23.5 4.3 35 157-193 56-91 (119)
272 KOG2116 Protein involved in pl 36.3 27 0.00058 34.3 2.3 22 83-104 530-551 (738)
273 PF06901 FrpC: RTX iron-regula 35.7 23 0.0005 29.7 1.6 32 59-96 40-71 (271)
274 COG4275 Uncharacterized conser 34.9 36 0.00079 26.5 2.5 43 70-112 32-78 (143)
275 COG0602 NrdG Organic radical a 34.4 50 0.0011 27.5 3.5 29 155-183 83-111 (212)
276 KOG2469 IMP-GMP specific 5'-nu 34.4 47 0.001 30.7 3.5 19 80-98 24-42 (424)
277 PF00578 AhpC-TSA: AhpC/TSA fa 34.3 1E+02 0.0022 22.0 4.8 37 158-194 46-83 (124)
278 PLN02382 probable sucrose-phos 34.1 92 0.002 28.6 5.5 39 159-197 33-72 (413)
279 cd06537 CIDE_N_B CIDE_N domain 34.0 26 0.00056 25.0 1.4 19 83-101 39-57 (81)
280 PLN02951 Molybderin biosynthes 33.8 84 0.0018 28.4 5.1 43 153-195 116-162 (373)
281 PF05116 S6PP: Sucrose-6F-phos 33.6 59 0.0013 27.4 3.9 36 167-203 31-67 (247)
282 COG3700 AphA Acid phosphatase 33.5 45 0.00098 27.8 2.9 30 156-185 115-144 (237)
283 PLN02423 phosphomannomutase 33.5 70 0.0015 26.9 4.3 34 155-189 24-57 (245)
284 PRK14129 heat shock protein Hs 33.0 39 0.00085 25.3 2.3 25 81-105 17-42 (105)
285 TIGR03127 RuMP_HxlB 6-phospho 32.3 46 0.001 26.2 2.9 32 156-187 84-115 (179)
286 cd01615 CIDE_N CIDE_N domain, 32.0 32 0.0007 24.4 1.6 18 83-100 40-57 (78)
287 cd06536 CIDE_N_ICAD CIDE_N dom 31.4 33 0.00071 24.5 1.6 17 84-100 43-59 (80)
288 KOG0323 TFIIF-interacting CTD 31.4 72 0.0016 31.2 4.4 38 154-192 200-238 (635)
289 TIGR01290 nifB nitrogenase cof 31.2 1.1E+02 0.0023 28.4 5.5 37 159-195 96-136 (442)
290 KOG0206 P-type ATPase [General 30.7 83 0.0018 33.0 4.9 41 153-193 649-690 (1151)
291 cd05710 SIS_1 A subgroup of th 30.7 53 0.0012 24.3 2.8 31 156-186 59-89 (120)
292 cd06589 GH31 The enzymes of gl 30.3 60 0.0013 27.6 3.4 28 155-182 63-90 (265)
293 PF01380 SIS: SIS domain SIS d 30.0 62 0.0013 23.5 3.0 32 156-187 65-96 (131)
294 PF00875 DNA_photolyase: DNA p 29.7 88 0.0019 24.2 4.1 40 157-196 52-92 (165)
295 cd05013 SIS_RpiR RpiR-like pro 29.6 57 0.0012 23.7 2.8 29 158-186 74-102 (139)
296 KOG1154 Gamma-glutamyl kinase 29.6 58 0.0013 28.3 3.1 28 158-185 35-62 (285)
297 smart00540 LEM in nuclear memb 29.0 56 0.0012 20.5 2.2 29 161-189 9-37 (44)
298 PF08620 RPAP1_C: RPAP1-like, 28.5 21 0.00045 25.0 0.2 10 86-95 3-12 (73)
299 PRK00164 moaA molybdenum cofac 28.2 1.4E+02 0.003 26.0 5.4 43 153-195 75-121 (331)
300 PF13911 AhpC-TSA_2: AhpC/TSA 27.9 1.8E+02 0.0039 21.0 5.2 34 162-195 4-38 (115)
301 cd05006 SIS_GmhA Phosphoheptos 27.9 64 0.0014 25.4 3.0 29 156-184 113-141 (177)
302 cd02071 MM_CoA_mut_B12_BD meth 27.8 1.4E+02 0.003 22.2 4.7 43 156-198 63-108 (122)
303 PF02358 Trehalose_PPase: Treh 27.4 61 0.0013 26.8 2.9 36 154-189 18-54 (235)
304 COG4850 Uncharacterized conser 27.3 1.2E+02 0.0027 27.4 4.8 36 153-188 194-230 (373)
305 cd04795 SIS SIS domain. SIS (S 27.1 67 0.0015 21.5 2.6 22 157-178 60-81 (87)
306 cd06595 GH31_xylosidase_XylS-l 27.1 72 0.0016 27.6 3.4 26 155-180 71-96 (292)
307 PF00072 Response_reg: Respons 27.0 1.2E+02 0.0026 20.9 4.0 39 159-197 57-98 (112)
308 PF01976 DUF116: Protein of un 26.9 63 0.0014 25.8 2.7 29 159-189 74-102 (158)
309 COG0263 ProB Glutamate 5-kinas 26.5 68 0.0015 29.2 3.1 24 158-181 31-54 (369)
310 PF13588 HSDR_N_2: Type I rest 26.3 59 0.0013 23.6 2.3 25 158-182 68-92 (112)
311 PF06189 5-nucleotidase: 5'-nu 25.9 32 0.00069 30.0 0.9 15 85-99 123-137 (264)
312 PF02017 CIDE-N: CIDE-N domain 25.8 64 0.0014 22.8 2.3 17 83-99 40-56 (78)
313 COG0535 Predicted Fe-S oxidore 24.7 1.6E+02 0.0036 25.1 5.2 43 154-196 76-122 (347)
314 TIGR00221 nagA N-acetylglucosa 24.3 1.8E+02 0.004 26.3 5.6 54 141-194 152-214 (380)
315 cd05005 SIS_PHI Hexulose-6-pho 24.3 81 0.0018 24.9 3.0 31 156-186 87-117 (179)
316 COG2810 Predicted type IV rest 24.3 77 0.0017 27.4 2.9 28 155-182 81-108 (284)
317 PRK13937 phosphoheptose isomer 24.2 77 0.0017 25.5 2.8 31 156-186 118-148 (188)
318 cd06538 CIDE_N_FSP27 CIDE_N do 24.1 48 0.001 23.6 1.4 17 84-100 40-56 (79)
319 PLN03063 alpha,alpha-trehalose 24.1 1.1E+02 0.0025 30.6 4.5 38 155-192 532-571 (797)
320 smart00851 MGS MGS-like domain 23.6 1.2E+02 0.0026 21.1 3.4 19 161-180 3-21 (90)
321 cd06594 GH31_glucosidase_YihQ 23.2 90 0.0019 27.5 3.3 26 154-179 67-92 (317)
322 cd07041 STAS_RsbR_RsbS_like Su 22.7 2.3E+02 0.0051 20.0 5.0 37 161-199 63-101 (109)
323 cd06591 GH31_xylosidase_XylS X 22.6 98 0.0021 27.2 3.4 25 154-178 62-86 (319)
324 cd08564 GDPD_GsGDE_like Glycer 22.6 1.8E+02 0.0039 24.5 5.0 36 160-195 212-251 (265)
325 TIGR00441 gmhA phosphoheptose 22.6 91 0.002 24.2 2.9 30 156-185 91-120 (154)
326 TIGR02765 crypto_DASH cryptoch 22.6 1E+02 0.0022 28.0 3.7 38 158-195 61-99 (429)
327 PRK00994 F420-dependent methyl 22.5 1.3E+02 0.0028 26.1 3.9 42 155-196 71-113 (277)
328 cd06599 GH31_glycosidase_Aec37 21.8 1E+02 0.0022 27.0 3.4 26 154-179 69-94 (317)
329 COG1763 MobB Molybdopterin-gua 21.7 97 0.0021 24.8 2.9 21 160-180 19-39 (161)
330 COG2044 Predicted peroxiredoxi 21.5 1.3E+02 0.0029 23.0 3.4 29 154-182 58-86 (120)
331 cd06592 GH31_glucosidase_KIAA1 21.4 1.1E+02 0.0023 26.7 3.4 26 155-180 67-92 (303)
332 cd04906 ACT_ThrD-I_1 First of 21.2 1.1E+02 0.0024 21.1 2.9 24 159-182 54-77 (85)
333 PF13580 SIS_2: SIS domain; PD 21.1 74 0.0016 24.2 2.1 23 157-179 116-138 (138)
334 PF05988 DUF899: Bacterial pro 20.9 1.8E+02 0.0038 24.6 4.4 39 156-194 91-130 (211)
335 TIGR02886 spore_II_AA anti-sig 20.9 2.4E+02 0.0052 19.8 4.7 36 162-199 62-98 (106)
336 cd06593 GH31_xylosidase_YicI Y 20.8 1.1E+02 0.0024 26.4 3.4 26 154-179 62-87 (308)
337 KOG1605 TFIIF-interacting CTD 20.7 65 0.0014 28.0 1.8 19 80-98 86-104 (262)
338 cd01335 Radical_SAM Radical SA 20.5 2.6E+02 0.0057 20.9 5.2 41 155-195 56-101 (204)
339 cd04256 AAK_P5CS_ProBA AAK_P5C 20.5 98 0.0021 26.9 2.9 31 159-189 35-65 (284)
340 cd06598 GH31_transferase_CtsZ 20.4 1.2E+02 0.0026 26.6 3.5 26 154-179 66-91 (317)
341 PF13439 Glyco_transf_4: Glyco 20.1 1.3E+02 0.0027 22.2 3.2 24 160-183 18-41 (177)
342 cd08555 PI-PLCc_GDPD_SF Cataly 20.1 2.4E+02 0.0051 22.2 4.9 35 161-195 139-174 (179)
No 1
>PLN02954 phosphoserine phosphatase
Probab=99.88 E-value=1.2e-21 Score=162.35 Aligned_cols=123 Identities=82% Similarity=1.315 Sum_probs=110.3
Q ss_pred ChHHHHhhccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHh
Q 028799 72 PSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEK 151 (203)
Q Consensus 72 ~~~~~~~~~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~ 151 (203)
|||.++++|.++++|+|||||||+|++.+..+++.+|......++..++++|.+++.+.+..+++.+....+.+.++++.
T Consensus 1 ~~~~~~~~~~~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T PLN02954 1 PSKDVLELWRSADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEK 80 (224)
T ss_pred ChHHHHHHHccCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999998766677888899999999999888887765566677777776
Q ss_pred CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 152 RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 152 ~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
...+++||+.++|+.|+++|++++|+||+++..++.++ .+|++
T Consensus 81 ~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 81 RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 55679999999999999999999999999999999999 99997
No 2
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=153.88 Aligned_cols=122 Identities=58% Similarity=0.927 Sum_probs=116.1
Q ss_pred HHHHhhccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCC
Q 028799 74 KEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRP 153 (203)
Q Consensus 74 ~~~~~~~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~ 153 (203)
+|..++|+..++||||||.|++..|.++++++++|....+.+++.+.|+|.++|.+++++|+..++++..+++++..+.+
T Consensus 7 ~e~~~~~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k 86 (227)
T KOG1615|consen 7 SELAKLWRSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQK 86 (227)
T ss_pred HHHHHHHHhcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999888888888887767
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+.+.||++|++..|+++|.+++++|+|++.+++++. .+||+.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 899999999999999999999999999999999999 999986
No 3
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.76 E-value=1.8e-17 Score=136.96 Aligned_cols=121 Identities=36% Similarity=0.518 Sum_probs=100.6
Q ss_pred HHhhccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC-CHHHHHHHHHhCCC
Q 028799 76 VLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPP 154 (203)
Q Consensus 76 ~~~~~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~l~~~~~~~~~ 154 (203)
+.++..++++++|||||||+|++.+..+++.+|.+....++..+++.|..++.+.+..++..+.+ ..+.+.++.+. .
T Consensus 7 ~~~~~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (219)
T TIGR00338 7 LSPLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVREN--L 84 (219)
T ss_pred chhhhccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhc--C
Confidence 45668889999999999999999999999999986555566677788888888888777766544 45555555544 5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
+++||+.++|+.|+++|++++|+||++...++.++ .+|++.++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFA 129 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEe
Confidence 79999999999999999999999999999999999 999987664
No 4
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.7e-16 Score=132.63 Aligned_cols=121 Identities=37% Similarity=0.540 Sum_probs=109.1
Q ss_pred ccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC-CHHHHHHHHHhCCCCCCC
Q 028799 80 WRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRLSP 158 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~l~~~~~~~~~~l~P 158 (203)
.++.++++|||||||++.+.++.++...|.......++.+.+.|.+++.+.+..++..+++ +.+.++++.++. .+++|
T Consensus 2 ~~~~~L~vFD~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~-~~l~~ 80 (212)
T COG0560 2 RRMKKLAVFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEF-LRLTP 80 (212)
T ss_pred CCccceEEEecccchhhHHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhc-CcCCc
Confidence 3567899999999999988999999999998888889999999999999999999998888 777888888774 68999
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEe
Q 028799 159 GIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQI 201 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~i 201 (203)
|+.+++++|+++|++++|+|+|+...++++. .+|++.......
T Consensus 81 ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l 124 (212)
T COG0560 81 GAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANEL 124 (212)
T ss_pred cHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEE
Confidence 9999999999999999999999999999999 999998766543
No 5
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.70 E-value=5.3e-16 Score=125.68 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=89.3
Q ss_pred cCCcEEEEECCCcccccch-HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC-----CHHHHHHHHHhCCC
Q 028799 81 RTADAVCFDVDSTVCVDEG-IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-----SLSQVQDFLEKRPP 154 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~-----~~e~l~~~~~~~~~ 154 (203)
+|+++|+|||||||+|++. +..+...+|...........+..|..++.+.+......+.+ ..+++.+++++ .
T Consensus 2 ~~~k~viFD~DGTLid~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 79 (201)
T TIGR01491 2 RMIKLIIFDLDGTLTDVMSSWEYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRSGRLRREEVEEIFKE--I 79 (201)
T ss_pred CcceEEEEeCCCCCcCCccHHHHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcccCCCHHHHHHHHHh--C
Confidence 4789999999999999765 56666678865333333345666888888776544333211 34456666654 5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEe
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQI 201 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~i 201 (203)
+++||+.++|+.|+++|++++|+||++...+++++ .+|+..++...+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 127 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNEL 127 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEE
Confidence 89999999999999999999999999999999999 999987655433
No 6
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.67 E-value=6.6e-16 Score=136.46 Aligned_cols=116 Identities=39% Similarity=0.516 Sum_probs=100.4
Q ss_pred ccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCH-HHHHHHHHhCCCCCCC
Q 028799 80 WRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSL-SQVQDFLEKRPPRLSP 158 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~-e~l~~~~~~~~~~l~P 158 (203)
++++++++|||||||+..+.++++++.+|.+.....++.+++.|.+++.+.+.+++..+++.. +.++.+.+. .+++|
T Consensus 107 ~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~--l~l~p 184 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVREN--LPLMP 184 (322)
T ss_pred ccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHh--CCCCh
Confidence 567899999999999999999999999999888788889999999999999988888776643 334444333 68999
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 159 GIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
|+.+++++|++.|++++|+||++..+++.++ ++|++..+
T Consensus 185 Ga~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~ 224 (322)
T PRK11133 185 GLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAV 224 (322)
T ss_pred hHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999 99997643
No 7
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=9e-16 Score=130.23 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=93.8
Q ss_pred CCCCCChHHHHhhccCCcEEEEECCCcccccch-----HHHHHHHcCCC----ccHHHHHHHHhCCCCCHHHHHHHHHhc
Q 028799 67 SENTLPSKEVLQLWRTADAVCFDVDSTVCVDEG-----IDELAEFCGAG----KAVAEWTARAMGGSVPFEEALAARLSL 137 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~----~~~~~~~~~~~gG~~~~~e~l~~~~~~ 137 (203)
.+|+..||.-+.-..++++|+|||||||+|++. |...++.+|.+ ...........| .+..+.+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G--~~~~~~~~~~~~~ 83 (248)
T PLN02770 6 GENSVESKSSLSGLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAG--KHNEDIALGLFPD 83 (248)
T ss_pred CcccccccccccccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCC--CCHHHHHHHHcCc
Confidence 467888887788888899999999999999975 45566677542 222222333344 3555554433221
Q ss_pred cCCC----HHHHHHHHHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 138 FKPS----LSQVQDFLEK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 138 ~~~~----~e~l~~~~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.... ...+.+++.+ ....++||+.++|++|+++|++++|+||+.+..++..+ ++|+..++..++++
T Consensus 84 ~~~~~~~~~~~~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~ 157 (248)
T PLN02770 84 DLERGLKFTDDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIG 157 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEec
Confidence 0000 1112223321 24789999999999999999999999999999999999 99999988877764
No 8
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.65 E-value=2.4e-15 Score=125.12 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=92.4
Q ss_pred CcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC-HHHHHHHHHhCCCCCCCcHH
Q 028799 83 ADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQVQDFLEKRPPRLSPGID 161 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~-~e~l~~~~~~~~~~l~PG~~ 161 (203)
-++++|||||||++++....+++.++. ....++..+++.|.+++.+.+..++..+... .+++.+++.+. .+++||+.
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~pG~~ 80 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLET-AEIREGFH 80 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhC-CCcCcCHH
Confidence 348999999999999997777777764 3446777888999999999999999887653 46677776653 78999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
++|++|+++|++++|+||+++..+++++ ++ +..
T Consensus 81 e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~ 114 (219)
T PRK09552 81 EFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK 114 (219)
T ss_pred HHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc
Confidence 9999999999999999999999999999 77 643
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.64 E-value=3e-15 Score=128.46 Aligned_cols=123 Identities=21% Similarity=0.211 Sum_probs=88.0
Q ss_pred hhccCCcEEEEECCCcccccc-h-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHH---HH---
Q 028799 78 QLWRTADAVCFDVDSTVCVDE-G-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLS---QV--- 145 (203)
Q Consensus 78 ~~~~~~kaVIFD~DGTLiDse-~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e---~l--- 145 (203)
.+-+.+++|||||||||+||+ . |..+++.+|+.....+....++| .+..+.+...+.. ..+.+ ++
T Consensus 19 ~~~~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G--~~~~~~~~~l~~~-~~~~~~~~~l~~~ 95 (260)
T PLN03243 19 RLGCGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEG--MKNEQAISEVLCW-SRDFLQMKRLAIR 95 (260)
T ss_pred HhcCCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcC--CCHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence 345678999999999999995 3 34566778887554455555666 5555555443321 11111 11
Q ss_pred -HHHHH---hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 146 -QDFLE---KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 146 -~~~~~---~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
..++. .....++||+.++|+.|+++|++++|+||+.+..++.++ ++|+..++..++++
T Consensus 96 ~~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~ 158 (260)
T PLN03243 96 KEDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAA 158 (260)
T ss_pred HHHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEec
Confidence 12221 224679999999999999999999999999999999999 99999888887764
No 10
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.64 E-value=5.8e-15 Score=117.49 Aligned_cols=113 Identities=34% Similarity=0.516 Sum_probs=92.5
Q ss_pred EEEEECCCcccccch-HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC-HHHHHH-HHHhCCCCCCCcHH
Q 028799 85 AVCFDVDSTVCVDEG-IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQVQD-FLEKRPPRLSPGID 161 (203)
Q Consensus 85 aVIFD~DGTLiDse~-~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~-~e~l~~-~~~~~~~~l~PG~~ 161 (203)
+++|||||||++.++ +..+....|......++...++.|.+++.+.+..++..+.+. .+++.+ ++.+. ++++||+.
T Consensus 1 l~~fD~DgTl~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 79 (177)
T TIGR01488 1 LAIFDFDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALLHRSRSEEVAKEFLARQ-VALRPGAR 79 (177)
T ss_pred CEEecCccccccchhhHHHHHHHhCChHHHHHHHHHHHCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHhc-CCcCcCHH
Confidence 379999999999998 555555666544556788888999999999998888777663 355555 66653 67899999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
++++.++++|++++|+|+++...+++++ ++|++.++.
T Consensus 80 ~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~ 117 (177)
T TIGR01488 80 ELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFA 117 (177)
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchhee
Confidence 9999999999999999999999999999 999986543
No 11
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.62 E-value=4.9e-15 Score=124.13 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=83.0
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCC-CHHHHHHHHHhccCC-CHHHHHH----HH-
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSV-PFEEALAARLSLFKP-SLSQVQD----FL- 149 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~-~~~e~l~~~~~~~~~-~~e~l~~----~~- 149 (203)
+++++||||||||+||+. |..+++.+|+......... ..++.. ...+.+........+ ......+ ..
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRE-LHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEA 79 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHH-HHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 478999999999999986 5566778898755433333 344322 122222222221111 1111111 11
Q ss_pred H-hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 150 E-KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 150 ~-~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
. ....+++||+.++|+.|+++|++++++||+++..++.++ .+|+.+++...||+
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~ 135 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTA 135 (221)
T ss_pred hhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccH
Confidence 1 124789999999999999999999999999999999999 99999998887764
No 12
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.62 E-value=1.1e-14 Score=120.21 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=83.4
Q ss_pred CcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCH---HHH----HHHHH
Q 028799 83 ADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSL---SQV----QDFLE 150 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~---e~l----~~~~~ 150 (203)
+++|+|||||||+|+.. +..+++.+|.+....+....+.+ .+..+.+...+.....+. +++ .+.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMG--QSKIEAIRALLALDGADEAEAQAAFADFEERLA 78 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcC--CCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999975 44556678876543333332454 455665555443211121 111 12221
Q ss_pred ----hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC--ccceEEecC
Q 028799 151 ----KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD--VLKVIQITS 203 (203)
Q Consensus 151 ----~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~--~~~~i~it~ 203 (203)
....+++||+.++|++|+++|++++|+||++...++.++ .+|+. .++...+++
T Consensus 79 ~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~ 138 (220)
T TIGR03351 79 EAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCP 138 (220)
T ss_pred HHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcC
Confidence 123689999999999999999999999999999999999 99998 888777764
No 13
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.60 E-value=1.1e-14 Score=120.13 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=80.4
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH----HHHHHHh-
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQ----VQDFLEK- 151 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~----l~~~~~~- 151 (203)
++++|+|||||||+|++. +..+++.+|......+......| .+..+.+... . ....+. +.+++.+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 76 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIG--PSLHDTFSKI-D--ESKVEEMITTYREFNHEH 76 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--cCHHHHHHhc-C--HHHHHHHHHHHHHHHHHh
Confidence 578999999999999975 34455666653222233344454 4555544321 1 111222 2222221
Q ss_pred --CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 152 --RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 152 --~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
....++||+.++|++|+++|++++|+||++...++..+ .+|+..++..++++
T Consensus 77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~ 131 (214)
T PRK13288 77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITL 131 (214)
T ss_pred hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEec
Confidence 13679999999999999999999999999999999999 99999988777653
No 14
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.59 E-value=1.7e-14 Score=120.93 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=82.0
Q ss_pred ccCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC-CHHH----HHHHH
Q 028799 80 WRTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ----VQDFL 149 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~----l~~~~ 149 (203)
-.++++|||||||||+||.. +..+.+.+|.+....+.....+| .+....+......... ..++ +.+.+
T Consensus 9 ~~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (229)
T PRK13226 9 VRFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVS--KGARAMLAVAFPELDAAARDALIPEFLQRY 86 (229)
T ss_pred cccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhh--hHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 35679999999999999975 44566678875332333444444 3444444332221111 1111 22233
Q ss_pred Hh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 150 EK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 150 ~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
.+ ...+++||+.++|++|+++|++++|+||+....++.++ ++|+..++..+++
T Consensus 87 ~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~ 143 (229)
T PRK13226 87 EALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIG 143 (229)
T ss_pred HHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEe
Confidence 21 13689999999999999999999999999999998888 9999887776665
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.59 E-value=2.5e-14 Score=128.80 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=87.3
Q ss_pred cCCcEEEEECCCcccccch------HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC--CHHH----HHHH
Q 028799 81 RTADAVCFDVDSTVCVDEG------IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP--SLSQ----VQDF 148 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~------~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~--~~e~----l~~~ 148 (203)
+..++|||||||||+|++. |..+++.+|......+.....+| .+..+.+...+..... ..++ +.++
T Consensus 129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G--~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~ 206 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEG--MKNEQAISEVLCWSRDPAELRRMATRKEEI 206 (381)
T ss_pred CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC--CCHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 3478999999999999874 33456678886554445556666 5666666554332111 1111 2233
Q ss_pred HHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 149 LEK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 149 ~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
+.+ ....++||+.++|+.|+++|++++|+||+.+..++.++ ++||..++..++++
T Consensus 207 y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~s 265 (381)
T PLN02575 207 YQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAA 265 (381)
T ss_pred HHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEec
Confidence 322 23679999999999999999999999999999999999 99999988887764
No 16
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.58 E-value=1.7e-14 Score=124.64 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=82.4
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHH----HHHHHHHh-
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLS----QVQDFLEK- 151 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e----~l~~~~~~- 151 (203)
.+++++|||||||+||+. +..+++.+|......+...+.++ .+..+.+.. +.......+ .+.+++..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g--~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQ--WSSRTIVRR-AGLSPWQQARLLQRVQRQLGDC 137 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhC--ccHHHHHHH-cCCCHHHHHHHHHHHHHHHHhh
Confidence 477999999999999974 45566778876443444555555 344444332 221100111 12222222
Q ss_pred -CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 152 -RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 152 -~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
...+++||+.++|++|+++|++++|+||+.+..++.++ ++|+..++..+++
T Consensus 138 ~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~ 190 (273)
T PRK13225 138 LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQA 190 (273)
T ss_pred cccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEe
Confidence 13688999999999999999999999999999999999 9999888877665
No 17
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.58 E-value=4.6e-14 Score=113.01 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=87.0
Q ss_pred EEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCC--CCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcHHH
Q 028799 85 AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGG--SVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDE 162 (203)
Q Consensus 85 aVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG--~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~~e 162 (203)
+++|||||||+|.+.+..+++.++.. ...++...+..+ ..++.+.+...+.....+.+++.+++.. .+++||+.+
T Consensus 3 ~iiFD~dgTL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~ 79 (188)
T TIGR01489 3 VVVSDFDGTITLNDSDDWITDKFGPP-EANRLLDGVLSKTLSIKFMDRRMKGLLPSGLKEDEILEVLKS--APIDPGFKE 79 (188)
T ss_pred EEEEeCCCcccCCCchHHHHHhcCcc-hhhHHHHHHhhcCCchHHHHHHHHHHhhcCCCHHHHHHHHHh--CCCCccHHH
Confidence 68999999999999988888888733 334444444442 3455555554443332255667776655 589999999
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 163 LVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 163 lL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+++.|+++|++++|+||+....++.++ ++|+..++..+++
T Consensus 80 ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~ 120 (188)
T TIGR01489 80 FIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYS 120 (188)
T ss_pred HHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEec
Confidence 999999999999999999999999999 9999887766654
No 18
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=118.98 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=84.8
Q ss_pred cCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC-----HHHH----H
Q 028799 81 RTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-----LSQV----Q 146 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~-----~e~l----~ 146 (203)
+++++|+||+||||+|+.. +...++.+|.+....+.....+| ....+.+.+........ .+.+ .
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIG--LGLDELIERLLGEADEEAAAELVERLREEFL 79 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhc--CCHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 5688999999999999975 34566788887433444555565 34444444433221100 1111 1
Q ss_pred HHHHhCC-CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 147 DFLEKRP-PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 147 ~~~~~~~-~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+.+.+.. ..++||+.++|++|+++|++++|+||++...++.++ ++|+..++..+++
T Consensus 80 ~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g 137 (220)
T COG0546 80 TAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVG 137 (220)
T ss_pred HHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEc
Confidence 2222221 479999999999999999999999999999999999 9999998887765
No 19
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.56 E-value=6.1e-14 Score=114.89 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=78.0
Q ss_pred EEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC--CHH---H----HHHHHHh
Q 028799 86 VCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP--SLS---Q----VQDFLEK 151 (203)
Q Consensus 86 VIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~--~~e---~----l~~~~~~ 151 (203)
|||||||||+|++. +....+.+|......+.....++ .+..+.+...+..... +.+ + +.+++.+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIG--NGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEE 78 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhc--ccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHH
Confidence 68999999999875 33455667775322333444454 3444444443332211 211 1 2222322
Q ss_pred ---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 152 ---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 152 ---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
....++||+.++|+.|+++|++++|+||+.+..++.++ ++|+..++...+++
T Consensus 79 ~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 134 (213)
T TIGR01449 79 VAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGG 134 (213)
T ss_pred hccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEec
Confidence 13689999999999999999999999999999999999 99998887766653
No 20
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.55 E-value=9.6e-14 Score=111.18 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=77.7
Q ss_pred CcEEEEECCCcccccchH-----HHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--CCHHHH-------HHH
Q 028799 83 ADAVCFDVDSTVCVDEGI-----DELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--PSLSQV-------QDF 148 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~-----~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~~~e~l-------~~~ 148 (203)
+++|+|||||||+|++.. ..+++.+|.+.. .++....++ .+..+.+...+.... .+.+++ .++
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFD-KQYNTSLGG--LSREDILRAILKLRKPGLSLETIHQLAERKNEL 77 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCC-HHHHHHcCC--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999863 345567787533 333343343 455555544433221 122221 122
Q ss_pred HH----hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 149 LE----KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 149 ~~----~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+. ..+..++||+.++|+.|+++|++++|+||+ ..++.++ .+|+..++..+++
T Consensus 78 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~ 134 (185)
T TIGR02009 78 YRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVD 134 (185)
T ss_pred HHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeee
Confidence 22 224689999999999999999999999998 5678888 9999887776654
No 21
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.55 E-value=1.9e-13 Score=113.44 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhc--cCC-CHHH-HH---HHH
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSL--FKP-SLSQ-VQ---DFL 149 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~--~~~-~~e~-l~---~~~ 149 (203)
++++|+|||||||+|++. +..+++.+|......+.....++ ....+........ +.+ ..++ .. +.+
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLG--LRIDQVVDLWYARQPWNGPSRQEVVQRIIARV 83 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhC--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 578999999999999975 33455677876443344455555 3333333222111 111 2211 11 111
Q ss_pred Hh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 150 EK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 150 ~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+ ....++||+.++|+.|+++|++++|+||+....++.++ .+|+..++..++++
T Consensus 84 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 141 (222)
T PRK10826 84 ISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASA 141 (222)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEc
Confidence 11 13689999999999999999999999999999999999 99999888877764
No 22
>PRK11587 putative phosphatase; Provisional
Probab=99.55 E-value=8.6e-14 Score=115.46 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=74.3
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC--HHHHHHH--HH--
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS--LSQVQDF--LE-- 150 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~--~e~l~~~--~~-- 150 (203)
++++|+|||||||+|++. +..+++.+|.+. .+......| .+..+.++......... .+.+.++ +.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~--~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP--DEVLNFIHG--KQAITSLRHFMAGASEAEIQAEFTRLEQIEAT 77 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH--HHHHHHHcC--CCHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 578999999999999975 455667888763 233333334 34444444322211111 1122211 11
Q ss_pred -hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 151 -KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 151 -~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
.....++||+.++|+.|+++|++++|+||+....+...+ ..|+..+.
T Consensus 78 ~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~ 126 (218)
T PRK11587 78 DTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPE 126 (218)
T ss_pred hhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCcc
Confidence 124689999999999999999999999999988877777 88886543
No 23
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.54 E-value=1.1e-13 Score=114.83 Aligned_cols=107 Identities=16% Similarity=0.287 Sum_probs=89.6
Q ss_pred EEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC-HHHHHHHHHhCCCCCCCcHHHHH
Q 028799 86 VCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQVQDFLEKRPPRLSPGIDELV 164 (203)
Q Consensus 86 VIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~-~e~l~~~~~~~~~~l~PG~~elL 164 (203)
++|||||||++.+++..+++.++. +...++..+++.|.+++.+.+..++..++.+ .+++.+++.+ ..+++||+.+++
T Consensus 2 ~~fDFDgTit~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~l~pg~~e~l 79 (214)
T TIGR03333 2 IICDFDGTITNNDNIISIMKQFAP-PEWEALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEITSFVLE-TAEIREGFREFV 79 (214)
T ss_pred EEeccCCCCCcchhHHHHHHHhCc-HHHHHHHHHHHcCCccHHHHHHHHHhhCCCchHHHHHHHHHh-cCcccccHHHHH
Confidence 799999999999998888877754 3445677788888899999998888877654 4577776655 379999999999
Q ss_pred HHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 165 KKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 165 ~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
++|+++|++++|+|++.+.++++++ .++..
T Consensus 80 ~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~ 110 (214)
T TIGR03333 80 AFINEHGIPFYVISGGMDFFVYPLLEGIVEK 110 (214)
T ss_pred HHHHHCCCeEEEECCCcHHHHHHHHHhhCCc
Confidence 9999999999999999999999998 76543
No 24
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.53 E-value=1.5e-13 Score=116.32 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=75.8
Q ss_pred CcEEEEECCCcccccch------HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHH-------------HHhccCCCHH
Q 028799 83 ADAVCFDVDSTVCVDEG------IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAA-------------RLSLFKPSLS 143 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~------~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~-------------~~~~~~~~~e 143 (203)
+++|+|||||||+|++. +...++.+|.+....+ ..+.+| .+..+.+.. .++. ..+.+
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~-~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEE-ARGPMG--LGKWDHIRALLKMPAVAERWRAKFGR-LPTEA 77 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHH-HHHhcC--ccHHHHHHHHhcCHHHHHHHHHHhCC-CCCHH
Confidence 68999999999999853 2344556786543333 333344 222222211 1111 11222
Q ss_pred HH-------HHHHH---hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc-eEEecC
Q 028799 144 QV-------QDFLE---KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK-VIQITS 203 (203)
Q Consensus 144 ~l-------~~~~~---~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~-~i~it~ 203 (203)
++ .+++. .....++||+.++|+.|+++|++++|+||+++..++.++ .+|+..++ ..++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~ 149 (253)
T TIGR01422 78 DIEAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTT 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEcc
Confidence 21 11111 124689999999999999999999999999999999999 99998774 666654
No 25
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.52 E-value=4.4e-13 Score=110.59 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=81.7
Q ss_pred cCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhcc-CC-CHHH-------HH
Q 028799 81 RTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLF-KP-SLSQ-------VQ 146 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~-~~-~~e~-------l~ 146 (203)
.++++++||+||||+|+.. +..+++.+|.+..........++ ....+.+...+... .. +.++ +.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVG--NGADVLVERALTWAGREPDEELLEKLRELFD 81 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhC--ccHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 4688999999999999964 44556677875332333444444 33444444433221 01 2222 22
Q ss_pred HHHHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 147 DFLEK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 147 ~~~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+++.. ....++||+.++++.|++.|++++|+||+....++.++ .+|+..++..+++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~ 141 (226)
T PRK13222 82 RHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIG 141 (226)
T ss_pred HHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEc
Confidence 23332 13689999999999999999999999999999999999 9999887766654
No 26
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.51 E-value=4e-13 Score=114.88 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=76.1
Q ss_pred cCCcEEEEECCCcccccch------HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHH-------------HHHhccCCC
Q 028799 81 RTADAVCFDVDSTVCVDEG------IDELAEFCGAGKAVAEWTARAMGGSVPFEEALA-------------ARLSLFKPS 141 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~------~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~-------------~~~~~~~~~ 141 (203)
+++++|||||||||+|++. +..+++.+|.+... +...+.+| .+..+.+. ..++. ..+
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~-~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 77 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITL-EEARGPMG--LGKWDHIRALLKMPRVAARWQAVFGR-LPT 77 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCH-HHHHHhcC--CCHHHHHHHHHhcHHHHHHHHHHhCC-CCC
Confidence 4679999999999999853 23445567875432 22334444 22222211 11111 012
Q ss_pred HHHHH-------HHHH---hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc-eEEecC
Q 028799 142 LSQVQ-------DFLE---KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK-VIQITS 203 (203)
Q Consensus 142 ~e~l~-------~~~~---~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~-~i~it~ 203 (203)
.+++. +++. .....++||+.++|+.|+++|++++|+||+++..++.++ .+|+..++ ..++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~ 151 (267)
T PRK13478 78 EADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTT 151 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcC
Confidence 22221 1221 123689999999999999999999999999999999888 88887653 565553
No 27
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.51 E-value=2.3e-13 Score=112.96 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=87.8
Q ss_pred cEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--C-CHHHHHHHHHhCCCCCCCcH
Q 028799 84 DAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSPGI 160 (203)
Q Consensus 84 kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~-~~e~l~~~~~~~~~~l~PG~ 160 (203)
..++|||||||++. .|.+++...|.... .. +.++...+.+.++.++..++ | +.++++++++. ++++||+
T Consensus 2 ~la~FDlD~TLi~~-~w~~~~~~~g~~~~--~~---~~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~~--i~l~pga 73 (203)
T TIGR02137 2 EIACLDLEGVLVPE-IWIAFAEKTGIDAL--KA---TTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIAT--LKPLEGA 73 (203)
T ss_pred eEEEEeCCcccHHH-HHHHHHHHcCCcHH--HH---HhcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHh--CCCCccH
Confidence 46999999999975 69999999996432 22 34566789999988887763 5 67888888765 5899999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
.++|+.|++.| +++|+||+++..+++++ .+|++.++.
T Consensus 74 ~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~a 111 (203)
T TIGR02137 74 VEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLC 111 (203)
T ss_pred HHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhc
Confidence 99999999975 99999999999999999 999987665
No 28
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.50 E-value=3.8e-13 Score=108.29 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=79.3
Q ss_pred ccCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC-C-CHHHHHH----H
Q 028799 80 WRTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK-P-SLSQVQD----F 148 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~-~-~~e~l~~----~ 148 (203)
+.++++|+|||||||+||+. +..+.+.+|.+.. .+.....+| .+..+.+........ . ..+++.. +
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFD-EQAMVALNG--SPTWRIAQAIIELNQADLDPHALAREKTEA 78 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCC-HHHHHHhcC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45678999999999999975 4455567887643 233444444 333343333322111 1 2222221 2
Q ss_pred HH---hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 149 LE---KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 149 ~~---~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
+. .....++|| .++|+.|+++ ++++|+||++...++..+ ++|+..++..++|+
T Consensus 79 ~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~ 135 (188)
T PRK10725 79 VKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAA 135 (188)
T ss_pred HHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEeh
Confidence 22 123578886 5899999875 899999999999999999 99999988887764
No 29
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.50 E-value=2.3e-13 Score=117.24 Aligned_cols=120 Identities=19% Similarity=0.128 Sum_probs=81.7
Q ss_pred cCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhc-c--CC-CH---HHH---
Q 028799 81 RTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSL-F--KP-SL---SQV--- 145 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~-~--~~-~~---e~l--- 145 (203)
+++++|+|||||||+|++. +..+++.+|......+....+.+ .+..+.+...+.. . .+ +. +++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVG--NGAPVLVRRALAGSIDHDGVDDELAEQALAL 88 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhC--hhHHHHHHHHhcccccccCCCHHHHHHHHHH
Confidence 5678999999999999965 45666778876433333344555 3334444333221 1 01 11 122
Q ss_pred -HHHHHh--CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 146 -QDFLEK--RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 146 -~~~~~~--~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
.+.+.. ....++||+.++|+.|+++|++++|+||++...++.++ .+|+..++..+++
T Consensus 89 ~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~ 149 (272)
T PRK13223 89 FMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIG 149 (272)
T ss_pred HHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEe
Confidence 222322 12578999999999999999999999999999999999 9999887776655
No 30
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.50 E-value=2.7e-13 Score=110.72 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=84.2
Q ss_pred CcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--C-CHHHHHHHHHhCCCCCCCc
Q 028799 83 ADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSPG 159 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~-~~e~l~~~~~~~~~~l~PG 159 (203)
+++|+|||||||++ +.|..+++.+|.+.. . .+..+...+.+.+..++..+. + +.+++..+++. .+++||
T Consensus 1 ~~~v~FD~DGTL~~-~~~~~~~~~~g~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~--~~~~pg 72 (205)
T PRK13582 1 MEIVCLDLEGVLVP-EIWIAFAEKTGIPEL-R----ATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVIAT--LDPLPG 72 (205)
T ss_pred CeEEEEeCCCCChh-hHHHHHHHHcCChHH-H----HHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHh--CCCCCC
Confidence 57899999999996 578788889997542 1 123445677777777666543 2 56667777665 579999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
+.++|+.|+++ ++++|+||+++..++.++ ++|++.++.
T Consensus 73 ~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~ 111 (205)
T PRK13582 73 AVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFC 111 (205)
T ss_pred HHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhc
Confidence 99999999999 999999999999999999 999986553
No 31
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.50 E-value=2.5e-13 Score=113.80 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=74.3
Q ss_pred hccCCcEEEEECCCcccccc----hHHH-----HHHHcCCCccHHHHHHHHh------CCCCCH--HHHHHHHHhccCCC
Q 028799 79 LWRTADAVCFDVDSTVCVDE----GIDE-----LAEFCGAGKAVAEWTARAM------GGSVPF--EEALAARLSLFKPS 141 (203)
Q Consensus 79 ~~~~~kaVIFD~DGTLiDse----~~~~-----la~~~G~~~~~~~~~~~~~------gG~~~~--~e~l~~~~~~~~~~ 141 (203)
.|..+++|||||||||+|+. .|.. +++.+|.+.. +....+. ++..+. .+.+.+..+ ..
T Consensus 6 ~~~~~k~vIFDlDGTL~d~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 80 (224)
T PRK14988 6 AWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETLGAQRGISPQ--EAQEYIRQEYHAVQHTLNWYCLDYWSERLG---LD 80 (224)
T ss_pred CcccCCEEEEcCCCCccchhhhchHHHhhHHHHHHHHhCcCHH--HHHHHHHHHHHHHcCccceecHHHHHHHhC---CC
Confidence 58889999999999999963 1222 2245565421 2221111 100110 011111111 01
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 142 LSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 142 ~e~l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.......+. ....++||+.++|+.|+++|++++|+||+.+..++..+ ++|+..++..+++|
T Consensus 81 ~~~~~~~~~-~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s 142 (224)
T PRK14988 81 ICAMTTEQG-PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLST 142 (224)
T ss_pred HHHHHHHHh-ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEe
Confidence 111111111 23689999999999999999999999999999999888 99998877766654
No 32
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.50 E-value=1.6e-13 Score=126.18 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=80.5
Q ss_pred cCCcEEEEECCCcccccch-----HHHHHHHcCC-----CccHHHHHHHHhCCCCCHHHHHHHHHhccCC-CHHH----H
Q 028799 81 RTADAVCFDVDSTVCVDEG-----IDELAEFCGA-----GKAVAEWTARAMGGSVPFEEALAARLSLFKP-SLSQ----V 145 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-----~~~la~~~G~-----~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~----l 145 (203)
.|++++||||||||+||+. |....+.++. .....+...+.+| .+..+.+......... ..++ +
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMG--VPLPKVWEALLPDHSLEIREQTDAYF 316 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcC--CChHHHHHHHhhhcchhHHHHHHHHH
Confidence 4468999999999999986 3344445431 1111233445555 4555555443322111 1122 2
Q ss_pred HHHHH----hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 146 QDFLE----KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 146 ~~~~~----~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+.+. ....+++||+.++|++|+++|++++|+||+.+..++.++ ++|+..++..++++
T Consensus 317 ~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~ 379 (459)
T PRK06698 317 LERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSI 379 (459)
T ss_pred HHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEec
Confidence 22221 224689999999999999999999999999999999999 99998887776653
No 33
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.48 E-value=7.2e-13 Score=109.63 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=79.7
Q ss_pred CCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--CCHHHHHHHHH----
Q 028799 82 TADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--PSLSQVQDFLE---- 150 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~~~e~l~~~~~---- 150 (203)
++++++||+||||+|++. +...++.+|......+....+.+ .+..+.+........ .+.+++.+.+.
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKG--VKLYEIIDIISKEHGVTLAKAELEPVYRAEVA 80 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 578999999999999865 34556678876443444455444 555555544333222 13344333221
Q ss_pred ---hCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce-EEec
Q 028799 151 ---KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV-IQIT 202 (203)
Q Consensus 151 ---~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~-i~it 202 (203)
.....++||+.++|+.| +++++|+||+....++..+ .+|+..++. ++++
T Consensus 81 ~~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~ 134 (221)
T PRK10563 81 RLFDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFS 134 (221)
T ss_pred HHHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEee
Confidence 12478999999999998 4899999999999999999 999988774 5544
No 34
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.47 E-value=7e-13 Score=109.32 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
..++||+.++|+.|+++|++++|+||+....+...+ .+|+..++..++++
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~ 143 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITS 143 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEe
Confidence 689999999999999999999999999998888888 99998877766653
No 35
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.47 E-value=4.7e-13 Score=109.70 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=75.6
Q ss_pred EEEECCCcccccch-----HHHHHHH-cCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCC-HHHH-HHHHH-hCCCCC
Q 028799 86 VCFDVDSTVCVDEG-----IDELAEF-CGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPS-LSQV-QDFLE-KRPPRL 156 (203)
Q Consensus 86 VIFD~DGTLiDse~-----~~~la~~-~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~-~e~l-~~~~~-~~~~~l 156 (203)
++|||||||+||.. +....+. +|.+....+...+.++ .+..+.+.. ++. ... .+.+ ...++ ....++
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLG--RYFPDIMRI-MGL-PLEMEEPFVRESYRLAGEVEV 76 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhC--ccHHHHHHH-cCC-CHHHHHHHHHHHHHhhccccc
Confidence 68999999999975 3334444 4654322344455555 344444432 221 111 1111 12222 124789
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+||+.++|++|+++|++++|+||+....++..+ ++|+..++..+++
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~ 123 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIG 123 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEe
Confidence 999999999999999999999999999999999 9999887776665
No 36
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.47 E-value=9.7e-13 Score=105.35 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=75.0
Q ss_pred EEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC-C-CHHHH-------HHHHH
Q 028799 85 AVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK-P-SLSQV-------QDFLE 150 (203)
Q Consensus 85 aVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~-~-~~e~l-------~~~~~ 150 (203)
+++||+||||+|++. +..+++.+|.+.. .+......+ .+..+.+...+.... . +.+.+ .+.+.
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFD-EEFNESLKG--VSREDSLERILDLGGKKYSEEEKEELAERKNDYYV 77 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCC-HHHHHHhcC--CChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999985 4556677887643 233334443 444555544433221 1 22211 11222
Q ss_pred ----h-CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 151 ----K-RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 151 ----~-~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
. ....++||+.++|++|+++|++++|+||+.. ...++ .+|+..++...+++
T Consensus 78 ~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~ 134 (185)
T TIGR01990 78 ELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDP 134 (185)
T ss_pred HHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEeh
Confidence 1 1347899999999999999999999999754 35677 99998888777654
No 37
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.45 E-value=2e-12 Score=105.32 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=75.2
Q ss_pred CcEEEEECCCcccccchHHHH-HHHcCCC-ccH---------HHHHHHHhCCCC-CHHHHHHHH----HhccCC--CHHH
Q 028799 83 ADAVCFDVDSTVCVDEGIDEL-AEFCGAG-KAV---------AEWTARAMGGSV-PFEEALAAR----LSLFKP--SLSQ 144 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~~~l-a~~~G~~-~~~---------~~~~~~~~gG~~-~~~e~l~~~----~~~~~~--~~e~ 144 (203)
+++|+||+||||+|++..... .+.++.. ... .........|.. ++.+...+. +..+.. ..+.
T Consensus 1 ik~viFD~dgTLiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSVVERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDESA 80 (198)
T ss_pred CcEEEEeCCCcCccHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 478999999999999874332 2333221 000 011111223332 444332222 222211 2223
Q ss_pred HHHHHHh-CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 145 VQDFLEK-RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 145 l~~~~~~-~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
...+.+. ...+++||+.++|+.|+++|++++|+||++...++..+ .+|+..++..+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s 141 (198)
T TIGR01428 81 ADRLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSA 141 (198)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEeh
Confidence 3333321 13689999999999999999999999999999999999 99998877777664
No 38
>PLN02940 riboflavin kinase
Probab=99.45 E-value=1.2e-12 Score=118.02 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--CCHHH----HHHHH
Q 028799 81 RTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--PSLSQ----VQDFL 149 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~~~e~----l~~~~ 149 (203)
.++++|+|||||||+|++. +..+++.+|..... +.....+| .+..+.+...+.... ...++ +.+.+
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~-~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDG-REAQKIVG--KTPLEAAATVVEDYGLPCSTDEFNSEITPLL 85 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCH-HHHHHhcC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3488999999999999976 34556677875443 33445555 344444444333221 12222 22222
Q ss_pred Hh--CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH--HcCCCccceEEecC
Q 028799 150 EK--RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN--ILKWDVLKVIQITS 203 (203)
Q Consensus 150 ~~--~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll--~lGL~~~~~i~it~ 203 (203)
.+ ....++||+.++|+.|+++|++++|+||+++..++..+ ++|+..++..++++
T Consensus 86 ~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~ 143 (382)
T PLN02940 86 SEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGG 143 (382)
T ss_pred HHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEeh
Confidence 21 24689999999999999999999999999999888766 58998888877764
No 39
>PRK09449 dUMP phosphatase; Provisional
Probab=99.44 E-value=2e-12 Score=107.11 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCcEEEEECCCcccccch---HHHHHHHcCCCccHHHH----------HHHHhCCCCCHHHHHHHH----HhccCCCHHH
Q 028799 82 TADAVCFDVDSTVCVDEG---IDELAEFCGAGKAVAEW----------TARAMGGSVPFEEALAAR----LSLFKPSLSQ 144 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~---~~~la~~~G~~~~~~~~----------~~~~~gG~~~~~e~l~~~----~~~~~~~~e~ 144 (203)
++++|+|||||||+|.+. +..+++.+|........ +..+..|..+..+....+ ...+..+.++
T Consensus 2 ~~k~iiFDlDGTLid~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T PRK09449 2 KYDWILFDADETLFHFDAFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVTPGE 81 (224)
T ss_pred CccEEEEcCCCchhcchhhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 578999999999998553 33455667765321111 111112223333222111 1111112233
Q ss_pred HHHH----HHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 145 VQDF----LEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 145 l~~~----~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
+.+. +.. ...++||+.++|+.|+ +|++++|+||++...++..+ ++|+..++..+++|
T Consensus 82 ~~~~~~~~~~~-~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~ 143 (224)
T PRK09449 82 LNSAFLNAMAE-ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVIS 143 (224)
T ss_pred HHHHHHHHHhh-cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEE
Confidence 3222 222 3679999999999999 68999999999999999988 99998888777764
No 40
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.42 E-value=2.3e-12 Score=105.18 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=73.4
Q ss_pred cEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHH----H---------hC-C-CCCHHH----HHHHHHhccC
Q 028799 84 DAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTAR----A---------MG-G-SVPFEE----ALAARLSLFK 139 (203)
Q Consensus 84 kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~----~---------~g-G-~~~~~e----~l~~~~~~~~ 139 (203)
++|+|||||||+|++. +..+++.+|.+....+.... + .+ . ..+..+ .+...+....
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5899999999999864 44566678876432221111 1 00 0 133322 2222222211
Q ss_pred -CCH----HHHHHHHHh----CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 140 -PSL----SQVQDFLEK----RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 140 -~~~----e~l~~~~~~----~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
... +.+.++++. ....++||+.++|+.|+++|++++|+||+... ++..+ .+|+..++..+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s 153 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTS 153 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEee
Confidence 111 122333321 13478999999999999999999999999875 46777 99998877766654
No 41
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.41 E-value=2.4e-12 Score=105.05 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=73.9
Q ss_pred EEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhC-CCC--CH---HHHHHHHHhcc-------CCCHHHH-
Q 028799 85 AVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMG-GSV--PF---EEALAARLSLF-------KPSLSQV- 145 (203)
Q Consensus 85 aVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~g-G~~--~~---~e~l~~~~~~~-------~~~~e~l- 145 (203)
+|+|||||||+||+. +...++.+|......+...++++ |.. .+ ...+.+.+... ....+.+
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAVT 81 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHHH
Confidence 689999999999986 34555667643222333444443 111 11 11121222110 0122333
Q ss_pred ---HHHHHhC------------CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 146 ---QDFLEKR------------PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 146 ---~~~~~~~------------~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
++++... ...+.|++.++|+.|+++|++++|+||+++..++.++ .+|+..++...+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~ 155 (197)
T TIGR01548 82 AQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWM 155 (197)
T ss_pred HHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEee
Confidence 3333321 1245556699999999999999999999999999999 99999888777653
No 42
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=6e-12 Score=102.43 Aligned_cols=119 Identities=23% Similarity=0.417 Sum_probs=100.1
Q ss_pred CcEEEE-ECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcHH
Q 028799 83 ADAVCF-DVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGID 161 (203)
Q Consensus 83 ~kaVIF-D~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~~ 161 (203)
.+.++| |||||++-.+..+.+-..+|.++. .++...++.+.+++.+.+.++++..+.+.+++.+.+.+ .+.+.||++
T Consensus 2 kk~vi~sDFDGTITl~Ds~~~itdtf~~~e~-k~l~~~vls~tiS~rd~~g~mf~~i~~s~~Eile~llk-~i~Idp~fK 79 (220)
T COG4359 2 KKPVIFSDFDGTITLNDSNDYITDTFGPGEW-KALKDGVLSKTISFRDGFGRMFGSIHSSLEEILEFLLK-DIKIDPGFK 79 (220)
T ss_pred CceEEEecCCCceEecchhHHHHhccCchHH-HHHHHHHhhCceeHHHHHHHHHHhcCCCHHHHHHHHHh-hcccCccHH
Confidence 345665 999999999999999999998754 47888888999999999999998876677777777666 379999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH--HcCCCccceEEecC
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN--ILKWDVLKVIQITS 203 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll--~lGL~~~~~i~it~ 203 (203)
++++++++++++++|+|+|...++.+++ ..|-+....+.|.|
T Consensus 80 ef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 80 EFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 9999999999999999999999999998 45556666666654
No 43
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.38 E-value=9.2e-12 Score=102.41 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=77.2
Q ss_pred CcEEEEECCCcccccch-----HHHHHHHcCCCccHH----------HHHHHHhCCCCCHHHHHHH----HHhccCC--C
Q 028799 83 ADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVA----------EWTARAMGGSVPFEEALAA----RLSLFKP--S 141 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~----------~~~~~~~gG~~~~~e~l~~----~~~~~~~--~ 141 (203)
+++|+|||||||+|+.. +..+.+.+|...... .++..+..|..+..+.... .+..... .
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 57999999999999876 334445667642111 1122233344444332211 1211111 1
Q ss_pred HHHHHHHHHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 142 LSQVQDFLEK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 142 ~e~l~~~~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+.+.+.+.. ...+++||+.++|++|+++ ++++|+||++...++..+ .+|+..++..+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~ 145 (224)
T TIGR02254 81 EALLNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVS 145 (224)
T ss_pred HHHHHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEc
Confidence 2223332221 1368999999999999999 999999999999999999 99998888777654
No 44
>PRK11590 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-11 Score=102.04 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=67.9
Q ss_pred CCcEEEEECCCcccccchHH---HHH-HHcCCCccHHHHHHHHhCCCCCHHHHHHH-H-------HhccCC-CHHHHH--
Q 028799 82 TADAVCFDVDSTVCVDEGID---ELA-EFCGAGKAVAEWTARAMGGSVPFEEALAA-R-------LSLFKP-SLSQVQ-- 146 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~~~---~la-~~~G~~~~~~~~~~~~~gG~~~~~e~l~~-~-------~~~~~~-~~e~l~-- 146 (203)
..++++|||||||++.+... ..+ +++|............++ ......... . .....+ +.++++
T Consensus 5 ~~k~~iFD~DGTL~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig--~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNLLLVLPLLPVIG--LGLLVKGRAARWPMSLLLWGCTFGHSEARLQAL 82 (211)
T ss_pred cceEEEEecCCCCcccchHHHHHHHHHHhcchhhHHHhHHHHHhc--cCcccchhhhhhhHHHHHHHHHcCCCHHHHHHH
Confidence 45799999999999877533 333 566755332233333344 111111111 0 001112 333322
Q ss_pred --HH---HHhCCCCCCCcHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 147 --DF---LEKRPPRLSPGIDELV-KKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 147 --~~---~~~~~~~l~PG~~elL-~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
++ +.+. ..++||+.++| +.++++|++++||||+++..+++++ .+|+
T Consensus 83 ~~~f~~~~~~~-~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~ 135 (211)
T PRK11590 83 EADFVRWFRDN-VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPW 135 (211)
T ss_pred HHHHHHHHHHh-CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccc
Confidence 22 3332 57799999999 5788899999999999999999999 9885
No 45
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.33 E-value=1.7e-11 Score=104.04 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=88.4
Q ss_pred EEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccC--C-CHHHHHHHHHhCCCCCCCcHH
Q 028799 85 AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSPGID 161 (203)
Q Consensus 85 aVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~--~-~~e~l~~~~~~~~~~l~PG~~ 161 (203)
.++||||+||+|.++...+.+.++......++...+-.+ .+.+.+...+..+. + +.+++.+.++. +++.||+.
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~--~wt~~m~~vl~~L~~~gvt~~~I~~~l~~--ip~~pgm~ 77 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKG--GWTEYMDRVLQLLHEQGVTPEDIRDALRS--IPIDPGMK 77 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhcccc--chHHHHHHHHHHHHHcCCCHHHHHHHHHc--CCCCccHH
Confidence 589999999999999999999988664434444443322 34455555554442 3 68888888876 68999999
Q ss_pred HHHHHH--HHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 162 ELVKKL--KANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 162 elL~~L--k~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
++++.+ +..|+.++|+|++...+++.++ +.|+...+.-++|
T Consensus 78 ~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~T 121 (234)
T PF06888_consen 78 ELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFT 121 (234)
T ss_pred HHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEe
Confidence 999999 5579999999999999999999 9999887655544
No 46
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.31 E-value=3.9e-12 Score=99.21 Aligned_cols=115 Identities=26% Similarity=0.314 Sum_probs=76.3
Q ss_pred EEEECCCcccccch-----HHH-HHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH----HHHHHHhCCCC
Q 028799 86 VCFDVDSTVCVDEG-----IDE-LAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQ----VQDFLEKRPPR 155 (203)
Q Consensus 86 VIFD~DGTLiDse~-----~~~-la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~----l~~~~~~~~~~ 155 (203)
|+||+||||+|++. +.. +.+.+|.... .+...+..+ .+..+.+...+......... +.++......+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEIS-AEELRELFG--KSYEEALERLLERFGIDPEEIQELFREYNLESKLQ 77 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHH-HHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGEE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHhC--CCHHHHHHHhhhccchhHHHHHHHhhhhhhhhccc
Confidence 79999999999876 222 3445665422 222333333 45555555444322111222 22332123478
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
++||+.++|+.|+++|++++++||++...++..+ .+|+..++.-+++|
T Consensus 78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~ 126 (176)
T PF13419_consen 78 PYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISS 126 (176)
T ss_dssp ESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEG
T ss_pred hhhhhhhhhhhcccccceeEEeecCCccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999 99998777665543
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=2.2e-11 Score=122.09 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=82.4
Q ss_pred hhccCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhcc--CC-CHH----HH
Q 028799 78 QLWRTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLF--KP-SLS----QV 145 (203)
Q Consensus 78 ~~~~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~--~~-~~e----~l 145 (203)
..|+.+++|+|||||||+|++. +..+++.+|.+... +.....++ .+..+.+....... .+ +.+ ++
T Consensus 70 ~~~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~-e~~~~~~G--~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (1057)
T PLN02919 70 EEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-EDFVPFMG--TGEANFLGGVASVKGVKGFDPDAAKKRF 146 (1057)
T ss_pred CcCCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCH-HHHHHHhC--CCHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4588899999999999999976 34555678876433 33344555 44444443322211 11 211 12
Q ss_pred HHHHH-h----CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC-ccceEEec
Q 028799 146 QDFLE-K----RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD-VLKVIQIT 202 (203)
Q Consensus 146 ~~~~~-~----~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~-~~~~i~it 202 (203)
.+.+. . ....++||+.++|++|+++|++++|+||+....++..+ ++|+. .++..+++
T Consensus 147 ~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~ 210 (1057)
T PLN02919 147 FEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVS 210 (1057)
T ss_pred HHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEE
Confidence 22221 1 12347999999999999999999999999999999999 99996 56666654
No 48
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.29 E-value=1.1e-11 Score=101.77 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHH-HcCCCccceEEecC
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHM--INILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~--i~~ll-~lGL~~~~~i~it~ 203 (203)
..+++||+.++|+.|+++|++++|+||++... ....+ .+++..++..+++|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s 145 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVES 145 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEe
Confidence 46899999999999999999999999997653 22233 56776666555543
No 49
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=3.5e-11 Score=104.55 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
++++||+.++|+.|+++|++++|+||++...+..++ .++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~ 182 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL 182 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999998887 653
No 50
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.27 E-value=3.6e-11 Score=98.40 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=74.9
Q ss_pred cEEEEECCCcccccchHHHHHH---HcCCCcc-H------HHHHHHHhCCCCCHHHHHHHHHhccCC--CHHHHHHHHHh
Q 028799 84 DAVCFDVDSTVCVDEGIDELAE---FCGAGKA-V------AEWTARAMGGSVPFEEALAARLSLFKP--SLSQVQDFLEK 151 (203)
Q Consensus 84 kaVIFD~DGTLiDse~~~~la~---~~G~~~~-~------~~~~~~~~gG~~~~~e~l~~~~~~~~~--~~e~l~~~~~~ 151 (203)
.+|+||+||||+|.+....++. ..+.... . ...+.+...|.++..+........... +.+++.+.+.+
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGWQA 80 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3799999999999865333221 2232210 0 012334444556666554443332211 33444444433
Q ss_pred CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-H-cCCCccceEEecC
Q 028799 152 RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-I-LKWDVLKVIQITS 203 (203)
Q Consensus 152 ~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~-lGL~~~~~i~it~ 203 (203)
....++||+.++|+.|+++|++++|+||++...++.++ . .++..++..+++|
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s 134 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLS 134 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEe
Confidence 22468999999999999999999999999988877665 4 4777666666554
No 51
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.26 E-value=4.9e-11 Score=101.40 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=75.0
Q ss_pred CCCCCh-HHHHhhc-cCCc-EEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH
Q 028799 68 ENTLPS-KEVLQLW-RTAD-AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQ 144 (203)
Q Consensus 68 ~~~~~~-~~~~~~~-~~~k-aVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~ 144 (203)
+..|.| +++-+-+ .+.+ +|+||+||||+|+.... .+|......+-.....+ ..+ .+.
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~----~~G~~~~s~~~~~~l~g--~~~--------------w~~ 104 (237)
T TIGR01672 45 PIHWISVAQIENSLEGRPPIAVSFDIDDTVLFSSPGF----WRGKKTFSPGSEDYLKN--QVF--------------WEK 104 (237)
T ss_pred CeeEEEHHHHHHhcCCCCCeEEEEeCCCccccCcHHH----hCCcccCCHHHhhhhcC--hHH--------------HHH
Confidence 467777 4444333 3434 99999999999987644 25554321111111111 011 122
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHH-HcCCCccceEEec
Q 028799 145 VQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGG----FRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 145 l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~----~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+.+.... ...++|++.++|++|+++|+++++|||+ ....++.++ ++|++.++...++
T Consensus 105 ~~~~~~~-~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~ 166 (237)
T TIGR01672 105 VNNGWDE-FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFA 166 (237)
T ss_pred HHHhccc-CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEEC
Confidence 2222222 3567888999999999999999999998 777888999 9999988777665
No 52
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.25 E-value=4e-11 Score=96.65 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=70.9
Q ss_pred cEEEEECCCcccccch-----HHHH-----HHHcCCCccHH-HHHHH---HhCCCCCHHHHHHHHHhccCCCHHHHHHHH
Q 028799 84 DAVCFDVDSTVCVDEG-----IDEL-----AEFCGAGKAVA-EWTAR---AMGGSVPFEEALAARLSLFKPSLSQVQDFL 149 (203)
Q Consensus 84 kaVIFD~DGTLiDse~-----~~~l-----a~~~G~~~~~~-~~~~~---~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~ 149 (203)
++|+|||||||+|++. +... .+.+|.+.... .+... ..+ .++...+.. ...+.+++.+.+
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g--~~~~~~~~~----~~~~~~~~~~~~ 74 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYG--TTLAGLMIL----HEIDADEYLRYV 74 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHc--hHHHHHHHh----hCCCHHHHHHHH
Confidence 4799999999999963 2222 23557653221 12211 122 233332211 112444555555
Q ss_pred HhC----CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 150 EKR----PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 150 ~~~----~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+. ..+++||+.++|+.|+ ++++|+||++...+...+ .+|+..++..++++
T Consensus 75 ~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~ 130 (184)
T TIGR01993 75 HGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCF 130 (184)
T ss_pred hccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEe
Confidence 431 3578999999999997 589999999999999999 99998877766553
No 53
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.24 E-value=8.7e-11 Score=95.62 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=73.4
Q ss_pred EEEEECCCcccccchHHHHHHH-cC---CCc-c----HHHHHHHHhCCCCCHHHHHHHHH-hccCC-CHHHHHHHHH---
Q 028799 85 AVCFDVDSTVCVDEGIDELAEF-CG---AGK-A----VAEWTARAMGGSVPFEEALAARL-SLFKP-SLSQVQDFLE--- 150 (203)
Q Consensus 85 aVIFD~DGTLiDse~~~~la~~-~G---~~~-~----~~~~~~~~~gG~~~~~e~l~~~~-~~~~~-~~e~l~~~~~--- 150 (203)
+++|||||||+++++...+... ++ ... . .......+..+..+..+...... ..+.| +.+++..+.+
T Consensus 1 ~a~FD~DgTL~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~ 80 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTLFIFLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDALAGLLEEDVRAIVEEFV 80 (202)
T ss_pred CeEEccCCCCCCCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4799999999999885544432 22 110 0 01111222222223333333322 23455 5555544333
Q ss_pred -h-CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceE
Q 028799 151 -K-RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVI 199 (203)
Q Consensus 151 -~-~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i 199 (203)
+ ....++||+.++++.++++|++++|+|+++...++.++ .+|++.++..
T Consensus 81 ~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 81 NQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred HHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 2 12468999999999999999999999999999999999 9999876544
No 54
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.24 E-value=4e-11 Score=95.35 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=43.0
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+++||+.++|+.|+++|++++|+||++... ..+. ++|+..++..+|+|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~ 133 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFS 133 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEc
Confidence 5899999999999999999999999999988 6666 69998877776654
No 55
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.21 E-value=9.2e-11 Score=98.77 Aligned_cols=112 Identities=22% Similarity=0.199 Sum_probs=78.4
Q ss_pred hhccCCcEEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCC--CHHHHHHHH-
Q 028799 78 QLWRTADAVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP--SLSQVQDFL- 149 (203)
Q Consensus 78 ~~~~~~kaVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~--~~e~l~~~~- 149 (203)
.++..+.+++|||||||+||+. ++.++.++|...+ .++..+.+| ..-.++.+..+..... +.+++....
T Consensus 5 ~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~-~~~~~~~mG--~~~~eaa~~~~~~~~dp~s~ee~~~e~~ 81 (222)
T KOG2914|consen 5 SLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYP-WDVKVKSMG--KRTSEAARLFVKKLPDPVSREEFNKEEE 81 (222)
T ss_pred ccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCCh-HHHHHHHcC--CCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 3567788999999999999986 5677788997443 455566666 3444554444422222 444433221
Q ss_pred ---H-h-CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcC
Q 028799 150 ---E-K-RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 150 ---~-~-~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
. . ....++||+.++++.|+.+|++++++|++++...+... .++
T Consensus 82 ~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~ 130 (222)
T KOG2914|consen 82 EILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHE 130 (222)
T ss_pred HHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhh
Confidence 1 1 13689999999999999999999999999888877665 544
No 56
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.17 E-value=1.4e-10 Score=92.40 Aligned_cols=112 Identities=17% Similarity=0.113 Sum_probs=67.6
Q ss_pred EEEEECCCcccccchH-HH----HHHHcCCC-------ccHHHHHHHHhCCCCCHHH----HHHHHHhccC--CCHHHHH
Q 028799 85 AVCFDVDSTVCVDEGI-DE----LAEFCGAG-------KAVAEWTARAMGGSVPFEE----ALAARLSLFK--PSLSQVQ 146 (203)
Q Consensus 85 aVIFD~DGTLiDse~~-~~----la~~~G~~-------~~~~~~~~~~~gG~~~~~e----~l~~~~~~~~--~~~e~l~ 146 (203)
+|+||+||||+|++.. .. ++...+.. .....+....+++..++.+ .+......+. .+.+...
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPKYGE 80 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5899999999999852 22 22222210 0012333444555555544 2333222221 1232222
Q ss_pred HHHHh-CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 147 DFLEK-RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 147 ~~~~~-~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+.+. ....++||+.++|+ +++|+||+++..++..+ ++|+..++..++|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~ 132 (175)
T TIGR01493 81 RLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSV 132 (175)
T ss_pred HHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccH
Confidence 22221 13679999999998 48999999999999999 99998887766553
No 57
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.16 E-value=2.1e-10 Score=89.56 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=67.0
Q ss_pred EEEEECCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCc
Q 028799 85 AVCFDVDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPG 159 (203)
Q Consensus 85 aVIFD~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG 159 (203)
+++||+||||+|+.. |...++++|.. ...+ ....+ ..... +..... ..+++.. +.. ....+||
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~-~~~~g--~~~~~-~~~~~~----~~~~~~~-~~~-~~~~~~g 68 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGED--FQAL-KALRG--LAEEL-LYRIAT----SFEELLG-YDA-EEAYIRG 68 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhccc--HHHH-HHHHc--cChHH-HHHHHH----HHHHHhC-cch-hheeccC
Confidence 489999999999963 45555666652 2222 22232 12211 111111 1222222 222 3567899
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
+.++|+.|+++|++++|+||+++..+..++ .+ +..++..+++
T Consensus 69 ~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~ 111 (154)
T TIGR01549 69 AADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILG 111 (154)
T ss_pred HHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEe
Confidence 999999999999999999999999999888 66 6666555444
No 58
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.16 E-value=1.7e-10 Score=93.91 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCcEEEEECCCcccccch-HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH-HHHHHHh---CCCCC
Q 028799 82 TADAVCFDVDSTVCVDEG-IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQ-VQDFLEK---RPPRL 156 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~-l~~~~~~---~~~~l 156 (203)
|+++|+|||||||+|... +..+.+.+|.+. .+. ....++.. ...+...+.......++ +..+.+. ....+
T Consensus 1 m~k~viFDlDGTLiD~~~~~~~~~~~~g~~~--~~~-~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQSGLPYFAQKYNIPT--DHI-LKMIQDER--FRDPGELFGCDQELAKKLIEKYNNSDFIRYLSA 75 (197)
T ss_pred CCcEEEEecCCceEchhhccHHHHHhcCCCH--HHH-HHHHhHhh--hcCHHHHhcccHHHHHHHhhhhhHHHHHHhccC
Confidence 579999999999999653 445667788753 222 22233211 11112222110000111 1222211 13679
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+||+.++|+.|+++ ++++++||++........ .+|+..
T Consensus 76 ~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~ 114 (197)
T PHA02597 76 YDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNA 114 (197)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHH
Confidence 99999999999987 578888998776655566 777754
No 59
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.10 E-value=1.3e-09 Score=90.74 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCcEEEEECCCcccccchHHHHHHHc-CCCc---cH-HHHHHH-----HhCCCCCHHHHHHHH-HhccCC-CHHHHHH--
Q 028799 82 TADAVCFDVDSTVCVDEGIDELAEFC-GAGK---AV-AEWTAR-----AMGGSVPFEEALAAR-LSLFKP-SLSQVQD-- 147 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~~~~la~~~-G~~~---~~-~~~~~~-----~~gG~~~~~e~l~~~-~~~~~~-~~e~l~~-- 147 (203)
..+.++|||||||++.+++..+..+. +... .. ...... ...+..+... .... ...+.| +.+++++
T Consensus 4 ~~~la~FDfDgTLt~~ds~~~fl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~~l~~~~ 82 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFGSFLRFLLRHLPLNALLVIPLLPIIAIALLIGGRAARWP-MSLLLWACTFGHREAHLQDLE 82 (210)
T ss_pred cCcEEEEcCCCCCccCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccccchh-hHHHHHHHHcCCCHHHHHHHH
Confidence 45789999999999999865544322 1100 00 000000 1111111111 1111 112334 4433332
Q ss_pred --HHHhC--CCCCCCcHHHHHH-HHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 148 --FLEKR--PPRLSPGIDELVK-KLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 148 --~~~~~--~~~l~PG~~elL~-~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
+.+.+ ...++||+.++|+ +++++|++++||||++...+++++ ..++
T Consensus 83 ~~f~~~~~~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 83 ADFVAAFRDKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNF 134 (210)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccc
Confidence 22211 2468999999996 788899999999999999999998 7555
No 60
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.08 E-value=9.8e-10 Score=92.61 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=37.4
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHcCCCccceEEecC
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILNILKWDVLKVIQITS 203 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll~lGL~~~~~i~it~ 203 (203)
...++||+.++|+.|++. ++++|+||+.... -.+|+..++..+++|
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~~----~~~gl~~~fd~i~~~ 156 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQP----ELFGLGDYFEFVLRA 156 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCchH----HHCCcHHhhceeEec
Confidence 368999999999999975 9999999988651 278888877766654
No 61
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.00 E-value=4.5e-09 Score=86.62 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.+++|++.+.|+.|+++ ++++|+||+....+...+ .+||.+++..+++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s 147 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFIS 147 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEe
Confidence 68999999999999999 999999999999999998 99999988888876
No 62
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=87.36 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhcc--CC-CHHHHHHHHHhCCCCCCC
Q 028799 82 TADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLF--KP-SLSQVQDFLEKRPPRLSP 158 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~--~~-~~e~l~~~~~~~~~~l~P 158 (203)
+...++||||-||+|.++...+.+.++......++...+-.| -+.+.+.+.+..+ ++ +.+++.+.++. +++.|
T Consensus 12 ~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~--~Wne~M~rv~k~Lheqgv~~~~ik~~~r~--iP~~P 87 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKG--FWNELMDRVFKELHEQGVRIAEIKQVLRS--IPIVP 87 (256)
T ss_pred CcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccc--hHHHHHHHHHHHHHHcCCCHHHHHHHHhc--CCCCc
Confidence 344789999999999999888888888765444443332221 2455555544443 34 67888888887 58999
Q ss_pred cHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 159 GIDELVKKLKANNK-NVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 159 G~~elL~~Lk~~G~-~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
|+.++++.+++.|. .+.|||.+...+++.++ ++|+.++|.
T Consensus 88 gmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~ 129 (256)
T KOG3120|consen 88 GMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFS 129 (256)
T ss_pred cHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHH
Confidence 99999999999996 99999999999999999 999988765
No 63
>PLN02811 hydrolase
Probab=98.91 E-value=1.2e-08 Score=84.77 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCCcccccch-----HHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhc--cC-C-CHHHH----HHHHHh--CCC
Q 028799 90 VDSTVCVDEG-----IDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSL--FK-P-SLSQV----QDFLEK--RPP 154 (203)
Q Consensus 90 ~DGTLiDse~-----~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~--~~-~-~~e~l----~~~~~~--~~~ 154 (203)
|||||+||+. |..+.+.+|+... .+....++| .+..+.+...... .. . ..+.+ ..++.. ...
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~-~~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFD-WSLKAKMMG--KKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTS 77 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCC-HHHHHHccC--CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 7999999986 3455567887633 344455565 3433333332221 11 1 12222 122221 136
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH-HH-HcCCCccceEEec
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINI-LN-ILKWDVLKVIQIT 202 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~-ll-~lGL~~~~~i~it 202 (203)
.++||+.++|+.|+++|++++|+||+.+..+.. +. ..++..++..+++
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~ 127 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVT 127 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEE
Confidence 889999999999999999999999999875544 34 4577666655554
No 64
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.88 E-value=5.6e-09 Score=83.70 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
|++.++|++++++|++++|+|+++...+++++ .+|++...+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v 133 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNV 133 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEE
Confidence 66669999999999999999999999999999 999987543
No 65
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.86 E-value=6.1e-09 Score=77.33 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEE
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQ 200 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~ 200 (203)
...++||+.++|+.|+++|++++|+||+.+..++.++ .+|+..++...
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i 70 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPV 70 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhhe
Confidence 3689999999999999999999999999999999999 98886544433
No 66
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.81 E-value=1.4e-08 Score=88.60 Aligned_cols=47 Identities=26% Similarity=0.154 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.||+.++|++|+++|++++|+||+.+..+...+ .+|++.++.++|++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~ 195 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISG 195 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEEC
Confidence 489999999999999999999999999999999 99999988777753
No 67
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.73 E-value=3.5e-08 Score=86.19 Aligned_cols=47 Identities=21% Similarity=0.073 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.||+.++|++|+++|++++|+||+.+..++..+ .+|++.++.++|++
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~ 197 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICG 197 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEEC
Confidence 489999999999999999999999999999999 99999988776653
No 68
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.68 E-value=2.9e-08 Score=76.42 Aligned_cols=47 Identities=19% Similarity=-0.005 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHH-HcC-------CCccceEEe
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGG-FRHMINILN-ILK-------WDVLKVIQI 201 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~-~~~~i~~ll-~lG-------L~~~~~i~i 201 (203)
+++||+.++|++|+++|++++|+||+ ....+..++ .++ +..++...+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~ 84 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLT 84 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhh
Confidence 57999999999999999999999999 788888888 777 666555444
No 69
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.68 E-value=1e-08 Score=83.44 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=45.3
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHH-HcCCC---------ccceEEecC
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGG-FRHMINILN-ILKWD---------VLKVIQITS 203 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~-~~~~i~~ll-~lGL~---------~~~~i~it~ 203 (203)
...++||+.++|+.|+++|++++|+||+ ....++.++ .+|+. .++..++++
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~ 104 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEI 104 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeec
Confidence 3689999999999999999999999998 888889998 99998 877776653
No 70
>PRK08238 hypothetical protein; Validated
Probab=98.66 E-value=1.1e-07 Score=88.28 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred EEEEECCCcccccchHHHHHHHc-CCC-ccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcHHH
Q 028799 85 AVCFDVDSTVCVDEGIDELAEFC-GAG-KAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDE 162 (203)
Q Consensus 85 aVIFD~DGTLiDse~~~~la~~~-G~~-~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~~e 162 (203)
-.+||+||||+.++.+.+....+ ... ...-........|. ..+++.+....+ ++....+++||+.+
T Consensus 12 pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~----a~lK~~~a~~~~--------~d~~~lp~~pga~e 79 (479)
T PRK08238 12 PLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGK----AALKRRLARRVD--------LDVATLPYNEEVLD 79 (479)
T ss_pred CEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcH----HHHHHHHHhhcC--------CChhhCCCChhHHH
Confidence 48999999999999987765543 211 11111111122222 222222211000 11112468899999
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 163 LVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 163 lL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
++++++++|++++|+||+++..++.++ ++|+
T Consensus 80 ~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl 111 (479)
T PRK08238 80 YLRAERAAGRKLVLATASDERLAQAVAAHLGL 111 (479)
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999 9997
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.65 E-value=1.3e-07 Score=80.46 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCCCCh-HHHHh-hccCCc-EEEEECCCcccccchHHHHHH-HcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHH
Q 028799 68 ENTLPS-KEVLQ-LWRTAD-AVCFDVDSTVCVDEGIDELAE-FCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLS 143 (203)
Q Consensus 68 ~~~~~~-~~~~~-~~~~~k-aVIFD~DGTLiDse~~~~la~-~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e 143 (203)
+..|.| +++-+ +..+.+ +|+||+|||++|+........ .|+.. ..++ + +.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~-------------~~~y----------~--~~~ 99 (237)
T PRK11009 45 PVHWVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPG-------------SEDY----------L--KNQ 99 (237)
T ss_pred CeeEEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCC-------------cccc----------c--ChH
Confidence 356666 33332 233434 999999999999765332221 11100 0011 0 112
Q ss_pred HHHHHHHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHH-HcCC--CccceEEec
Q 028799 144 QVQDFLEK---RPPRLSPGIDELVKKLKANNKNVYLISGG----FRHMINILN-ILKW--DVLKVIQIT 202 (203)
Q Consensus 144 ~l~~~~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~----~~~~i~~ll-~lGL--~~~~~i~it 202 (203)
++.+++.+ ....++||+.++|+.|+++|+++++|||. ....++.++ .+|+ +.++.+.++
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~ 168 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFA 168 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEc
Confidence 22233221 13689999999999999999999999994 466777888 7999 666666554
No 72
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.59 E-value=3.1e-07 Score=70.10 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCC--------HHHHHHHH-HcCCCccc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGF--------RHMINILN-ILKWDVLK 197 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~--------~~~i~~ll-~lGL~~~~ 197 (203)
.++||+.++|+.|+++|++++|+||++ ...++.++ .+|+..++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~ 76 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDV 76 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEE
Confidence 579999999999999999999999999 78888888 99997433
No 73
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.55 E-value=1.4e-06 Score=75.83 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 141 ~~e~l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
+.+++.+++++..+++.||+.+++++|+++|++++|+|+|+...++.++ ++|+.+..
T Consensus 107 ~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~ 164 (277)
T TIGR01544 107 PKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPN 164 (277)
T ss_pred CHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcC
Confidence 5777888887556899999999999999999999999999999999999 89986433
No 74
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.49 E-value=3.3e-07 Score=77.36 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH--HHH-HcCCCc-cceEEecC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMIN--ILN-ILKWDV-LKVIQITS 203 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~--~ll-~lGL~~-~~~i~it~ 203 (203)
.++||+.++|++|+++|++++++||+++...+ ..+ ++|++. .+..++||
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s 76 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISS 76 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEcc
Confidence 46999999999999999999999999988765 677 999987 77777775
No 75
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.42 E-value=8.6e-07 Score=71.31 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHH------------HHHHHH-HcCCCc
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRH------------MINILN-ILKWDV 195 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~------------~i~~ll-~lGL~~ 195 (203)
++||+.++|+.|+++|++++|+||++.. .++.++ ++|+..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 95 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI 95 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE
Confidence 7899999999999999999999998863 467788 999965
No 76
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.38 E-value=3.3e-06 Score=73.09 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=56.8
Q ss_pred cCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcH
Q 028799 81 RTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGI 160 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~ 160 (203)
.+..+|+||+|+|++|...+. +... .+| .++ +.+...++.......++||+
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~--~~~~-------------~~~-~~~-------------~~~~w~~wv~~~~a~~ipGA 123 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQ--GYQV-------------LNN-KPF-------------DPETWDKWVQAAQAKPVAGA 123 (266)
T ss_pred CCCCEEEEeCccccccChHHH--HHHh-------------cCC-CcC-------------CHHHHHHHHHcCCCCcCccH
Confidence 456799999999999965431 1100 010 011 11222233333346899999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHH---HHHHHH-HcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGFRH---MINILN-ILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~---~i~~ll-~lGL~~ 195 (203)
.++|++|+++|++++++||.... .+...+ .+|++.
T Consensus 124 ~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~ 162 (266)
T TIGR01533 124 LDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ 162 (266)
T ss_pred HHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCC
Confidence 99999999999999999998744 344667 899865
No 77
>PLN02645 phosphoglycolate phosphatase
Probab=98.35 E-value=2.1e-06 Score=75.46 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=61.8
Q ss_pred CCCCChHHHHhhccCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHH
Q 028799 68 ENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQD 147 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~ 147 (203)
+...+.+++.++...+++++||+||||++. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~------------------------~------------------------- 43 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKG------------------------D------------------------- 43 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeC------------------------C-------------------------
Confidence 455566778888889999999999999762 0
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHH-HcCCCccceEEecC
Q 028799 148 FLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR---HMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 148 ~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~---~~i~~ll-~lGL~~~~~i~it~ 203 (203)
.++||+.+.|+.|+++|++++++||++. ..+..-+ .+|++....-++||
T Consensus 44 -------~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 44 -------KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSS 96 (311)
T ss_pred -------ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeeh
Confidence 2479999999999999999999999883 3333344 88987766666664
No 78
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.34 E-value=2e-06 Score=67.37 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHH-HcCCCc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFR---------------HMINILN-ILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~---------------~~i~~ll-~lGL~~ 195 (203)
+++||+.++|++|+++|++++|+||+.+ ..+..++ ++|+..
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 83 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAV 83 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCce
Confidence 5799999999999999999999999884 4556677 888863
No 79
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.28 E-value=4.6e-06 Score=70.94 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=77.3
Q ss_pred cCCcEEEEECCCcccccc-----hHHHHHHHcCCCccHHHH---HHH-H------------hCCCCCHHHHHHHHHhc-c
Q 028799 81 RTADAVCFDVDSTVCVDE-----GIDELAEFCGAGKAVAEW---TAR-A------------MGGSVPFEEALAARLSL-F 138 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse-----~~~~la~~~G~~~~~~~~---~~~-~------------~gG~~~~~e~l~~~~~~-~ 138 (203)
..+++|+||++|||+.+. .+..+++.+|.+.....+ ... + ..|.++..+.....+.. +
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~f 84 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVESTF 84 (237)
T ss_pred cceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHHh
Confidence 457899999999999843 266788888887322111 111 1 11334444433322221 1
Q ss_pred C--C--CHHHHHH-----HHHh---CCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 139 K--P--SLSQVQD-----FLEK---RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 139 ~--~--~~e~l~~-----~~~~---~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
. + ..++..+ .+.. ......+|+.++++.||++|..++++||..... +.++ .+|+..+++.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~~l~~~fD~vv~S 161 (237)
T KOG3085|consen 85 GKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPLGLSAYFDFVVES 161 (237)
T ss_pred ccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHhhccCHHHhhhhhhhh
Confidence 1 1 1222222 1222 135788999999999999999999999988765 4667 99999888888876
No 80
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.24 E-value=2.8e-05 Score=65.47 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=35.1
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-Hc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-IL 191 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~l 191 (203)
...++||+.++|+.|+++|++++|+||++...++.++ +.
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 3579999999999999999999999999998887777 65
No 81
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.21 E-value=4.7e-06 Score=67.21 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGF 181 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~ 181 (203)
..++||+.++|++|+++|++++|+||+.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999987
No 82
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.15 E-value=4.4e-06 Score=67.64 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=39.4
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.+++||+.++|+.|++.|++++|+||.....+..+. .+|+..
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD 168 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc
Confidence 468999999999999999999999999999999999 999965
No 83
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.01 E-value=2.2e-05 Score=67.35 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
.|++.+.|+.|+++|++++|+||.+...+..++ .+|+..+++
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i 65 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPFI 65 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCEE
Confidence 345677888899999999999999999999988 999876543
No 84
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.95 E-value=3e-05 Score=64.14 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
|...+.|+.|+++|++++++|+.+...+..++ .+|++.+
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 62 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGP 62 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCc
Confidence 34456677788899999999999999888888 8888754
No 85
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.92 E-value=9.8e-05 Score=62.09 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=72.5
Q ss_pred CCcEEEEECCCcccccch-HH---------HHHHHcCCCccHH-HHHHHHhCCCCCHHHHHHHHHhccCC-CHHHHHHHH
Q 028799 82 TADAVCFDVDSTVCVDEG-ID---------ELAEFCGAGKAVA-EWTARAMGGSVPFEEALAARLSLFKP-SLSQVQDFL 149 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~-~~---------~la~~~G~~~~~~-~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~l~~~~ 149 (203)
+++.++||+|.||+...+ ++ .+.+++|++++.. .+...+.. .+--+++.....-.. +.+++.++.
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk---~YG~t~aGL~~~~~~~d~deY~~~V 90 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYK---EYGLTMAGLKAVGYIFDADEYHRFV 90 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHH---HHhHHHHHHHHhcccCCHHHHHHHh
Confidence 889999999999998643 32 3445678874321 11111110 000111111111111 356666655
Q ss_pred HhC----CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEe
Q 028799 150 EKR----PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQI 201 (203)
Q Consensus 150 ~~~----~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~i 201 (203)
... .++|-|-..++|-.|+.++ ..+.||+.+.-+.+++ .+|+.++|.-+|
T Consensus 91 ~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii 145 (244)
T KOG3109|consen 91 HGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGII 145 (244)
T ss_pred hccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhcccee
Confidence 421 2677777889999998775 8999999999999999 999998876554
No 86
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.89 E-value=0.00013 Score=61.92 Aligned_cols=86 Identities=20% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcHH
Q 028799 82 TADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGID 161 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~~ 161 (203)
...+++||+|.|++++...... ..+|... + +...+.++......+..||+.
T Consensus 76 g~~A~V~DIDET~LsN~py~~~-~~~g~~~---------------~-------------~~~~~~~wv~~~~apaip~al 126 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKK-HGYGTEK---------------T-------------DPTAFWLWLGKGAAPALPEGL 126 (229)
T ss_pred CCcEEEEccccccccCHHHHHH-hccCCCc---------------C-------------CHHHHHHHHHcCCCCCCHHHH
Confidence 5679999999999996442111 1122110 0 111223333333568999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHH---HHHHH-HcCCCcc
Q 028799 162 ELVKKLKANNKNVYLISGGFRHM---INILN-ILKWDVL 196 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~---i~~ll-~lGL~~~ 196 (203)
++++.|+++|++++++||-+... +...| ..|++.+
T Consensus 127 ~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 127 KLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999998665 55666 8888754
No 87
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.86 E-value=2.4e-05 Score=63.77 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=46.0
Q ss_pred EEEECCCcccccch-H-HHHHHHcCCCcc--HHHHHHHHhCCCCCHHHHHHHHHhccCC-CHHHHHHHHHh----CCCCC
Q 028799 86 VCFDVDSTVCVDEG-I-DELAEFCGAGKA--VAEWTARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEK----RPPRL 156 (203)
Q Consensus 86 VIFD~DGTLiDse~-~-~~la~~~G~~~~--~~~~~~~~~gG~~~~~e~l~~~~~~~~~-~~e~l~~~~~~----~~~~l 156 (203)
|++||||||.|... + ..+-+.+|.... ..+. .+ ....+ .++.... ..+.+.+++.+ ...++
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~-----~~-~~~~~----~~g~~~~e~~~~~~~~~~~~~~f~~l~p 74 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDI-----TG-YWDWE----KWGITEPEFYEKLWRFYEEPGFFSNLPP 74 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGG-----TS-SSHHH----HHHHHSTTHHHHHHHHHTSTTTTTT--B
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHh-----hh-hhHHH----HhCCCCHHHHHHHHHHHhChhhhcCCCc
Confidence 88999999999864 3 334456665411 1111 00 01111 1111111 12333333331 14689
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
+||+.|.|+.|++.|+.+.++|+.+..
T Consensus 75 ~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 75 IPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred cHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 999999999999999888887777643
No 88
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.86 E-value=5.1e-05 Score=62.56 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
.|...+.|+.|+++|++++++|+.+...+..+. .++++.+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~ 60 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGP 60 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCc
Confidence 445577788889999999999999999888888 8888754
No 89
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.82 E-value=4.7e-06 Score=67.54 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHH-HcCCC
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGF-RHMINILN-ILKWD 194 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~-~~~i~~ll-~lGL~ 194 (203)
.+.++|++.+.|++|+.+|++++++|... ...++.++ .+++.
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 37899999999999999999999999655 45778888 99998
No 90
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.81 E-value=4.7e-05 Score=60.74 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMIN---ILN 189 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~---~ll 189 (203)
..||+.++++.++++|++++++|+.+...+. .++
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l 64 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL 64 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH
Confidence 4699999999999999999999999988764 555
No 91
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.79 E-value=7.8e-05 Score=63.61 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
.+.|+.|+++|++++++|+.+...+..++ .++++.+
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILGALSLDAY 61 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCc
Confidence 45566777888999999998888888888 8887654
No 92
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.78 E-value=9.2e-05 Score=69.73 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCH------------HHHHHHH-HcCCC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFR------------HMINILN-ILKWD 194 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~------------~~i~~ll-~lGL~ 194 (203)
++||+.+.|+.|++.|++++|+||... ..++.++ .+|+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip 249 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP 249 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc
Confidence 689999999999999999999999776 4577788 99986
No 93
>PRK10976 putative hydrolase; Provisional
Probab=97.77 E-value=8.7e-05 Score=62.98 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
.+.|+.++++|++++|+|+.+...+..++ .+|++.+
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSY 61 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCe
Confidence 45566777888888888888888887777 8887653
No 94
>PRK10444 UMP phosphatase; Provisional
Probab=97.73 E-value=5.7e-05 Score=64.53 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HH-HcCCCccceEEecC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINI---LN-ILKWDVLKVIQITS 203 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~---ll-~lGL~~~~~i~it~ 203 (203)
+.||+.+.++.|+++|.+++++||.+...... .+ .+|++.-..-++||
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 47888999999999999999999988754433 23 67875444444554
No 95
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.71 E-value=5.8e-05 Score=65.45 Aligned_cols=49 Identities=29% Similarity=0.241 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH----HHHH-cCCCccceEEecC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMIN----ILNI-LKWDVLKVIQITS 203 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~----~ll~-lGL~~~~~i~it~ 203 (203)
.++||+.++|+.|+++|.++.++||+++..-+ .+.. .+++.-..-++||
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS 77 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTS 77 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecH
Confidence 46899999999999999999999999865433 3334 6666666666665
No 96
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.70 E-value=0.00014 Score=61.58 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.+.|+.++++|++++|+|+.+...+..++ .++++.
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 45566778889999999998888888877 888764
No 97
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.69 E-value=0.00013 Score=62.92 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHH-HcCCCccceEEec
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGF---RHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~---~~~i~~ll-~lGL~~~~~i~it 202 (203)
++||+.++|+.|+++|++++++||++ +......+ .+|+.....-++|
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~t 69 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFS 69 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEec
Confidence 57889999999999999999999965 33333345 8888654433444
No 98
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.68 E-value=0.00014 Score=61.67 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
..+.|+.++++|++++|+|+.+...+..++ .++++.+
T Consensus 25 ~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~ 62 (264)
T COG0561 25 TKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGP 62 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCcc
Confidence 355666788899999999999999899998 9998863
No 99
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.67 E-value=0.00015 Score=61.58 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.+.|+.|+++|++++|+|+.+...+..++ .++++.
T Consensus 26 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 45667778899999999999998888888 888753
No 100
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.61 E-value=0.0001 Score=57.82 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=41.3
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc-cceEEec
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV-LKVIQIT 202 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~-~~~i~it 202 (203)
+.++||+.++|++|+ ++++++|+||+.+..++.++ ++|+.. ++..+++
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~ 93 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLF 93 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEE
Confidence 578999999999998 67999999999999999999 999854 5455554
No 101
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.60 E-value=0.00024 Score=62.36 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
+.+.|+.|+++|++++++|+.....+..+. .++++..+
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPF 61 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 355677888999999999999999999998 99987643
No 102
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.58 E-value=9.2e-05 Score=63.98 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
..++||+.++|+.|+++|++++++||++....+..+ .+|+..
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~ 228 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD 228 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcC
Confidence 478999999999999999999999999999998888 888875
No 103
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.58 E-value=0.00018 Score=64.77 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=34.9
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHH-HcCCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGG---------------FRHMINILN-ILKWD 194 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~---------------~~~~i~~ll-~lGL~ 194 (203)
..++||+.++|++|+++|++++|+||+ +...+..++ .+|+.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~ 85 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK 85 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc
Confidence 479999999999999999999999995 345566677 88885
No 104
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.55 E-value=0.00012 Score=65.47 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-Hc-C-------CCccceEEecC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-IL-K-------WDVLKVIQITS 203 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~l-G-------L~~~~~i~it~ 203 (203)
+...||+.++|+.|+++|++++|+||++...++.++ .+ | |..++..+||+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 567999999999999999999999999999999999 75 7 88999988874
No 105
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.53 E-value=0.0001 Score=59.85 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.7
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 163 LVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 163 lL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
.++.|+++|++++|+||.+...+..++ .+|+..++
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f 91 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLY 91 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceee
Confidence 556677899999999999999999998 99987654
No 106
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.52 E-value=0.00034 Score=59.90 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
.+.|+.|+++|++++++|+.+...+.+++ .+|++
T Consensus 30 ~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 30 APWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 45566778889999999999988888888 88885
No 107
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.42 E-value=0.0012 Score=57.26 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHH-HcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHM---INILN-ILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~---i~~ll-~lGL~~ 195 (203)
..+..||+.+++++++++|+++.++||..... +...| ..|+..
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999997542 33455 778754
No 108
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.41 E-value=0.00033 Score=56.10 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHH-HcCCCccceEEe
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGG---------------FRHMINILN-ILKWDVLKVIQI 201 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~---------------~~~~i~~ll-~lGL~~~~~i~i 201 (203)
.+++||+.++|++|+++|++++|+||. ....+..++ .+|+. +..+.+
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~-fd~ii~ 90 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII-FDDVLI 90 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc-eeEEEE
Confidence 478999999999999999999999997 355677888 99997 444443
No 109
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.30 E-value=0.00019 Score=60.65 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=54.5
Q ss_pred cCCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcH
Q 028799 81 RTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGI 160 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~ 160 (203)
.+..+|+||+|+|++++-.+..... ++.. . + +.+.+.++......+..||+
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~-~~~~---------------~--------~-----~~~~w~~wv~~~~~~aip~a 120 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLI-FGGE---------------S--------F-----SPEDWDEWVASGKAPAIPGA 120 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHH-HHTH---------------H--------H------CCHHHHHHHCTGGEEETTH
T ss_pred CCCcEEEEECCcccccCHHHHHHHh-hccC---------------C--------C-----ChHHHHHHHhcccCcccHHH
Confidence 6788999999999997433211111 1100 0 0 00112233333234789999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHH---HHHHHH-HcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGFRH---MINILN-ILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~---~i~~ll-~lGL~~ 195 (203)
.+++++++++|++|+++||.+.. .+..-| ..|+..
T Consensus 121 ~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~ 159 (229)
T PF03767_consen 121 LELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPG 159 (229)
T ss_dssp HHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc
Confidence 99999999999999999997654 333445 777744
No 110
>PTZ00174 phosphomannomutase; Provisional
Probab=97.27 E-value=0.00073 Score=57.26 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.4
Q ss_pred ccCCcEEEEECCCccccc
Q 028799 80 WRTADAVCFDVDSTVCVD 97 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDs 97 (203)
...+++++|||||||+++
T Consensus 2 ~~~~klia~DlDGTLL~~ 19 (247)
T PTZ00174 2 EMKKTILLFDVDGTLTKP 19 (247)
T ss_pred CCCCeEEEEECcCCCcCC
Confidence 356899999999999885
No 111
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.19 E-value=0.0043 Score=58.26 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-H-cCCCccceE
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-I-LKWDVLKVI 199 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~-lGL~~~~~i 199 (203)
.+.|.+.+.+ +++|.. +|+|++++.++++++ . +|++....+
T Consensus 110 ~l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgT 152 (497)
T PLN02177 110 DVHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGADKVLGT 152 (497)
T ss_pred hcCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEec
Confidence 3677666654 567765 999999999999999 5 899976443
No 112
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.15 E-value=0.00047 Score=53.90 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=43.4
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
.+.++|.+.++++++|+.|+-+..+|=.+.+.+-..+ .+++..++...+.
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vi 89 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVI 89 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEe
Confidence 3689999999999999999999999988888777777 9999888776653
No 113
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.11 E-value=0.0016 Score=50.31 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
.+.+++.+.|+.++++|+.++++|+.+..
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 35677788888888888999999888654
No 114
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.10 E-value=0.00083 Score=49.65 Aligned_cols=48 Identities=21% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHH-HcCCCccceEEec
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHM---INILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~---i~~ll-~lGL~~~~~i~it 202 (203)
.++||+.++++.|+++|.+++++||++... ....+ .+|++.-..-++|
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t 65 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT 65 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC
Confidence 579999999999999999999999998443 23344 8888754444444
No 115
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.10 E-value=0.0012 Score=52.91 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
..++||+.++|++|+++|++++|+||++.
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 46899999999999999999999999984
No 116
>PLN02887 hydrolase family protein
Probab=97.09 E-value=0.0014 Score=62.61 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
..+.|+.++++|++++|+|+.+...+..++ .++++
T Consensus 330 t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 330 NAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 356677888999999999999999888888 88875
No 117
>PRK06769 hypothetical protein; Validated
Probab=96.97 E-value=0.0014 Score=52.79 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=35.0
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHH--------HHHHHH-HcCCCccce
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRH--------MINILN-ILKWDVLKV 198 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~--------~i~~ll-~lGL~~~~~ 198 (203)
..++||+.++|++|+++|++++|+||+... .....+ .+|++.++.
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 80 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYL 80 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEE
Confidence 368999999999999999999999998742 122335 788876543
No 118
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.92 E-value=0.0011 Score=58.48 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.7
Q ss_pred EEEEECCCcccccch
Q 028799 85 AVCFDVDSTVCVDEG 99 (203)
Q Consensus 85 aVIFD~DGTLiDse~ 99 (203)
+++||+||||++++.
T Consensus 2 ~~ifD~DGvL~~g~~ 16 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK 16 (321)
T ss_pred EEEEeCcCceECCcc
Confidence 689999999998643
No 119
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.88 E-value=0.0025 Score=51.78 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-Hc
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-IL 191 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~l 191 (203)
|.+.+.|+.|+++|++++++|+.....+..++ .+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 55567777888888888888888888888777 53
No 120
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.69 E-value=0.0045 Score=59.96 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.+.|+.|+++|++++++|+.+...+..++ .+|+..
T Consensus 439 ~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 439 LDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKD 474 (694)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 34566778889999999999988888888 888754
No 121
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.62 E-value=0.011 Score=51.59 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEec
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it 202 (203)
..|.+.+-|..||+.|.-+++=|.|.++-+..-+ .++|..+|.++|+
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~ 190 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIIC 190 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEe
Confidence 3566778888999999999999999999999988 9999999999886
No 122
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.59 E-value=0.0035 Score=49.98 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc-cc-eEEe
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV-LK-VIQI 201 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~-~~-~i~i 201 (203)
+.++||+.++|+.|++. ++++|+|++.+..++.++ .++... ++ ..++
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~ 106 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRII 106 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEE
Confidence 67899999999999954 999999999999999999 999874 55 3433
No 123
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.57 E-value=0.0042 Score=49.80 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHH-HcCCCc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGF-RHMINILN-ILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~-~~~i~~ll-~lGL~~ 195 (203)
.++||+.++|+.|+++|++++|+||+. ...+..++ .+|+..
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~ 85 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV 85 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE
Confidence 568999999999999999999999999 67777777 888753
No 124
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.47 E-value=0.0065 Score=52.29 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHH-HcC
Q 028799 156 LSPGIDELVKKLKA-NNKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 156 l~PG~~elL~~Lk~-~G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
+.|...+.|+.|++ .|++++|+|+.+...+..++ .++
T Consensus 37 i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 37 VPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 44666777777776 68888888888888777766 554
No 125
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.44 E-value=0.0044 Score=54.62 Aligned_cols=47 Identities=15% Similarity=-0.063 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-H----cCCCccceEEe
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-I----LKWDVLKVIQI 201 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~----lGL~~~~~i~i 201 (203)
.++||+.++|+.|+++|++++|+|++....+..++ + +++..++...+
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~ 82 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARS 82 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEE
Confidence 35899999999999999999999999999999998 8 88876665543
No 126
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=96.37 E-value=0.032 Score=52.26 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHH-H-cCCCccc
Q 028799 163 LVKKLKANNKNVYLISGGFRHMINILN-I-LKWDVLK 197 (203)
Q Consensus 163 lL~~Lk~~G~~vaIVTn~~~~~i~~ll-~-lGL~~~~ 197 (203)
.++..++.| +++|+|.+++-++++++ . +|.+...
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~Vv 136 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVI 136 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEE
Confidence 566777788 99999999999999999 4 9988753
No 127
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.12 E-value=0.0082 Score=56.80 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCCCCCcHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 153 PPRLSPGIDELVKKLKANN-KNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G-~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
..+++||+.+++++|+++| ++++|+||.+...++.++ ++|++.++.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~ 429 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA 429 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec
Confidence 3579999999999999999 999999999999999999 999987654
No 128
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.89 E-value=0.016 Score=46.18 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=39.5
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc-cceE
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV-LKVI 199 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~-~~~i 199 (203)
+...||+.++|+.|.+. +.++|.|++.+..++.++ .++... ++.-
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~ 87 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISR 87 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeE
Confidence 56899999999999987 999999999999999999 998765 4433
No 129
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=95.85 E-value=0.012 Score=55.65 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCCCCcHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 154 PRLSPGIDELVKKLKANNK-NVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~-~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
.+++||+.+++++|+++|+ +++++||.+...++.++ ++|++.++.
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~ 407 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHA 407 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhh
Confidence 5799999999999999999 99999999999999999 999987653
No 130
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.75 E-value=0.016 Score=45.67 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 163 LVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 163 lL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
.+++|+++|++++|+||++...++.++ ++|++.++.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~ 72 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQ 72 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 799999999999999999999999999 999987653
No 131
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.71 E-value=0.043 Score=47.10 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCcEEEEECCCcccccchHHHHHHHcCCCccHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHhCCCCCCCcHH
Q 028799 82 TADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGID 161 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~~~~la~~~G~~~~~~~~~~~~~gG~~~~~e~l~~~~~~~~~~~e~l~~~~~~~~~~l~PG~~ 161 (203)
+.++|+.|+|-|++|..+.+-..-.-+.+. +++....+.......+.||+.
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f-----------------------------~pe~Wd~wV~a~~sk~vpGA~ 128 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGF-----------------------------TPETWDKWVQAKKSKAVPGAV 128 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCC-----------------------------CccchHHHHhhcccccCccHH
Confidence 445999999999999654322111111110 122223333333468999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHH-H---HHHH-HcCCCc
Q 028799 162 ELVKKLKANNKNVYLISGGFRHM-I---NILN-ILKWDV 195 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~-i---~~ll-~lGL~~ 195 (203)
|++++..++|-.+.-+||...+. . ..-+ +.||+.
T Consensus 129 eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~ 167 (274)
T COG2503 129 EFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQ 167 (274)
T ss_pred HHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccc
Confidence 99999999999999999998776 2 2234 777754
No 132
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.36 E-value=0.046 Score=43.88 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMI 185 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i 185 (203)
..||+.+++..++++||++.-+|+.+...+
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa 57 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQA 57 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHH
Confidence 468888899999999999999998886544
No 133
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.28 E-value=0.035 Score=47.14 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHH-HcCCCccceEEecC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGG---FRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~---~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
++||+.+.|+.|+++|++++++||+ +...+...+ .+|++....-+|||
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTA 69 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeH
Confidence 4678999999999999999999983 355566667 89987655555554
No 134
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.23 E-value=0.054 Score=52.97 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 155 RLSPGIDELVKKLKAN-NKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~-G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
.+.+.+.+.|+.|.+. |..++|+|+.....++.++ .+++
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l 554 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPI 554 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCe
Confidence 3557778888888884 9999999999988888877 5543
No 135
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.13 E-value=0.13 Score=42.53 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHH
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINIL 188 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~l 188 (203)
..++||++.+.|+.-++.|++++|-|+|+-...+-+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~ 136 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLF 136 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHh
Confidence 468999999999999999999999999987754433
No 136
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=95.12 E-value=0.031 Score=53.09 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
.+++||+.+++++|+++|++++++||.+...++.++ ++|++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 578999999999999999999999999999999999 99996
No 137
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.12 E-value=0.023 Score=48.56 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHH-HcCCCccceEEec
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHM---INILN-ILKWDVLKVIQIT 202 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~---i~~ll-~lGL~~~~~i~it 202 (203)
+.||+.+.|+.|+++|++++++||.+... +...+ .+|++.-..-++|
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~t 72 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFT 72 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEc
Confidence 68999999999999999999999976553 44555 8888643333444
No 138
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=95.02 E-value=0.053 Score=44.96 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
...|++.++|+.+.+ .+.++|-|++...+++.++ .+|+
T Consensus 45 ~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 45 LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTELGV 83 (195)
T ss_pred EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHhcc
Confidence 468999999999987 7999999999999999999 8876
No 139
>PLN02423 phosphomannomutase
Probab=94.27 E-value=0.026 Score=47.89 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=15.2
Q ss_pred cCCcEEE-EECCCcccccch
Q 028799 81 RTADAVC-FDVDSTVCVDEG 99 (203)
Q Consensus 81 ~~~kaVI-FD~DGTLiDse~ 99 (203)
+++++++ |||||||++++.
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~ 23 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRK 23 (245)
T ss_pred CccceEEEEeccCCCcCCCC
Confidence 5677666 999999999753
No 140
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.18 E-value=0.15 Score=50.93 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHH
Q 028799 156 LSPGIDELVKKL-KANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 156 l~PG~~elL~~L-k~~G~~vaIVTn~~~~~i~~ll 189 (203)
+.|++.++|+.| ++.|..++|+|+.....++.++
T Consensus 617 p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f 651 (854)
T PLN02205 617 PSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWF 651 (854)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHh
Confidence 456778888887 6779999999999999988877
No 141
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.17 E-value=0.076 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 164 VKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 164 L~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
+..|+++|++++|+||+....++..+ ++|+..++.
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~ 78 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE 78 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe
Confidence 44667889999999999999999999 999987654
No 142
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.11 E-value=0.026 Score=45.56 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=16.7
Q ss_pred ccCCcEEEEECCCccccc
Q 028799 80 WRTADAVCFDVDSTVCVD 97 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDs 97 (203)
|+.+++++||+||||+|.
T Consensus 4 ~~~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 4 AKNIKLVILDVDGVMTDG 21 (169)
T ss_pred cccCeEEEEeCceeeECC
Confidence 677999999999999997
No 143
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=93.85 E-value=0.09 Score=48.85 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH--Hc--------CCCccceEEecC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN--IL--------KWDVLKVIQITS 203 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll--~l--------GL~~~~~i~it~ 203 (203)
+..-|.+..+|+.||+.|.++.|+||++..+++.++ .+ +|..+|+++||.
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~ 241 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVD 241 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEc
Confidence 345789999999999999999999999999998877 44 567899999874
No 144
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.59 E-value=0.18 Score=41.31 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
..+.|+.|+++|++++++||.+...+..++ .+|++
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 467888889999999999999999999999 99986
No 145
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=93.51 E-value=0.035 Score=43.74 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=13.4
Q ss_pred CcEEEEECCCccccc
Q 028799 83 ADAVCFDVDSTVCVD 97 (203)
Q Consensus 83 ~kaVIFD~DGTLiDs 97 (203)
+++|+||+||||++.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 578999999999994
No 146
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=93.22 E-value=0.15 Score=43.85 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 141 ~~e~l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+.+++.+..++..+.+.+|+.++++.|+++++|+.|.|+|....++.++ +.|.-.
T Consensus 76 ~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~ 131 (246)
T PF05822_consen 76 TKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFH 131 (246)
T ss_dssp BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--B
T ss_pred CHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCC
Confidence 3456667777666899999999999999999999999999999999999 776543
No 147
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.08 E-value=0.25 Score=41.34 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
.|+..+.|+.|+++|++++++|+.+...+..++ .+|+...
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~ 57 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPP 57 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCc
Confidence 345688889999999999999999999888888 9998653
No 148
>PRK10671 copA copper exporting ATPase; Provisional
Probab=92.83 E-value=0.18 Score=50.11 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=40.5
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
-+++||+.+.++.|+++|++++++|+.....++.++ .+|++.++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~ 693 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVI 693 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence 478999999999999999999999999999999999 99997644
No 149
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=92.75 E-value=0.052 Score=43.70 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=18.7
Q ss_pred HhhccCCcEEEEECCCcccccc
Q 028799 77 LQLWRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 77 ~~~~~~~kaVIFD~DGTLiDse 98 (203)
.+...+++.+|||+||||+|..
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ 23 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGK 23 (170)
T ss_pred hhhhhhceEEEEeccceeecCe
Confidence 3456789999999999999974
No 150
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=92.63 E-value=0.2 Score=50.26 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=39.5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
+++||+.+.++.|++.|+++.++||.....+..+. .+|+...
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~ 570 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSK 570 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC
Confidence 78999999999999999999999999999999999 9999653
No 151
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.35 E-value=0.33 Score=40.81 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.|...+.|+.|+++|++++++||.+...+..++ .++++.
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 345577888899999999999999999988888 888874
No 152
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=92.33 E-value=0.21 Score=48.79 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
++.||+.+.++.|++.|+++.++|+.....+..+. .+|+++++
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI 489 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence 78999999999999999999999999999999999 99997643
No 153
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=92.08 E-value=0.38 Score=39.27 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
|...+.|+.|+++|++++++|+.+...+..++ .+|+..+
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~ 57 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDP 57 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCe
Confidence 33456677888999999999999999888888 8887554
No 154
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=92.07 E-value=0.063 Score=43.94 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.9
Q ss_pred EEEECCCcccccch
Q 028799 86 VCFDVDSTVCVDEG 99 (203)
Q Consensus 86 VIFD~DGTLiDse~ 99 (203)
++|||||||+|++.
T Consensus 1 i~~DlDGTLl~~~~ 14 (225)
T TIGR01482 1 IASDIDGTLTDPNR 14 (225)
T ss_pred CeEeccCccCCCCc
Confidence 58999999999753
No 155
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=92.05 E-value=0.27 Score=48.00 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
++.||+.+.++.||+.|+++.++|+-....++.+. .+|+++++
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~ 488 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFL 488 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEE
Confidence 67999999999999999999999999999999999 99998653
No 156
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=91.94 E-value=0.28 Score=48.31 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
-+++||+.+.++.|+++|++++++||.....++.+. .+|++.
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~ 609 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF 609 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe
Confidence 479999999999999999999999999999999999 999974
No 157
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.93 E-value=0.99 Score=38.76 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 141 ~~e~l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+.++++++-+. ..++.||+.+.++.|.+. ++-+|+|.+.++.++++. .+|++.
T Consensus 70 t~~dlrr~sE~-sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Pr 123 (315)
T COG4030 70 TNRDLRRISEL-SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPR 123 (315)
T ss_pred cHHHHHHHHHh-hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCc
Confidence 45566666554 368999999999998865 788889999999999999 988853
No 158
>PTZ00445 p36-lilke protein; Provisional
Probab=91.73 E-value=0.19 Score=42.35 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
.+.|.+..++..|++.|++++|||=+...
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 46778888888999999999999877653
No 159
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.63 E-value=1.6 Score=37.45 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HH-HcCCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINI---LN-ILKWD 194 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~---ll-~lGL~ 194 (203)
..-+.+.++++.|+++|+++.-+|..+..+... -+ .+|++
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 466889999999999999999999998665443 34 66764
No 160
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.58 E-value=0.5 Score=47.75 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCCcHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHH-HcC
Q 028799 154 PRLSPGIDELVKKLKAN-NKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~-G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
..+.|++.++|+.|.+. +-.++|+|+.....++.++ ..+
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 45778899999999876 7899999999999999988 544
No 161
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.50 E-value=0.38 Score=39.03 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
+.|...+.|+.|+++|++++++|+.+...+..++ .+++..+
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~ 57 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDY 57 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSE
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhh
Confidence 4566678888999999999999999999999999 8888743
No 162
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=91.39 E-value=0.34 Score=47.31 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=40.7
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
-++.||+.+.+++||+.|+++.++|+-....+..+. .+|+++++
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~ 484 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFV 484 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEE
Confidence 379999999999999999999999999999999999 99998643
No 163
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=91.21 E-value=0.54 Score=39.62 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 160 IDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
..+.++.|+++|++++++|+.+...+..++ .+|+..
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 577888889999999999999999999888 999864
No 164
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=91.14 E-value=0.45 Score=38.64 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
...|.+.+-+..+++.|+++.|+||+...-+..+. .+|++.+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFI 88 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCcee
Confidence 45666777888899999999999999999999988 9998764
No 165
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=90.94 E-value=0.13 Score=41.80 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=11.5
Q ss_pred EEEECCCcccccc
Q 028799 86 VCFDVDSTVCVDE 98 (203)
Q Consensus 86 VIFD~DGTLiDse 98 (203)
|+||+||||+++.
T Consensus 1 i~~DlDGTLl~~~ 13 (254)
T PF08282_consen 1 IFSDLDGTLLNSD 13 (254)
T ss_dssp EEEECCTTTCSTT
T ss_pred cEEEECCceecCC
Confidence 6899999999964
No 166
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=90.39 E-value=0.14 Score=40.76 Aligned_cols=25 Identities=16% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGG 180 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~ 180 (203)
+.|++.+.|+.|++.|++++|+||=
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3567888888888888888888874
No 167
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=89.98 E-value=0.16 Score=42.75 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=12.1
Q ss_pred EEEEECCCcccccc
Q 028799 85 AVCFDVDSTVCVDE 98 (203)
Q Consensus 85 aVIFD~DGTLiDse 98 (203)
+++|||||||++.+
T Consensus 1 li~~DlDGTLl~~~ 14 (256)
T TIGR00099 1 LIFIDLDGTLLNDD 14 (256)
T ss_pred CEEEeCCCCCCCCC
Confidence 47899999999974
No 168
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=89.90 E-value=0.51 Score=46.35 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=40.9
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
-++.|++.+.++.||++|+++.++|+-.+..++.+. .+|++.++
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~ 580 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVR 580 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhe
Confidence 479999999999999999999999999999999999 99997654
No 169
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=89.65 E-value=0.89 Score=41.25 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH----HcCCCccceEEec
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN----ILKWDVLKVIQIT 202 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll----~lGL~~~~~i~it 202 (203)
.--|....+++.|+++|.++.++||++..+++.-+ --+|.++++++|.
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIv 291 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIV 291 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEE
Confidence 34577889999999999999999999999987533 4456677777763
No 170
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=89.63 E-value=0.2 Score=42.56 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.6
Q ss_pred CcEEEEECCCcccccch
Q 028799 83 ADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~ 99 (203)
++.++||+||||++...
T Consensus 1 ~~~~~~D~DGtl~~~~~ 17 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKE 17 (249)
T ss_pred CCEEEEeCCCceEcCCe
Confidence 46899999999999763
No 171
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=89.47 E-value=0.18 Score=41.32 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=12.0
Q ss_pred EEEEECCCcccccc
Q 028799 85 AVCFDVDSTVCVDE 98 (203)
Q Consensus 85 aVIFD~DGTLiDse 98 (203)
.+++||||||++++
T Consensus 1 ~i~~DlDGTLL~~~ 14 (221)
T TIGR02463 1 WVFSDLDGTLLDSH 14 (221)
T ss_pred CEEEeCCCCCcCCC
Confidence 37899999999975
No 172
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=89.30 E-value=0.19 Score=42.06 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.4
Q ss_pred EEEEECCCccccc
Q 028799 85 AVCFDVDSTVCVD 97 (203)
Q Consensus 85 aVIFD~DGTLiDs 97 (203)
.++|||||||++.
T Consensus 1 li~~DlDGTLl~~ 13 (225)
T TIGR02461 1 VIFTDLDGTLLPP 13 (225)
T ss_pred CEEEeCCCCCcCC
Confidence 4789999999985
No 173
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=88.88 E-value=0.23 Score=36.52 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.8
Q ss_pred EEEECCCcccccch
Q 028799 86 VCFDVDSTVCVDEG 99 (203)
Q Consensus 86 VIFD~DGTLiDse~ 99 (203)
++||+||||++...
T Consensus 1 ~l~D~dGvl~~g~~ 14 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE 14 (101)
T ss_dssp EEEESTTTSEETTE
T ss_pred CEEeCccEeEeCCC
Confidence 68999999998643
No 174
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=88.80 E-value=0.9 Score=38.14 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCC---HHHH-HHHHH-cCCCccceEEec
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGF---RHMI-NILNI-LKWDVLKVIQIT 202 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~---~~~i-~~ll~-lGL~~~~~i~it 202 (203)
.++||+.+.++.++++|+++.++||+. .... +.+.. +|++.-..=+||
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iit 66 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIIT 66 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeee
Confidence 358899999999999999999999776 2233 33444 787644444443
No 175
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.60 E-value=0.24 Score=42.30 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.++++.+.++.|++.|++++|+||..+....... .+|+..
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~ 161 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGP 161 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchH
Confidence 4678899999999999999999998766544333 444433
No 176
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=87.94 E-value=0.91 Score=44.81 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
++.|++.+.++.|++.|+++.++|+-....+..+. .+|+..
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999999999 999964
No 177
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=87.53 E-value=0.27 Score=41.51 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.7
Q ss_pred EEEEECCCcccccch
Q 028799 85 AVCFDVDSTVCVDEG 99 (203)
Q Consensus 85 aVIFD~DGTLiDse~ 99 (203)
.++||+||||++++.
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 378999999999764
No 178
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=87.51 E-value=0.27 Score=38.31 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
+.+.||+.++|++|.+ .+.++|.|++....++.++ .++-
T Consensus 35 v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp EEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHHTT
T ss_pred EeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhhhh
Confidence 5689999999999954 5999999999999999998 7764
No 179
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=86.96 E-value=0.55 Score=37.35 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.8
Q ss_pred cEEEEECCCcccccch
Q 028799 84 DAVCFDVDSTVCVDEG 99 (203)
Q Consensus 84 kaVIFD~DGTLiDse~ 99 (203)
|.+.||+||||+.+.+
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 5789999999998654
No 180
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=0.71 Score=40.03 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH--HcCCCc
Q 028799 141 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN--ILKWDV 195 (203)
Q Consensus 141 ~~e~l~~~~~~~~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll--~lGL~~ 195 (203)
+..++.++..+..+.+..|..++++.|+.+++|+.|.|.|.-..++.++ ..++..
T Consensus 124 ~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p 180 (298)
T KOG3128|consen 124 SKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP 180 (298)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc
Confidence 4677888887766789999999999999999999999999999998877 555544
No 181
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=86.68 E-value=0.28 Score=41.19 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=12.5
Q ss_pred EEEECCCcccccch
Q 028799 86 VCFDVDSTVCVDEG 99 (203)
Q Consensus 86 VIFD~DGTLiDse~ 99 (203)
++||+||||++++.
T Consensus 1 ~lfD~DGvL~~~~~ 14 (236)
T TIGR01460 1 FLFDIDGVLWLGHK 14 (236)
T ss_pred CEEeCcCccCcCCc
Confidence 58999999999875
No 182
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=86.48 E-value=1 Score=42.74 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccce
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKV 198 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~ 198 (203)
.+.||+.|-+.+||+.|+++..+|+-..-.+..+. ..|+++|..
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA 491 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA 491 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh
Confidence 47899999999999999999999999999999999 999998753
No 183
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=86.31 E-value=0.6 Score=43.39 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.3
Q ss_pred HhhccC-CcEEEEECCCcccccchHHHHHH
Q 028799 77 LQLWRT-ADAVCFDVDSTVCVDEGIDELAE 105 (203)
Q Consensus 77 ~~~~~~-~kaVIFD~DGTLiDse~~~~la~ 105 (203)
+..|+. .+.|+||+||||+-++.|-.+.+
T Consensus 368 ifvwr~n~kiVVsDiDGTITkSD~~Ghv~~ 397 (580)
T COG5083 368 IFVWRNNKKIVVSDIDGTITKSDALGHVKQ 397 (580)
T ss_pred EEEEeCCCcEEEEecCCcEEehhhHHHHHH
Confidence 344665 46899999999999998744433
No 184
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=85.82 E-value=1.3 Score=44.61 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
-+++||+.+.++.|++.|+++.++|+-....+..+. .+|+..
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 368999999999999999999999999999999999 999853
No 185
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=85.39 E-value=0.47 Score=39.98 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.7
Q ss_pred CcEEEEECCCccccc
Q 028799 83 ADAVCFDVDSTVCVD 97 (203)
Q Consensus 83 ~kaVIFD~DGTLiDs 97 (203)
..+++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 457899999999974
No 186
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=85.28 E-value=1.3 Score=34.35 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.8
Q ss_pred cEEEEECCCcccccch
Q 028799 84 DAVCFDVDSTVCVDEG 99 (203)
Q Consensus 84 kaVIFD~DGTLiDse~ 99 (203)
|.++||+||||+.+..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 5789999999999764
No 187
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=85.25 E-value=0.41 Score=39.82 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.3
Q ss_pred EEEEECCCcccccch
Q 028799 85 AVCFDVDSTVCVDEG 99 (203)
Q Consensus 85 aVIFD~DGTLiDse~ 99 (203)
++++||||||++++.
T Consensus 1 li~~DlDgTLl~~~~ 15 (236)
T TIGR02471 1 LIITDLDNTLLGDDE 15 (236)
T ss_pred CeEEeccccccCCHH
Confidence 378899999999753
No 188
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=84.22 E-value=2.3 Score=43.03 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
++.|++.+.++.|++.|+++.++|+-....+..+. .+|+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~ 619 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL 619 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999 99995
No 189
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=83.95 E-value=1.9 Score=43.35 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
++.|++.+.++.|++.|+++.++|+-....+..+. .+|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 68899999999999999999999999999999999 99996
No 190
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=83.76 E-value=2 Score=37.93 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=29.9
Q ss_pred CCCCCCcHHHHHHHHHHCC-CeEEEEcCCCHHHH
Q 028799 153 PPRLSPGIDELVKKLKANN-KNVYLISGGFRHMI 185 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G-~~vaIVTn~~~~~i 185 (203)
++.++|...++++.+|+.| .+++|+|||..+.+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv 123 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV 123 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHH
Confidence 5789999999999999999 79999999998544
No 191
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=83.34 E-value=1.9 Score=43.56 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
++.|++.+.++.|++.|+++.++|+-....+..+. .+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999 99996
No 192
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=83.33 E-value=2.2 Score=35.83 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
|...++++.++++|++++++|+.+...+..+. .+++...
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p 63 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTP 63 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCC
Confidence 33456666778889999999999988888888 7887654
No 193
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=83.07 E-value=1.9 Score=43.51 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
++.|++.+.++.|++.|+++.++|+-....+..+. .+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 68899999999999999999999999999999999 99996
No 194
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=82.90 E-value=2.1 Score=43.94 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
-++.|++.+.++.|++.|+++.++|+-....+..+. .+|+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999999 99994
No 195
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=82.24 E-value=0.75 Score=36.64 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.8
Q ss_pred cEEEEECCCcccc
Q 028799 84 DAVCFDVDSTVCV 96 (203)
Q Consensus 84 kaVIFD~DGTLiD 96 (203)
++++||.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 6899999999994
No 196
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=82.09 E-value=1.5 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred ccCCcEEEEECCCccccc
Q 028799 80 WRTADAVCFDVDSTVCVD 97 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDs 97 (203)
..++++++||+|+||+.-
T Consensus 38 ~~Gik~li~DkDNTL~~~ 55 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPP 55 (168)
T ss_pred hcCceEEEEcCCCCCCCC
Confidence 467999999999999863
No 197
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=82.00 E-value=3.4 Score=41.78 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=40.4
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
-+|.|++.+.++.|++.|+++.++|+=....+..+. .+|+..-.
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~ 590 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEA 590 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCC
Confidence 489999999999999999999999999999999999 99986544
No 198
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.78 E-value=2.7 Score=35.92 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
.+.+..|++.|++++.+||+.+..+..+. .+|+....
T Consensus 29 ~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p 66 (274)
T COG3769 29 APVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLP 66 (274)
T ss_pred chHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCc
Confidence 45677889999999999999999988888 99988533
No 199
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=81.50 E-value=2.7 Score=37.14 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH---HH-HcCCCc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINI---LN-ILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~---ll-~lGL~~ 195 (203)
.+.||+.|.++.|++.|.++.++||.+...-+. .. ++|+..
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 579999999999999999999999998664432 23 777764
No 200
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=0.9 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMI 185 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i 185 (203)
..+-.++...|..+++. .+++-+|+--+.+.
T Consensus 71 ~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~ 101 (194)
T COG5663 71 ALLAQLVKQVLPSLKEE-HRLIYITARKADLT 101 (194)
T ss_pred HHHHHHHHHHhHHHHhh-ceeeeeehhhHHHH
Confidence 35566788888887765 77777777655543
No 201
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=80.57 E-value=1.9 Score=35.32 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
.+.||+.+.+..|++.|++++++||
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEEC
Confidence 6799999999999999999999999
No 202
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=80.51 E-value=2.6 Score=42.92 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-++.|++.+.++.|+++|+++.++|+-....+..+. .+|+
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi 607 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGI 607 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 378999999999999999999999999999999999 9998
No 203
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=80.46 E-value=3.1 Score=42.67 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-++.|++.+.++.|++.|+++.++||-....+..+. .+|+
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gi 695 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGI 695 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 379999999999999999999999999999999999 9998
No 204
>PLN03017 trehalose-phosphatase
Probab=80.33 E-value=1.5 Score=39.88 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=14.5
Q ss_pred HHHhhccCCc-EEEEECCCccc
Q 028799 75 EVLQLWRTAD-AVCFDVDSTVC 95 (203)
Q Consensus 75 ~~~~~~~~~k-aVIFD~DGTLi 95 (203)
++.......+ ++++|+||||+
T Consensus 102 ~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 102 QIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHHHHhcCCCeEEEEecCCcCc
Confidence 4555555544 55669999999
No 205
>PRK06769 hypothetical protein; Validated
Probab=80.17 E-value=1.1 Score=35.70 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.8
Q ss_pred ccCCcEEEEECCCccccc
Q 028799 80 WRTADAVCFDVDSTVCVD 97 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDs 97 (203)
+.++++++||.||||.-.
T Consensus 1 ~~~~~~~~~d~d~~~~~~ 18 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGD 18 (173)
T ss_pred CCCCcEEEEeCCCcccCC
Confidence 367899999999999443
No 206
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=80.00 E-value=3.4 Score=38.46 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-++.|++.+.++.|++.|+++.++|+.....+..+. .+|+
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 479999999999999999999999999999999988 8886
No 207
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=78.63 E-value=4.2 Score=31.75 Aligned_cols=42 Identities=14% Similarity=-0.004 Sum_probs=34.7
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMI-NILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i-~~ll-~lGL~~ 195 (203)
+..||.+...|..|+++|+.++++|+++...+ ...| .+.+..
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ 86 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc
Confidence 57899999999999999999999999997754 4566 665543
No 208
>PLN02151 trehalose-phosphatase
Probab=78.32 E-value=1.4 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=15.5
Q ss_pred HHHHhhccC-CcEEEEECCCccc
Q 028799 74 KEVLQLWRT-ADAVCFDVDSTVC 95 (203)
Q Consensus 74 ~~~~~~~~~-~kaVIFD~DGTLi 95 (203)
++++..... ..++++|+||||+
T Consensus 88 ~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 88 EEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHhhcCCceEEEEecCccCC
Confidence 455666553 3466779999999
No 209
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=76.96 E-value=1.4 Score=37.05 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=10.5
Q ss_pred EEEEECCCcccc
Q 028799 85 AVCFDVDSTVCV 96 (203)
Q Consensus 85 aVIFD~DGTLiD 96 (203)
+|+.||||||+|
T Consensus 3 li~tDlDGTLl~ 14 (249)
T TIGR01485 3 LLVSDLDNTLVD 14 (249)
T ss_pred EEEEcCCCcCcC
Confidence 577799999997
No 210
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=76.84 E-value=1.6 Score=34.71 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.6
Q ss_pred cEEEEECCCccccc
Q 028799 84 DAVCFDVDSTVCVD 97 (203)
Q Consensus 84 kaVIFD~DGTLiDs 97 (203)
++++||.||||+++
T Consensus 2 ~~~~~d~dg~l~~~ 15 (161)
T TIGR01261 2 KILFIDRDGTLIEE 15 (161)
T ss_pred CEEEEeCCCCcccc
Confidence 68999999999995
No 211
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=76.78 E-value=4.2 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=27.6
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
++.++|.+.++++.++++|+.++|.|||...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3567899999999999999999999999754
No 212
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=76.56 E-value=5.7 Score=32.16 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCCCCcHHHHHHHHHHCCC--eEEEEcCCC-------HHHHHHHH-HcCCCcc
Q 028799 153 PPRLSPGIDELVKKLKANNK--NVYLISGGF-------RHMINILN-ILKWDVL 196 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~--~vaIVTn~~-------~~~i~~ll-~lGL~~~ 196 (203)
...+.|.+.+.++.|++.+. +++|+||+. ...++.+. .+|++.+
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl 110 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVL 110 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEE
Confidence 35688999999999999876 599999983 66677787 8887743
No 213
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.45 E-value=5.1 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
-++.|++...++.||+.|++++++|+-....+..+. +.|++.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~ 764 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDN 764 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcce
Confidence 478999999999999999999999999999999999 999765
No 214
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=75.39 E-value=4.6 Score=32.66 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
..+|. -++.|.+.|++++|+|+.....++.-+ .+|+++++
T Consensus 38 v~DG~--Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~ 78 (170)
T COG1778 38 VRDGH--GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLY 78 (170)
T ss_pred ccCcH--HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceee
Confidence 44553 355667899999999999999998888 99998753
No 215
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=75.08 E-value=4.1 Score=41.76 Aligned_cols=40 Identities=13% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-++.||+.+.++.|++.|+++.++||-..+.+..+. ..|+
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~i 670 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRL 670 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCC
Confidence 479999999999999999999999999999998888 8887
No 216
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=74.59 E-value=1.8 Score=37.53 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.6
Q ss_pred CCcEEEEECCCccccc
Q 028799 82 TADAVCFDVDSTVCVD 97 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDs 97 (203)
+.++++||+||||++-
T Consensus 17 ~~~~~~lDyDGTl~~i 32 (266)
T COG1877 17 RKRLLFLDYDGTLTEI 32 (266)
T ss_pred cceEEEEecccccccc
Confidence 4568999999999885
No 217
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=74.43 E-value=2.9 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=19.3
Q ss_pred HHHHhhccCCcEEEEECCCcccccch
Q 028799 74 KEVLQLWRTADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 74 ~~~~~~~~~~kaVIFD~DGTLiDse~ 99 (203)
.++++ ..+++++++|+||||++...
T Consensus 17 ~~~~~-~~~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 17 IDLLK-KVGIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred HHHHH-HCCCCEEEEecCCccccCCC
Confidence 34555 46899999999999997543
No 218
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=74.13 E-value=8.4 Score=34.12 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFR---HMINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~---~~i~~ll~lGL~~ 195 (203)
++.+.|++.++++.+++.|+.+.|.|||.. +.++.+...|++.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~ 108 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDH 108 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCE
Confidence 356789999999999999999999999963 3444443556653
No 219
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=73.82 E-value=3.7 Score=36.33 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=21.5
Q ss_pred HHHHhhccCCcEEEEECCCcccccch
Q 028799 74 KEVLQLWRTADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 74 ~~~~~~~~~~kaVIFD~DGTLiDse~ 99 (203)
++.-++..+++.++||.||+|+..+.
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~ 38 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEK 38 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCC
Confidence 45566778888999999999999764
No 220
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=73.07 E-value=5.6 Score=31.34 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
.-++++.+.+.++.|++. ..++|+|+-....+..++ ..|++...
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~r 72 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVER 72 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceee
Confidence 357999999999999999 999999999999999988 88886543
No 221
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=71.68 E-value=11 Score=29.97 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHM-INILNILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~-i~~ll~lGL 193 (203)
+.+.|.+.++++.+++.|+.+.|.||+.... ++.++..|+
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~ 113 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGL 113 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCC
Confidence 4567889999999999999999999997543 233335553
No 222
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=71.36 E-value=1.5 Score=40.07 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.4
Q ss_pred HHHHhhccCCcEEEEECCCcccccch
Q 028799 74 KEVLQLWRTADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 74 ~~~~~~~~~~kaVIFD~DGTLiDse~ 99 (203)
.++-.....-+.+.||+||||+|+.+
T Consensus 66 ~~~~~v~~~~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 66 FTLPKVNGGSKIIMFDYDGTLIDTKS 91 (422)
T ss_pred eeccccCCCcceEEEecCCceeecCC
Confidence 45666677788999999999999864
No 223
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.07 E-value=2.9 Score=34.06 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.0
Q ss_pred ccCCcEEEEECCCcccccc
Q 028799 80 WRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse 98 (203)
..+++++++|+|.||+.-+
T Consensus 25 ~~Gikgvi~DlDNTLv~wd 43 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWD 43 (175)
T ss_pred HcCCcEEEEeccCceeccc
Confidence 4568999999999999743
No 224
>PLN02580 trehalose-phosphatase
Probab=69.29 E-value=3 Score=38.16 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=10.8
Q ss_pred cEEEEECCCccccc
Q 028799 84 DAVCFDVDSTVCVD 97 (203)
Q Consensus 84 kaVIFD~DGTLiDs 97 (203)
.+++||+||||..-
T Consensus 120 ~~LfLDyDGTLaPI 133 (384)
T PLN02580 120 IALFLDYDGTLSPI 133 (384)
T ss_pred eEEEEecCCccCCC
Confidence 36667999999753
No 225
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=68.08 E-value=11 Score=31.21 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+.++ ++++|++++++|+.+...+..++ .+++..
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~ 55 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPS 55 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCC
Confidence 6666 68899999999999999999999 888863
No 226
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=68.00 E-value=1.4 Score=36.95 Aligned_cols=39 Identities=13% Similarity=-0.070 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
+|++.++++.|+++|+++ |+||....+..... .+|...+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~ 179 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYY 179 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHH
Confidence 689999999999999997 89999887776555 6665543
No 227
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=67.71 E-value=3.8 Score=31.78 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=13.1
Q ss_pred cEEEEECCCcccccc
Q 028799 84 DAVCFDVDSTVCVDE 98 (203)
Q Consensus 84 kaVIFD~DGTLiDse 98 (203)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999974
No 228
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=66.98 E-value=14 Score=32.96 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=32.9
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFR---HMINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~---~~i~~ll~lGL~~ 195 (203)
++.+.|++.+++++++++|+.+.|.|||.. +.++.+...|++.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~ 117 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDH 117 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCE
Confidence 456789999999999999999999999963 3444443666653
No 229
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=66.45 E-value=10 Score=38.25 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-+..||+++.++.|+..|+++-.||+-.-..++.+. .+|+
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGI 686 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGI 686 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHccc
Confidence 478999999999999999999999999999999999 9998
No 230
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=66.29 E-value=11 Score=37.91 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
-+|.|++.+.++.|+..|+++..+|+-....++.+. ..|+..
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~ 625 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFS 625 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 479999999999999999999999999999999999 999754
No 231
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=65.59 E-value=3.7 Score=36.08 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.2
Q ss_pred CCcEEEEECCCccccc
Q 028799 82 TADAVCFDVDSTVCVD 97 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDs 97 (203)
.+|+++||+|+||+..
T Consensus 2 ~~k~~v~DlDnTlw~g 17 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGG 17 (320)
T ss_pred CeEEEEEcCCCCCCCC
Confidence 4689999999999986
No 232
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=64.54 E-value=6.2 Score=33.33 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHM 184 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~ 184 (203)
+.+.|+..++++.+++.|+++.|-|||....
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 4456899999999999999999999998643
No 233
>PLN03190 aminophospholipid translocase; Provisional
Probab=64.25 E-value=12 Score=39.12 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
-++.||+.+.++.|++.|+++.++||-....+..+. ..|+
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 479999999999999999999999999988888888 7777
No 234
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=63.98 E-value=3.5 Score=34.33 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=7.4
Q ss_pred EEECCCcccccc
Q 028799 87 CFDVDSTVCVDE 98 (203)
Q Consensus 87 IFD~DGTLiDse 98 (203)
+||+||||.+..
T Consensus 1 ~lDyDGTL~p~~ 12 (235)
T PF02358_consen 1 FLDYDGTLAPIV 12 (235)
T ss_dssp EEE-TTTSS---
T ss_pred CcccCCccCCCC
Confidence 689999999864
No 235
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=62.85 E-value=14 Score=30.78 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=27.5
Q ss_pred CCCCCc-HHHHHHHHHHCCCeEEEEcCCCHH--HHHHHH
Q 028799 154 PRLSPG-IDELVKKLKANNKNVYLISGGFRH--MINILN 189 (203)
Q Consensus 154 ~~l~PG-~~elL~~Lk~~G~~vaIVTn~~~~--~i~~ll 189 (203)
+.+.++ +.++++.+|+.|+.++|.|||... ..+.++
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~ 87 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA 87 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH
Confidence 445666 589999999999999999999643 344444
No 236
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=61.80 E-value=5 Score=31.79 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=13.0
Q ss_pred cEEEEECCCcccccc
Q 028799 84 DAVCFDVDSTVCVDE 98 (203)
Q Consensus 84 kaVIFD~DGTLiDse 98 (203)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 468999999999874
No 237
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=60.94 E-value=5.8 Score=31.40 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.7
Q ss_pred CCcEEEEECCCcccccch
Q 028799 82 TADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 82 ~~kaVIFD~DGTLiDse~ 99 (203)
+...+++|+|.||+.+..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 445789999999999864
No 238
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=59.70 E-value=6.7 Score=33.19 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCeEEEE-cCC----------CHH-HHHHHH-HcCCCccce
Q 028799 160 IDELVKKLKANNKNVYLI-SGG----------FRH-MINILN-ILKWDVLKV 198 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIV-Tn~----------~~~-~i~~ll-~lGL~~~~~ 198 (203)
+.++-+.|+..|..+-++ |++ .+. .++.+. ++|++.-.+
T Consensus 133 ~~~i~~~l~~~~l~~~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~v 184 (247)
T PF05116_consen 133 LEEIRARLRQRGLRVNVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQV 184 (247)
T ss_dssp HHHHHHHHHCCTCEEEEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGE
T ss_pred HHHHHHHHHHcCCCeeEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHE
Confidence 445566677788887655 343 222 345666 888765433
No 239
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=59.54 E-value=20 Score=33.04 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEE-cCCC----HHHHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLI-SGGF----RHMINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIV-Tn~~----~~~i~~ll~lGL~~ 195 (203)
++..+|.+.++++.+++.|++++|. ||+. .+.++.+..+|++.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 3567899999999999999999996 9964 34456665666654
No 240
>PLN02382 probable sucrose-phosphatase
Probab=58.84 E-value=5.5 Score=36.59 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.8
Q ss_pred EEEEECCCccccc
Q 028799 85 AVCFDVDSTVCVD 97 (203)
Q Consensus 85 aVIFD~DGTLiDs 97 (203)
+|+-||||||++.
T Consensus 11 lI~sDLDGTLL~~ 23 (413)
T PLN02382 11 MIVSDLDHTMVDH 23 (413)
T ss_pred EEEEcCCCcCcCC
Confidence 4566999999986
No 241
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=56.60 E-value=10 Score=37.89 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=20.2
Q ss_pred CCCChHHHHhhccC--CcEEEEECCCccccc
Q 028799 69 NTLPSKEVLQLWRT--ADAVCFDVDSTVCVD 97 (203)
Q Consensus 69 ~~~~~~~~~~~~~~--~kaVIFD~DGTLiDs 97 (203)
..++-+.+++.++. ..+++||+||||+..
T Consensus 491 ~~l~~~~~~~~y~~a~~rll~LDyDGTL~~~ 521 (797)
T PLN03063 491 LELPEQDVIQQYSKSNNRLLILGFYGTLTEP 521 (797)
T ss_pred CCCCHHHHHHHHHhccCeEEEEecCccccCC
Confidence 34555566666554 458889999999964
No 242
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=56.56 E-value=6 Score=35.60 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.5
Q ss_pred ccCCcEEEEECCCcccccc
Q 028799 80 WRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse 98 (203)
+.+++++-||||.||+.-.
T Consensus 9 l~~i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYK 27 (343)
T ss_pred cccCCEEEECccccccccC
Confidence 5678999999999999854
No 243
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=54.46 E-value=15 Score=32.44 Aligned_cols=31 Identities=42% Similarity=0.602 Sum_probs=27.4
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
++.+.|.+.++++.++++|..+.|.|||...
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 4668899999999999999999999999743
No 244
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=49.23 E-value=10 Score=32.04 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.9
Q ss_pred EEEEECCCcccccc
Q 028799 85 AVCFDVDSTVCVDE 98 (203)
Q Consensus 85 aVIFD~DGTLiDse 98 (203)
.++||+||||+...
T Consensus 13 l~lfdvdgtLt~~r 26 (252)
T KOG3189|consen 13 LCLFDVDGTLTPPR 26 (252)
T ss_pred EEEEecCCcccccc
Confidence 68899999998753
No 245
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=48.21 E-value=31 Score=29.43 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHH----HHHHHcCCCc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMI----NILNILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i----~~ll~lGL~~ 195 (203)
...||+.|.++.|+.++.++--+||...+.- +++.++|++-
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v 67 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV 67 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc
Confidence 4789999999999999999999999876542 2333777753
No 246
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=47.97 E-value=32 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
.+.+.++++.+|+.|+++.|-||+..+
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~ 100 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPK 100 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCH
Confidence 467889999999999999999997653
No 247
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=47.45 E-value=12 Score=31.96 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
-++|+.++++.|+++|+ ++|+||....
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~ 170 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPW 170 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCC
Confidence 47899999999999897 8999998764
No 248
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=47.01 E-value=29 Score=29.77 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCCCcH-HHHHHHHHHCCCeEEEEcCCCH
Q 028799 154 PRLSPGI-DELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 154 ~~l~PG~-~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
+.+.|.. .++++++++.|+++.+.|||..
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 4567775 6999999999999999999963
No 249
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=46.66 E-value=9.8 Score=35.06 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH--Hc--CCCccceEEecC
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN--IL--KWDVLKVIQITS 203 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll--~l--GL~~~~~i~it~ 203 (203)
+-...++..+++.|.++.++||+....+.... ++ ++..++.++||+
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~ 250 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETR 250 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEe
Confidence 33455899999999999999999988887665 55 477888888874
No 250
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=45.87 E-value=41 Score=27.67 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=27.8
Q ss_pred CCCCCcH-HHHHHHHHHCCCeEEEEcCCC----HHHHHHHH
Q 028799 154 PRLSPGI-DELVKKLKANNKNVYLISGGF----RHMINILN 189 (203)
Q Consensus 154 ~~l~PG~-~elL~~Lk~~G~~vaIVTn~~----~~~i~~ll 189 (203)
+.+.|+. .++++.+++.|+++.+.|||. .+.+..++
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll 116 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELL 116 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHH
Confidence 4567774 599999999999999999994 44445554
No 251
>PLN02580 trehalose-phosphatase
Probab=45.81 E-value=31 Score=31.60 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
..+.|++.+.|+.|.+. .+++|||+.....++.++
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 57889999999999988 589999999999988876
No 252
>PLN02151 trehalose-phosphatase
Probab=45.43 E-value=29 Score=31.43 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
..+.|++.+.|+.|. ++.+++|+|+.+...++.++
T Consensus 119 A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 119 AFMSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred ccCCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHc
Confidence 468899999999999 56899999999999888776
No 253
>PLN03017 trehalose-phosphatase
Probab=45.04 E-value=32 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
..+.|+..+.|+.|. +|++++|+|+.....+..+.
T Consensus 132 a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 132 AFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred ccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 368899999999999 78999999999999887765
No 254
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=44.79 E-value=36 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCCCcH-HHHHHHHHHCCCeEEEEcCCCH
Q 028799 154 PRLSPGI-DELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 154 ~~l~PG~-~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
+.+.++. .++++.+++.|+++++.|||..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4466774 5999999999999999999984
No 255
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=44.42 E-value=31 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.0
Q ss_pred cEEEEECCCccc-ccchHHHHHHHcCCCc
Q 028799 84 DAVCFDVDSTVC-VDEGIDELAEFCGAGK 111 (203)
Q Consensus 84 kaVIFD~DGTLi-Dse~~~~la~~~G~~~ 111 (203)
...++|.||+++ ..++..++++.+|...
T Consensus 3 ~V~~~d~~~~~i~~f~S~~eAa~~lg~~~ 31 (53)
T smart00497 3 PVYVYDLDGNLIGEFSSIREAAKYLGISH 31 (53)
T ss_pred cEEEEeCCCCEEEEecCHHHHHHHhCCCH
Confidence 467899999998 5667889999999853
No 256
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=44.14 E-value=14 Score=31.65 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=11.8
Q ss_pred CCcEEEEECCCcccc
Q 028799 82 TADAVCFDVDSTVCV 96 (203)
Q Consensus 82 ~~kaVIFD~DGTLiD 96 (203)
++..|+-|+||||++
T Consensus 6 ~~~lIFtDlD~TLl~ 20 (274)
T COG3769 6 MPLLIFTDLDGTLLP 20 (274)
T ss_pred cceEEEEcccCcccC
Confidence 445566699999999
No 257
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=43.92 E-value=20 Score=25.18 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.0
Q ss_pred CcEEEEECCCcccccchH
Q 028799 83 ADAVCFDVDSTVCVDEGI 100 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~ 100 (203)
.-.++.+=|||.+|+|.+
T Consensus 38 ~~~l~L~eDGT~VddEey 55 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEY 55 (74)
T ss_pred CcEEEEecCCcEEccHHH
Confidence 457889999999998763
No 258
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=43.82 E-value=56 Score=28.09 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCCCCcHHHHHHHHHHCCC-eEEEEcCCCHH--HHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNK-NVYLISGGFRH--MINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~-~vaIVTn~~~~--~i~~ll~lGL~~ 195 (203)
++.+.|++.++++.+++.|+ .+.|.|||... .+..+...|++.
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~ 111 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDR 111 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCE
Confidence 35678899999999999998 99999999643 222222556643
No 259
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=22 Score=30.50 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
..-.+.+.++++.+|+.|+++++.|||+..
T Consensus 95 ~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 95 TLQAEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred hhhHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 345678899999999999999999999854
No 260
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=43.09 E-value=13 Score=28.81 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=16.5
Q ss_pred HHhhccCCcEEEEECCCcc
Q 028799 76 VLQLWRTADAVCFDVDSTV 94 (203)
Q Consensus 76 ~~~~~~~~kaVIFD~DGTL 94 (203)
++..|.-+..|.|||.+||
T Consensus 38 ~~~~~~~P~iV~FDmK~Tl 56 (128)
T PRK13717 38 GIVRLNAPVTAAFNMKQTV 56 (128)
T ss_pred HHhhcCCCeEEEEehHHHH
Confidence 5566788899999999999
No 261
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.87 E-value=22 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.0
Q ss_pred CcEEEEECCCcccccchH
Q 028799 83 ADAVCFDVDSTVCVDEGI 100 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~ 100 (203)
.-.++.+-|||.+|+|.+
T Consensus 40 ~~~lvL~eDGT~Vd~Eey 57 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEF 57 (78)
T ss_pred CcEEEEeCCCCEEccHHH
Confidence 457889999999998864
No 262
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.23 E-value=31 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINI 187 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ 187 (203)
-.+.+.+.++.+|++|.++..+|+.....+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 45778999999999999999999987554443
No 263
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.56 E-value=33 Score=25.08 Aligned_cols=31 Identities=6% Similarity=0.011 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINI 187 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ 187 (203)
.+.+.+.++.++++|.++..+|+.+...+..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 4568888999999999999999986544433
No 264
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.69 E-value=83 Score=27.51 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCCCCcHHHHHHHHHH-CCC-eEEEEcCCCHH--HHHHHHHcCCCc
Q 028799 154 PRLSPGIDELVKKLKA-NNK-NVYLISGGFRH--MINILNILKWDV 195 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~-~G~-~vaIVTn~~~~--~i~~ll~lGL~~ 195 (203)
+.+.|++.++++.+++ .|+ .+.|.||+... .++.+...|++.
T Consensus 70 Pll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~ 115 (334)
T TIGR02666 70 PLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKR 115 (334)
T ss_pred ccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCe
Confidence 5577899999999987 588 89999999643 233332667654
No 265
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=38.45 E-value=8 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.6
Q ss_pred CCChHHHHhhccCCcEEEEECCCccccc
Q 028799 70 TLPSKEVLQLWRTADAVCFDVDSTVCVD 97 (203)
Q Consensus 70 ~~~~~~~~~~~~~~kaVIFD~DGTLiDs 97 (203)
..|++++++++..++ |+.|.|+|.
T Consensus 95 qIPpee~L~l~~r~~----d~~gil~dk 118 (120)
T COG1334 95 QIPPEEALELAARMR----DVIGILFDK 118 (120)
T ss_pred hCChHHHHHHHHHHH----Hhhhheeec
Confidence 789999999998776 888888874
No 266
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=38.35 E-value=19 Score=33.59 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=13.1
Q ss_pred ccCCcEEEEECCCcccccc
Q 028799 80 WRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse 98 (203)
+.+++++-||||-||+.-.
T Consensus 9 l~~i~~iGFDmDyTLa~Y~ 27 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYK 27 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-
T ss_pred cccCCEEEECcccchhhcC
Confidence 5688999999999998753
No 267
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=37.86 E-value=20 Score=29.38 Aligned_cols=17 Identities=35% Similarity=0.646 Sum_probs=14.0
Q ss_pred CcEEEEECCCcccccch
Q 028799 83 ADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~ 99 (203)
.+++++|-||||...-.
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 57999999999987543
No 268
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=37.44 E-value=82 Score=27.69 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCCCCCcHHHHHHHHHHCCC--eEEEEcCCCHH--HHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKANNK--NVYLISGGFRH--MINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~--~vaIVTn~~~~--~i~~ll~lGL~~ 195 (203)
++.+.|++.++++.+++.+. .+.|.|||... .++.+...|++.
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~ 117 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKR 117 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCe
Confidence 35678999999999998764 79999999643 222222667764
No 269
>PRK10671 copA copper exporting ATPase; Provisional
Probab=37.23 E-value=25 Score=35.08 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.7
Q ss_pred HHHhhccCCcEEEEECCCcccccc
Q 028799 75 EVLQLWRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 75 ~~~~~~~~~kaVIFD~DGTLiDse 98 (203)
+.++...+++.++||-+|||+..+
T Consensus 509 ~~le~l~~v~~v~fDKTGTLT~g~ 532 (834)
T PRK10671 509 DALQRASTLDTLVFDKTGTLTEGK 532 (834)
T ss_pred HHHHhhcCCCEEEEcCCCccccCc
Confidence 578999999999999999999875
No 270
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=36.86 E-value=28 Score=27.28 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=32.4
Q ss_pred CCChHHHHhhccCCcEEEEECCCcccccc----hHHHHHHHcCCCcc
Q 028799 70 TLPSKEVLQLWRTADAVCFDVDSTVCVDE----GIDELAEFCGAGKA 112 (203)
Q Consensus 70 ~~~~~~~~~~~~~~kaVIFD~DGTLiDse----~~~~la~~~G~~~~ 112 (203)
.+|..+++.......++=|||+|+=+... +++.+.++||+..+
T Consensus 30 fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L~dp 76 (135)
T PF09828_consen 30 FVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGLDDP 76 (135)
T ss_pred EeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCCCCH
Confidence 34556677778888899999999876543 37788888888643
No 271
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.31 E-value=71 Score=23.47 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
.+.+.+.++.++++|.+++.+|+.. + +..+. ..|.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~-~-l~~~~~~~~~ 91 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG-K-LLEMAREHGV 91 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc-h-HHHHHHHcCC
Confidence 4678888999999999999999754 2 34444 4443
No 272
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=36.26 E-value=27 Score=34.27 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=17.4
Q ss_pred CcEEEEECCCcccccchHHHHH
Q 028799 83 ADAVCFDVDSTVCVDEGIDELA 104 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~~~la 104 (203)
-+.||=|+||||+-++.+-.+.
T Consensus 530 ~kIVISDIDGTITKSDvLGh~l 551 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVL 551 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhh
Confidence 4688899999999998764443
No 273
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=35.72 E-value=23 Score=29.72 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=20.8
Q ss_pred hhhhhccCCCCCCChHHHHhhccCCcEEEEECCCcccc
Q 028799 59 LEASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCV 96 (203)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~kaVIFD~DGTLiD 96 (203)
++.-+.-.|.|..|-+. --..|-||||||+..
T Consensus 40 qq~KEq~~~nN~~PmTG------FE~~v~~D~~GT~m~ 71 (271)
T PF06901_consen 40 QQAKEQTSFNNPEPMTG------FEHTVTFDFQGTKMV 71 (271)
T ss_pred hhhhhhcccCCCCCccc------ceeeEEEeccceEEE
Confidence 44455556677777422 124688999999975
No 274
>COG4275 Uncharacterized conserved protein [Function unknown]
Probab=34.94 E-value=36 Score=26.51 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCChHHHHhhccCCcEEEEECCCcccccc----hHHHHHHHcCCCcc
Q 028799 70 TLPSKEVLQLWRTADAVCFDVDSTVCVDE----GIDELAEFCGAGKA 112 (203)
Q Consensus 70 ~~~~~~~~~~~~~~kaVIFD~DGTLiDse----~~~~la~~~G~~~~ 112 (203)
.+++.+++..-+...++=||+||+-+..- +++.+.++||.+.+
T Consensus 32 ~v~~~~v~~~~~~fgAvpfdi~gv~~th~~e~~sFd~~l~~fgLd~p 78 (143)
T COG4275 32 FVEPAEVLAVGKEFGAVPFDIDGVELTHVGERCSFDTMLAKFGLDGP 78 (143)
T ss_pred eecchhccchhhhcCCcceeecceeEEeeeeeecHHHHHHHhCCCcH
Confidence 45556666666777899999999977542 47788889998754
No 275
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=50 Score=27.46 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
...|++.++++.++++|+++.+=||+...
T Consensus 83 ~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 83 LLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 34569999999999999999999998654
No 276
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=34.37 E-value=47 Score=30.73 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred ccCCcEEEEECCCcccccc
Q 028799 80 WRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse 98 (203)
++++.+|-||||+||..-.
T Consensus 24 l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhcCcEEeeccccchhhhc
Confidence 5678899999999998753
No 277
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=34.26 E-value=1e+02 Score=22.04 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
+...++.+.++++|+.+..+|....+.++.+. ..++.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 34466666777778888888887777666666 55543
No 278
>PLN02382 probable sucrose-phosphatase
Probab=34.12 E-value=92 Score=28.57 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 159 GIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
...++++.++++|+.++++|+.+...+..+. .+++....
T Consensus 33 ~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~ 72 (413)
T PLN02382 33 RFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPD 72 (413)
T ss_pred HHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCC
Confidence 3455557889999999999999988888888 88776544
No 279
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=34.02 E-value=26 Score=25.04 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.3
Q ss_pred CcEEEEECCCcccccchHH
Q 028799 83 ADAVCFDVDSTVCVDEGID 101 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~~ 101 (203)
.-.++.+-|||.+|+|.+.
T Consensus 39 ~~~lvLeeDGT~Vd~EeyF 57 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDFF 57 (81)
T ss_pred ceEEEEecCCCEEccHHHH
Confidence 3578899999999988643
No 280
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=33.79 E-value=84 Score=28.39 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCCCCcHHHHHHHHHHC-CCe-EEEEcCCCH--HHHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKAN-NKN-VYLISGGFR--HMINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~-G~~-vaIVTn~~~--~~i~~ll~lGL~~ 195 (203)
++.+.|++.++++.+++. |++ +.|.|||.. ..+..+...|++.
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~ 162 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTS 162 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCe
Confidence 356788899999999986 875 899999964 2333333666654
No 281
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=33.64 E-value=59 Score=27.40 Aligned_cols=36 Identities=14% Similarity=-0.071 Sum_probs=23.3
Q ss_pred HHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceEEecC
Q 028799 167 LKANNKNVYLISGGFRHMINILN-ILKWDVLKVIQITS 203 (203)
Q Consensus 167 Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i~it~ 203 (203)
....++.++++|+.....+..++ ..++.. .+..|||
T Consensus 31 ~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~-Pd~~I~s 67 (247)
T PF05116_consen 31 QARPEILFVYVTGRSLESVLRLLREYNLPQ-PDYIITS 67 (247)
T ss_dssp HHCCGEEEEEE-SS-HHHHHHHHHHCT-EE--SEEEET
T ss_pred hhCCCceEEEECCCCHHHHHHHHHhCCCCC-CCEEEec
Confidence 34567889999999988888888 777743 4555554
No 282
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=33.50 E-value=45 Score=27.78 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMI 185 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i 185 (203)
+..=+.+++....++|-.++.+|+...--+
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~ 144 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKT 144 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 445567888888899999999999775543
No 283
>PLN02423 phosphomannomutase
Probab=33.49 E-value=70 Score=26.89 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
++.|...+.++.|+++ ++++++|+.....+...+
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 5678889999999976 999999998766554444
No 284
>PRK14129 heat shock protein HspQ; Provisional
Probab=32.97 E-value=39 Score=25.28 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=18.6
Q ss_pred cCCcEEEEECCCcccccchH-HHHHH
Q 028799 81 RTADAVCFDVDSTVCVDEGI-DELAE 105 (203)
Q Consensus 81 ~~~kaVIFD~DGTLiDse~~-~~la~ 105 (203)
-.+++||||+|-+--.++.| ..+++
T Consensus 17 ~~yrGVV~DVDP~fs~~e~w~~~ia~ 42 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEPSPDELAV 42 (105)
T ss_pred cCCCeEEEeeCCCcCCCchhHHhhcc
Confidence 45789999999999877765 34443
No 285
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.26 E-value=46 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINI 187 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ 187 (203)
-.+.+.+.++.+|++|.+++.+|+.+...+..
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 35678899999999999999999977554443
No 286
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=31.96 E-value=32 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.7
Q ss_pred CcEEEEECCCcccccchH
Q 028799 83 ADAVCFDVDSTVCVDEGI 100 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~~ 100 (203)
.-.++.+-|||.+|+|.+
T Consensus 40 ~~~lvL~eDGTeVddEeY 57 (78)
T cd01615 40 PVTLVLEEDGTEVDDEEY 57 (78)
T ss_pred CeEEEEeCCCcEEccHHH
Confidence 346899999999998764
No 287
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.44 E-value=33 Score=24.47 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred cEEEEECCCcccccchH
Q 028799 84 DAVCFDVDSTVCVDEGI 100 (203)
Q Consensus 84 kaVIFD~DGTLiDse~~ 100 (203)
-.++.+=|||.+|+|.+
T Consensus 43 ~~lvL~eDGT~VddEey 59 (80)
T cd06536 43 ITLVLAEDGTIVEDEDY 59 (80)
T ss_pred eEEEEecCCcEEccHHH
Confidence 46889999999998764
No 288
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=31.39 E-value=72 Score=31.22 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=33.3
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
+++.|++.++|+++.+. +.+.|.|=|.+..+..++ -+.
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liD 238 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLID 238 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhC
Confidence 68999999999999855 999999999999998877 443
No 289
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=31.23 E-value=1.1e+02 Score=28.45 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHC--CCeEEEEcCCC--HHHHHHHHHcCCCc
Q 028799 159 GIDELVKKLKAN--NKNVYLISGGF--RHMINILNILKWDV 195 (203)
Q Consensus 159 G~~elL~~Lk~~--G~~vaIVTn~~--~~~i~~ll~lGL~~ 195 (203)
-+.+++..+++. |++++|.|||. .+.++.+..+|++.
T Consensus 96 ~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~ 136 (442)
T TIGR01290 96 KTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH 136 (442)
T ss_pred ccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence 367888888887 89999999997 45566665667663
No 290
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=30.75 E-value=83 Score=33.01 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=36.7
Q ss_pred CCCCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCC
Q 028799 153 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKW 193 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL 193 (203)
+-++-+|+.|.++.|++.|+|+.+.|+--.+.+-.+. .+++
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~L 690 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRL 690 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcC
Confidence 3578999999999999999999999999888888887 7776
No 291
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.66 E-value=53 Score=24.26 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMIN 186 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~ 186 (203)
-.+.+.+.++.+|++|.++..+|+.....+.
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 3577889999999999999999997654443
No 292
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=30.31 E-value=60 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
.-+|...+++++|+++|+++.+..+..-
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4689999999999999999999988753
No 293
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.96 E-value=62 Score=23.50 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINI 187 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ 187 (203)
-.....+.++.+|++|.++.++|+.....+..
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 44667889999999999999999876554433
No 294
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=29.69 E-value=88 Score=24.25 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 157 SPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
..++.++=+.|++.|+++.+..+.+...+..++ .+|+...
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V 92 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAV 92 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEE
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCee
Confidence 445667777788888888888888777777777 7776553
No 295
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.59 E-value=57 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMIN 186 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~ 186 (203)
+.+.++++.++++|.+++++|+.....+.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 56788999999999999999997654443
No 296
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=29.56 E-value=58 Score=28.25 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMI 185 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i 185 (203)
.-+.|.+..|+..|+++.|||+|--.+=
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~G 62 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAFG 62 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhhh
Confidence 3467888999999999999999976553
No 297
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.99 E-value=56 Score=20.52 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
.|+.+.|++.|++.+=||.+.+...+.-+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL 37 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKL 37 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 57888999999999999999888776654
No 298
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=28.51 E-value=21 Score=24.97 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=8.7
Q ss_pred EEEECCCccc
Q 028799 86 VCFDVDSTVC 95 (203)
Q Consensus 86 VIFD~DGTLi 95 (203)
+=|||+|.++
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 299
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=28.22 E-value=1.4e+02 Score=26.03 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCCCCCcHHHHHHHHHHC--CCeEEEEcCCCH--HHHHHHHHcCCCc
Q 028799 153 PPRLSPGIDELVKKLKAN--NKNVYLISGGFR--HMINILNILKWDV 195 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~--G~~vaIVTn~~~--~~i~~ll~lGL~~ 195 (203)
++.+.|++.++++.+++. +.++.|.||+.. ..++.+...|++.
T Consensus 75 EPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~ 121 (331)
T PRK00164 75 EPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDR 121 (331)
T ss_pred CCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCE
Confidence 355678999999999987 368999999953 2333333566653
No 300
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=27.93 E-value=1.8e+02 Score=20.97 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
+....|++.|+++++|+-+..+.++... ..+++.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~ 38 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPF 38 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCC
Confidence 4467788899999999999986688877 666654
No 301
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.90 E-value=64 Score=25.42 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHM 184 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~ 184 (203)
-.+.+.+.++.+|++|.++..+|+.....
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 45789999999999999999999875443
No 302
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.80 E-value=1.4e+02 Score=22.15 Aligned_cols=43 Identities=9% Similarity=-0.177 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHCCC---eEEEEcCCCHHHHHHHHHcCCCccce
Q 028799 156 LSPGIDELVKKLKANNK---NVYLISGGFRHMINILNILKWDVLKV 198 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~---~vaIVTn~~~~~i~~ll~lGL~~~~~ 198 (203)
..+.+.++++.|++.|. ++.+.-+.+.+..+.+..+|++.++.
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 45567888888888855 33333334544444444888887654
No 303
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=27.41 E-value=61 Score=26.78 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCCCcHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHH
Q 028799 154 PRLSPGIDELVKKLKANN-KNVYLISGGFRHMINILN 189 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G-~~vaIVTn~~~~~i~~ll 189 (203)
..+.|++.++|+.|.+.. ..++|+|+......+.+.
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~ 54 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFG 54 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhc
Confidence 578899999999999874 479999999988755543
No 304
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=1.2e+02 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCCCCCcHHHHHHHHHHCC-CeEEEEcCCCHHHHHHH
Q 028799 153 PPRLSPGIDELVKKLKANN-KNVYLISGGFRHMINIL 188 (203)
Q Consensus 153 ~~~l~PG~~elL~~Lk~~G-~~vaIVTn~~~~~i~~l 188 (203)
.-+++||+..+++.|.+.| .++.-+||++...-..+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L 230 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTL 230 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHH
Confidence 3579999999999999998 99999999998765433
No 305
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.10 E-value=67 Score=21.50 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=20.0
Q ss_pred CCcHHHHHHHHHHCCCeEEEEc
Q 028799 157 SPGIDELVKKLKANNKNVYLIS 178 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVT 178 (203)
.+.+.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5778999999999999999998
No 306
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.10 E-value=72 Score=27.61 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGG 180 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~ 180 (203)
..+|+..+++++|+++|+++.+...-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 56899999999999999999987654
No 307
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.95 E-value=1.2e+02 Score=20.87 Aligned_cols=39 Identities=8% Similarity=-0.119 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHH-HcCCCccc
Q 028799 159 GIDELVKKLKAN--NKNVYLISGGFRHMINILN-ILKWDVLK 197 (203)
Q Consensus 159 G~~elL~~Lk~~--G~~vaIVTn~~~~~i~~ll-~lGL~~~~ 197 (203)
...++++.++.. +.++.++|+........-. ..|...|.
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 456888888875 4899999977765444434 88877654
No 308
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=26.92 E-value=63 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 159 GIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
.+-++++...+.|++++|||++. .+..++
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt--~ar~~i 102 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGT--LARKII 102 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChH--HHHHHH
Confidence 57788888899999999999985 344444
No 309
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.52 E-value=68 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCC
Q 028799 158 PGIDELVKKLKANNKNVYLISGGF 181 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~ 181 (203)
....+.+..|+++|+++.|||||-
T Consensus 31 ~~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 31 EELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHHhCCCEEEEEccch
Confidence 344677889999999999999984
No 310
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=26.28 E-value=59 Score=23.59 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
.++.++..+++..+.+.+++|||..
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~ 92 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKE 92 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCe
Confidence 5889999999999999999999964
No 311
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=25.86 E-value=32 Score=29.95 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.0
Q ss_pred EEEEECCCcccccch
Q 028799 85 AVCFDVDSTVCVDEG 99 (203)
Q Consensus 85 aVIFD~DGTLiDse~ 99 (203)
=|.||.|++|++.++
T Consensus 123 RIAFDgDaVLfsDes 137 (264)
T PF06189_consen 123 RIAFDGDAVLFSDES 137 (264)
T ss_pred EEEEcCCeEeecCcc
Confidence 389999999999765
No 312
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.82 E-value=64 Score=22.81 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=13.9
Q ss_pred CcEEEEECCCcccccch
Q 028799 83 ADAVCFDVDSTVCVDEG 99 (203)
Q Consensus 83 ~kaVIFD~DGTLiDse~ 99 (203)
.-.++.+=|||.+|+|.
T Consensus 40 ~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp TCEEEETTTTCBESSCH
T ss_pred CcEEEEeCCCcEEccHH
Confidence 44578899999999875
No 313
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=24.72 E-value=1.6e+02 Score=25.06 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCCcHHHHHHHHHHC-CCeEEEEcCC--CHHHHHHHH-HcCCCcc
Q 028799 154 PRLSPGIDELVKKLKAN-NKNVYLISGG--FRHMINILN-ILKWDVL 196 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~-G~~vaIVTn~--~~~~i~~ll-~lGL~~~ 196 (203)
+.+.|...++++..++. |+++.+.||+ ........+ ..|++.+
T Consensus 76 Pll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v 122 (347)
T COG0535 76 PLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYV 122 (347)
T ss_pred ccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEE
Confidence 45669999999999966 9999999999 332333333 6666653
No 314
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=24.34 E-value=1.8e+02 Score=26.31 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhCC--------CCCCCcHHHHHHHHHHCCCeEEEE-cCCCHHHHHHHHHcCCC
Q 028799 141 SLSQVQDFLEKRP--------PRLSPGIDELVKKLKANNKNVYLI-SGGFRHMINILNILKWD 194 (203)
Q Consensus 141 ~~e~l~~~~~~~~--------~~l~PG~~elL~~Lk~~G~~vaIV-Tn~~~~~i~~ll~lGL~ 194 (203)
+.++++++++... .+-.||..+++++|+++|+.+.+- |++..+.+......|..
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 4566666665311 234689999999999999999987 66666666655455654
No 315
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.30 E-value=81 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMIN 186 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~ 186 (203)
-.+.+.++++.++++|.++..+|+.....+.
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 4577889999999999999999997654433
No 316
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=24.29 E-value=77 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
-+--.+.+++.++-+.|.+++|||||..
T Consensus 81 ~~akd~qq~~~Yav~~Gv~~~iVtnGrv 108 (284)
T COG2810 81 NPAKDVQQLAKYAVDKGVEVGIVTNGRV 108 (284)
T ss_pred CchHHHHHHHHHHHhcCcEEEEEeCCeE
Confidence 3455678999999999999999999954
No 317
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.15 E-value=77 Score=25.49 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMIN 186 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~ 186 (203)
-.+.+.+.++.+|++|.+++.+|+.....+.
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 4678899999999999999999997654433
No 318
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=24.15 E-value=48 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.3
Q ss_pred cEEEEECCCcccccchH
Q 028799 84 DAVCFDVDSTVCVDEGI 100 (203)
Q Consensus 84 kaVIFD~DGTLiDse~~ 100 (203)
-.++.+-|||.+|+|.+
T Consensus 40 ~~lvL~eDGT~Vd~Eey 56 (79)
T cd06538 40 SSLVLDEDGTGVDTEEF 56 (79)
T ss_pred cEEEEecCCcEEccHHH
Confidence 45889999999998764
No 319
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=24.09 E-value=1.1e+02 Score=30.57 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHH-HcC
Q 028799 155 RLSPGIDELVKKLKAN-NKNVYLISGGFRHMINILN-ILK 192 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~-G~~vaIVTn~~~~~i~~ll-~lG 192 (203)
.+.|++.++|+.|.+. +-.++|+|+.....++.++ ..+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 3667899999999876 7899999999999999988 544
No 320
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=23.56 E-value=1.2e+02 Score=21.13 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCeEEEEcCC
Q 028799 161 DELVKKLKANNKNVYLISGG 180 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~ 180 (203)
.++++.|.+.|++++ +|.+
T Consensus 3 ~~~~~~l~~lG~~i~-AT~g 21 (90)
T smart00851 3 VELAKRLAELGFELV-ATGG 21 (90)
T ss_pred HHHHHHHHHCCCEEE-EccH
Confidence 344555555555553 4444
No 321
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.24 E-value=90 Score=27.47 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
..-+|+..++++.|+++|+++.+...
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 35689999999999999999987654
No 322
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=22.66 E-value=2.3e+02 Score=19.96 Aligned_cols=37 Identities=14% Similarity=-0.065 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc-cceE
Q 028799 161 DELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV-LKVI 199 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~-~~~i 199 (203)
.++.+.++.+|.++.++--. ..+..++ ..|++. .+.+
T Consensus 63 ~~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~~~~~~~ 101 (109)
T cd07041 63 LRLARALRLLGARTILTGIR--PEVAQTLVELGIDLSGIRT 101 (109)
T ss_pred HHHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCChhhcee
Confidence 45667778889999888543 3445666 888866 4443
No 323
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.64 E-value=98 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEc
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLIS 178 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVT 178 (203)
..-+|...+++++|+++|+++++..
T Consensus 62 ~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 62 PERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 3568999999999999999988755
No 324
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.61 E-value=1.8e+02 Score=24.51 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCeEEEEc----CCCHHHHHHHHHcCCCc
Q 028799 160 IDELVKKLKANNKNVYLIS----GGFRHMINILNILKWDV 195 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVT----n~~~~~i~~ll~lGL~~ 195 (203)
..++++.++++|+++.+=| +...+.++.+..+|++.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~Gvdg 251 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGVDC 251 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCCCE
Confidence 4688999999999999998 55556666655788764
No 325
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.59 E-value=91 Score=24.17 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMI 185 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i 185 (203)
-.+.+.+.++.+|++|.++..+|+.....+
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 357788999999999999999999765443
No 326
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=22.57 E-value=1e+02 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCc
Q 028799 158 PGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDV 195 (203)
Q Consensus 158 PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~ 195 (203)
.++.++=+.|++.|.++.+..+.+...+..++ .+++..
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~ 99 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRT 99 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCE
Confidence 34445555566666666666665555555555 555544
No 327
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.49 E-value=1.3e+02 Score=26.09 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCcc
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVL 196 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~ 196 (203)
.-.||=...-+.|++.|+|+.|+|.++..-...-+ ..|+-.+
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYI 113 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYI 113 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEE
Confidence 45677677777778899999999999987766666 7777553
No 328
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.78 E-value=1e+02 Score=27.00 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
...+|+..++++.|+++|+++.+..+
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 35789999999999999999987444
No 329
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.67 E-value=97 Score=24.80 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCC
Q 028799 160 IDELVKKLKANNKNVYLISGG 180 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~ 180 (203)
+++++..|+++|++++++=-.
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEec
Confidence 467888999999999988443
No 330
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=21.48 E-value=1.3e+02 Score=23.02 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
.+.+|...++++.++++|.+++++.-+..
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s~~ 86 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQSLK 86 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcchhh
Confidence 36679999999999999999999988765
No 331
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.41 E-value=1.1e+02 Score=26.72 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEcCC
Q 028799 155 RLSPGIDELVKKLKANNKNVYLISGG 180 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~G~~vaIVTn~ 180 (203)
.-+|+..+++++|+++|+++++..+.
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 46899999999999999999886543
No 332
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.20 E-value=1.1e+02 Score=21.14 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCH
Q 028799 159 GIDELVKKLKANNKNVYLISGGFR 182 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~ 182 (203)
...++++.|+++|+++.+.|+...
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCHH
Confidence 388999999999999998887643
No 333
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.15 E-value=74 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcC
Q 028799 157 SPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 157 ~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
.|-+.+.+++.|++|.+++.+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 47889999999999999999885
No 334
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=20.94 E-value=1.8e+02 Score=24.57 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCC
Q 028799 156 LSPGIDELVKKLKANNKNVYLISGGFRHMINILN-ILKWD 194 (203)
Q Consensus 156 l~PG~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~ 194 (203)
+.+++.-.+..|.+++..+++||-++.+.+.... ..|+.
T Consensus 91 ~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~ 130 (211)
T PF05988_consen 91 WADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWT 130 (211)
T ss_pred hHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCC
Confidence 4455557788999999999999999999999988 88886
No 335
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=20.89 E-value=2.4e+02 Score=19.77 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHH-HcCCCccceE
Q 028799 162 ELVKKLKANNKNVYLISGGFRHMINILN-ILKWDVLKVI 199 (203)
Q Consensus 162 elL~~Lk~~G~~vaIVTn~~~~~i~~ll-~lGL~~~~~i 199 (203)
.+.+.++++|.++.++.-. ..+..++ ..|+...+.+
T Consensus 62 ~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~i 98 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCNVS--PAVKRLFELSGLFKIIRI 98 (106)
T ss_pred HHHHHHHHcCCEEEEEeCC--HHHHHHHHHhCCceEEEE
Confidence 5667788899999987543 4556777 8888776544
No 336
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=20.78 E-value=1.1e+02 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
..-+|+.+++++.|+++|+++++..+
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 35789999999999999999998754
No 337
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=20.66 E-value=65 Score=27.99 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.6
Q ss_pred ccCCcEEEEECCCcccccc
Q 028799 80 WRTADAVCFDVDSTVCVDE 98 (203)
Q Consensus 80 ~~~~kaVIFD~DGTLiDse 98 (203)
-.+.+.++.|+|+||+.+.
T Consensus 86 ~~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSS 104 (262)
T ss_pred cCCCceEEEeCCCcccccc
Confidence 3456789999999998875
No 338
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.54 E-value=2.6e+02 Score=20.93 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHHHC--CCeEEEEcCCCH---HHHHHHHHcCCCc
Q 028799 155 RLSPGIDELVKKLKAN--NKNVYLISGGFR---HMINILNILKWDV 195 (203)
Q Consensus 155 ~l~PG~~elL~~Lk~~--G~~vaIVTn~~~---~~i~~ll~lGL~~ 195 (203)
...+...++++.+++. ++++.+.||+.. +.++.+...|+..
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~ 101 (204)
T cd01335 56 LLYPELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDG 101 (204)
T ss_pred CccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCce
Confidence 3455888999999998 899999999975 3444444555543
No 339
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=20.46 E-value=98 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 028799 159 GIDELVKKLKANNKNVYLISGGFRHMINILN 189 (203)
Q Consensus 159 G~~elL~~Lk~~G~~vaIVTn~~~~~i~~ll 189 (203)
.+.+-|..|+++|+++.|||+|--..-.+.+
T Consensus 35 ~l~~~i~~l~~~g~~vilVssGAv~~G~~~l 65 (284)
T cd04256 35 SIVEQVSELQSQGREVILVTSGAVAFGKQRL 65 (284)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCcHHhChHHh
Confidence 3556677888999999999998766555544
No 340
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.45 E-value=1.2e+02 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCCCCcHHHHHHHHHHCCCeEEEEcC
Q 028799 154 PRLSPGIDELVKKLKANNKNVYLISG 179 (203)
Q Consensus 154 ~~l~PG~~elL~~Lk~~G~~vaIVTn 179 (203)
...+|...++++.|+++|+++++..+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 35788999999999999999988765
No 341
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=20.06 E-value=1.3e+02 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHH
Q 028799 160 IDELVKKLKANNKNVYLISGGFRH 183 (203)
Q Consensus 160 ~~elL~~Lk~~G~~vaIVTn~~~~ 183 (203)
+.++.+.|+++|+.+.+++.+...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 467889999999999999887544
No 342
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=20.06 E-value=2.4e+02 Score=22.22 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHcCCCc
Q 028799 161 DELVKKLKANNKNVYLISGGF-RHMINILNILKWDV 195 (203)
Q Consensus 161 ~elL~~Lk~~G~~vaIVTn~~-~~~i~~ll~lGL~~ 195 (203)
.++++.+++.|+++.+=|-.. ...++.++.+|++.
T Consensus 139 ~~~v~~~~~~g~~v~~wtvn~~~~~~~~l~~~Gvd~ 174 (179)
T cd08555 139 TELIASANKLGLLSRIWTVNDNNEIINKFLNLGVDG 174 (179)
T ss_pred HHHHHHHHHCCCEEEEEeeCChHHHHHHHHHcCCCE
Confidence 688999999999999999887 77777666888765
Done!