BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028800
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 152/195 (77%), Gaps = 5/195 (2%)
Query: 9 NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNY 68
NQ+ LKFTSK L++Q++K E+ EKA+K+K+KKAIE+GNMDGARIYA+N+IR++ + +NY
Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62
Query: 69 LRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNM 128
LRLASR+DAV +R++T +M ++ SMANIVKS+E S+ +L+K+++ MD FE+QF ++
Sbjct: 63 LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122
Query: 129 EVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVD 188
+VQ+ ++E+AM +T+LSTP +V+ L+ QVAD++GL +VG+ +A P+++ ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGL--NVGMQMGSA---PSEKVQQGE 177
Query: 189 EDDLSRRLAELKARG 203
D+L+ RL LK +
Sbjct: 178 TDELTERLNRLKQKN 192
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
Query: 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
+ LKFT+K L++ A+K EK+ KAE+ KVKKA+ + N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V
Sbjct: 65 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + E
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184
Query: 190 DDLSRRLAELK 200
D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
Query: 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
+ LKFT+K L++ A+K EK+ KAE+ KVKKA+ + N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V
Sbjct: 65 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + E
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184
Query: 190 DDLSRRLAELK 200
D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 135/195 (69%), Gaps = 7/195 (3%)
Query: 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
+ LKFTSK L+R A+K EK+ K+E+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLR 64
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+ASR+DAV +++ T M + K+M + K+L+ +L++ +LQK+S MD FE Q N++V
Sbjct: 65 MASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDV 124
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA-----VPTKQQE 185
ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV L Q A A + QE
Sbjct: 125 HTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQE 184
Query: 186 KVDEDDLSRRLAELK 200
K ED LSRRLA L+
Sbjct: 185 K--EDQLSRRLAALR 197
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
Query: 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
+ LKFT+K L++ A+K EK+ KAE+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLR 64
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+ASR+DAV +++ T M + K+MA + K+L+ +L+ +LQK+S MD FE+Q N++V
Sbjct: 65 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDV 124
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + E
Sbjct: 125 HTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE 184
Query: 190 DDLSRRLAELK 200
D LSRRLA L+
Sbjct: 185 DQLSRRLAALR 195
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 133/191 (69%), Gaps = 1/191 (0%)
Query: 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLR 70
+ LKFT+K L++ A+K EK+ E+ KVKKA+++ N++ AR+YAEN+IRK+ E +N+LR
Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLR 64
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+ASR+DAV +++ T M + K+MA + K+L+ +L++ +LQK+S MD F++Q N++V
Sbjct: 65 MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDV 124
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDE 189
ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV L Q P + + + E
Sbjct: 125 HTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQE 184
Query: 190 DDLSRRLAELK 200
D LSRRLA L+
Sbjct: 185 DQLSRRLASLR 195
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 9/205 (4%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N E L Q LKF +KSL +Q+ K KEE+AE+ KVKKAI KGN + ARIYA N+IR
Sbjct: 1 MSNLEASLFQ---LKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
K+ E +N L+L+SR+DAV +RL T M ++ +MA +V+ ++ ++ T NL+ +S+ MD
Sbjct: 58 KQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAA 176
FE QF ++ VQ +M AM T++ TP+ +V+ LMQ VAD+ GLE ++ L PAA
Sbjct: 118 FEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA 177
Query: 177 HAVPTKQQEKVDEDDLSRRLAELKA 201
+VPT V++D+L RL L++
Sbjct: 178 -SVPTP-AAPVEDDNLQERLRALRS 200
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 147/191 (76%), Gaps = 1/191 (0%)
Query: 10 QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69
+ +LKF +K LQR ++KC+KEEKAEK+KVKKAI+KGNM+ ARI+AEN+IR++ + +N+L
Sbjct: 7 HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFL 66
Query: 70 RLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
R+++R+DAV AR+ T M + KSMA +VK ++++L + NL+K+S M+ FE+QF ++
Sbjct: 67 RMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLD 126
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDE 189
VQ ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ +V T ++
Sbjct: 127 VQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTS-VASAEQ 185
Query: 190 DDLSRRLAELK 200
D+LS+RLA+L+
Sbjct: 186 DELSQRLAKLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N EK + +LKF +K L R A+KC+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD
Sbjct: 58 QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 149 bits (377), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 148/200 (74%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N EK + +LKF +K L R +++C+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD
Sbjct: 58 QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 147/200 (73%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N EK + +LKF +K L R A+KC+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD
Sbjct: 58 QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 147/200 (73%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N EK + +LKF +K L R ++KC+KEEKAEK K+KKAI+KGNM+ ARI+AEN+IR
Sbjct: 1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD
Sbjct: 58 QKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASAEQDELSQRLARLR 196
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 145/200 (72%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M N EK + +LKF +K L R A+KC+KEEKAEK K+KKAI+KGN + ARI+AEN+IR
Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD
Sbjct: 58 QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
++D+LS+RLA L+
Sbjct: 178 AS-VASTEQDELSQRLARLR 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 145/200 (72%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M + EK + +LKF +K L R A+KCEKEEK EK K+KKAI+KGN + ARI+AEN+IR
Sbjct: 1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD
Sbjct: 58 QKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASTEQDELSQRLARLR 196
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 145/200 (72%), Gaps = 4/200 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR 60
M + EK + +LKF +K L R A+KCEKEEK EK K+KKAI+KGN + ARI+AEN+IR
Sbjct: 1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIR 57
Query: 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDS 120
++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD
Sbjct: 58 QKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDK 117
Query: 121 FEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ +V
Sbjct: 118 FEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVG 177
Query: 181 TKQQEKVDEDDLSRRLAELK 200
T ++D+LS+RLA L+
Sbjct: 178 TS-VASTEQDELSQRLARLR 196
>sp|P69771|DID2_YEAST Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DID2 PE=1
SV=1
Length = 204
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 118/200 (59%), Gaps = 9/200 (4%)
Query: 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM 66
L N + LKFTSK LQ+QA K KEEK E K+K+A+ + N D +RIYA N+IRK+ E++
Sbjct: 9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERL 67
Query: 67 NYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFV 126
L+LASR+D+V +R+ T M ++ SM + K ++ +L NLQ+++ MD FE+QF
Sbjct: 68 QLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFE 127
Query: 127 NMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSV-----GLPQPAAHAVPT 181
+++ E S ++ +V+ LM +VAD+ G+E+ +P+ A V
Sbjct: 128 DLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIKAKEVNV 187
Query: 182 KQQEKVDEDDLSRRLAELKA 201
++ ED L++RL L+
Sbjct: 188 DDEK---EDKLAQRLRALRG 204
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK ++++KK + GN D R+ A+ ++ R ++ ++
Sbjct: 20 ELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVS 79
Query: 73 SRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQA 132
S++ ++ + + + +M+ K++++ + QK +TM +F+K+ + ME+
Sbjct: 80 SKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTE 139
Query: 133 EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK---V 187
E + + S E E ++ QV D+ G+E+S + + AA +P+ K +
Sbjct: 140 EMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSSGI 199
Query: 188 DEDDLSRRLAEL 199
++++ R+L L
Sbjct: 200 SDEEIERQLKAL 211
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK ++++KK + GN D R+ A+ ++ R ++ ++
Sbjct: 20 ELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVS 79
Query: 73 SRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQA 132
S++ ++ + + + +M+ K++++ + QK +TM +F+K+ + ME+
Sbjct: 80 SKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTD 139
Query: 133 EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK---V 187
E + + S E E ++ QV D+ G+E+S + + AA +P+ K +
Sbjct: 140 EMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGI 199
Query: 188 DEDDLSRRLAEL 199
++++ R+L L
Sbjct: 200 SDEEIERQLKAL 211
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 3/175 (1%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L + + + R+ + +EK L +KK ++G M+ A+I A++ +R R + +
Sbjct: 20 NLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMK 79
Query: 73 SRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQA 132
++L AV R+ T + ++M + K++ + NL + ++ M FE+Q M+++
Sbjct: 80 TQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKE 139
Query: 133 EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS---VGLPQPAAHAVPTKQQ 184
E M M E + ++ QV D+ G++++ V P +V +K Q
Sbjct: 140 EMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVASKHQ 194
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK +L++KK + GN + R+ A+ + R ++ ++
Sbjct: 20 ELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +M+ K++++ + QK +TM +F+K+ + ME
Sbjct: 80 SKVTSMSTQTKVMNSQMKMAG---AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKME 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK- 186
+ E + + S E E ++ QV D+ G+E+S + + AA ++P+ K
Sbjct: 137 MTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
Query: 187 -VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 197 TISDEEIERQLKAL 210
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK +L++KK + GN + R+ A+ + R ++ ++
Sbjct: 20 ELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +M+ K++++ + QK +TM +F+K+ + ME
Sbjct: 80 SKVTSMSTQTKVMNSQMKMAG---AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKME 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK- 186
+ E + + S E E ++ QV D+ G+E+S + + AA ++P+ K
Sbjct: 137 MTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKS 196
Query: 187 -VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 197 TISDEEIERQLKAL 210
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ ++R+ + + +EK ++KK ++G M ++ A++ IR R + + +L S+L V
Sbjct: 28 REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESA 138
R+ T + ++M + K++ NL + + M FE+Q ME+ +E M A
Sbjct: 88 SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147
Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVS---VGLPQPAAHAVP 180
+ + E E L+ QV D+ G++++ V P A AVP
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAP-SGAVAVP 191
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T + + R EK+EK ++++KK + GN D ++ A+ ++ R ++ ++
Sbjct: 20 ELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +MA K++++ + +K +T+ +F+K+ M+
Sbjct: 80 SKVTSMSTQTKLMNSQMKMAG---AMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMD 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEKV 187
+ E M + S E E ++ QV D+ G+E+S + AA P+ K
Sbjct: 137 MTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKA 196
Query: 188 D---EDDLSRRLAEL 199
D ++D+ R+L L
Sbjct: 197 DGISDEDIERQLKAL 211
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 100/196 (51%), Gaps = 5/196 (2%)
Query: 9 NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNY 68
+Q +LK +++ R EK+EK ++++KK + GN D ++ A+ ++ R ++
Sbjct: 16 DQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRT 75
Query: 69 LRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNM 128
++S++ ++ + + + +M+ K++++ + QK +TM +F+K+ + M
Sbjct: 76 YAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKM 135
Query: 129 EVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ--PAAHAVPTKQQEK 186
E+ E + + S E E ++ QV D+ G+E+S + + AA +P+ K
Sbjct: 136 EMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASK 195
Query: 187 ---VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 196 STGISDEEIERQLKAL 211
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ +K E++EK +KK ++G MD +I A++ +R R ++ + + + AV
Sbjct: 27 RELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++AT N L ++ + M FEKQ M+++ E
Sbjct: 87 SLKIQT----LKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEM 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
M A+ + E E ++++ QV D+ GL ++
Sbjct: 143 MNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLT 176
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK +L++KK + GN + ++ A+ + R ++ ++
Sbjct: 20 ELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +M+ K++++ + QK +TM +F+K+ + ME
Sbjct: 80 SKVTSMSTQTKVMNSQMKMAG---AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKME 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK- 186
+ E + + S E E ++ QV D+ G+E+S + + AA ++P+ K
Sbjct: 137 MTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
Query: 187 -VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 197 TISDEEIERQLKAL 210
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+EK +L++KK + GN + ++ A+ + R ++ ++
Sbjct: 20 ELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +M+ K++++ + QK +TM +F+K+ + ME
Sbjct: 80 SKVTSMSTQTKVMNSQMKMAG---AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKME 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK- 186
+ E + + S E E ++ QV D+ G+E+S + + AA ++P+ K
Sbjct: 137 MTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
Query: 187 -VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 197 TISDEEIERQLKAL 210
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ ++ E++EK +KK ++G MD +I A++ +R R ++ + + + AV
Sbjct: 27 RDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++AT N L ++ + M FE+Q M+++ E
Sbjct: 87 SLKIQT----LKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEM 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
M A+ + E E ++++ QV D+ GL +S
Sbjct: 143 MNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLS 176
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
+L+ T +++ R EK+E+ +L++KK + GN + ++ A+ ++ R ++ ++
Sbjct: 20 ELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVS 79
Query: 73 SRLDAVVAR---LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129
S++ ++ + +++Q KM +M+ K++++ + QK +TM +F+K+ + ME
Sbjct: 80 SKVTSMSTQTKVMNSQMKMAG---AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKME 136
Query: 130 VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQP--AAHAVPTKQQEK- 186
+ E + + S E E ++ QV D+ G+E+S + + AA +P+ K
Sbjct: 137 MTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKA 196
Query: 187 --VDEDDLSRRLAEL 199
+ ++++ R+L L
Sbjct: 197 STISDEEIERQLKAL 211
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + R+ +K E++EK +KK ++G MD +I A++ +R R ++ + + + AV
Sbjct: 27 REMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++AT N L ++ + M FEKQ M+++ E
Sbjct: 87 SLKIQT----LKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEM 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
M A+ + E E ++++ QV D+ GL ++
Sbjct: 143 MNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLT 176
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ +K E +EK +KK ++G MD RI A++ +R R ++ + + + AV
Sbjct: 27 RELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++ T N L ++ + M FE+Q M+++ E
Sbjct: 87 SLKIQTLKS----NNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEM 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
M A+ + E E ++++ QV D+ GL ++
Sbjct: 143 MNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLT 176
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 18 SKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNY------LR- 70
++ ++++ + EEK L++K+ + GN +I A IR R + N +R
Sbjct: 25 TRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRG 84
Query: 71 LASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEV 130
+A+ A+ A A M K+MA + K+++ + K ++ M F+KQ M++
Sbjct: 85 IATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPA-------KQAKVMREFQKQSAQMDM 137
Query: 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDE- 189
E M ++ + E E L QV D+ G++++ L + K+ E V
Sbjct: 138 TTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSS 197
Query: 190 --DDLSRRLAELK 200
D+L +RLA L+
Sbjct: 198 GIDELEKRLAALR 210
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ +K E +EK +KK ++G MD RI A++ +R R ++ + + + AV
Sbjct: 27 RELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++ T N L ++ + M FE+Q M+++ E
Sbjct: 87 SLKIQT----LKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEM 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
M A+ + E E ++++ QV D+ GL ++
Sbjct: 143 MNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLT 176
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ K ++ E+A ++K + + GN ARI A + +R R + + ++L A+
Sbjct: 30 RELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAI 89
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESA 138
RL T + +SM + L + N+ M+ FE++ ME + E ++
Sbjct: 90 SLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDEN 149
Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAH--AVPTKQQEKVDEDDLSRRL 196
M + E + +V D+ G+++S GLP A VP E ED+L RL
Sbjct: 150 MDDALEEDDEEEADELV-NKVLDEIGVDLSQGLPDAATQIGTVP----ELKTEDNLQARL 204
Query: 197 AELKAR 202
EL R
Sbjct: 205 DELAKR 210
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ L R+ +K E +EK + +KK ++G MD +I A++ +R R ++ + + + AV
Sbjct: 27 RELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAV 86
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGN----LQKMSETMDSFEKQFVNMEVQAEF 134
++ T N SMA +K + ++AT N L ++ + M FEKQ M+++ E
Sbjct: 87 SLKIQTLKS----NNSMALAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEEL 142
Query: 135 MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS---VGLPQPAA 176
M A+ + E E ++++ QV D+ GL ++ LP P
Sbjct: 143 MNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGG 187
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 34/213 (15%)
Query: 14 LKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLAS 73
L+ T + L+R+ RK E ++K ++KK+ + G + A++ A++ +R R + + +
Sbjct: 25 LERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKA 84
Query: 74 RLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAE 133
+L A+ R+ + +SM+ L T NL ++ FEKQ M + E
Sbjct: 85 QLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQE 144
Query: 134 FMESAMAGSTS-LSTPEGEVNSLMQQVADDYGL--------------------EVSVGLP 172
FM+ A+ + E + ++ +V D+ G+ E ++G+P
Sbjct: 145 FMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAPIAETAMGIP 204
Query: 173 QPAA-----HAVPTKQQEKVDEDDLSRRLAELK 200
+P H P +DDL RL LK
Sbjct: 205 EPIGAGSEFHGNP--------DDDLQARLNTLK 229
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 13/201 (6%)
Query: 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLA 72
++ ++ ++R+ + EEK ++KK + GN +I A +R R + N
Sbjct: 20 EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79
Query: 73 SRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQA 132
+++ V T+I+ M K++ + K ++ + F+KQ +++
Sbjct: 80 AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139
Query: 133 EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQ-------- 184
E M A+ + E E L QV D+ G+ V+ L + TK
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199
Query: 185 -----EKVDEDDLSRRLAELK 200
E + D+L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 16/202 (7%)
Query: 14 LKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLAS 73
L+ ++++RQ R +KEE+ + +K+A ++ +M A+ A+ + R +
Sbjct: 25 LRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKA 84
Query: 74 RLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQK---MSETMDSFEKQFVNMEV 130
+++++ L + I +++ ++ KS E NL K M+ TM F K+ V
Sbjct: 85 QMNSISMHL---GESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGV 141
Query: 131 QAEF----MESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-----PAAHAVPT 181
EF +++A+ + EV+ ++ +A + E+ V + + PA A +
Sbjct: 142 IEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTS 201
Query: 182 KQQEKVDED-DLSRRLAELKAR 202
+++E V E D L E++AR
Sbjct: 202 REEEAVAEGVDDEEELEEIRAR 223
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++EE+ K VK A +KG D + A+ IR R + S+L A
Sbjct: 28 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSR-------KAVSKLYA- 79
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E+QA E
Sbjct: 80 -----SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIQATMRE 129
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++EE+ K VK A +KG D + A+ IR R + S+L A
Sbjct: 28 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSR-------KAVSKLYA- 79
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E+QA E
Sbjct: 80 -----SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIQATMRE 129
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++EE+ K VK A +KG D + A+ IR R + S+L A
Sbjct: 28 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR-------KAVSKLYA- 79
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E+QA E
Sbjct: 80 -----SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIQATMRE 129
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 39 VKKAIEKGNMDGARIYAEN--SIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMA 96
+KK+ +K ++ R+YA+ I K+ ++M R ++LD+V ++D +M T++ MA
Sbjct: 49 IKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSR--AQLDSVRMKIDEAIRMNTLSNQMA 106
Query: 97 NIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAM-----AGSTSLSTPEGE 151
+ + + L ++ TM EK+ + + +E ++ M G + E
Sbjct: 107 DSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDEE 166
Query: 152 VNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQ---EKVDEDDLSRRLAELKAR 202
VN +++Q ++ V +P A +Q+ EKVDE + R + E++ R
Sbjct: 167 VNKIVEQYTNEKFKNVD-QVPTVELAANEEEQEIPDEKVDE-EADRMVNEMRER 218
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++EE+ K VK A +KG D + A+ IR R + S+L A
Sbjct: 28 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSR-------KAVSKLYA- 79
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E++A E
Sbjct: 80 -----SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIRATMRE 129
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 21 LQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVA 80
+ RQ R ++EE+ K VK A +KG + + A+ IR R + S+L A
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSR-------KAVSKLYA--- 79
Query: 81 RLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E+QA E
Sbjct: 80 ---SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIQATMRE 129
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 21 LQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVA 80
+ RQ R ++EE+ K VK A +KG + + A+ IR R + S+L A
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSR-------KAVSKLYA--- 79
Query: 81 RLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ M N + L G+LQK +E M + + E+QA E
Sbjct: 80 ---SKAHMNSVLMGMKNQLAVLR---VAGSLQKSTEVMKAMQSLVKIPEIQATMRE 129
>sp|Q9M7R0|ALL8_OLEEU Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1
Length = 171
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 68 YLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVN 127
YL+ + + V R D +A ++K+L S+ + + ++ E +D+ + F+N
Sbjct: 14 YLQEPNEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFIN 73
Query: 128 MEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY-GLEVSVGLPQPAAHAVPTKQQEK 186
++ A F+++ S S E E+ + D+ GL SV L H + T+ E+
Sbjct: 74 VQEFAAFVKAETDPYPS-SGGENELKEAFELYDQDHNGLISSVEL-----HKILTRLGER 127
Query: 187 VDEDDLSRRLAELKARG 203
E D + + + G
Sbjct: 128 YAEHDCVEMIKSVDSDG 144
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++EE+ K +K A +KG D I A+ I+ + R ++L A
Sbjct: 28 RVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSK-------RAINKLYA- 79
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQA 132
++A+M ++ SM N + L G LQK +E M + + E+QA
Sbjct: 80 -----SKAQMNSVLLSMKNQLSVLR---VAGALQKSTEVMKAMQSLVKIPEIQA 125
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 38 KVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTI--NKSM 95
K+K+ + G D A+ A + ++ R QM +R + V+ K TTI N++M
Sbjct: 46 KIKQLAKAGRNDEAKRMANDLVKLRG-QMERMRATKTTLSAVS-----TKTTTIKANQTM 99
Query: 96 ANIVKSLESSLATGNLQ----KMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGE 151
AN + S +++T N Q ++ +TM +EKQ +E+ E M+
Sbjct: 100 ANAMASATKAMSTMNKQTDLVQLQKTMMEYEKQTQRVEMTEEMMQDMFEDDEVDEE---- 155
Query: 152 VNSLMQQVADDYGLEVSVGLPQPAAHAVP 180
+ ++ +V D+ L+ +P A +P
Sbjct: 156 ADDILSKVVDEVCLDNYQKMPSVAQKDLP 184
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 1 MGNTEKLLNQIMDLKFTSKSL---QRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAEN 57
M N ++QI D+K + + Q +AR+ + ++ +E+G G +
Sbjct: 860 MNNLPCAMHQIGDVKGILEQVEGYQAEAREALASLPSSPGLLQSLLERGQQLGVEVPEAQ 919
Query: 58 SIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSET 117
++++ EQ +L R A AR T A M + + A++ S A LQ++
Sbjct: 920 QLQRQVEQARWLDEVKRTLAPAARRGTLAVMRGLLVAGASVAPSPAVDKARAELQELLTI 979
Query: 118 MDSFEKQ 124
+ +E++
Sbjct: 980 AERWEEK 986
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78
+ + RQ R ++E++ K +K++ +KGN + I A+ ++ + AV
Sbjct: 28 RVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKK-------------AV 74
Query: 79 VARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFME 136
++A M ++ SM N + L S G+LQK +E M + + E+QA E
Sbjct: 75 NKLYASKAHMNSVLMSMKNQLAVLRVS---GSLQKSTEVMKAMQNLVKLPEIQATMRE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.313
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,969,259
Number of Sequences: 539616
Number of extensions: 2196185
Number of successful extensions: 9965
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 9767
Number of HSP's gapped (non-prelim): 370
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)