Query 028800
Match_columns 203
No_of_seqs 104 out of 702
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3232 Vacuolar assembly/sort 100.0 9.9E-48 2.1E-52 300.4 25.8 201 1-202 1-203 (203)
2 KOG3230 Vacuolar assembly/sort 100.0 2.2E-46 4.8E-51 297.8 24.4 198 4-201 11-223 (224)
3 KOG3229 Vacuolar sorting prote 100.0 3E-41 6.5E-46 270.5 23.2 198 4-201 13-227 (227)
4 KOG3231 Predicted assembly/vac 100.0 3.7E-39 8E-44 250.8 22.5 198 4-201 10-208 (208)
5 PF03357 Snf7: Snf7; InterPro 99.9 1.5E-26 3.2E-31 183.9 11.4 168 9-178 1-170 (171)
6 KOG1656 Protein involved in gl 99.6 1.6E-13 3.4E-18 110.7 20.4 171 4-177 16-194 (221)
7 PTZ00464 SNF-7-like protein; P 99.6 1.5E-13 3.3E-18 113.4 20.9 171 4-177 13-191 (211)
8 KOG2910 Uncharacterized conser 99.6 9.8E-13 2.1E-17 105.2 22.2 160 7-177 14-177 (209)
9 PTZ00446 vacuolar sorting prot 99.6 1.1E-12 2.4E-17 106.5 20.9 149 6-162 24-176 (191)
10 COG5491 VPS24 Conserved protei 99.5 9.3E-13 2E-17 107.7 17.3 174 21-201 5-201 (204)
11 KOG2911 Uncharacterized conser 99.1 1.2E-08 2.7E-13 90.9 20.9 169 6-176 230-399 (439)
12 KOG1655 Protein involved in va 98.6 4.8E-05 1E-09 61.7 20.7 152 5-163 15-174 (218)
13 COG5491 VPS24 Conserved protei 98.0 0.00018 3.9E-09 59.2 13.0 126 28-160 5-141 (204)
14 PTZ00464 SNF-7-like protein; P 97.8 0.014 3.1E-07 48.4 21.1 51 52-102 71-121 (211)
15 PRK10698 phage shock protein P 97.5 0.021 4.5E-07 47.7 18.0 108 16-123 52-170 (222)
16 KOG3231 Predicted assembly/vac 97.3 0.038 8.2E-07 44.0 15.4 164 3-178 16-188 (208)
17 PF04012 PspA_IM30: PspA/IM30 97.2 0.095 2.1E-06 43.3 19.2 126 12-137 47-186 (221)
18 PTZ00446 vacuolar sorting prot 97.2 0.093 2E-06 42.9 19.3 86 14-108 25-119 (191)
19 PF03398 Ist1: Regulator of Vp 97.2 0.0063 1.4E-07 48.6 10.7 151 12-166 2-164 (165)
20 KOG3230 Vacuolar assembly/sort 97.1 0.037 8E-07 45.2 14.2 152 6-164 20-175 (224)
21 PF03357 Snf7: Snf7; InterPro 97.0 0.005 1.1E-07 48.4 8.5 97 17-118 2-101 (171)
22 TIGR02977 phageshock_pspA phag 96.8 0.23 5.1E-06 41.2 19.0 111 17-127 53-174 (219)
23 KOG1656 Protein involved in gl 96.3 0.3 6.6E-06 40.1 14.4 131 29-163 34-173 (221)
24 COG1842 PspA Phage shock prote 95.3 1.5 3.2E-05 36.8 19.7 117 10-129 46-176 (225)
25 KOG3229 Vacuolar sorting prote 93.8 3.3 7.2E-05 34.2 17.2 36 131-166 144-179 (227)
26 KOG2910 Uncharacterized conser 87.9 14 0.0003 30.3 15.3 101 15-119 8-117 (209)
27 KOG3232 Vacuolar assembly/sort 87.5 14 0.0003 29.9 17.1 168 5-177 9-182 (203)
28 COG1937 Uncharacterized protei 84.9 11 0.00023 27.1 8.1 78 61-159 8-85 (89)
29 PF02583 Trns_repr_metal: Meta 82.6 14 0.00031 25.9 9.0 77 61-158 4-81 (85)
30 KOG2027 Spindle pole body prot 81.9 40 0.00087 30.6 17.4 138 27-168 12-162 (388)
31 PRK11352 regulator protein Frm 77.9 23 0.0005 25.4 8.6 48 61-108 8-55 (91)
32 PRK15039 transcriptional repre 77.7 23 0.0005 25.4 8.7 48 61-108 8-55 (90)
33 PF02403 Seryl_tRNA_N: Seryl-t 66.5 46 0.001 24.0 10.3 74 6-84 26-99 (108)
34 PRK05431 seryl-tRNA synthetase 62.4 1.1E+02 0.0024 28.0 10.7 71 8-84 27-98 (425)
35 TIGR00414 serS seryl-tRNA synt 57.2 1.5E+02 0.0034 26.9 11.1 73 8-84 29-101 (418)
36 COG0172 SerS Seryl-tRNA synthe 56.6 1.7E+02 0.0036 27.1 11.0 76 5-85 25-101 (429)
37 PF11500 Cut12: Spindle pole b 53.4 1.1E+02 0.0024 24.1 9.0 60 21-84 75-137 (152)
38 PF04065 Not3: Not1 N-terminal 50.9 1.5E+02 0.0033 25.0 8.9 39 20-66 46-84 (233)
39 PF07361 Cytochrom_B562: Cytoc 50.4 44 0.00096 24.3 5.0 34 36-69 69-102 (103)
40 PRK09720 cybC cytochrome b562; 44.2 56 0.0012 23.9 4.6 32 38-69 68-99 (100)
41 PRK09343 prefoldin subunit bet 40.6 95 0.0021 23.2 5.6 41 9-49 78-118 (121)
42 PF06305 DUF1049: Protein of u 39.0 49 0.0011 21.6 3.4 23 12-34 44-66 (68)
43 KOG2911 Uncharacterized conser 37.7 3.3E+02 0.0073 25.2 14.0 147 16-169 233-388 (439)
44 COG1422 Predicted membrane pro 37.4 2.2E+02 0.0048 23.5 7.5 49 26-81 75-123 (201)
45 PF15205 PLAC9: Placenta-speci 37.1 88 0.0019 21.3 4.3 45 125-180 24-68 (74)
46 KOG1937 Uncharacterized conser 36.2 3.7E+02 0.008 25.2 13.5 109 17-128 390-514 (521)
47 TIGR03752 conj_TIGR03752 integ 32.6 4.2E+02 0.0092 24.8 9.6 38 6-43 56-93 (472)
48 TIGR03544 DivI1A_domain DivIVA 32.5 48 0.001 19.0 2.2 25 138-163 10-34 (34)
49 COG3783 CybC Soluble cytochrom 30.8 97 0.0021 22.6 3.9 31 37-67 67-97 (100)
50 PLN03086 PRLI-interacting fact 27.9 5.4E+02 0.012 24.7 9.5 21 70-90 48-68 (567)
51 PLN02678 seryl-tRNA synthetase 27.9 4.9E+02 0.011 24.1 11.4 71 8-83 32-102 (448)
52 COG1382 GimC Prefoldin, chaper 26.9 2.4E+02 0.0051 21.3 5.6 35 6-40 67-101 (119)
53 PF14584 DUF4446: Protein of u 26.7 1.7E+02 0.0036 22.9 5.1 42 4-45 41-82 (151)
54 PF13655 RVT_N: N-terminal dom 26.4 2.3E+02 0.005 19.9 5.2 36 27-62 8-43 (84)
55 PF07361 Cytochrom_B562: Cytoc 26.0 2.6E+02 0.0056 20.2 6.2 38 90-127 2-39 (103)
56 PRK05892 nucleoside diphosphat 25.4 3.3E+02 0.0072 21.3 8.0 61 18-85 13-73 (158)
57 PF10191 COG7: Golgi complex c 25.3 6.8E+02 0.015 24.8 15.1 50 74-123 109-158 (766)
58 PRK07857 hypothetical protein; 25.0 2.6E+02 0.0056 20.6 5.5 38 10-47 29-66 (106)
59 cd00632 Prefoldin_beta Prefold 23.7 2.8E+02 0.0061 19.8 5.7 31 12-42 73-103 (105)
60 PF10078 DUF2316: Uncharacteri 23.2 2.2E+02 0.0047 20.4 4.6 34 108-141 2-35 (89)
61 KOG2196 Nuclear porin [Nuclear 22.8 4.9E+02 0.011 22.3 12.9 17 70-86 189-205 (254)
62 PF10158 LOH1CR12: Tumour supp 22.7 3.5E+02 0.0076 20.6 12.3 68 38-112 53-120 (131)
63 PF08165 FerA: FerA (NUC095) d 22.5 1.9E+02 0.0042 19.3 4.1 29 146-174 6-34 (66)
64 PRK09343 prefoldin subunit bet 22.3 2.9E+02 0.0062 20.6 5.5 39 4-42 66-104 (121)
65 PF04521 Viral_P18: ssRNA posi 21.6 2.8E+02 0.0061 21.0 5.1 39 17-55 73-111 (120)
66 PLN02320 seryl-tRNA synthetase 21.6 6.9E+02 0.015 23.6 10.9 71 8-84 92-162 (502)
67 PF04111 APG6: Autophagy prote 20.5 5.8E+02 0.013 22.3 12.3 31 11-41 52-82 (314)
No 1
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-48 Score=300.36 Aligned_cols=201 Identities=63% Similarity=0.890 Sum_probs=189.6
Q ss_pred CCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 1 MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVA 80 (203)
Q Consensus 1 mg~~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~ 80 (203)
||+.+.|...+|+|+|+.++|.|++++|+++|+.++.++|+|+++||.+.|||||.|+||++++..+|+++++++|+|..
T Consensus 1 ~~s~~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaa 80 (203)
T KOG3232|consen 1 MGSTDKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAA 80 (203)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHH
Q 028800 81 RLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVA 160 (203)
Q Consensus 81 ~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~ 160 (203)
|++|+.+|.+|+++|.+++++|....+.||+++|+.+|+.|+++|+.+++..++|+++|++++....|.++||.|+++|+
T Consensus 81 RvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vA 160 (203)
T KOG3232|consen 81 RVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVA 160 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHhcchhhcCCCCC--CCCCCCcccccCCcHHHHHHHHHHHhcC
Q 028800 161 DDYGLEVSVGLPQP--AAHAVPTKQQEKVDEDDLSRRLAELKAR 202 (203)
Q Consensus 161 ~E~gi~~~~~l~~~--p~~~~~~~~~~~~~~ddl~~RL~~Lr~~ 202 (203)
||+|++++..||.. |..|+++.++. .++|+|.+||++||+.
T Consensus 161 DeaGlElnq~lp~~~~~a~~~~t~~~~-~e~d~L~qRLaaLR~~ 203 (203)
T KOG3232|consen 161 DEAGLELNQELPQNVVPAISVKTSAVV-DEEDDLTQRLAALRAR 203 (203)
T ss_pred HHhchhhhhcCCCCCCCCcCCCCcccc-chhhHHHHHHHHHhcC
Confidence 99999999999877 34455554332 3459999999999973
No 2
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-46 Score=297.80 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=184.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
..-|++.++.|..+.|+|+|+..+++.++|++..+||+.+|.|+.+++||+|++|||.|+++.+|+.+++||.+|+.+++
T Consensus 11 ~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQ 90 (224)
T KOG3230|consen 11 AELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQ 90 (224)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
+..++..++.+|+++|+.|..||+.||||+++++|++|++|.+.|++.+|||+|++|++++++++|||+|.+++||+||+
T Consensus 91 tlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEi 170 (224)
T KOG3230|consen 91 TLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEI 170 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCCCCCCC----CCC------ccc-----ccCCcHHHHHHHHHHHhc
Q 028800 164 GLEVSVGLPQPAAH----AVP------TKQ-----QEKVDEDDLSRRLAELKA 201 (203)
Q Consensus 164 gi~~~~~l~~~p~~----~~~------~~~-----~~~~~~ddl~~RL~~Lr~ 201 (203)
|++++.+|.++|+. |++ .++ .....+|||++||++||.
T Consensus 171 Gvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 171 GVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK 223 (224)
T ss_pred cccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence 99999999999873 111 111 123459999999999996
No 3
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-41 Score=270.46 Aligned_cols=198 Identities=18% Similarity=0.298 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
+..+++|.+.||+..|.|+|+++.+++++++.+..||+++|+||...|++|||++|+.|+++.++|..+|||+||+++|.
T Consensus 13 KEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~ 92 (227)
T KOG3229|consen 13 KEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLK 92 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
.+.++..++++|.++|.+|+.+|+++.+|+|..||.+|++++++.|+++||++|+|+++.+.++.++++|+.|++|+.+|
T Consensus 93 eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~i 172 (227)
T KOG3229|consen 93 EQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEI 172 (227)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cchhhcCCCCCCCCC---CC--cccc--------c----CCcHHHHHHHHHHHhc
Q 028800 164 GLEVSVGLPQPAAHA---VP--TKQQ--------E----KVDEDDLSRRLAELKA 201 (203)
Q Consensus 164 gi~~~~~l~~~p~~~---~~--~~~~--------~----~~~~ddl~~RL~~Lr~ 201 (203)
...-...+|.+|... ++ ...| + +++..++..||++||+
T Consensus 173 t~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 173 TGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred hccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 866666666655321 11 1001 1 1135678889999995
No 4
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-39 Score=250.84 Aligned_cols=198 Identities=23% Similarity=0.375 Sum_probs=183.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
+.-.++.-+.||.+.|.|+|+.++++++|++++.+||+.++.||.++||+||++||..|+|..+-+.+++++.+++.|-.
T Consensus 10 ke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK 89 (208)
T KOG3231|consen 10 KEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNK 89 (208)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHH
Confidence 34466777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
.+.++.+++++|...+++|+.+|+.|+|+++..+|.+|++..++|++.+|||+|++|+.++.+.++||.+.+|+||+||+
T Consensus 90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEI 169 (208)
T KOG3231|consen 90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEI 169 (208)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCCCCCCC-CCCcccccCCcHHHHHHHHHHHhc
Q 028800 164 GLEVSVGLPQPAAH-AVPTKQQEKVDEDDLSRRLAELKA 201 (203)
Q Consensus 164 gi~~~~~l~~~p~~-~~~~~~~~~~~~ddl~~RL~~Lr~ 201 (203)
||++++++.++|+. |.+.........+|+++.|++||+
T Consensus 170 GIEisgKma~~P~a~s~~~~st~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 170 GIEISGKMAKAPSARSLPSASTSKATISDIERQLAALRS 208 (208)
T ss_pred hhhhcchhccCCccCCCCccccCCCcHHHHHHHHHHhcC
Confidence 99999999999954 333222223568999999999985
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.94 E-value=1.5e-26 Score=183.88 Aligned_cols=168 Identities=26% Similarity=0.354 Sum_probs=138.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 9 NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKM 88 (203)
Q Consensus 9 ~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~ 88 (203)
+++++|+.+.+.|++++.+|+.+.+++..++|+++++|+...|++|++..++.+++..+++.+..+|+++..+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcchh-
Q 028800 89 TTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEV- 167 (203)
Q Consensus 89 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~~- 167 (203)
..++.+|+.++++|+.+|+.+++++|..+|++|..+++.++.++++|++.++.. +..+++|++++++++.+|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988664 35678899999999999999998
Q ss_pred -hcCCCCCCCCC
Q 028800 168 -SVGLPQPAAHA 178 (203)
Q Consensus 168 -~~~l~~~p~~~ 178 (203)
...||++|+++
T Consensus 159 ~~~~lp~~P~~~ 170 (171)
T PF03357_consen 159 EKQQLPSVPSTE 170 (171)
T ss_dssp -SS-SS---HH-
T ss_pred ccccCCcCCCCC
Confidence 88899888653
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.6e-13 Score=110.73 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=129.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVAR-- 81 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~-- 81 (203)
..+..+.+-+||.+..-|++.. +.-++++..++...+++.-...-|...+.|-|+|.+..+|.+....|..+..|
T Consensus 16 ~~t~~eaI~kLrEteemL~KKq---e~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~ 92 (221)
T KOG1656|consen 16 KPTPQEAIQKLRETEEMLEKKQ---EFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92 (221)
T ss_pred CCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456788999999988888766 55566777777776665556666666666667888888888888888888777
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCCchHHHHHHHHH
Q 028800 82 -LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA--GSTSLSTPEGEVNSLMQQ 158 (203)
Q Consensus 82 -l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~--~~~~~~~~eeevd~ll~q 158 (203)
|+.+.++..+..+|..++++|+.+++.||+++|..+|++...|.+.+..|++.|+..+. ..+|+++...|.|+|-++
T Consensus 93 alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqe 172 (221)
T KOG1656|consen 93 ALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQE 172 (221)
T ss_pred HHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999888888764 224434444455555555
Q ss_pred HHHHhcchhhc---CCCCCCCC
Q 028800 159 VADDYGLEVSV---GLPQPAAH 177 (203)
Q Consensus 159 v~~E~gi~~~~---~l~~~p~~ 177 (203)
.++.--+++.. .||++|+.
T Consensus 173 eld~~ll~~~~p~v~LP~vPs~ 194 (221)
T KOG1656|consen 173 ELDKELLDIRAPPVPLPDVPSI 194 (221)
T ss_pred HHHHHHhccCCCCCCCCCCCcc
Confidence 55554444333 34555543
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.62 E-value=1.5e-13 Score=113.44 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM----NYLRLASRLDAVV 79 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~----~l~~~~aqL~~v~ 79 (203)
..++.+.+..+|.....|++.+.+++.+..+.+..+++.-..++ ...|.-|..++|.||... ++......|+.+.
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~ 91 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQ 91 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999988888877765433221 235667888888776444 4667777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800 80 ARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQV 159 (203)
Q Consensus 80 ~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv 159 (203)
+.|+++..+..+..+|+.++.+|+.+|+.+++++|..+|+++..+++..+.++++++..+... +..+++|++..++.+
T Consensus 92 ~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdELe~ELe~L 169 (211)
T PTZ00464 92 FTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDEMLGELDAL 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888754321 235677777777777
Q ss_pred HHHhcchhh----cCCCCCCCC
Q 028800 160 ADDYGLEVS----VGLPQPAAH 177 (203)
Q Consensus 160 ~~E~gi~~~----~~l~~~p~~ 177 (203)
..|...+.. ...|++|+.
T Consensus 170 e~e~~~e~~~~~l~~~~~~p~~ 191 (211)
T PTZ00464 170 DFDMEKEADASYLADALAVPGT 191 (211)
T ss_pred HHHHhccccchhhhccccCCCC
Confidence 776533222 244555554
No 8
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.59 E-value=9.8e-13 Score=105.20 Aligned_cols=160 Identities=15% Similarity=0.245 Sum_probs=134.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL-RLASRLDAV---VARL 82 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aqL~~v---~~~l 82 (203)
.+.++..||.+.+.|-++.+++++.....+..+|++++.|..+.|+.+. +++++...|+ +...||..+ .+.|
T Consensus 14 ~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllL----KkKryQE~Ll~qt~~qL~nlEqmvsdi 89 (209)
T KOG2910|consen 14 QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLL----KKKRYQEELLTQTDNQLINLEQMVSDI 89 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999988876655 7666666665 677777666 4557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 028800 83 DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADD 162 (203)
Q Consensus 83 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E 162 (203)
+......+|..+++..+.+++++|+.++++.|.++|++-...++..+.+++|+++.|+. ++++++.+.++-+..|
T Consensus 90 Eft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese 164 (209)
T KOG2910|consen 90 EFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESE 164 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999998885 3455565555555555
Q ss_pred hcchhhcCCCCCCCC
Q 028800 163 YGLEVSVGLPQPAAH 177 (203)
Q Consensus 163 ~gi~~~~~l~~~p~~ 177 (203)
...+ .++|..|+.
T Consensus 165 ~~~e--~e~PevPs~ 177 (209)
T KOG2910|consen 165 LEVE--AELPEVPST 177 (209)
T ss_pred hhhh--hhcCCCCCC
Confidence 4333 678888765
No 9
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.57 E-value=1.1e-12 Score=106.51 Aligned_cols=149 Identities=11% Similarity=0.166 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRT-EQMNYLRLASRLDAV---VAR 81 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk-~~~~l~~~~aqL~~v---~~~ 81 (203)
+..+.+.+||.+...|.+...+|+..-.++...+|+++++|+... |..++|.|| +...+.++.+++..+ ...
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999665 555556444 444444555555555 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 028800 82 LDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVAD 161 (203)
Q Consensus 82 l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~ 161 (203)
|+++..+..+..+|+.++.+|+.+|+.|++++|..+|+++..+++..+.++++++..+ .+..+++|++..++.+..
T Consensus 100 iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~----~~~~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 100 LENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNL----LNNVDDDEIDKELDLLKE 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988777532 123567777777776654
Q ss_pred H
Q 028800 162 D 162 (203)
Q Consensus 162 E 162 (203)
|
T Consensus 176 e 176 (191)
T PTZ00446 176 Q 176 (191)
T ss_pred H
Confidence 3
No 10
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.53 E-value=9.3e-13 Score=107.65 Aligned_cols=174 Identities=26% Similarity=0.308 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 21 LQRQARKCEKEEKAEKLKVKKAIEKG--NMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANI 98 (203)
Q Consensus 21 L~re~~kle~ee~k~~~~iK~a~kkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~ 98 (203)
+++++.++-.+.+...+....+.++. +.-..+++++.+++.+++..|+...+++|.++...+.... +|.++
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~-------~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKV-------VMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 56666666666666555555554433 4445777777777777666666666666665555555444 55555
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCC--CCCchHHHHHHHHHHHHHhcchhhcCCC
Q 028800 99 VKSLESSLATGN-LQKMSETMDSFEKQFVNMEVQA---EFMESAMAGSTS--LSTPEGEVNSLMQQVADDYGLEVSVGLP 172 (203)
Q Consensus 99 ~~~m~~~n~~m~-l~~i~~~m~~f~~e~~~~~i~~---e~m~d~~~~~~~--~~~~eeevd~ll~qv~~E~gi~~~~~l~ 172 (203)
+..|...+..|+ ++.|.++|+.|+..+..++... ++|.+.++...+ ..++.+++|+.++.|++|+|+++.....
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 555555666666 8889999999999999999777 677777766664 3577889999999999999999995444
Q ss_pred CCCC-------CCCC-ccc-------ccCCcHHHHHHHHHHHhc
Q 028800 173 QPAA-------HAVP-TKQ-------QEKVDEDDLSRRLAELKA 201 (203)
Q Consensus 173 ~~p~-------~~~~-~~~-------~~~~~~ddl~~RL~~Lr~ 201 (203)
+.|. .|.. .++ ++...++.|.+||..|++
T Consensus 158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence 4332 1111 111 122348999999999985
No 11
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.2e-08 Score=90.87 Aligned_cols=169 Identities=15% Similarity=0.214 Sum_probs=143.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQ 85 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a 85 (203)
.++-.+.+|+.+.-.|.|++..|+.+-++...+++.+.+.|....|..|++.--+.-|...+......+|.+|-.+|.++
T Consensus 230 ~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s 309 (439)
T KOG2911|consen 230 EIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNS 309 (439)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45667889999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhc
Q 028800 86 AKMTTINKSMANIVKSLESSLA-TGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYG 164 (203)
Q Consensus 86 ~~~~~~~~~m~~~~~~m~~~n~-~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~g 164 (203)
.++.-|..+++.++.+|+.++. ...++++..+|++...-++....+++.|....-+.. +-++|+++..+.++..+..
T Consensus 310 ~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~--d~~de~lEkEL~~L~~D~~ 387 (439)
T KOG2911|consen 310 QTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNI--DFEDEDLEKELEDLEADEK 387 (439)
T ss_pred cccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC--ccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999 567888999999999999998888777666544432 4567888888888887665
Q ss_pred chhhcCCCCCCC
Q 028800 165 LEVSVGLPQPAA 176 (203)
Q Consensus 165 i~~~~~l~~~p~ 176 (203)
-.-+-.+|..|.
T Consensus 388 k~e~~~lp~~~~ 399 (439)
T KOG2911|consen 388 KNEDLVLPLNSV 399 (439)
T ss_pred cCCccCCCCCCc
Confidence 433334444443
No 12
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=4.8e-05 Score=61.66 Aligned_cols=152 Identities=13% Similarity=0.199 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 028800 5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGN-MDGARIYAENSIRKRTEQMNYLRLASR-------LD 76 (203)
Q Consensus 5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~-~~~ari~Ak~lvr~rk~~~~l~~~~aq-------L~ 76 (203)
-+|.+++-.+......++..|.+|+.+=-+++.+|++. +-|. ..+.|.-|=.+++.|| .|...+.+ |+
T Consensus 15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK---~yE~q~d~L~~QsfNMe 90 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKK---MYENQKDSLDQQSFNME 90 (218)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHH---HHHHHHHHHHHhcccHH
Confidence 46899999999999999999999999999999999987 4443 3445555555555444 34444444 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 028800 77 AVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLM 156 (203)
Q Consensus 77 ~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll 156 (203)
.+.+..+...-+...+.+|+...+.|+...+.+++++|...=+++.-=|+..+.++|.++-..+... .++++.+..+
T Consensus 91 Qa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aEL 167 (218)
T KOG1655|consen 91 QANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAEL 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHH
Confidence 5556666667777788999999999999999999999998888888888899999988888765543 5567777777
Q ss_pred HHHHHHh
Q 028800 157 QQVADDY 163 (203)
Q Consensus 157 ~qv~~E~ 163 (203)
+-+.+|.
T Consensus 168 daL~~E~ 174 (218)
T KOG1655|consen 168 DALGQEL 174 (218)
T ss_pred HHHHhHh
Confidence 7775554
No 13
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.02 E-value=0.00018 Score=59.17 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 28 CEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM--NYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESS 105 (203)
Q Consensus 28 le~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~ 105 (203)
+++..++.....|.-.++|.....++-.+.-.++|.... ++..+.++|+.+.+||++..+ +-.-.-+|..+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~-------~~~e~~~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDT-------MLFEKVVMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 778888888889988888876664444444444444444 778888888888888877644 45566778888
Q ss_pred HhcCCHHHHHHH----HHHHHHHHHHHHHHHHHHH---hhhcCCCCCCCc--hHHHHHHHHHHH
Q 028800 106 LATGNLQKMSET----MDSFEKQFVNMEVQAEFME---SAMAGSTSLSTP--EGEVNSLMQQVA 160 (203)
Q Consensus 106 n~~m~l~~i~~~----m~~f~~e~~~~~i~~e~m~---d~~~~~~~~~~~--eeevd~ll~qv~ 160 (203)
...+........ +..+...++.+...=|.+- +.+....+...+ ..+.++.+++..
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v 141 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELV 141 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHH
Confidence 766555544322 2345556666665555555 455444444443 334444444444
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.80 E-value=0.014 Score=48.41 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 52 RIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSL 102 (203)
Q Consensus 52 ri~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m 102 (203)
|.|=+++-+...+..++..+...++.......+..++..-+.+|+++-+.|
T Consensus 71 K~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 71 RMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444555555555555555555555555555555555555555544443
No 15
>PRK10698 phage shock protein PspA; Provisional
Probab=97.52 E-value=0.021 Score=47.72 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 028800 16 FTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARI-------YAENSIRKRTEQMNYL----RLASRLDAVVARLDT 84 (203)
Q Consensus 16 ~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari-------~Ak~lvr~rk~~~~l~----~~~aqL~~v~~~l~~ 84 (203)
-..+.+.|+...++....+...++..|+.+|+.+-||. |+..+-..+.+..... .+..++..+..+|+.
T Consensus 52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999999998 8877777666655443 456666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028800 85 QAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEK 123 (203)
Q Consensus 85 a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~ 123 (203)
+.+-..+--+=..++.+..++|..+.--.....|..|++
T Consensus 132 ak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~r 170 (222)
T PRK10698 132 TRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFES 170 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 666555555555666666666665554444556666555
No 16
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.038 Score=44.00 Aligned_cols=164 Identities=12% Similarity=0.222 Sum_probs=96.9
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 3 NTEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLK---------VKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLAS 73 (203)
Q Consensus 3 ~~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~---------iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~a 73 (203)
|.-.|+.+.+.|-...|.++++-++||.+-++.-.. .|+.+.-.+ .-.|.|| ...+...+..
T Consensus 16 n~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a--------~s~ki~s~~~ 86 (208)
T KOG3231|consen 16 NNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFA--------VSSKITSMST 86 (208)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhh--------hhhhhhhhHH
Confidence 345688889999999999999999999988876432 222222111 1123444 1222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHH
Q 028800 74 RLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVN 153 (203)
Q Consensus 74 qL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd 153 (203)
|=-.+.+++.-+..|....+.|+-..+.|.----.-+...+++. +...++. -.++.+.++|.|+..-+.++...-|+
T Consensus 87 QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~a--nmKMemT-eEMiNDTLDdild~sgDeeEs~aiVN 163 (208)
T KOG3231|consen 87 QNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKA--NMKMEMT-EEMINDTLDDILDGSGDEEESQAIVN 163 (208)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHH--HHHhhhH-HHHHHhhHHHHhcCCCcHHHHHHHHH
Confidence 33334455544445555555555544444322111112233222 2222222 24678999999999988888889999
Q ss_pred HHHHHHHHHhcchhhcCCCCCCCCC
Q 028800 154 SLMQQVADDYGLEVSVGLPQPAAHA 178 (203)
Q Consensus 154 ~ll~qv~~E~gi~~~~~l~~~p~~~ 178 (203)
.+++++=-|+...+..--...|.+.
T Consensus 164 qVLDEIGIEisgKma~~P~a~s~~~ 188 (208)
T KOG3231|consen 164 QVLDEIGIEISGKMAKAPSARSLPS 188 (208)
T ss_pred HHHHHhhhhhcchhccCCccCCCCc
Confidence 9999999999988876443445543
No 17
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.20 E-value=0.095 Score=43.29 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=76.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 028800 12 MDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL-----------RLASRLDAVVA 80 (203)
Q Consensus 12 ~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~-----------~~~aqL~~v~~ 80 (203)
-......+.+.+++..++....+...++..|+++|+.+.||.++........+...|. .++.++..+..
T Consensus 47 a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 47 ARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566678999999999999999999999999999999988877777666555444 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028800 81 RLDTQAKMTTINKSMANIVKSLESSL---ATGNLQKMSETMDSFEKQFVNMEVQAEFMES 137 (203)
Q Consensus 81 ~l~~a~~~~~~~~~m~~~~~~m~~~n---~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d 137 (203)
+|....+-..+..+-..++..-..++ ..+++......+..++.....+.-..+.+.+
T Consensus 127 kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 127 KLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444433333333333333 3444444444555555555554444444443
No 18
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.19 E-value=0.093 Score=42.92 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 028800 14 LKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRK---------RTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 14 lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~---------rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
.+.++=.|...+..|++.+..+..+|...-. .|+..++. =+....|...-.++++-...|++
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~---------~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq 95 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI---------EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLED 95 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888888765432 23444342 22333344555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 028800 85 QAKMTTINKSMANIVKSLESSLAT 108 (203)
Q Consensus 85 a~~~~~~~~~m~~~~~~m~~~n~~ 108 (203)
+..+......=..+..+|+..++.
T Consensus 96 ~~~~iE~a~~~~ev~~aLk~g~~a 119 (191)
T PTZ00446 96 NMINLENMHLHKIAVNALSYAANT 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555555666666554
No 19
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=97.19 E-value=0.0063 Score=48.56 Aligned_cols=151 Identities=21% Similarity=0.339 Sum_probs=103.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 12 MDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTI 91 (203)
Q Consensus 12 ~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~ 91 (203)
..||.....|.--.++.....+..+.+|-..++.|+.+.||+-+.++|+-.....-|.-+---.+-+..++.........
T Consensus 2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~ 81 (165)
T PF03398_consen 2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC 81 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 46888889999999999999999999999999999999999999999999999998888888888887777666555444
Q ss_pred HHHHHHHHHH-HHHHHhcCCHHHHHHHHHH----HHHHHHHHH-------HHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800 92 NKSMANIVKS-LESSLATGNLQKMSETMDS----FEKQFVNME-------VQAEFMESAMAGSTSLSTPEGEVNSLMQQV 159 (203)
Q Consensus 92 ~~~m~~~~~~-m~~~n~~m~l~~i~~~m~~----f~~e~~~~~-------i~~e~m~d~~~~~~~~~~~eeevd~ll~qv 159 (203)
-..+..+..+ +-...+.-++|++..+=.- |.++|...- +...++.- ++. ..-+++.++.++.+|
T Consensus 82 p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~k-Ls~---~~p~~~~v~~~L~eI 157 (165)
T PF03398_consen 82 PPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEK-LSV---KPPSEELVEKYLKEI 157 (165)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHH-CS----S---CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHH-cCC---CCcCHHHHHHHHHHH
Confidence 4444444443 4444444588887665544 444443221 11111111 221 124467899999999
Q ss_pred HHHhcch
Q 028800 160 ADDYGLE 166 (203)
Q Consensus 160 ~~E~gi~ 166 (203)
+.|+|++
T Consensus 158 A~e~~i~ 164 (165)
T PF03398_consen 158 AKEYGIP 164 (165)
T ss_dssp HHHCT-S
T ss_pred HHHcCCC
Confidence 9999975
No 20
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.037 Score=45.15 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKA---IEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARL 82 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l 82 (203)
.|....+.|-.+...|+-+-++|=.+-|+.-+.=... +...|.-..|-|.+.++-.|. ++...+-++.++-+.-
T Consensus 20 al~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlkss~ 96 (224)
T KOG3230|consen 20 ALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKSST 96 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHH
Confidence 3455555555555555555555554444432211110 111223334556666655543 3345555666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 028800 83 DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFV-NMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVAD 161 (203)
Q Consensus 83 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~-~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~ 161 (203)
.-+.+|..++++|....+.|.- -.+.+|..-...-+..|+ +-.++.+.|+|+|++..++++.++=|..+++++=-
T Consensus 97 sma~aMkGaTkam~~MNrqmnl----pq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGv 172 (224)
T KOG3230|consen 97 SMAQAMKGATKAMAGMNRQMNL----PQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGV 172 (224)
T ss_pred HHHHHHHHHHHHHHHHhhccCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcc
Confidence 6666666777766665443321 122222222222222222 12255677777777666666667777777777654
Q ss_pred Hhc
Q 028800 162 DYG 164 (203)
Q Consensus 162 E~g 164 (203)
.++
T Consensus 173 dl~ 175 (224)
T KOG3230|consen 173 DLA 175 (224)
T ss_pred cHH
Confidence 444
No 21
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.00 E-value=0.005 Score=48.40 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 17 TSKSLQRQARKCEKEEKAEKLKVKKA---IEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINK 93 (203)
Q Consensus 17 ~~r~L~re~~kle~ee~k~~~~iK~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~ 93 (203)
++..|...+++|++..+++..+|+.. +++--..+-+..|+.+.|.++... +...++.....+|+..........
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888777777654 223333444566666666555433 344455666667777777667777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH
Q 028800 94 SMANIVKSLESSLATGNLQKMSETM 118 (203)
Q Consensus 94 ~m~~~~~~m~~~n~~m~l~~i~~~m 118 (203)
....+..+|+..++. +.++...|
T Consensus 79 ~~~~v~~al~~~~~~--Lk~~~~~i 101 (171)
T PF03357_consen 79 SNQQVVKALKQSSKA--LKKINKQI 101 (171)
T ss_dssp HHHHHSSS----SHH--HHHHHHST
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhh
Confidence 777777777777666 44444444
No 22
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.80 E-value=0.23 Score=41.20 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 028800 17 TSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM-----------NYLRLASRLDAVVARLDTQ 85 (203)
Q Consensus 17 ~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~-----------~l~~~~aqL~~v~~~l~~a 85 (203)
..+.++|++..++....+...+++.|+++|+.+-||-.+..-........ ....++.+|..+..+++.+
T Consensus 53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 53 DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668899999999999999999999999999988865433222222222 2224555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028800 86 AKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVN 127 (203)
Q Consensus 86 ~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~ 127 (203)
.+....-.+=...+..-..++..+.--.+...+..|++--++
T Consensus 133 k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 133 RARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 555443333333444444444433322233444555443333
No 23
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.3 Score=40.14 Aligned_cols=131 Identities=13% Similarity=0.245 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 29 EKEEKAEKLKVKKAIEKGNMDGARIYAE----NSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLES 104 (203)
Q Consensus 29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~ 104 (203)
++.+.=+..+|-.-+..+ ||.|+. -++..=+.+.+|.+--+|++++.+.|+.+..+..-.+.=.-+..+|+.
T Consensus 34 ~KKqe~Le~ki~~e~e~~----A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~ 109 (221)
T KOG1656|consen 34 EKKQEFLEKKIEQEVENN----ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGS 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 444444555555444332 555543 344444566778888899999999999998877777777778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcCCCCC--CCchHHHHHHHHHHHHHh
Q 028800 105 SLATGNLQKMSETMDSFEKQFVNME---VQAEFMESAMAGSTSL--STPEGEVNSLMQQVADDY 163 (203)
Q Consensus 105 ~n~~m~l~~i~~~m~~f~~e~~~~~---i~~e~m~d~~~~~~~~--~~~eeevd~ll~qv~~E~ 163 (203)
.-+.|+--.=.--++++..-|++.. -+.+-|+++++...+. ..+++|....++++.+|.
T Consensus 110 ~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee 173 (221)
T KOG1656|consen 110 AAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE 173 (221)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence 8888554443334445555555544 3445578899999873 588999999999998876
No 24
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.29 E-value=1.5 Score=36.78 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 028800 10 QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM-----------NYLRLASRLDAV 78 (203)
Q Consensus 10 ~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~-----------~l~~~~aqL~~v 78 (203)
.+-++.-..+.++|+..++.....++..+.+.|+.+||.+-||-.+...-..-+... ...+++.++..+
T Consensus 46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L 125 (225)
T COG1842 46 ALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL 125 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667789999999999999999999999999998887765544333322222 222344444444
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 028800 79 VARL---DTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNME 129 (203)
Q Consensus 79 ~~~l---~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~ 129 (203)
..+| .+-..+.....+..++..-|..+...++. ...|..|++--++..
T Consensus 126 e~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie 176 (225)
T COG1842 126 EQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence 4443 33444444555566666667777677666 445555555444433
No 25
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.3 Score=34.25 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcch
Q 028800 131 QAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE 166 (203)
Q Consensus 131 ~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~ 166 (203)
.+++|+.+.|+-...++.++|||.++.++..+-..+
T Consensus 144 vdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~ 179 (227)
T KOG3229|consen 144 VDETMESVEDSEEMEEEADEEVDKILTEITGEKAGE 179 (227)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence 344444444444333445555666665555554443
No 26
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=87.88 E-value=14 Score=30.34 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028800 15 KFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR-KRTEQMNYL--------RLASRLDAVVARLDTQ 85 (203)
Q Consensus 15 r~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr-~rk~~~~l~--------~~~aqL~~v~~~l~~a 85 (203)
+..+-+-||-|-.+-.+..++.+-.|+.-+. .+.=|.+|+.+|| .||....|+ .+-.|-+.--..|+.+
T Consensus 8 ~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~--le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm 85 (209)
T KOG2910|consen 8 KSRITDQDRAILSLKTQRDKLKQYQKRLEKQ--LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM 85 (209)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777766655432 5566889999999 566554444 2223333334557888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028800 86 AKMTTINKSMANIVKSLESSLATGNLQKMSETMD 119 (203)
Q Consensus 86 ~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~ 119 (203)
.+...++..-+.+..+++..|.. +.+++..|+
T Consensus 86 vsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~ 117 (209)
T KOG2910|consen 86 VSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFD 117 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 88888888888999999999988 666665443
No 27
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.52 E-value=14 Score=29.93 Aligned_cols=168 Identities=15% Similarity=0.183 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKK---AIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVAR 81 (203)
Q Consensus 5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~---a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~ 81 (203)
..|++..|--+.-.|+-.+=.+.-.-|..|++.-|++ -+.+=.-+.|--.-.+.|..=+-..|+-...+++++....
T Consensus 9 ~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtm 88 (203)
T KOG3232|consen 9 NHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTM 88 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444333333333344455555544 0111111111111222333333444555555666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHH
Q 028800 82 LDTQAKMTTINKSMANIVKSL--ESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQV 159 (203)
Q Consensus 82 l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv 159 (203)
-.-..+|..|+.+|..+-+.| .++... .+++.+...++.-+. +..+.+|+++-.-....++.+.=...+-++.
T Consensus 89 r~Vt~sM~gVvK~md~alktmNLekis~~--MDkFE~qFedldvqt---~~me~~m~~st~l~tpq~~Vd~Lmq~vADea 163 (203)
T KOG3232|consen 89 RKVTKSMAGVVKSMDSALKTMNLEKISQL--MDKFEKQFEDLDVQT---EVMEKAMSGSTALSTPQGDVDSLMQQVADEA 163 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHhhhhhhHH---HHHHHhccCcccccCChhHHHHHHHHHHHHh
Confidence 444455666666666554443 233333 333444433333332 3334455554333333333333333333333
Q ss_pred HHHhcchhhcCC-CCCCCC
Q 028800 160 ADDYGLEVSVGL-PQPAAH 177 (203)
Q Consensus 160 ~~E~gi~~~~~l-~~~p~~ 177 (203)
=-|...++...+ |..|.+
T Consensus 164 GlElnq~lp~~~~~a~~~~ 182 (203)
T KOG3232|consen 164 GLELNQELPQNVVPAISVK 182 (203)
T ss_pred chhhhhcCCCCCCCCcCCC
Confidence 334444444433 555544
No 28
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.85 E-value=11 Score=27.12 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA 140 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~ 140 (203)
+++..+|+-+...|+.+|..-|+.-.-...+...+..+-..++.+... ++++-+...+.
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~---------------------vl~~hl~~cv~ 66 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE---------------------VLEEHLKECVK 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 567778888999999999888887777777776666666666665443 45555555554
Q ss_pred CCCCCCCchHHHHHHHHHH
Q 028800 141 GSTSLSTPEGEVNSLMQQV 159 (203)
Q Consensus 141 ~~~~~~~~eeevd~ll~qv 159 (203)
....+...++.+++++.-+
T Consensus 67 ~a~~~~~~~~~i~el~~~~ 85 (89)
T COG1937 67 RAVEDGDEEESIDELIKAL 85 (89)
T ss_pred HHhhccchHhHHHHHHHHH
Confidence 4433333356666665543
No 29
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=82.60 E-value=14 Score=25.93 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA 140 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~ 140 (203)
+++-..||.+...|+.+|..-++.-.....+...+..+-.+|..+... ++++.+...+.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 455677888999999999888777777777777777776666666554 56666777776
Q ss_pred CCCCC-CCchHHHHHHHHH
Q 028800 141 GSTSL-STPEGEVNSLMQQ 158 (203)
Q Consensus 141 ~~~~~-~~~eeevd~ll~q 158 (203)
....+ .+.++.+++++.-
T Consensus 63 ~~~~~~~~~~~~i~el~~~ 81 (85)
T PF02583_consen 63 EAIQDEEDREEAIEELIKL 81 (85)
T ss_dssp CHCCTCCCHHHHHHHHHHH
T ss_pred hHhcCcccHHHHHHHHHHH
Confidence 65543 4556666666543
No 30
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=81.91 E-value=40 Score=30.62 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 028800 27 KCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMAN-IVKSLESS 105 (203)
Q Consensus 27 kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~-~~~~m~~~ 105 (203)
|=+-.-++++.+|-..++.|+.+.|++=+..+||-.+...-|.-+--=.+-+..|+.....+...-..++. ++.+|=+.
T Consensus 12 Kk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifAA 91 (388)
T KOG2027|consen 12 KKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFAA 91 (388)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHHh
Confidence 33556788899999999999999999999999998888887777666677777777777766666655555 45556666
Q ss_pred HhcCCHHHHHHHHHHH----HHHHHHHHHHH--------HHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcchhh
Q 028800 106 LATGNLQKMSETMDSF----EKQFVNMEVQA--------EFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVS 168 (203)
Q Consensus 106 n~~m~l~~i~~~m~~f----~~e~~~~~i~~--------e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~~~ 168 (203)
-+.-++++|..+=+-| .++|...-+-. .+|.. .....-+.+-+..++.+|+.|+++...
T Consensus 92 ~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiek----Ls~~~P~~e~k~k~lkEIA~ey~v~~~ 162 (388)
T KOG2027|consen 92 PRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEK----LSVEAPPKELKEKYLKEIAKEYNVNWE 162 (388)
T ss_pred ccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHH----hcCCCCcHHHHHHHHHHHHHHhCCCcc
Confidence 6666799987665554 44444433221 12222 111123455569999999999998553
No 31
>PRK11352 regulator protein FrmR; Provisional
Probab=77.88 E-value=23 Score=25.39 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 108 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~ 108 (203)
+++-..||-+...|+.+|..-|+.-.....+...+..+-.++..+...
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~ 55 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAE 55 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999998888777777777776666666655443
No 32
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=77.67 E-value=23 Score=25.36 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 108 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~ 108 (203)
+++...||-+...|+.+|..-++.-.....+...+..+-.+++.+...
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~ 55 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888999999999888877666666666666655555555443
No 33
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.50 E-value=46 Score=23.96 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
..-+-+..+-...|.+..+...+..+.+.+-.+|..+.+.| .+.....+ +.+.-...+..+..++..+..++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~----e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKA----EVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999998 22222222 3444455566666666666666544
No 34
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.45 E-value=1.1e+02 Score=27.95 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=47.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKG-NMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg-~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
-+.+..+....|++..++..|..+.+++-++|++..+.+ +.+..+. +.+.-..++..+..++..+..++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999866665 3222221 2333444455555555555555433
No 35
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.17 E-value=1.5e+02 Score=26.95 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
-+.+..+....|++..++..|..+.+.+-++|+...+.++.....+.+ +.+.-..++..+..++..+..++..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK----ELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999999998866665421111111 3444455555666666666655444
No 36
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.62 E-value=1.7e+02 Score=27.11 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028800 5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIR-KRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
..+.+-+..|-...|.+.++...|.++.+.+-++|.++.++|.. ++..++. .+.-..++......++.+...++
T Consensus 25 ~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 25 ALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566778888999999999999999999999999988888764 3333333 45555566666666666666554
Q ss_pred HH
Q 028800 84 TQ 85 (203)
Q Consensus 84 ~a 85 (203)
+.
T Consensus 100 ~~ 101 (429)
T COG0172 100 TL 101 (429)
T ss_pred HH
Confidence 44
No 37
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=53.42 E-value=1.1e+02 Score=24.13 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 21 LQRQARKCEKEEKAE---KLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 21 L~re~~kle~ee~k~---~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
++.++.+.+.+..+| +.-+|.-+++.|.++++.-- +.|....+...|-.++..+.++|.+
T Consensus 75 Fe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~----KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 75 FESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAE----KLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665 45566677777777766443 5677778888888888777766543
No 38
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.95 E-value=1.5e+02 Score=24.99 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 028800 20 SLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQM 66 (203)
Q Consensus 20 ~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~ 66 (203)
+|.++|++|+| +..+||.-+..+++.... .|+..|+.+.
T Consensus 46 DLKkEIKKLQR----~RdQIK~W~~~~diKdk~----~L~e~Rk~IE 84 (233)
T PF04065_consen 46 DLKKEIKKLQR----LRDQIKTWLSSNDIKDKK----KLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHH----HHHHHHHHccCcccccHH----HHHHHHHHHH
Confidence 57777777774 556777788777776533 2556666555
No 39
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=50.38 E-value=44 Score=24.32 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 36 KLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 36 ~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
...+..++..|+.+.|+..++.+--+|+...+.+
T Consensus 69 id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 69 IDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 4567789999999999999999999999887655
No 40
>PRK09720 cybC cytochrome b562; Provisional
Probab=44.17 E-value=56 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 38 KVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 38 ~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
.....+..|+.+.|+..|+++.-+|+..-+-|
T Consensus 68 ~A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 68 DALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567789999999999999999999876644
No 41
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.58 E-value=95 Score=23.22 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 028800 9 NQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMD 49 (203)
Q Consensus 9 ~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~ 49 (203)
+-+--|...++.|++....+++.-+.+...++.++..|...
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334455556666666666666666666777777766543
No 42
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.99 E-value=49 Score=21.59 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q 028800 12 MDLKFTSKSLQRQARKCEKEEKA 34 (203)
Q Consensus 12 ~~lr~~~r~L~re~~kle~ee~k 34 (203)
+.+|.+.|.+.|++++++++-.+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777788877777776554
No 43
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.73 E-value=3.3e+02 Score=25.16 Aligned_cols=147 Identities=16% Similarity=0.084 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 16 FTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNM---DGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTIN 92 (203)
Q Consensus 16 ~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~---~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~ 92 (203)
..+=.|.+-..+|.++-..+.++|+++=.+=.. ++-|..|....|.|+-..+ --.++.+...+|++..++..-+
T Consensus 233 ~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK---~~er~~~~l~~l~~vl~~Id~s 309 (439)
T KOG2911|consen 233 GSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEK---DLERKVSSLNNLETVLSQIDNS 309 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhh
Confidence 445567788888888888888888877655432 2245566666665554443 3334444445555565555555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhcCCCCCCCchHHHHHHHHHHHHHhcch
Q 028800 93 KSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAE------FMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE 166 (203)
Q Consensus 93 ~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e------~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~ 166 (203)
..=+-+-.+++.-+.. +..+-+.+-.-++--+-++-+.+ =++++|.+.. ....+.-|+-|++=+.+.-.|
T Consensus 310 ~~nkvvl~AyksGs~a--lK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~de~lEkEL~~L~~D 385 (439)
T KOG2911|consen 310 QTNKVVLQAYKSGSEA--LKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFEDEDLEKELEDLEAD 385 (439)
T ss_pred cccHHHHHHHHHhHHH--HHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccchHHHHHHHHHHHhc
Confidence 5555666777776666 33333323333333333333333 3344554432 233466677777777777554
Q ss_pred hhc
Q 028800 167 VSV 169 (203)
Q Consensus 167 ~~~ 169 (203)
...
T Consensus 386 ~~k 388 (439)
T KOG2911|consen 386 EKK 388 (439)
T ss_pred ccc
Confidence 433
No 44
>COG1422 Predicted membrane protein [Function unknown]
Probab=37.38 E-value=2.2e+02 Score=23.52 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 26 RKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVAR 81 (203)
Q Consensus 26 ~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~ 81 (203)
+++++..+..+++.++|-++||.+..+ |.+....++......|...+++
T Consensus 75 ~~~qk~m~efq~e~~eA~~~~d~~~lk-------kLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 75 KELQKMMKEFQKEFREAQESGDMKKLK-------KLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788888899999999977655 4454445555555555555444
No 45
>PF15205 PLAC9: Placenta-specific protein 9
Probab=37.10 E-value=88 Score=21.31 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhcchhhcCCCCCCCCCCC
Q 028800 125 FVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180 (203)
Q Consensus 125 ~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~gi~~~~~l~~~p~~~~~ 180 (203)
...++++++++..+.+-. +-||-.++..+. ++.-.||..|-+|.+
T Consensus 24 ~~RLdviEe~veKTVEhL------eaEvk~LLg~le-----elawnlP~gp~sp~p 68 (74)
T PF15205_consen 24 HSRLDVIEETVEKTVEHL------EAEVKGLLGLLE-----ELAWNLPPGPFSPAP 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-----HHhccCCCCCCCCCc
Confidence 456788888888876653 667888887764 344566666655443
No 46
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.18 E-value=3.7e+02 Score=25.19 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH---HH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 17 TSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARI---YA--ENSI----RKRTEQMNYLRLASRLDAVVARLDTQAK 87 (203)
Q Consensus 17 ~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari---~A--k~lv----r~rk~~~~l~~~~aqL~~v~~~l~~a~~ 87 (203)
-+++|+..++|.+.+-.|+..+-+..-|.-|..+++. || -++| .+--...+-|++=++|-...++|-....
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~ 469 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIR 469 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777776666666655443 11 1222 1222344666777788888887655444
Q ss_pred HHHHHHHHHHHHHHHHH-------HHhcCCHHHHHHHHHHHHHHHHHH
Q 028800 88 MTTINKSMANIVKSLES-------SLATGNLQKMSETMDSFEKQFVNM 128 (203)
Q Consensus 88 ~~~~~~~m~~~~~~m~~-------~n~~m~l~~i~~~m~~f~~e~~~~ 128 (203)
.++++..-+..+.. -+-.+++++|..-.+.|.++++.+
T Consensus 470 ---~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L 514 (521)
T KOG1937|consen 470 ---ETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQL 514 (521)
T ss_pred ---HcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55555554443322 122455677777777776665543
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.58 E-value=4.2e+02 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAI 43 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~ 43 (203)
+..|+++-|=-+.|++.++...+..+=+.++.+-...-
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666665555555555443
No 48
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=32.51 E-value=48 Score=18.99 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=17.7
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 138 AMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 138 ~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
.|+..+ -.-..+|||..|++|..++
T Consensus 10 ~F~~~~-rGY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 10 RFKKKL-RGYDAAEVDAFLDRVADDL 34 (34)
T ss_pred cCCCCC-CCCCHHHHHHHHHHHHHhC
Confidence 344443 2456889999999998764
No 49
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=30.80 E-value=97 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Q 028800 37 LKVKKAIEKGNMDGARIYAENSIRKRTEQMN 67 (203)
Q Consensus 37 ~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~ 67 (203)
-++.+.+..||.+.|+.-|+.+.-+|+...+
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999987654
No 50
>PLN03086 PRLI-interacting factor K; Provisional
Probab=27.91 E-value=5.4e+02 Score=24.73 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028800 70 RLASRLDAVVARLDTQAKMTT 90 (203)
Q Consensus 70 ~~~aqL~~v~~~l~~a~~~~~ 90 (203)
...-+|++++.++.....+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~ 68 (567)
T PLN03086 48 QRSRRLDAIEAQIKADQQMQE 68 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444478888777764444433
No 51
>PLN02678 seryl-tRNA synthetase
Probab=27.91 E-value=4.9e+02 Score=24.11 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
.+.+..+-...|++..++..+..+.+.+-++|+...+.++ +...+.+ +.+.-..++..+..++..+..++.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~-~~~~l~~----~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE-DATELIA----ETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888877443332 2211111 344445555555566666655544
No 52
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=2.4e+02 Score=21.35 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVK 40 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK 40 (203)
+-.+..-+|....-.|+-.++.|+++++++..+++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444
No 53
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.71 E-value=1.7e+02 Score=22.93 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEK 45 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kk 45 (203)
-.+|++.+.......+++.++...++++-..+....+.+.++
T Consensus 41 ~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k 82 (151)
T PF14584_consen 41 GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQK 82 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 347888888999999999999999999999999988888775
No 54
>PF13655 RVT_N: N-terminal domain of reverse transcriptase
Probab=26.40 E-value=2.3e+02 Score=19.90 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 028800 27 KCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKR 62 (203)
Q Consensus 27 kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~r 62 (203)
++++.--++..+|-+|.+.||...++-|-+-+++..
T Consensus 8 k~~~~V~rLQ~RI~kA~~~g~~~~v~~LQklL~~S~ 43 (84)
T PF13655_consen 8 KVERKVFRLQKRIYKASQEGDWKKVRKLQKLLLRSF 43 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHch
Confidence 566777788899999999999999888877776653
No 55
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=26.04 E-value=2.6e+02 Score=20.23 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028800 90 TINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVN 127 (203)
Q Consensus 90 ~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~ 127 (203)
.+...|+.....++.+.+.-+++.+...+..|....+.
T Consensus 2 dl~~~M~~m~~~~k~~~~a~~~~e~~~~l~~m~~~a~~ 39 (103)
T PF07361_consen 2 DLEKNMKQMKKNYKQAAKADDAAEMKTALDKMRAAAED 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35668888899999999999999999999998886544
No 56
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.40 E-value=3.3e+02 Score=21.29 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 18 SKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQ 85 (203)
Q Consensus 18 ~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a 85 (203)
-..|..+...|..+...+...|+.|...||. ..|. -..-...++-...+++.-+..+|.++
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDl------sENa-ey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEVNDRGMIGDH------GDQA-EAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCc------chhh-hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567777777777777777899999999984 2221 11111233334555666666555544
No 57
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=25.25 E-value=6.8e+02 Score=24.83 Aligned_cols=50 Identities=12% Similarity=0.393 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028800 74 RLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEK 123 (203)
Q Consensus 74 qL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~ 123 (203)
+|+.|..+++.+..+-+=..........+..+...-|++.+...+.++.+
T Consensus 109 ~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~ 158 (766)
T PF10191_consen 109 ELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQR 158 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444444333333344444444444444455554444444433
No 58
>PRK07857 hypothetical protein; Provisional
Probab=25.02 E-value=2.6e+02 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 028800 10 QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGN 47 (203)
Q Consensus 10 ~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~ 47 (203)
.+-.+|.++.+||+++-+|-.+.-.+-.+|-+.-+..+
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34579999999999999999999999888887776654
No 59
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.72 E-value=2.8e+02 Score=19.82 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=14.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 12 MDLKFTSKSLQRQARKCEKEEKAEKLKVKKA 42 (203)
Q Consensus 12 ~~lr~~~r~L~re~~kle~ee~k~~~~iK~a 42 (203)
-.|...++.++.+...++++-..++.+|+.+
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555554443
No 60
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.20 E-value=2.2e+02 Score=20.40 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028800 108 TGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAG 141 (203)
Q Consensus 108 ~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~ 141 (203)
++++.+...|-.++...|...|+..+.+-.-++-
T Consensus 2 SLn~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL~~ 35 (89)
T PF10078_consen 2 SLNPEQRRATRQELQANFELSGLSLEQIAADLGT 35 (89)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 3678888999999999999999887777665544
No 61
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=22.76 E-value=4.9e+02 Score=22.26 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028800 70 RLASRLDAVVARLDTQA 86 (203)
Q Consensus 70 ~~~aqL~~v~~~l~~a~ 86 (203)
++..-|..|.-.|.++.
T Consensus 189 ~l~~dL~~ii~~lN~~~ 205 (254)
T KOG2196|consen 189 RLSEDLKQIIKSLNTMS 205 (254)
T ss_pred HHHhhHHHHHHHHHhcc
Confidence 33333333333333333
No 62
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.66 E-value=3.5e+02 Score=20.61 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 028800 38 KVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQ 112 (203)
Q Consensus 38 ~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~ 112 (203)
.|-+.+|.=+...++++. +++..++...+|..--.+++.++.+|..... .+..+.+.|..+|..++.+
T Consensus 53 ~L~~riKevd~~~~~l~~-~~~erqk~~~k~ae~L~kv~els~~L~~~~~------lL~~~v~~ie~LN~~LP~~ 120 (131)
T PF10158_consen 53 ALAKRIKEVDQEIAKLLQ-QMVERQKRFAKFAEQLEKVNELSQQLSRCQS------LLNQTVPSIETLNEILPEE 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhCChh
Confidence 333334444566677665 3444444455555555556666666554443 7888888899888886644
No 63
>PF08165 FerA: FerA (NUC095) domain; InterPro: IPR012560 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain A in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=22.54 E-value=1.9e+02 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHHhcchhhcCCCCC
Q 028800 146 STPEGEVNSLMQQVADDYGLEVSVGLPQP 174 (203)
Q Consensus 146 ~~~eeevd~ll~qv~~E~gi~~~~~l~~~ 174 (203)
..+++++.++.-+++++.--|.+..||..
T Consensus 6 ~~~~~~l~~~~~~lLdqlIeD~~~pLP~~ 34 (66)
T PF08165_consen 6 KDSEEELAELWLKLLDQLIEDCSKPLPSL 34 (66)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35678888888888888877777777765
No 64
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.33 E-value=2.9e+02 Score=20.56 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKA 42 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a 42 (203)
+.+..+..-++.....-|+-.+..|++.+..+..+++..
T Consensus 66 ~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 66 KVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777766654
No 65
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=21.64 E-value=2.8e+02 Score=20.98 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 028800 17 TSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYA 55 (203)
Q Consensus 17 ~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~A 55 (203)
+.+.++-+...|++.+..++.+|+...+.-+...|-.++
T Consensus 73 ~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~~ 111 (120)
T PF04521_consen 73 QLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVYV 111 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 457788888999999999999999988877665555554
No 66
>PLN02320 seryl-tRNA synthetase
Probab=21.60 E-value=6.9e+02 Score=23.60 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=43.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~ 84 (203)
.+.+..+-...|.+..+...+..+.+.+-++|+...+..+.+ .+.+ +.+.-..++..+..++..+..++..
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~--~l~~----~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQ--ALVE----EGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777888888888888888888888888722222221 1111 3444455555666666655555433
No 67
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.47 E-value=5.8e+02 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=14.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 11 IMDLKFTSKSLQRQARKCEKEEKAEKLKVKK 41 (203)
Q Consensus 11 ~~~lr~~~r~L~re~~kle~ee~k~~~~iK~ 41 (203)
+..|..+.+.+..+...++++...+..++..
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555444444444
Done!