Query 028800
Match_columns 203
No_of_seqs 104 out of 702
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 2.5E-49 8.5E-54 326.0 12.3 195 4-201 9-218 (218)
2 2gd5_A Charged multivesicular 100.0 2.2E-42 7.5E-47 278.1 6.1 170 4-176 9-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 99.1 4.2E-12 1.4E-16 80.8 -2.4 50 151-201 1-50 (50)
4 3frt_A Charged multivesicular 97.9 8.2E-06 2.8E-10 66.8 4.3 150 4-163 16-172 (218)
5 3um3_B Charged multivesicular 97.8 0.00011 3.8E-09 53.2 8.5 71 108-180 2-80 (104)
6 2gd5_A Charged multivesicular 97.2 0.00027 9.1E-09 55.9 3.9 148 13-163 11-164 (179)
7 4abm_A Charged multivesicular 97.2 0.011 3.9E-07 40.5 11.6 74 6-84 3-77 (79)
8 3frr_A Uncharacterized protein 97.1 0.053 1.8E-06 43.2 16.4 158 7-167 10-179 (191)
9 3ggy_A Increased sodium tolera 96.8 0.12 3.9E-06 41.3 16.0 158 7-168 9-185 (193)
10 2v6x_B DOA4-independent degrad 96.4 0.00079 2.7E-08 43.0 0.9 14 188-201 39-52 (54)
11 3ggz_E Vacuolar protein-sortin 95.7 0.008 2.7E-07 33.0 2.7 17 184-200 12-28 (29)
12 2xze_Q Charged multivesicular 88.8 0.1 3.5E-06 31.0 0.4 12 190-201 29-40 (40)
13 2luh_B Vacuolar protein-sortin 86.7 0.49 1.7E-05 30.3 2.8 54 109-162 1-54 (59)
14 2hh7_A Hypothetical protein CS 86.2 3.9 0.00013 29.8 7.8 63 61-144 9-71 (119)
15 3twe_A Alpha4H; unknown functi 76.2 1.5 5.2E-05 22.8 1.8 14 188-201 9-22 (27)
16 3aai_A Copper homeostasis oper 75.1 10 0.00035 26.3 6.5 48 61-108 13-61 (94)
17 1yzm_A FYVE-finger-containing 56.2 33 0.0011 21.1 6.3 41 29-69 8-48 (51)
18 4adz_A CSOR; transcription, co 55.3 22 0.00076 26.4 5.2 49 60-108 50-98 (136)
19 1z0k_B FYVE-finger-containing 51.9 47 0.0016 21.7 6.7 41 29-69 26-66 (69)
20 2w6b_A RHO guanine nucleotide 47.8 48 0.0016 20.6 5.8 41 4-44 5-52 (56)
21 3v1a_A Computational design, M 42.5 55 0.0019 19.8 5.7 38 30-67 8-45 (48)
22 2dq0_A Seryl-tRNA synthetase; 42.3 1.8E+02 0.0061 25.6 11.0 71 7-82 29-99 (455)
23 1wle_A Seryl-tRNA synthetase; 37.9 2.2E+02 0.0076 25.4 11.4 40 8-47 69-108 (501)
24 2r6a_C DNAG primase, helicase 37.1 83 0.0028 22.0 5.9 37 29-65 104-140 (143)
25 3htu_B Vacuolar protein-sortin 31.7 67 0.0023 18.5 3.6 29 7-35 7-35 (39)
26 1z0j_B FYVE-finger-containing 28.8 1.1E+02 0.0038 19.3 6.7 40 29-68 15-54 (59)
27 3qne_A Seryl-tRNA synthetase, 27.6 3.3E+02 0.011 24.2 11.3 70 8-82 32-101 (485)
28 1gp8_A Protein (scaffolding pr 26.9 42 0.0014 19.4 2.1 26 33-58 11-36 (40)
29 2avr_X Adhesion A; antiparalle 26.4 1.8E+02 0.0063 20.9 9.0 93 16-123 9-103 (119)
30 1t3j_A Mitofusin 1; coiled coi 22.5 2E+02 0.0067 19.9 6.2 27 7-33 45-71 (96)
31 1wrd_A TOM1, target of MYB pro 21.6 1.5E+02 0.005 20.5 4.7 43 94-136 17-64 (103)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=325.98 Aligned_cols=195 Identities=17% Similarity=0.266 Sum_probs=138.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
+..+++|.+.||++.|+|+|++++|+++|++++.+||+++++||+++|||||+++||+|+++.+||++++||++|+++|+
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlq 88 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK 88 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
+++++.+|+++|++++++|+.+|++||+|+|+.+|++|++||+++|++++||+|+|++.++.+++++|+|++|++|++|+
T Consensus 89 t~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi 168 (218)
T 3frt_A 89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI 168 (218)
T ss_dssp HHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred cchhhcCCCCCCCC---CCCcc-----ccc-------CCcHHHHHHHHHHHhc
Q 028800 164 GLEVSVGLPQPAAH---AVPTK-----QQE-------KVDEDDLSRRLAELKA 201 (203)
Q Consensus 164 gi~~~~~l~~~p~~---~~~~~-----~~~-------~~~~ddl~~RL~~Lr~ 201 (203)
|. ++|+.+|++ +.|.+ ++. ++..+++.+||++||+
T Consensus 169 ~~---~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 169 TA---GALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp -----------------------------------------------------
T ss_pred hH---hHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 94 556666643 12211 011 1224578999999995
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=2.2e-42 Score=278.05 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLD 83 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~ 83 (203)
+..|++|.+.||+++|+|+|++++|++++++++.+||+++++||.++||+||+++||+|++..+|+.++++|++|+++|+
T Consensus 9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lq 88 (179)
T 2gd5_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK 88 (179)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
++.++..++++|++++++|+.+|+.||+|+|+.+|++|+++++++|+++++|+|+|+++++++++++++|+++++|++|+
T Consensus 89 t~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~ 168 (179)
T 2gd5_A 89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEI 168 (179)
T ss_dssp HHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred cchhhcCCCCCCC
Q 028800 164 GLEVSVGLPQPAA 176 (203)
Q Consensus 164 gi~~~~~l~~~p~ 176 (203)
|+ .+||.+|+
T Consensus 169 ~~---~~l~~~P~ 178 (179)
T 2gd5_A 169 TA---GALGKAPS 178 (179)
T ss_dssp -------------
T ss_pred hH---hhcccCCC
Confidence 95 47877765
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.07 E-value=4.2e-12 Score=80.79 Aligned_cols=50 Identities=38% Similarity=0.643 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcchhhcCCCCCCCCCCCcccccCCcHHHHHHHHHHHhc
Q 028800 151 EVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSRRLAELKA 201 (203)
Q Consensus 151 evd~ll~qv~~E~gi~~~~~l~~~p~~~~~~~~~~~~~~ddl~~RL~~Lr~ 201 (203)
+||++|+||++|+|++++.+|+.+|.++++.+ +...++|+|.+||++||+
T Consensus 1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~-~~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 1 QVDMLLQEMADEAGLDLNMELPQGQTGSVGTS-VASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCCHHHHHHHHHTTCC---------CHHHHHH-HHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHhCchHHhhcccccccccCCC-CCcccHHHHHHHHHHHhC
Confidence 47899999999999999999999876543222 223469999999999995
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=97.90 E-value=8.2e-06 Score=66.78 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLK-----VKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAV 78 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~-----iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v 78 (203)
+..|....++|-+.++.|+++-+++..+-++.-++ +|-.++ +.-..|-+...+.+.+ .++.....+|...
T Consensus 16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk--elVR~Rk~~~rl~~~k---aqL~sV~~rlqt~ 90 (218)
T 3frt_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK--EMIRSRKAVSKLYASK---AHMNSVLMGMKNQ 90 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34466666666666666666666665555443222 111111 1222232333333333 4445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 028800 79 VARLDTQAKMTTINKSMANIVKSL--ESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLM 156 (203)
Q Consensus 79 ~~~l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll 156 (203)
......+.++..++.+|+.+...| ..+... ..++++-+.++ -..-++.+++|+++++....+++.+++|+.++
T Consensus 91 ~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~t--M~efekE~~k~---~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVl 165 (218)
T 3frt_A 91 LAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT--MRELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL 165 (218)
T ss_dssp HHCC----CCCCCHHHHHHHHHSTTSHHHHHH--HHHHHHHHHHH---SCC----------------CTTSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHHHHh---hhHHHHHHHHHhcccccCCchHHHHHHHHHHH
Confidence 655555566666666666666665 455444 44444433332 12223566666666655444556666777777
Q ss_pred HHHHHHh
Q 028800 157 QQVADDY 163 (203)
Q Consensus 157 ~qv~~E~ 163 (203)
+++....
T Consensus 166 dEi~~~~ 172 (218)
T 3frt_A 166 FEITAGA 172 (218)
T ss_dssp HTC----
T ss_pred HHHhHhH
Confidence 7666543
No 5
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=97.81 E-value=0.00011 Score=53.22 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh----cchh----hcCCCCCCCCCC
Q 028800 108 TGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY----GLEV----SVGLPQPAAHAV 179 (203)
Q Consensus 108 ~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~----gi~~----~~~l~~~p~~~~ 179 (203)
.|++++|..+|+++..+++..+-++++++..++. +...+++|++..+..+..+. -+++ ...||.+|+.+.
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~l 79 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIAL 79 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcC
Confidence 5899999999999999999999999998886532 12234556666555555442 2222 235888887765
Q ss_pred C
Q 028800 180 P 180 (203)
Q Consensus 180 ~ 180 (203)
|
T Consensus 80 p 80 (104)
T 3um3_B 80 P 80 (104)
T ss_pred C
Confidence 4
No 6
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.18 E-value=0.00027 Score=55.91 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=79.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 13 DLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRK-RTEQMNYLRLASRLDAVVARLDTQAKMTTI 91 (203)
Q Consensus 13 ~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~ 91 (203)
.||...+.|.+.++.|+++..++..+-|+....= ..+++--..+.+|. =++..+.-+...+|....++|+......+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999988887776543321 22222222233331 223334445677777888888888887777
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHH---HHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 028800 92 NKSMANIVKSLESSLATGNLQKMSETM--DSFEKQFVNME---VQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163 (203)
Q Consensus 92 ~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~~e~~~~~---i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E~ 163 (203)
..++..++.+|+.+.+. +..+...| ++++.-|.++. ..-++++++|++++++..++++.++.++.+.+.+
T Consensus 90 ~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 77777777777776665 34444444 55555555554 4444447788888766544555555555554443
No 7
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.16 E-value=0.011 Score=40.48 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 028800 6 KLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRT-EQMNYLRLASRLDAVVARLDT 84 (203)
Q Consensus 6 ~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk-~~~~l~~~~aqL~~v~~~l~~ 84 (203)
+..+++.+||.+...|++...+|+..-......+|+++ .+|.. -|..+.|.+| +...+.++.++++++..++.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~----~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKR----AALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999 55543 4666677555 455566888888888877654
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=97.07 E-value=0.053 Score=43.21 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQA 86 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~ 86 (203)
-...+..||..+..|.=-.+|-....+..+.+|-+.++.|..+.||+-+.++||-.....-|.-+---.+-+..++....
T Consensus 10 ~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~ 89 (191)
T 3frr_A 10 AERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQ 89 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667889999999988888889999999999999999999999999999999999888877766666666666655554
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhc-CCHHHHHHHHHH----HHHHHHHHHH------HHHHHHhhhcCCCCCCCchHHHHH
Q 028800 87 KMTTINKSMAN-IVKSLESSLAT-GNLQKMSETMDS----FEKQFVNMEV------QAEFMESAMAGSTSLSTPEGEVNS 154 (203)
Q Consensus 87 ~~~~~~~~m~~-~~~~m~~~n~~-m~l~~i~~~m~~----f~~e~~~~~i------~~e~m~d~~~~~~~~~~~eeevd~ 154 (203)
.+...-..+.. ++.++-...+. -++|++..+=.- |.++|...-+ ....+-.-++ ...-+.+-++.
T Consensus 90 ~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs---~~~P~~~lv~~ 166 (191)
T 3frr_A 90 SMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLS---VEAPPKILVER 166 (191)
T ss_dssp SCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTC---CSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcC---CCCcCHHHHHH
Confidence 43333334444 34445555554 789998666554 4444443311 1111111111 12355788999
Q ss_pred HHHHHHHHhcchh
Q 028800 155 LMQQVADDYGLEV 167 (203)
Q Consensus 155 ll~qv~~E~gi~~ 167 (203)
.+.+|+.++|++-
T Consensus 167 yL~EIA~~y~V~w 179 (191)
T 3frr_A 167 YLIEIAKNYNVPY 179 (191)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999764
No 9
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=96.77 E-value=0.12 Score=41.29 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=109.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQA 86 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~ 86 (203)
....+..||..+..|.=-.+|-....+..+.+|-+.++.|..+.||+-+.++||-.....-|.-+---.+-+..++....
T Consensus 9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~ 88 (193)
T 3ggy_A 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVIN 88 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999998888877665555555555554433
Q ss_pred H--------HHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHH----HHHHHHHH------HHHHHHHHhhhcCCCCCCC
Q 028800 87 K--------MTTINKSMAN-IVKSLESSLATGNLQKMSETMDS----FEKQFVNM------EVQAEFMESAMAGSTSLST 147 (203)
Q Consensus 87 ~--------~~~~~~~m~~-~~~~m~~~n~~m~l~~i~~~m~~----f~~e~~~~------~i~~e~m~d~~~~~~~~~~ 147 (203)
. ....-..+.. ++.++-......++|++..+=.- |.++|... |+...++.- ++. ..-
T Consensus 89 ~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~~P 164 (193)
T 3ggy_A 89 DISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---SVP 164 (193)
T ss_dssp TCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---CCC
T ss_pred hhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---CCc
Confidence 3 2223333444 44445555555789988655444 45555432 222222222 222 134
Q ss_pred chHHHHHHHHHHHHHhcchhh
Q 028800 148 PEGEVNSLMQQVADDYGLEVS 168 (203)
Q Consensus 148 ~eeevd~ll~qv~~E~gi~~~ 168 (203)
+.+-++..+.+|+.++|++.+
T Consensus 165 ~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 165 KEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CHHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC
Confidence 578899999999999998654
No 10
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.00079 Score=43.00 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHhc
Q 028800 188 DEDDLSRRLAELKA 201 (203)
Q Consensus 188 ~~ddl~~RL~~Lr~ 201 (203)
.+|||++||++||+
T Consensus 39 ~ddDLQARLdsLRR 52 (54)
T 2v6x_B 39 PDDDLQARLNTLKK 52 (54)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhcc
Confidence 69999999999997
No 11
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.008 Score=33.05 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.8
Q ss_pred ccCCcHHHHHHHHHHHh
Q 028800 184 QEKVDEDDLSRRLAELK 200 (203)
Q Consensus 184 ~~~~~~ddl~~RL~~Lr 200 (203)
++++.||.|.+||++||
T Consensus 12 ~~eekEDkLAqRLRALR 28 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALR 28 (29)
T ss_pred ccchhhHHHHHHHHHHc
Confidence 44577999999999999
No 12
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=88.77 E-value=0.1 Score=30.95 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhc
Q 028800 190 DDLSRRLAELKA 201 (203)
Q Consensus 190 ddl~~RL~~Lr~ 201 (203)
..|+.||++||+
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 458999999996
No 13
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=86.70 E-value=0.49 Score=30.34 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 028800 109 GNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADD 162 (203)
Q Consensus 109 m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~~~eeevd~ll~qv~~E 162 (203)
+|+.+|....+++.-.++..+.+++.++.+.+-...++.++++.+..++-+.+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 567888888889999999999999999988766543446688888888777665
No 14
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=86.16 E-value=3.9 Score=29.85 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMA 140 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~ 140 (203)
+++...||-+...|+.+|..-|+.-.....+...+..+..+++.++.. ++++-+...+.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~---------------------ILe~HL~~Cv~ 67 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV---------------------MLHNHLETCFS 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456778888999999999998888777777777777777777766544 56667777776
Q ss_pred CCCC
Q 028800 141 GSTS 144 (203)
Q Consensus 141 ~~~~ 144 (203)
....
T Consensus 68 ~a~~ 71 (119)
T 2hh7_A 68 TAVL 71 (119)
T ss_dssp TCSS
T ss_pred hHhc
Confidence 6543
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=76.19 E-value=1.5 Score=22.79 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHhc
Q 028800 188 DEDDLSRRLAELKA 201 (203)
Q Consensus 188 ~~ddl~~RL~~Lr~ 201 (203)
+.+||+.||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999986
No 16
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=75.14 E-value=10 Score=26.30 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 028800 61 KRTEQMNYLRLASRLDAVVARLDTQA-KMTTINKSMANIVKSLESSLAT 108 (203)
Q Consensus 61 ~rk~~~~l~~~~aqL~~v~~~l~~a~-~~~~~~~~m~~~~~~m~~~n~~ 108 (203)
+++...||-+...|+.+|..-|+.-. ....+...+..+..+++.++..
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~ 61 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999998887777 7777777777777777666544
No 17
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=56.17 E-value=33 Score=21.12 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 29 EKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
..+..-++.-|+.|.+.|..+-+.+|..|+=..+.++.++.
T Consensus 8 ~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34455567789999999999999999999987887776654
No 18
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=55.27 E-value=22 Score=26.42 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028800 60 RKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 108 (203)
Q Consensus 60 r~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~ 108 (203)
.+++...||-+...|+.+|..-|+.-.....+...+..+-.++..++..
T Consensus 50 ~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 50 QKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999999988887777777777777777666666554
No 19
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=51.93 E-value=47 Score=21.71 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 29 EKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
..+..-++.-|+.|.+.+..+-+.+|..||-..+.++.++.
T Consensus 26 ~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34555677889999999999999999999987887776653
No 20
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=47.80 E-value=48 Score=20.62 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 028800 4 TEKLLNQIMDLKFTSKSLQRQARKCE-------KEEKAEKLKVKKAIE 44 (203)
Q Consensus 4 ~~~l~~~~~~lr~~~r~L~re~~kle-------~ee~k~~~~iK~a~k 44 (203)
..+|-++...||-++.+|.++-+++. +-.+.++.-+++.++
T Consensus 5 EKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 5 SKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777777777766665553 333444555555544
No 21
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=42.52 E-value=55 Score=19.81 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Q 028800 30 KEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMN 67 (203)
Q Consensus 30 ~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~ 67 (203)
.+..-++.-|+.|-+.+..+-+.+|-.||=....++.+
T Consensus 8 EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 8 QQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 34445566788899999999999999998777766554
No 22
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.26 E-value=1.8e+02 Score=25.58 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARL 82 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l 82 (203)
+-+.+..|-...|.+..+...|..+.+.+-++|.++.++|. +...+.+ +.+.-..++..+..++..+..++
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~-~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE-PVDELLA----KSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-CTHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888999999999999999999999998766663 2222222 23333444445555555554443
No 23
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.87 E-value=2.2e+02 Score=25.41 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGN 47 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~ 47 (203)
-+.+..|-...|.+..+...|+.+.+.+-++|.++.++|+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~ 108 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQD 108 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4566777888888888888899999999999988776653
No 24
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=37.09 E-value=83 Score=22.01 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 028800 29 EKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQ 65 (203)
Q Consensus 29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~ 65 (203)
.++-.++..+|..+...||.+.+.-++.++++.+++.
T Consensus 104 ~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 104 WLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4555667778888888999988888888888876543
No 25
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=31.70 E-value=67 Score=18.50 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEKAE 35 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~k~ 35 (203)
-+..+++|+.+...|.++.++++..-.++
T Consensus 7 qDrAIL~LK~QRDkL~qyqkri~~~~~rE 35 (39)
T 3htu_B 7 QDKAILQLKQQRDKLRQYQKRIAQQLERE 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46788999999999999998887765543
No 26
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=28.81 E-value=1.1e+02 Score=19.25 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Q 028800 29 EKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNY 68 (203)
Q Consensus 29 e~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l 68 (203)
..+..-++.-|+.|.+.|..+-+-+|..||=.......++
T Consensus 15 ~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999987676665543
No 27
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.58 E-value=3.3e+02 Score=24.24 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=41.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 8 LNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARL 82 (203)
Q Consensus 8 ~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l 82 (203)
-+.+..|-...|.+..+...|..+.+.+-++|.++.+.|+ +...+.+ +.+.-..++..+..++..+..++
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~-~~~~l~~----~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE-DAKDLIA----EKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888888888888766664 2211122 23333444444444554444443
No 28
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=26.85 E-value=42 Score=19.44 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q 028800 33 KAEKLKVKKAIEKGNMDGARIYAENS 58 (203)
Q Consensus 33 ~k~~~~iK~a~kkg~~~~ari~Ak~l 58 (203)
..++++|--|...||.+.++.+-.+|
T Consensus 11 ~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 11 DAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678889999999999999887665
No 29
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.35 E-value=1.8e+02 Score=20.90 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 16 FTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSM 95 (203)
Q Consensus 16 ~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m 95 (203)
.+.+.|+.+-..|...|..-.++-|..+..- ++.|...+ .+.+.++.-..+|....-+.-..+.+
T Consensus 9 s~l~~LEaeyq~L~~kE~qrynqeka~AE~A--------~~~L~~~~-------~m~~~i~ek~~~i~~~~~~~~yK~eY 73 (119)
T 2avr_X 9 GELQALDAEYQNLANQEEARFNEERAQADAA--------RQALAQNE-------QVYNELSQRAQRLQAEANTRFYKSQY 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHHTTSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456777787777777776666655544321 22333333 44555555555555544444444445
Q ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Q 028800 96 ANIVKSLESSLATGN--LQKMSETMDSFEK 123 (203)
Q Consensus 96 ~~~~~~m~~~n~~m~--l~~i~~~m~~f~~ 123 (203)
+..++--+.+.+.++ +..-+.+++.|+.
T Consensus 74 ~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 74 QELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444433221 4445667777765
No 30
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.52 E-value=2e+02 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 028800 7 LLNQIMDLKFTSKSLQRQARKCEKEEK 33 (203)
Q Consensus 7 l~~~~~~lr~~~r~L~re~~kle~ee~ 33 (203)
++.....|..++++|++++..+|.-..
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554433
No 31
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=21.61 E-value=1.5e+02 Score=20.53 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHH-HHHHHHH
Q 028800 94 SMANIVKSLESSLATGNLQ----KMSETMDSFEKQFVNME-VQAEFME 136 (203)
Q Consensus 94 ~m~~~~~~m~~~n~~m~l~----~i~~~m~~f~~e~~~~~-i~~e~m~ 136 (203)
.++..+.+|..|....++. .=..++.++-..+..+. .+..+++
T Consensus 17 ~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~ 64 (103)
T 1wrd_A 17 MVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIP 64 (103)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666553 22356666666666655 3344444
Done!