Query 028800
Match_columns 203
No_of_seqs 104 out of 702
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 03:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 57.2 8.6 0.00062 25.5 4.9 36 34-69 70-105 (106)
2 d1sumb_ a.7.12.1 (B:) PhoU hom 41.5 56 0.0041 23.4 8.3 50 16-69 6-55 (225)
3 d1sr2a_ a.24.10.4 (A:) Sensor- 34.7 53 0.0039 21.1 9.3 68 35-127 47-114 (116)
4 d256ba_ a.24.3.1 (A:) Cytochro 33.3 56 0.0041 21.1 6.0 37 91-127 3-39 (106)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 26.4 38 0.0028 21.7 4.2 37 5-41 61-97 (107)
6 d2jdig1 c.49.2.1 (G:1-272) ATP 22.1 35 0.0026 25.3 3.7 26 74-99 2-27 (272)
7 d1lrza1 a.2.7.4 (A:245-309) Me 20.4 83 0.006 18.6 6.9 52 24-87 4-58 (65)
8 d1t72a_ a.7.12.1 (A:) Phosphat 15.2 1.8E+02 0.013 20.1 12.9 135 19-164 14-171 (215)
9 d1ecma_ a.130.1.1 (A:) Chorism 13.7 1.4E+02 0.0099 18.0 5.2 38 10-47 2-39 (91)
10 d2cyua1 a.9.1.1 (A:2-40) E3-bi 13.0 98 0.0071 16.2 3.1 24 156-179 5-28 (39)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=57.18 E-value=8.6 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 34 AEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 34 k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
.....|..++..|+.+.|+..+.++-..|+...+.|
T Consensus 70 ~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 70 GQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 344678899999999999999999999998887655
No 2
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=41.51 E-value=56 Score=23.36 Aligned_cols=50 Identities=8% Similarity=-0.118 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 028800 16 FTSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYL 69 (203)
Q Consensus 16 ~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~ 69 (203)
....+|.+++.++-..-.........++..+|.+. |+.++..-+.+.++.
T Consensus 6 ~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~----a~~V~~~d~~Id~l~ 55 (225)
T d1sumb_ 6 EKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESL----AREVIADEEVVDQME 55 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHhHHHHHHHH
Confidence 34556666777777777777888888999999664 555555555555444
No 3
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.73 E-value=53 Score=21.12 Aligned_cols=68 Identities=7% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 028800 35 EKLKVKKAIEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKM 114 (203)
Q Consensus 35 ~~~~iK~a~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i 114 (203)
....++.++..+|.+.++-+| +++|+-...+.. ..+...+..+...-+.-|++.+
T Consensus 47 ~l~~L~~a~~~~D~~~l~~~a-------------H~LKGs~~~~Ga------------~~l~~~~~~lE~~~~~~~~~~~ 101 (116)
T d1sr2a_ 47 DVKRLYTEAATSDFAALAQTA-------------HRLKGVFAMLNL------------VPGKQLCETLEHLIREKDVPGI 101 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-------------HHHHHHHHHHTC------------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHH-------------HHHHHHHHHcCc------------hHHHHHHHHHHHHHHhCCHHHH
Confidence 345677788888766655444 223322222222 2455666666666677788888
Q ss_pred HHHHHHHHHHHHH
Q 028800 115 SETMDSFEKQFVN 127 (203)
Q Consensus 115 ~~~m~~f~~e~~~ 127 (203)
...+.+++.....
T Consensus 102 ~~ll~~le~~~~~ 114 (116)
T d1sr2a_ 102 EKYISDIDSYVKS 114 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776554
No 4
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=33.33 E-value=56 Score=21.09 Aligned_cols=37 Identities=8% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028800 91 INKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVN 127 (203)
Q Consensus 91 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~ 127 (203)
+..+|......++.+.+.-+.++|...|++|..-+..
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d 39 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALD 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4567888888888888899999999999999876554
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.41 E-value=38 Score=21.74 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 5 EKLLNQIMDLKFTSKSLQRQARKCEKEEKAEKLKVKK 41 (203)
Q Consensus 5 ~~l~~~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~ 41 (203)
.+..+..-.|......|+..+.++++..+.+..++..
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~ 97 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666665555555555443
No 6
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.05 E-value=35 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 74 RLDAVVARLDTQAKMTTINKSMANIV 99 (203)
Q Consensus 74 qL~~v~~~l~~a~~~~~~~~~m~~~~ 99 (203)
.|..+..||.+..++.+++++|+-++
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVA 27 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVA 27 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888765
No 7
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=20.44 E-value=83 Score=18.57 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028800 24 QARKCEKEEKAEKLKVKKA---IEKGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAK 87 (203)
Q Consensus 24 e~~kle~ee~k~~~~iK~a---~kkg~~~~ari~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~ 87 (203)
++..|+.+..++..+|.++ +.++ + ..+|...++-.+..|+++..-+|..+..
T Consensus 4 Yl~~L~~~~~~L~~~i~k~~~~lekn-P-----------~skK~~nk~~el~~Q~~s~~~ki~Ea~~ 58 (65)
T d1lrza1 4 YIKELNEERDILNKDLNKALKDIEKR-P-----------ENKKAHNKRDNLQQQLDANEQKIEEGKR 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-T-----------TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-C-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555433 2233 2 3466777888999999999999887765
No 8
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=15.22 E-value=1.8e+02 Score=20.08 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-------HHHHHHHH-HH-------HHHHHHHHHH
Q 028800 19 KSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKRT-------EQMNYLRL-AS-------RLDAVVARLD 83 (203)
Q Consensus 19 r~L~re~~kle~ee~k~~~~iK~a~kkg~~~~ari~Ak~lvr~rk-------~~~~l~~~-~a-------qL~~v~~~l~ 83 (203)
.+|..++.++-..-.........++..+|.+.| +.++..-. .+.+++.. -+ .+..+..-+.
T Consensus 14 ~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a----~~v~~~d~~id~l~~~I~~~~~~~l~~~~p~a~dlr~~~~~~~ 89 (215)
T d1t72a_ 14 EETKEQVIKMAKLVQEAIDKATEALNKQNVELA----EEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYK 89 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 344455555555566667778888999997654 44443222 23333211 11 1222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--------CchHHHHHH
Q 028800 84 TQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLS--------TPEGEVNSL 155 (203)
Q Consensus 84 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~~e~~~~~i~~e~m~d~~~~~~~~~--------~~eeevd~l 155 (203)
.+.....+++.....++.+.........+.. ..+..+ .....+|+.++++.....+ ..++++|.+
T Consensus 90 i~~~lERIgD~a~~ia~~~~~~~~~~~~~~~-~~l~~m------~~~v~~m~~~a~~a~~~~d~~~a~~v~~~d~~id~~ 162 (215)
T d1t72a_ 90 IVSDLERMGDEAENIAERAILLAEEPPLKPY-VNINFM------SEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDEL 162 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCC-HHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchh-HHHHHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHhhhHHHH
Confidence 3444444445555555554444443222111 111111 2245556666655443221 235667777
Q ss_pred HHHHHHHhc
Q 028800 156 MQQVADDYG 164 (203)
Q Consensus 156 l~qv~~E~g 164 (203)
..++...+-
T Consensus 163 ~~~~~~~~~ 171 (215)
T d1t72a_ 163 YHQLERELM 171 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 9
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=13.69 E-value=1.4e+02 Score=18.05 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 028800 10 QIMDLKFTSKSLQRQARKCEKEEKAEKLKVKKAIEKGN 47 (203)
Q Consensus 10 ~~~~lr~~~r~L~re~~kle~ee~k~~~~iK~a~kkg~ 47 (203)
.+-.||..+..||+++-.|-.+.-.+-.+|-..-+.++
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~ 39 (91)
T d1ecma_ 2 PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSH 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999998888888876655443
No 10
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=13.01 E-value=98 Score=16.22 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=17.0
Q ss_pred HHHHHHHhcchhhcCCCCCCCCCC
Q 028800 156 MQQVADDYGLEVSVGLPQPAAHAV 179 (203)
Q Consensus 156 l~qv~~E~gi~~~~~l~~~p~~~~ 179 (203)
+.+++.|.|++++.--+..|.+.+
T Consensus 5 arkla~e~gidl~~i~GtG~~GRI 28 (39)
T d2cyua1 5 IRRLLAEHNLDASAIKGTGVGGRL 28 (39)
T ss_dssp HHHHHHHHTCCGGGSCCCSSSSCC
T ss_pred HHHHHHHcCCCHHHCcCCCCCCcE
Confidence 467899999999875555555533
Done!