BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028802
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ ++D L S DGTL + +L T R +++ SV + R++V GS+ T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 61 VLLYSWGYFKDCSDRF-----------VGLSPNSVDALLKLDEDRVITGSENGLISLVGI 109
+ L W C V SPNS + + +++ + L+ + +
Sbjct: 129 IKL--WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-------IVSCGWDKLVKVWNL 179
Query: 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
++ H+ Y + ++ +S D S D LWDL++
Sbjct: 180 ANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144
D ++ D ++GS +G + L + + H++ + S+A S D + + S S D
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSDNRQIVSGSRD 126
Query: 145 SMLKLWDLDDILK 157
+KLW+ + K
Sbjct: 127 KTIKLWNTLGVCK 139
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ ++D L S DGTL + +L T R +++ SV + R++V GS+ T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 61 VLLYSWGYFKDCSDRF-----------VGLSPNSVDALLKLDEDRVITGSENGLISLVGI 109
+ L W C V SPNS + + +++ + L+ + +
Sbjct: 152 IKL--WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-------IVSCGWDKLVKVWNL 202
Query: 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
++ H+ Y + ++ +S D S D LWDL++
Sbjct: 203 ANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144
D ++ D ++GS +G + L + + H++ + S+A S D + + S S D
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSDNRQIVSGSRD 149
Query: 145 SMLKLWDLDDILK 157
+KLW+ + K
Sbjct: 150 KTIKLWNTLGVCK 162
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 23/159 (14%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSE----FSEEELTSVVLMKNGRKV 52
+ F+ D L +S D T+ + +K + V + E F E E+ + + R
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQ 953
Query: 53 VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPN 112
+ ++G + Y + LSP+ + G ENG I ++ ++ N
Sbjct: 954 LINGRTGQI-----DYLTEAQVSCCCLSPHL---------QYIAFGDENGAIEILELVNN 999
Query: 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
RI Q +H + + + + D K L S S D+ +++W+
Sbjct: 1000 RIFQSRFQHKK-TVWHIQFTADEKTLISSSDDAEIQVWN 1037
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLG 139
P SV + D D G E G +SLV I Q A HS+ I LA S H FL
Sbjct: 229 PTSVTWHPEKD-DTFACGDETGNVSLVNIKNPDSAQTSAVHSQN-ITGLAYSYHSSPFLA 286
Query: 140 SISHDSMLKLWDLD 153
SIS D + + D D
Sbjct: 287 SISEDCTVAVLDAD 300
>pdb|2RQY|A Chain A, Solution Structure And Dynamics Of Mouse Armet
Length = 171
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 24/142 (16%)
Query: 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSENGLISL 106
GR ++ + Y +++D DR V SP ++ + L+K R G EN L
Sbjct: 9 EGRHMLRPGDCEVCISYLGRFYQDLKDRDVTFSPATIEEELIKF--CREARGKENRLCYY 66
Query: 107 VGI-------LPNRIIQPIAEHSEYPIESLA------------LSHDRKFLGSISHDSML 147
+G + N + +P+A H P+E + L +D++ S L
Sbjct: 67 IGATDDAATKIINEVSKPLAHH--IPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKL 124
Query: 148 KLWDLDDILKGSGNNISQAAES 169
++ +L IL G AE
Sbjct: 125 RVKELKKILDDWGEMCKGCAEK 146
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSE----FSEEELTSVVLMKN--GR 50
+ F+ D L S D T+ V +K + + + E F E E T V+ + N G
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGL 953
Query: 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL 110
+++ G ++G + Y + LSP+ + V G E+G I ++ +
Sbjct: 954 QLIAG-KTGQI-----DYLPEAQVSCCCLSPHL---------EYVAFGDEDGAIKIIELP 998
Query: 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
NR+ H + + + + D K L S S DS++++W+
Sbjct: 999 NNRVFSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSE----FSEEELTSVVLMKN--GR 50
+ F+ D L S D T+ V +K + + + E F E E T V+ + N G
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGL 946
Query: 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL 110
+++ G ++G + Y + LSP+ + V G E+G I ++ +
Sbjct: 947 QLIAG-KTGQI-----DYLPEAQVSCCCLSPHL---------EYVAFGDEDGAIKIIELP 991
Query: 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
NR+ H + + + + D K L S S DS++++W+
Sbjct: 992 NNRVFSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESL---- 129
S N+VD + KLD D +I G + L V + + I PI H ++ IE +
Sbjct: 150 SANAVDIIRKLDSDVIIFGPDKNLAHYVAKVTGKTIIPIPPEGHCYVHKKFTIEDVERAK 209
Query: 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAE 168
L + K + + + ++ + DI+ +G I +A E
Sbjct: 210 KLHPNAKLM--VHPECNPEVQEHADIIVSTGGMIRRACE 246
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 32 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 81
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 151 D 151
D
Sbjct: 223 D 223
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
P + + S+ I S+ S D KFL + + D ++++WD+++ IL+G +I
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 32 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 81
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 151 D 151
D
Sbjct: 223 D 223
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 35 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 84
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 311
Query: 148 KLWDLD 153
KLW D
Sbjct: 312 KLWKSD 317
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 151 D 151
D
Sbjct: 226 D 226
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 46 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 95
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 322
Query: 148 KLWDLD 153
KLW D
Sbjct: 323 KLWKSD 328
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 151 D 151
D
Sbjct: 237 D 237
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 32 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 81
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 151 D 151
D
Sbjct: 223 D 223
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ ++ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 308
Query: 148 KLWDLD 153
KLW D
Sbjct: 309 KLWKSD 314
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 29 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 78
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 305
Query: 148 KLWDLD 153
KLW D
Sbjct: 306 KLWKSD 311
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 151 D 151
D
Sbjct: 220 D 220
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 25 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 74
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 301
Query: 148 KLWDLD 153
KLW D
Sbjct: 302 KLWKSD 307
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 151 D 151
D
Sbjct: 216 D 216
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 32 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 81
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ ++ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 308
Query: 148 KLWDLD 153
KLW D
Sbjct: 309 KLWKSD 314
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 151 D 151
D
Sbjct: 223 D 223
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 30 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 79
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 306
Query: 148 KLWDLD 153
KLW D
Sbjct: 307 KLWKSD 312
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 151 D 151
D
Sbjct: 221 D 221
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 34 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 83
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 310
Query: 148 KLWDLD 153
KLW D
Sbjct: 311 KLWKSD 316
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 151 D 151
D
Sbjct: 225 D 225
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD---- 154
S + LI + G + + I+ H + I +A S D L S S D LK+WD+
Sbjct: 45 SADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 103
Query: 155 -ILKGSGNNI 163
LKG N +
Sbjct: 104 KTLKGHSNYV 113
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 308
Query: 148 KLWDLD 153
KLW D
Sbjct: 309 KLWKSD 314
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 151 D 151
D
Sbjct: 223 D 223
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 51 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 100
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 327
Query: 148 KLWDLD 153
KLW D
Sbjct: 328 KLWKSD 333
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 151 D 151
D
Sbjct: 242 D 242
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 29 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 78
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 305
Query: 148 KLWDLD 153
KLW D
Sbjct: 306 KLWKSD 311
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 151 D 151
D
Sbjct: 220 D 220
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 53 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 102
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 329
Query: 148 KLWDLD 153
KLW D
Sbjct: 330 KLWKSD 335
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 151 D 151
D
Sbjct: 244 D 244
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 35 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 84
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 311
Query: 148 KLWDLD 153
KLW D
Sbjct: 312 KLWKSD 317
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 151 D 151
D
Sbjct: 226 D 226
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 28 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 77
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 151 D 151
D
Sbjct: 219 D 219
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 304
Query: 148 KLWDLD 153
KLW D
Sbjct: 305 KLWKSD 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136
V SPN + + + S + LI + G + + I+ H + I +A S D
Sbjct: 35 VKFSPNG---------EWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN 84
Query: 137 FLGSISHDSMLKLWDLDD-----ILKGSGNNI 163
L S S D LK+WD+ LKG N +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+++GS + + + + + ++ + HS+ P+ ++ + D + S S+D + ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSISHDSML 147
+++GSE+ L+ + + I+Q + H++ +P E++ S ++ +D +
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS------AALENDKTI 311
Query: 148 KLWDLD 153
KLW D
Sbjct: 312 KLWKSD 317
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D +++ S +GL + + ++ + + P+ + S + K++ + + D+ LKLW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 151 D 151
D
Sbjct: 226 D 226
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
V++GS + + + + + + ++ H++ I S H+RK S S D+ +++WDL++
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTD-RIYSTIYDHERKRCISASXDTTIRIWDLEN 341
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 46 MKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDALLKLDEDRVITGS 99
+ N +V S+ +++L W KD R G S D +L D ++GS
Sbjct: 392 IDNADIIVSASRDKSIIL--WKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449
Query: 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+G + L + + H++ + S+A S D + + S S D +KLW+
Sbjct: 450 WDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|2B61|A Chain A, Crystal Structure Of Homoserine Transacetylase
Length = 377
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76
G LS N+ QT ++E KN ++C + +G + YF D D
Sbjct: 39 GKLSYINV---AYQTYGTLNDE--------KNNAVLICHALTGD----AEPYFDDGRD-- 81
Query: 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGI-----------------LPNRIIQPIA 119
G N A L LD DR S N L G PN ++Q I
Sbjct: 82 -GWWQNFXGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIV 140
Query: 120 EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153
+ + +E L +SH + +G W +D
Sbjct: 141 KVQKALLEHLGISHLKAIIGGSFGGXQANQWAID 174
>pdb|1WZU|A Chain A, Crystal Structure Of Quinolinate Synthase (Nada)
Length = 300
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESL---- 129
S N+V+ + KLD D VI G + L V + + I P+ H ++ ++ +
Sbjct: 126 SANAVEVVKKLDSDVVIFGPDKNLAHYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAK 185
Query: 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAE 168
L + K + I + + ++ + DI+ +G I +A E
Sbjct: 186 KLHPNAKLM--IHPECIPEVQEKADIIASTGGMIKRACE 222
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 89 KLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147
K + + V+TGS + L+ + R+ +Q E + + S+ +SH S S D+ +
Sbjct: 45 KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104
Query: 148 KLWDLDD 154
+LWDL++
Sbjct: 105 RLWDLEN 111
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+++ SE+ I + + + H++ ++ ++ H K L S S D +KLWD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 155 I-----LKGSGNNISQAA 167
+ G +N+S +
Sbjct: 182 FECIRTMHGHDHNVSSVS 199
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53
GDGT SV L ++ F EE ++S ++MK RK V
Sbjct: 95 GDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAV 133
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 95 VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
V++GS + + + + + + ++ H++ I S H+RK S S D+ +++WDL++
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64
DG+++V + + + S +TSV G+++ G Q+GTV+ Y
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 70 KDCSDRFVGLSPNSVDALLK---LDEDRVITGSE 100
++ +D F+G +P +VD L K LD D+ IT SE
Sbjct: 297 RNFADVFIGANPLAVDLLEKMLVLDTDKRITASE 330
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 124 YPIESLALSHDRKFLGSISHDSMLKLWDL 152
YP+ S+ S KFL + D ++ W+L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 124 YPIESLALSHDRKFLGSISHDSMLKLWDL 152
YP+ S+ S KFL + D ++ W+L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 124 YPIESLALSHDRKFLGSISHDSMLKLWDL 152
YP+ S+ S KFL + D ++ W+L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 29 VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88
+ RSE S+ L + +K+V G + T+ ++ +C G + + + L
Sbjct: 126 IHCRSETSK---GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVL--CL 179
Query: 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148
+ DE +ITGS + + + + ++ + H E L L + + + S D +
Sbjct: 180 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE---AVLHLRFNNGMMVTCSKDRSIA 236
Query: 149 LWDL 152
+WD+
Sbjct: 237 VWDM 240
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 124 YPIESLALSHDRKFLGSISHDSMLKLWDL 152
YP+ S+ S KFL + D ++ W+L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 96 ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSISHDSMLKLWD 151
+ G ENG +SLV + A HS+ + L S H FL S+S D L + D
Sbjct: 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQC-VTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
LP+R ++ HS + + +ALS++ F S S D L+LW+L +
Sbjct: 58 LPDRRLE---GHSAF-VSDVALSNNGNFAVSASWDHSLRLWNLQN 98
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR 50
TL + N++KN V EFSE+EL+++V + +G
Sbjct: 24 TLMIKNVQKNDVNV--EFSEKELSALVKLPSGE 54
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+ + + LALS + F S S D L+LWDL
Sbjct: 75 HNHF-VSDLALSQENCFAISSSWDKTLRLWDL 105
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KGZ|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora
(current Name, Pectobacterium Carotovorum)
pdb|1KHD|A Chain A, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|B Chain B, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|C Chain C, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
pdb|1KHD|D Chain D, Crystal Structure Analysis Of The Anthranilate
Phosphoribosyltransferase From Erwinia Carotovora At 1.9
Resolution (Current Name, Pectobacterium Carotovorum)
Length = 345
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV-LLY 64
D ++GT GDGT S+ + T S F + V K+G + VC +G+ LL
Sbjct: 85 DFADIVGTGGDGTNSI------NISTASAFVAASCGAKV-AKHGNRSVCQPLAGSCDLLQ 137
Query: 65 SWGYFKDCS 73
++G D S
Sbjct: 138 AFGIRLDMS 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,967,817
Number of Sequences: 62578
Number of extensions: 185258
Number of successful extensions: 642
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 138
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)