Query 028802
Match_columns 203
No_of_seqs 283 out of 1420
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 02:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 5.9E-31 1.3E-35 206.1 15.4 155 1-158 457-612 (707)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-30 2.7E-35 190.2 14.7 153 1-156 121-279 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-31 3.7E-36 196.4 10.2 157 1-160 223-382 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-31 1.1E-35 193.9 10.0 157 1-160 267-425 (459)
5 KOG0279 G protein beta subunit 100.0 2.5E-29 5.5E-34 176.5 16.0 157 1-160 69-229 (315)
6 KOG0271 Notchless-like WD40 re 100.0 6.8E-30 1.5E-34 186.4 12.6 160 1-162 163-448 (480)
7 KOG0263 Transcription initiati 100.0 1.9E-29 4E-34 197.7 13.1 155 1-158 499-654 (707)
8 KOG0266 WD40 repeat-containing 100.0 1.4E-27 3E-32 187.9 20.0 158 1-160 209-371 (456)
9 KOG0266 WD40 repeat-containing 100.0 1.2E-27 2.7E-32 188.3 17.5 155 1-157 165-322 (456)
10 KOG0285 Pleiotropic regulator 100.0 3.5E-27 7.5E-32 171.1 15.4 155 1-158 157-312 (460)
11 KOG0291 WD40-repeat-containing 99.9 3.4E-26 7.4E-31 179.2 17.6 153 1-155 356-510 (893)
12 PTZ00421 coronin; Provisional 99.9 1.1E-25 2.5E-30 177.3 20.5 154 1-156 81-248 (493)
13 KOG0295 WD40 repeat-containing 99.9 4.7E-26 1E-30 165.3 16.7 159 1-162 199-373 (406)
14 KOG0279 G protein beta subunit 99.9 6E-26 1.3E-30 159.6 16.5 155 1-160 111-269 (315)
15 KOG0315 G-protein beta subunit 99.9 4E-26 8.7E-31 158.4 15.2 155 1-158 89-293 (311)
16 KOG0275 Conserved WD40 repeat- 99.9 1.5E-27 3.2E-32 171.6 8.0 161 2-164 220-389 (508)
17 KOG0273 Beta-transducin family 99.9 5.3E-26 1.2E-30 169.7 16.0 155 1-158 241-487 (524)
18 KOG0286 G-protein beta subunit 99.9 9.8E-26 2.1E-30 159.6 16.1 158 1-162 103-268 (343)
19 KOG0284 Polyadenylation factor 99.9 5.3E-27 1.2E-31 172.3 9.3 152 1-156 144-297 (464)
20 KOG0286 G-protein beta subunit 99.9 3.7E-25 8E-30 156.7 17.5 161 1-164 61-228 (343)
21 KOG0315 G-protein beta subunit 99.9 6.7E-25 1.5E-29 152.4 15.8 149 8-160 11-161 (311)
22 KOG0645 WD40 repeat protein [G 99.9 2.5E-24 5.4E-29 151.0 18.1 154 1-156 67-228 (312)
23 KOG0284 Polyadenylation factor 99.9 5.9E-26 1.3E-30 166.9 9.5 156 1-159 102-258 (464)
24 KOG0645 WD40 repeat protein [G 99.9 1E-23 2.3E-28 147.9 17.1 151 1-153 20-180 (312)
25 KOG0319 WD40-repeat-containing 99.9 2.8E-24 6E-29 168.0 15.4 153 1-156 469-622 (775)
26 PTZ00420 coronin; Provisional 99.9 2.3E-23 5E-28 165.5 20.7 151 1-155 80-250 (568)
27 PTZ00421 coronin; Provisional 99.9 2.6E-23 5.5E-28 164.1 20.5 153 3-157 28-202 (493)
28 KOG0273 Beta-transducin family 99.9 5.9E-24 1.3E-28 158.9 15.5 149 1-153 365-523 (524)
29 KOG0296 Angio-associated migra 99.9 1.4E-23 3.1E-28 152.4 17.0 158 1-161 70-228 (399)
30 KOG0292 Vesicle coat complex C 99.9 1.9E-24 4.1E-29 172.2 13.6 157 1-160 15-172 (1202)
31 KOG0282 mRNA splicing factor [ 99.9 8.9E-25 1.9E-29 163.6 9.8 154 1-158 220-377 (503)
32 KOG0283 WD40 repeat-containing 99.9 2.6E-24 5.7E-29 170.1 12.9 154 1-160 273-488 (712)
33 KOG0276 Vesicle coat complex C 99.9 6.4E-24 1.4E-28 163.7 14.3 156 1-159 103-263 (794)
34 PTZ00420 coronin; Provisional 99.9 1.9E-22 4.2E-27 160.3 20.3 143 13-158 50-202 (568)
35 KOG0265 U5 snRNP-specific prot 99.9 5.7E-23 1.2E-27 146.1 14.7 153 1-157 53-208 (338)
36 KOG0265 U5 snRNP-specific prot 99.9 5.6E-23 1.2E-27 146.1 14.4 156 1-160 96-253 (338)
37 cd00200 WD40 WD40 domain, foun 99.9 4.9E-22 1.1E-26 146.4 19.8 155 1-158 15-170 (289)
38 KOG0306 WD40-repeat-containing 99.9 2E-23 4.2E-28 163.8 12.3 151 1-154 514-665 (888)
39 KOG0277 Peroxisomal targeting 99.9 6.5E-23 1.4E-27 142.9 13.4 155 1-158 66-226 (311)
40 KOG0318 WD40 repeat stress pro 99.9 2.9E-22 6.3E-27 151.8 17.9 154 1-158 196-355 (603)
41 KOG0316 Conserved WD40 repeat- 99.9 1.1E-22 2.5E-27 140.4 14.0 157 2-160 24-220 (307)
42 KOG0285 Pleiotropic regulator 99.9 3.9E-23 8.5E-28 150.2 11.9 154 1-158 199-353 (460)
43 cd00200 WD40 WD40 domain, foun 99.9 7.1E-22 1.5E-26 145.5 18.8 157 1-160 57-214 (289)
44 KOG0276 Vesicle coat complex C 99.9 1.7E-22 3.6E-27 156.0 15.4 154 3-158 63-220 (794)
45 KOG0640 mRNA cleavage stimulat 99.9 1.3E-22 2.9E-27 145.2 13.3 153 2-157 119-295 (430)
46 PLN00181 protein SPA1-RELATED; 99.9 1.1E-21 2.4E-26 164.5 21.0 149 2-155 539-692 (793)
47 KOG0295 WD40 repeat-containing 99.9 5.7E-23 1.2E-27 149.3 11.3 155 2-158 115-270 (406)
48 KOG0293 WD40 repeat-containing 99.9 6.2E-23 1.4E-27 151.5 11.5 153 1-155 275-515 (519)
49 KOG0269 WD40 repeat-containing 99.9 4.1E-23 8.9E-28 162.3 11.0 153 2-157 94-254 (839)
50 KOG0269 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 161.4 11.8 155 2-157 140-300 (839)
51 KOG0319 WD40-repeat-containing 99.9 1.4E-22 3E-27 158.7 13.6 150 8-160 425-584 (775)
52 KOG0316 Conserved WD40 repeat- 99.9 4.7E-22 1E-26 137.4 14.7 112 2-115 66-178 (307)
53 KOG0281 Beta-TrCP (transducin 99.9 3.5E-23 7.6E-28 150.2 9.5 147 6-158 246-433 (499)
54 PLN00181 protein SPA1-RELATED; 99.9 1.7E-21 3.6E-26 163.4 20.8 152 1-156 581-741 (793)
55 KOG0278 Serine/threonine kinas 99.9 7.9E-22 1.7E-26 137.4 15.4 152 2-159 150-303 (334)
56 KOG0318 WD40 repeat stress pro 99.9 9.3E-22 2E-26 149.1 16.3 155 2-158 66-270 (603)
57 KOG0264 Nucleosome remodeling 99.9 8.4E-22 1.8E-26 146.6 15.8 156 1-158 233-409 (422)
58 KOG0264 Nucleosome remodeling 99.9 7.9E-22 1.7E-26 146.7 15.6 156 1-158 183-352 (422)
59 KOG0277 Peroxisomal targeting 99.9 4.9E-22 1.1E-26 138.6 13.3 151 2-155 111-267 (311)
60 KOG0640 mRNA cleavage stimulat 99.9 1.4E-22 3E-27 145.1 10.6 157 1-158 178-340 (430)
61 KOG0289 mRNA splicing factor [ 99.9 7.2E-22 1.6E-26 146.6 14.7 155 2-158 268-424 (506)
62 KOG0305 Anaphase promoting com 99.9 4.1E-22 8.8E-27 153.6 13.2 155 1-159 223-382 (484)
63 KOG0267 Microtubule severing p 99.9 1.7E-23 3.6E-28 163.6 5.3 158 1-161 76-234 (825)
64 KOG0643 Translation initiation 99.9 2.5E-21 5.4E-26 135.9 15.3 157 1-160 16-227 (327)
65 KOG0772 Uncharacterized conser 99.9 8.2E-22 1.8E-26 149.2 13.1 158 1-158 220-399 (641)
66 KOG0293 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 144.6 13.4 157 1-159 230-390 (519)
67 KOG0296 Angio-associated migra 99.9 4.6E-21 9.9E-26 139.6 16.0 149 1-153 154-398 (399)
68 KOG0274 Cdc4 and related F-box 99.9 4.8E-21 1E-25 151.8 17.2 150 3-160 257-408 (537)
69 KOG0313 Microtubule binding pr 99.9 2.2E-21 4.8E-26 141.9 14.0 150 2-156 200-379 (423)
70 KOG0310 Conserved WD40 repeat- 99.9 7.4E-21 1.6E-25 142.8 17.0 156 2-161 117-276 (487)
71 KOG0302 Ribosome Assembly prot 99.9 1.5E-21 3.2E-26 142.7 12.2 152 1-154 217-379 (440)
72 KOG1446 Histone H3 (Lys4) meth 99.9 1.7E-20 3.6E-25 134.3 17.3 157 1-159 106-268 (311)
73 KOG1407 WD40 repeat protein [F 99.9 6.1E-21 1.3E-25 133.6 14.7 156 1-159 70-267 (313)
74 KOG0291 WD40-repeat-containing 99.9 9.7E-21 2.1E-25 148.9 17.4 156 1-158 313-471 (893)
75 KOG0282 mRNA splicing factor [ 99.9 6.9E-22 1.5E-26 148.3 10.5 148 1-151 305-503 (503)
76 KOG1407 WD40 repeat protein [F 99.9 2.8E-21 6.1E-26 135.2 12.5 155 1-158 26-224 (313)
77 KOG0305 Anaphase promoting com 99.9 5E-21 1.1E-25 147.6 15.1 151 1-155 307-463 (484)
78 KOG0646 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 142.3 14.9 154 2-156 88-310 (476)
79 KOG0973 Histone transcription 99.9 3.4E-21 7.3E-26 156.3 14.0 152 1-154 19-202 (942)
80 KOG0292 Vesicle coat complex C 99.9 7.5E-21 1.6E-25 152.0 15.5 159 1-161 99-288 (1202)
81 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.6E-25 134.5 14.9 151 1-158 33-189 (347)
82 KOG0281 Beta-TrCP (transducin 99.9 2E-21 4.2E-26 141.2 11.1 144 6-158 329-482 (499)
83 KOG0294 WD40 repeat-containing 99.9 1.5E-20 3.2E-25 134.7 15.3 106 5-112 51-159 (362)
84 KOG0308 Conserved WD40 repeat- 99.9 5.1E-21 1.1E-25 148.3 13.4 156 3-160 81-250 (735)
85 KOG0310 Conserved WD40 repeat- 99.9 4.5E-21 9.7E-26 144.0 12.7 151 2-157 75-229 (487)
86 KOG1273 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 134.0 15.1 155 1-156 29-229 (405)
87 KOG0289 mRNA splicing factor [ 99.9 5.3E-20 1.2E-24 136.8 16.2 148 2-151 310-460 (506)
88 KOG0275 Conserved WD40 repeat- 99.9 2.6E-21 5.5E-26 139.6 8.7 156 1-158 269-428 (508)
89 KOG1539 WD repeat protein [Gen 99.9 8.4E-20 1.8E-24 145.0 17.7 151 1-154 454-649 (910)
90 KOG0313 Microtubule binding pr 99.8 2.7E-20 5.9E-25 136.2 13.3 148 2-154 267-419 (423)
91 KOG0299 U3 snoRNP-associated p 99.8 2.4E-20 5.3E-25 139.3 12.9 153 1-158 208-361 (479)
92 KOG1446 Histone H3 (Lys4) meth 99.8 4.5E-19 9.8E-24 127.0 17.3 153 1-158 20-175 (311)
93 KOG1274 WD40 repeat protein [G 99.8 1.5E-19 3.2E-24 144.8 16.2 154 1-155 102-264 (933)
94 KOG0639 Transducin-like enhanc 99.8 2.7E-20 5.9E-25 140.9 11.1 154 2-158 426-586 (705)
95 KOG0306 WD40-repeat-containing 99.8 1.7E-19 3.6E-24 142.0 14.8 156 2-160 419-587 (888)
96 KOG0268 Sof1-like rRNA process 99.8 2E-20 4.4E-25 136.3 8.2 156 1-158 193-350 (433)
97 KOG0308 Conserved WD40 repeat- 99.8 3E-19 6.5E-24 138.6 14.9 149 4-155 127-287 (735)
98 KOG0973 Histone transcription 99.8 2.9E-19 6.3E-24 145.2 15.4 159 1-160 135-362 (942)
99 KOG0643 Translation initiation 99.8 3.3E-19 7.1E-24 125.4 13.6 149 4-154 61-318 (327)
100 KOG0772 Uncharacterized conser 99.8 2.3E-19 5E-24 136.1 12.3 156 1-158 323-492 (641)
101 KOG0288 WD40 repeat protein Ti 99.8 1.1E-19 2.4E-24 134.3 10.2 158 1-160 225-424 (459)
102 KOG0641 WD40 repeat protein [G 99.8 4.7E-18 1E-22 117.4 17.5 161 1-162 38-270 (350)
103 KOG0283 WD40 repeat-containing 99.8 8.9E-19 1.9E-23 139.1 15.9 150 1-156 375-535 (712)
104 KOG0274 Cdc4 and related F-box 99.8 2.3E-18 4.9E-23 136.8 18.2 148 7-160 218-366 (537)
105 KOG0270 WD40 repeat-containing 99.8 2.2E-18 4.7E-23 128.5 16.1 155 2-159 250-410 (463)
106 KOG0267 Microtubule severing p 99.8 9.2E-20 2E-24 142.9 8.7 153 7-162 40-193 (825)
107 KOG4283 Transcription-coupled 99.8 1.6E-18 3.5E-23 123.7 14.1 146 6-155 55-221 (397)
108 KOG2096 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 125.5 13.1 156 1-160 92-315 (420)
109 KOG1036 Mitotic spindle checkp 99.8 4E-18 8.7E-23 121.9 15.2 149 1-158 19-168 (323)
110 KOG0288 WD40 repeat protein Ti 99.8 3.2E-18 6.9E-23 126.7 14.5 141 8-151 313-459 (459)
111 KOG0303 Actin-binding protein 99.8 2.2E-18 4.8E-23 127.0 13.2 155 1-158 87-254 (472)
112 KOG1332 Vesicle coat complex C 99.8 6.5E-18 1.4E-22 117.6 14.2 148 6-155 22-195 (299)
113 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.9E-23 131.8 10.9 155 1-160 515-670 (705)
114 KOG1408 WD40 repeat protein [F 99.8 2.8E-18 6.1E-23 135.0 12.5 102 51-154 610-714 (1080)
115 PF08662 eIF2A: Eukaryotic tra 99.8 4.4E-17 9.5E-22 114.5 17.2 148 1-156 11-182 (194)
116 KOG0300 WD40 repeat-containing 99.8 9.6E-18 2.1E-22 121.0 13.4 152 2-156 279-431 (481)
117 KOG0300 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 124.9 9.5 147 8-156 161-347 (481)
118 KOG0647 mRNA export protein (c 99.8 1.8E-17 3.9E-22 118.4 14.6 153 1-155 78-283 (347)
119 KOG0641 WD40 repeat protein [G 99.8 6E-17 1.3E-21 112.0 16.0 148 3-153 190-349 (350)
120 KOG1007 WD repeat protein TSSC 99.8 1.6E-17 3.4E-22 118.2 12.8 155 1-159 129-295 (370)
121 KOG2048 WD40 repeat protein [G 99.8 8.9E-17 1.9E-21 125.4 17.7 155 1-158 31-189 (691)
122 KOG0302 Ribosome Assembly prot 99.8 3.7E-17 8E-22 120.0 14.5 147 1-151 263-436 (440)
123 KOG0278 Serine/threonine kinas 99.8 7E-19 1.5E-23 122.8 5.3 148 6-158 70-218 (334)
124 KOG0301 Phospholipase A2-activ 99.8 1.8E-17 4E-22 129.6 13.0 138 9-155 114-251 (745)
125 KOG2110 Uncharacterized conser 99.8 2.5E-16 5.5E-21 115.3 18.0 147 7-156 97-251 (391)
126 KOG4283 Transcription-coupled 99.8 4.9E-17 1.1E-21 116.2 13.4 152 3-158 109-281 (397)
127 KOG0268 Sof1-like rRNA process 99.8 1.5E-17 3.2E-22 121.5 11.0 151 4-158 75-307 (433)
128 KOG0294 WD40 repeat-containing 99.7 8.3E-17 1.8E-21 115.7 14.4 145 9-158 3-162 (362)
129 KOG0299 U3 snoRNP-associated p 99.7 1.9E-17 4.2E-22 124.0 11.4 151 1-154 148-317 (479)
130 KOG1445 Tumor-specific antigen 99.7 1.3E-17 2.8E-22 129.8 10.7 153 3-158 587-755 (1012)
131 KOG0771 Prolactin regulatory e 99.7 2.5E-17 5.4E-22 122.1 11.8 151 1-154 150-355 (398)
132 KOG0649 WD40 repeat protein [G 99.7 2.2E-16 4.7E-21 110.1 15.1 155 2-160 17-193 (325)
133 KOG2055 WD40 repeat protein [G 99.7 5.6E-17 1.2E-21 121.7 12.9 152 1-153 350-512 (514)
134 KOG1445 Tumor-specific antigen 99.7 1.2E-17 2.7E-22 129.9 9.4 154 1-156 633-801 (1012)
135 KOG0303 Actin-binding protein 99.7 4.5E-17 9.8E-22 120.2 11.7 126 32-160 76-210 (472)
136 KOG1188 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 115.3 13.5 146 8-155 41-198 (376)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.8E-15 3.9E-20 113.1 19.2 151 1-157 36-191 (300)
138 KOG4328 WD40 protein [Function 99.7 2E-16 4.2E-21 118.7 12.8 151 1-153 192-399 (498)
139 KOG1332 Vesicle coat complex C 99.7 6.3E-17 1.4E-21 112.7 9.4 146 6-153 69-241 (299)
140 KOG2055 WD40 repeat protein [G 99.7 6.8E-16 1.5E-20 115.9 15.5 156 1-156 219-420 (514)
141 KOG0301 Phospholipase A2-activ 99.7 4.5E-16 9.8E-21 121.9 14.9 140 5-155 150-290 (745)
142 KOG1007 WD repeat protein TSSC 99.7 2.9E-16 6.3E-21 111.9 12.7 151 2-155 177-363 (370)
143 KOG2096 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 113.1 12.9 143 5-151 197-400 (420)
144 KOG2048 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 119.3 16.8 160 1-162 75-242 (691)
145 KOG1274 WD40 repeat protein [G 99.7 7.1E-16 1.5E-20 124.1 16.0 153 1-158 19-173 (933)
146 KOG1034 Transcriptional repres 99.7 5.2E-16 1.1E-20 112.2 13.7 153 1-153 141-383 (385)
147 KOG1036 Mitotic spindle checkp 99.7 5.7E-16 1.2E-20 111.0 13.8 152 3-157 102-266 (323)
148 KOG4378 Nuclear protein COP1 [ 99.7 1.6E-16 3.5E-21 120.5 11.3 151 5-158 89-285 (673)
149 KOG2919 Guanine nucleotide-bin 99.7 3.2E-16 6.9E-21 113.2 12.1 151 1-155 164-329 (406)
150 KOG0322 G-protein beta subunit 99.7 2.5E-16 5.5E-21 110.8 10.5 142 9-152 167-322 (323)
151 KOG1273 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 108.1 15.9 155 1-159 71-328 (405)
152 KOG3881 Uncharacterized conser 99.7 1.2E-15 2.6E-20 112.5 13.8 146 8-155 162-322 (412)
153 KOG0321 WD40 repeat-containing 99.7 1.2E-15 2.7E-20 118.6 14.6 157 1-158 106-306 (720)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 8.2E-15 1.8E-19 109.6 18.6 145 7-157 1-149 (300)
155 KOG1009 Chromatin assembly com 99.7 4.3E-16 9.3E-21 115.3 10.5 153 2-156 20-198 (434)
156 KOG2106 Uncharacterized conser 99.7 4.3E-15 9.3E-20 113.0 16.0 149 1-156 374-524 (626)
157 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-15 3.3E-20 116.5 13.5 109 1-110 300-426 (577)
158 KOG1063 RNA polymerase II elon 99.7 2.1E-15 4.6E-20 118.3 13.4 151 1-153 531-699 (764)
159 KOG0646 WD40 repeat protein [G 99.7 2E-15 4.4E-20 113.4 12.4 146 8-156 51-209 (476)
160 KOG1272 WD40-repeat-containing 99.7 4.2E-16 9.1E-21 117.3 8.8 155 2-159 136-329 (545)
161 KOG2445 Nuclear pore complex c 99.7 3.2E-14 6.9E-19 102.3 17.0 153 1-156 19-259 (361)
162 KOG2919 Guanine nucleotide-bin 99.6 4.2E-15 9.1E-20 107.5 11.6 142 1-144 213-361 (406)
163 KOG2394 WD40 protein DMR-N9 [G 99.6 4.4E-15 9.5E-20 113.7 11.8 93 37-132 290-383 (636)
164 KOG1408 WD40 repeat protein [F 99.6 5.2E-15 1.1E-19 116.9 12.2 157 9-167 394-640 (1080)
165 KOG0270 WD40 repeat-containing 99.6 7.1E-15 1.5E-19 110.0 12.1 147 6-156 191-363 (463)
166 KOG0650 WD40 repeat nucleolar 99.6 1.6E-15 3.5E-20 117.3 9.0 148 1-150 572-732 (733)
167 KOG1523 Actin-related protein 99.6 1.4E-14 3E-19 104.6 12.6 151 1-152 16-175 (361)
168 KOG1188 WD40 repeat protein [G 99.6 1.9E-14 4.2E-19 104.6 13.4 151 7-159 84-248 (376)
169 COG2319 FOG: WD40 repeat [Gene 99.6 1.3E-13 2.7E-18 106.6 19.0 154 1-158 161-319 (466)
170 KOG0290 Conserved WD40 repeat- 99.6 2E-14 4.4E-19 102.7 12.9 150 6-157 162-322 (364)
171 KOG0307 Vesicle coat complex C 99.6 1.8E-15 4E-20 124.2 8.0 155 1-158 122-289 (1049)
172 KOG1034 Transcriptional repres 99.6 1E-13 2.2E-18 100.6 15.7 144 9-156 57-214 (385)
173 PRK01742 tolB translocation pr 99.6 5.8E-14 1.3E-18 110.5 15.3 148 1-157 209-365 (429)
174 KOG2111 Uncharacterized conser 99.6 2.7E-13 5.8E-18 97.9 17.1 148 8-157 105-260 (346)
175 KOG0321 WD40 repeat-containing 99.6 4.6E-14 1E-18 110.0 13.2 150 7-159 64-254 (720)
176 KOG2445 Nuclear pore complex c 99.6 1.9E-13 4E-18 98.4 15.0 146 7-155 73-320 (361)
177 KOG2106 Uncharacterized conser 99.6 3.6E-13 7.7E-18 102.7 16.9 150 1-155 252-479 (626)
178 PRK02889 tolB translocation pr 99.6 3.5E-13 7.6E-18 106.0 17.5 154 1-158 201-365 (427)
179 KOG1524 WD40 repeat-containing 99.6 4.2E-14 9.1E-19 108.6 11.4 127 2-134 111-238 (737)
180 KOG0307 Vesicle coat complex C 99.6 9.8E-15 2.1E-19 120.0 8.2 154 1-156 167-330 (1049)
181 KOG1009 Chromatin assembly com 99.6 2.6E-13 5.7E-18 100.7 14.8 68 1-68 71-154 (434)
182 KOG0974 WD-repeat protein WDR6 99.5 1.1E-13 2.4E-18 112.9 12.7 154 3-160 141-295 (967)
183 KOG1310 WD40 repeat protein [G 99.5 3.6E-14 7.7E-19 109.2 9.2 154 1-155 56-233 (758)
184 KOG0650 WD40 repeat nucleolar 99.5 2.1E-13 4.5E-18 105.9 13.4 150 1-155 406-639 (733)
185 KOG2394 WD40 protein DMR-N9 [G 99.5 9E-14 2E-18 106.6 11.2 150 5-156 183-365 (636)
186 KOG4227 WD40 repeat protein [G 99.5 2.9E-13 6.3E-18 100.6 13.3 155 1-156 62-228 (609)
187 PRK01742 tolB translocation pr 99.5 2.7E-13 5.9E-18 106.7 14.1 144 1-153 253-401 (429)
188 KOG1538 Uncharacterized conser 99.5 4.4E-14 9.5E-19 111.1 9.3 143 1-152 18-161 (1081)
189 KOG2110 Uncharacterized conser 99.5 3.5E-12 7.6E-17 93.9 18.6 153 2-156 134-333 (391)
190 KOG1539 WD repeat protein [Gen 99.5 7.1E-13 1.5E-17 106.3 16.1 143 8-153 173-318 (910)
191 KOG4378 Nuclear protein COP1 [ 99.5 1.9E-13 4E-18 104.2 12.2 131 1-135 170-305 (673)
192 COG2319 FOG: WD40 repeat [Gene 99.5 2.1E-12 4.6E-17 99.7 18.6 150 4-157 119-275 (466)
193 PRK11028 6-phosphogluconolacto 99.5 2E-12 4.3E-17 98.6 18.1 151 1-154 40-206 (330)
194 PRK05137 tolB translocation pr 99.5 1.3E-12 2.8E-17 103.2 17.1 150 1-156 207-369 (435)
195 KOG0649 WD40 repeat protein [G 99.5 2.7E-12 5.9E-17 89.9 15.7 148 2-157 121-278 (325)
196 PRK11028 6-phosphogluconolacto 99.5 1.5E-12 3.3E-17 99.2 16.0 149 1-153 131-304 (330)
197 PRK03629 tolB translocation pr 99.5 2.3E-12 5.1E-17 101.4 16.7 151 1-156 248-409 (429)
198 KOG4328 WD40 protein [Function 99.5 6.2E-13 1.3E-17 100.2 12.2 154 2-156 286-453 (498)
199 PRK03629 tolB translocation pr 99.5 4.4E-12 9.5E-17 99.8 17.2 151 1-157 204-367 (429)
200 KOG1310 WD40 repeat protein [G 99.5 2.2E-13 4.9E-18 104.9 9.2 124 30-156 43-181 (758)
201 PRK04922 tolB translocation pr 99.5 6E-12 1.3E-16 99.3 17.3 152 1-158 209-373 (433)
202 KOG1063 RNA polymerase II elon 99.5 3.6E-13 7.9E-18 106.0 10.1 122 31-155 519-650 (764)
203 KOG1523 Actin-related protein 99.5 1.1E-12 2.3E-17 95.0 11.4 154 1-157 61-240 (361)
204 PF08662 eIF2A: Eukaryotic tra 99.5 2.9E-12 6.3E-17 90.1 13.4 110 1-118 65-186 (194)
205 TIGR02800 propeller_TolB tol-p 99.5 8E-12 1.7E-16 98.2 17.2 149 2-156 196-357 (417)
206 KOG0642 Cell-cycle nuclear pro 99.4 6E-13 1.3E-17 102.5 9.4 124 32-157 289-430 (577)
207 KOG1517 Guanine nucleotide bin 99.4 4.6E-12 9.9E-17 104.3 14.6 155 2-158 1172-1338(1387)
208 KOG1587 Cytoplasmic dynein int 99.4 2.8E-12 6E-17 102.0 13.1 155 2-158 249-477 (555)
209 PRK04922 tolB translocation pr 99.4 1.1E-11 2.3E-16 97.9 16.4 148 1-155 253-413 (433)
210 PF02239 Cytochrom_D1: Cytochr 99.4 3.9E-11 8.5E-16 92.3 18.4 151 2-157 43-206 (369)
211 KOG1524 WD40 repeat-containing 99.4 1.9E-12 4E-17 99.7 10.9 143 8-156 76-219 (737)
212 PRK01029 tolB translocation pr 99.4 2.2E-11 4.8E-16 95.7 17.3 153 2-157 237-407 (428)
213 KOG3881 Uncharacterized conser 99.4 2.1E-12 4.6E-17 95.6 10.5 132 2-136 209-344 (412)
214 KOG1272 WD40-repeat-containing 99.4 6.7E-13 1.5E-17 100.3 7.8 145 1-151 215-360 (545)
215 KOG1538 Uncharacterized conser 99.4 1.7E-11 3.7E-16 96.9 15.4 149 1-155 138-295 (1081)
216 KOG0644 Uncharacterized conser 99.4 2.1E-13 4.6E-18 109.5 4.0 115 32-153 185-300 (1113)
217 KOG1963 WD40 repeat protein [G 99.4 3E-11 6.6E-16 97.4 16.2 153 2-158 167-327 (792)
218 PRK02889 tolB translocation pr 99.4 2.6E-11 5.6E-16 95.5 15.6 148 1-153 245-403 (427)
219 KOG2139 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 89.8 13.8 153 1-156 201-386 (445)
220 PRK05137 tolB translocation pr 99.4 3.9E-11 8.4E-16 94.8 16.5 149 2-157 252-416 (435)
221 PRK00178 tolB translocation pr 99.4 6E-11 1.3E-15 93.7 17.3 150 2-157 205-367 (430)
222 KOG1517 Guanine nucleotide bin 99.4 1.2E-11 2.5E-16 102.0 13.2 147 6-155 1220-1383(1387)
223 KOG1963 WD40 repeat protein [G 99.4 2.3E-11 5E-16 98.1 14.6 154 2-158 212-380 (792)
224 PRK04792 tolB translocation pr 99.4 8.4E-11 1.8E-15 93.1 17.2 150 2-157 224-386 (448)
225 KOG1240 Protein kinase contain 99.4 6E-11 1.3E-15 99.1 16.4 156 4-160 1058-1232(1431)
226 KOG2321 WD40 repeat protein [G 99.4 1.8E-11 4E-16 94.9 12.6 149 10-160 148-309 (703)
227 KOG2139 WD40 repeat protein [G 99.4 2.6E-11 5.7E-16 89.3 12.6 150 1-153 104-268 (445)
228 KOG0771 Prolactin regulatory e 99.3 1.1E-11 2.5E-16 92.4 10.5 117 41-160 148-318 (398)
229 KOG2315 Predicted translation 99.3 1.5E-10 3.3E-15 89.5 16.3 131 16-155 250-392 (566)
230 KOG0644 Uncharacterized conser 99.3 1.7E-12 3.8E-17 104.3 5.9 103 2-110 197-300 (1113)
231 KOG0290 Conserved WD40 repeat- 99.3 5.1E-11 1.1E-15 85.5 11.6 145 1-149 202-361 (364)
232 KOG2111 Uncharacterized conser 99.3 4.8E-10 1E-14 81.4 15.6 97 14-111 156-257 (346)
233 PRK01029 tolB translocation pr 99.3 5.6E-10 1.2E-14 87.9 16.7 155 2-158 191-364 (428)
234 KOG4547 WD40 repeat-containing 99.3 6.1E-10 1.3E-14 86.6 16.3 147 6-157 69-224 (541)
235 PF02239 Cytochrom_D1: Cytochr 99.3 1.8E-09 4E-14 83.2 19.0 146 7-155 5-160 (369)
236 KOG1587 Cytoplasmic dynein int 99.3 1.2E-10 2.6E-15 92.8 12.8 153 2-156 354-519 (555)
237 KOG2321 WD40 repeat protein [G 99.3 1.2E-10 2.5E-15 90.6 12.0 153 2-158 182-348 (703)
238 KOG4497 Uncharacterized conser 99.3 4.1E-10 8.9E-15 82.4 14.0 148 2-154 55-241 (447)
239 KOG0974 WD-repeat protein WDR6 99.2 4.6E-10 1E-14 92.3 15.2 144 6-154 98-247 (967)
240 KOG4227 WD40 repeat protein [G 99.2 2.1E-10 4.6E-15 85.7 11.8 125 32-156 51-182 (609)
241 KOG3914 WD repeat protein WDR4 99.2 5.2E-10 1.1E-14 83.4 13.3 155 2-160 69-230 (390)
242 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 84.3 16.3 152 4-159 2-178 (541)
243 PRK00178 tolB translocation pr 99.2 1.4E-09 3.1E-14 85.9 16.5 147 2-155 249-408 (430)
244 TIGR02800 propeller_TolB tol-p 99.2 1.5E-09 3.3E-14 85.3 16.7 147 1-154 239-398 (417)
245 PF15492 Nbas_N: Neuroblastoma 99.2 1.7E-08 3.7E-13 72.7 19.4 163 1-164 49-270 (282)
246 PRK04792 tolB translocation pr 99.2 1.7E-09 3.8E-14 85.7 16.1 147 2-155 268-427 (448)
247 KOG0280 Uncharacterized conser 99.2 2.4E-09 5.2E-14 77.1 14.8 145 10-156 88-244 (339)
248 PF10282 Lactonase: Lactonase, 99.1 1.9E-08 4.2E-13 77.2 19.4 152 1-153 149-322 (345)
249 PRK04043 tolB translocation pr 99.1 1.1E-08 2.4E-13 80.2 17.7 148 2-157 194-361 (419)
250 KOG0280 Uncharacterized conser 99.1 2.5E-09 5.5E-14 77.0 12.3 149 1-153 127-284 (339)
251 COG4946 Uncharacterized protei 99.1 2.7E-08 5.9E-13 76.3 18.1 144 6-156 331-480 (668)
252 PF10282 Lactonase: Lactonase, 99.1 6.4E-08 1.4E-12 74.3 20.1 153 1-153 42-222 (345)
253 COG2706 3-carboxymuconate cycl 99.1 3.9E-08 8.6E-13 72.8 17.3 154 1-155 45-223 (346)
254 PLN02919 haloacid dehalogenase 99.1 3.7E-08 8.1E-13 85.2 19.4 156 1-157 688-892 (1057)
255 KOG4497 Uncharacterized conser 99.0 1.7E-09 3.6E-14 79.2 8.9 135 2-142 15-152 (447)
256 KOG1064 RAVE (regulator of V-A 99.0 6.8E-10 1.5E-14 96.1 7.7 146 1-161 2257-2406(2439)
257 KOG0322 G-protein beta subunit 99.0 5.2E-10 1.1E-14 79.5 5.8 97 11-109 221-322 (323)
258 KOG2695 WD40 repeat protein [G 99.0 2.5E-09 5.3E-14 78.8 9.4 145 11-159 228-382 (425)
259 KOG1409 Uncharacterized conser 99.0 1.4E-08 3E-13 74.8 11.8 98 12-110 170-270 (404)
260 PF00400 WD40: WD domain, G-be 99.0 2.7E-09 5.8E-14 54.8 5.8 39 112-151 1-39 (39)
261 KOG1064 RAVE (regulator of V-A 99.0 3.9E-09 8.4E-14 91.6 9.2 153 4-163 2217-2376(2439)
262 KOG4190 Uncharacterized conser 98.9 8.5E-09 1.8E-13 80.6 10.0 151 6-159 746-912 (1034)
263 PF00400 WD40: WD domain, G-be 98.9 4.5E-09 9.7E-14 53.9 5.9 39 27-65 1-39 (39)
264 KOG1354 Serine/threonine prote 98.9 2.3E-08 5.1E-13 73.7 11.6 156 1-159 170-365 (433)
265 PRK04043 tolB translocation pr 98.9 1.2E-07 2.6E-12 74.5 16.4 146 2-155 239-402 (419)
266 TIGR02658 TTQ_MADH_Hv methylam 98.9 6.6E-07 1.4E-11 68.2 19.7 156 1-159 110-336 (352)
267 KOG2695 WD40 repeat protein [G 98.9 5.8E-09 1.3E-13 76.8 8.2 128 2-132 259-401 (425)
268 KOG2041 WD40 repeat protein [G 98.9 5.8E-09 1.3E-13 83.6 8.7 152 1-155 20-188 (1189)
269 COG4946 Uncharacterized protei 98.9 1.3E-07 2.9E-12 72.6 15.4 134 4-142 368-507 (668)
270 KOG3914 WD repeat protein WDR4 98.9 6.7E-09 1.5E-13 77.6 8.1 100 17-118 132-231 (390)
271 KOG1912 WD40 repeat protein [G 98.9 1.4E-07 3E-12 76.5 15.2 151 1-156 21-189 (1062)
272 KOG1334 WD40 repeat protein [G 98.9 8.7E-09 1.9E-13 78.9 7.2 157 1-158 148-317 (559)
273 KOG1334 WD40 repeat protein [G 98.9 3.9E-09 8.5E-14 80.8 5.3 149 2-152 288-465 (559)
274 KOG1240 Protein kinase contain 98.8 1.4E-07 3.1E-12 79.6 14.4 162 2-164 1105-1284(1431)
275 KOG2444 WD40 repeat protein [G 98.8 3.9E-08 8.4E-13 68.8 9.2 110 48-158 69-182 (238)
276 KOG4714 Nucleoporin [Nuclear s 98.8 1.8E-08 4E-13 71.6 6.9 146 7-155 101-256 (319)
277 KOG4532 WD40-like repeat conta 98.8 6E-07 1.3E-11 64.4 14.4 148 10-158 131-287 (344)
278 KOG1409 Uncharacterized conser 98.8 1.8E-07 4E-12 69.0 12.2 160 2-163 75-280 (404)
279 KOG1354 Serine/threonine prote 98.8 1.6E-07 3.5E-12 69.4 11.4 151 1-153 90-301 (433)
280 COG2706 3-carboxymuconate cycl 98.8 2.6E-06 5.7E-11 63.4 17.7 150 2-153 151-321 (346)
281 KOG1275 PAB-dependent poly(A) 98.8 1.6E-07 3.4E-12 77.2 12.2 142 5-151 185-340 (1118)
282 KOG4714 Nucleoporin [Nuclear s 98.8 5.5E-08 1.2E-12 69.2 8.3 112 38-151 180-316 (319)
283 KOG4532 WD40-like repeat conta 98.7 1.2E-06 2.6E-11 62.9 13.7 140 1-141 164-320 (344)
284 PF07433 DUF1513: Protein of u 98.7 5.8E-06 1.3E-10 61.3 17.4 154 2-159 57-253 (305)
285 PLN02919 haloacid dehalogenase 98.7 6E-06 1.3E-10 71.9 19.9 153 1-156 629-836 (1057)
286 PF11768 DUF3312: Protein of u 98.7 2.9E-06 6.3E-11 67.0 15.5 76 80-158 258-334 (545)
287 PF08450 SGL: SMP-30/Gluconola 98.6 1.3E-05 2.9E-10 58.6 17.9 136 1-141 91-243 (246)
288 KOG2066 Vacuolar assembly/sort 98.6 1.4E-06 3.1E-11 70.8 13.4 141 6-153 82-233 (846)
289 COG5354 Uncharacterized protei 98.6 2.4E-06 5.3E-11 66.2 14.0 147 1-156 228-398 (561)
290 KOG2314 Translation initiation 98.6 4.9E-07 1.1E-11 70.7 9.7 135 1-141 216-364 (698)
291 COG0823 TolB Periplasmic compo 98.6 2.2E-06 4.7E-11 67.3 13.1 149 2-156 199-361 (425)
292 TIGR03300 assembly_YfgL outer 98.6 5.1E-06 1.1E-10 64.7 15.0 135 7-150 241-376 (377)
293 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.7E-05 3.7E-10 60.6 16.9 112 6-121 11-147 (352)
294 KOG0309 Conserved WD40 repeat- 98.5 2.9E-07 6.3E-12 74.3 7.0 153 2-156 74-235 (1081)
295 KOG0882 Cyclophilin-related pe 98.5 2E-06 4.4E-11 65.8 11.2 157 2-161 60-239 (558)
296 PRK02888 nitrous-oxide reducta 98.5 8.9E-06 1.9E-10 65.7 15.2 123 16-142 295-450 (635)
297 COG0823 TolB Periplasmic compo 98.5 1.9E-06 4.1E-11 67.6 11.1 137 2-142 244-388 (425)
298 KOG2315 Predicted translation 98.5 2.1E-06 4.5E-11 67.2 11.1 124 1-133 276-410 (566)
299 PF13360 PQQ_2: PQQ-like domai 98.5 3.4E-05 7.4E-10 56.0 16.9 148 5-156 34-194 (238)
300 PF11768 DUF3312: Protein of u 98.5 3.2E-06 7E-11 66.8 11.9 73 35-111 257-330 (545)
301 PF15492 Nbas_N: Neuroblastoma 98.5 4.7E-05 1E-09 55.3 16.6 155 1-158 3-193 (282)
302 PF04762 IKI3: IKI3 family; I 98.5 6.2E-06 1.4E-10 70.7 13.9 150 1-155 126-335 (928)
303 KOG1832 HIV-1 Vpr-binding prot 98.5 9.8E-08 2.1E-12 78.5 2.9 134 1-139 1107-1246(1516)
304 KOG1645 RING-finger-containing 98.5 5.2E-06 1.1E-10 62.8 11.7 76 1-77 199-276 (463)
305 PF13360 PQQ_2: PQQ-like domai 98.5 2.4E-05 5.3E-10 56.7 15.2 139 16-158 2-145 (238)
306 PRK02888 nitrous-oxide reducta 98.4 1.9E-05 4.1E-10 63.9 15.2 147 3-154 200-405 (635)
307 PF07433 DUF1513: Protein of u 98.4 6.5E-05 1.4E-09 55.9 16.7 141 1-143 10-182 (305)
308 TIGR03300 assembly_YfgL outer 98.4 4.5E-05 9.8E-10 59.4 16.7 144 6-157 64-212 (377)
309 KOG2066 Vacuolar assembly/sort 98.4 1.4E-05 2.9E-10 65.4 13.7 138 7-160 49-194 (846)
310 KOG0309 Conserved WD40 repeat- 98.4 1.3E-06 2.7E-11 70.8 7.4 134 1-135 120-257 (1081)
311 PF04053 Coatomer_WDAD: Coatom 98.4 3.7E-05 8.1E-10 60.8 15.5 137 1-154 38-174 (443)
312 PF08553 VID27: VID27 cytoplas 98.4 2.6E-05 5.7E-10 65.1 15.1 143 7-152 493-646 (794)
313 PF04762 IKI3: IKI3 family; I 98.3 2.6E-05 5.7E-10 67.0 14.5 147 1-151 215-377 (928)
314 COG5170 CDC55 Serine/threonine 98.3 8.4E-06 1.8E-10 59.9 9.7 118 36-156 171-312 (460)
315 PF08450 SGL: SMP-30/Gluconola 98.3 0.00038 8.2E-09 50.9 18.8 146 2-154 46-214 (246)
316 KOG2314 Translation initiation 98.3 1.8E-05 4E-10 62.3 11.8 148 3-156 401-576 (698)
317 KOG2041 WD40 repeat protein [G 98.3 1.4E-05 3.1E-10 64.8 11.0 118 37-155 14-147 (1189)
318 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00031 6.6E-09 50.8 16.2 136 8-147 24-159 (354)
319 COG5170 CDC55 Serine/threonine 98.2 1.9E-05 4.2E-10 58.1 10.1 155 1-158 178-372 (460)
320 KOG4640 Anaphase-promoting com 98.2 4.6E-06 1E-10 66.4 7.4 87 1-89 26-114 (665)
321 KOG4190 Uncharacterized conser 98.2 2.7E-06 5.8E-11 67.0 5.8 124 30-156 728-862 (1034)
322 COG3391 Uncharacterized conser 98.2 0.00045 9.6E-09 54.0 18.1 152 1-157 121-287 (381)
323 KOG2114 Vacuolar assembly/sort 98.2 9.3E-05 2E-09 61.2 14.3 154 2-156 30-204 (933)
324 KOG3617 WD40 and TPR repeat-co 98.2 6.5E-05 1.4E-09 62.3 12.7 67 1-67 65-131 (1416)
325 PRK11138 outer membrane biogen 98.1 0.00041 8.9E-09 54.5 16.5 137 7-152 256-393 (394)
326 KOG2395 Protein involved in va 98.1 0.00011 2.3E-09 58.0 12.7 145 6-153 344-500 (644)
327 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00054 1.2E-08 43.1 14.3 101 40-149 2-110 (111)
328 COG5354 Uncharacterized protei 98.1 5.4E-05 1.2E-09 59.0 9.7 127 2-142 281-418 (561)
329 KOG3621 WD40 repeat-containing 98.0 3.7E-05 8.1E-10 62.1 8.9 109 3-111 41-155 (726)
330 KOG1912 WD40 repeat protein [G 98.0 6E-05 1.3E-09 61.8 10.0 103 9-111 439-552 (1062)
331 KOG3621 WD40 repeat-containing 98.0 8.5E-05 1.8E-09 60.1 10.3 115 38-154 34-155 (726)
332 KOG1275 PAB-dependent poly(A) 98.0 0.00013 2.8E-09 60.8 11.1 138 7-151 147-294 (1118)
333 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00029 6.3E-09 54.5 12.6 92 4-99 1-119 (353)
334 smart00320 WD40 WD40 repeats. 98.0 4E-05 8.7E-10 37.8 5.3 38 113-151 3-40 (40)
335 smart00320 WD40 WD40 repeats. 97.9 4E-05 8.6E-10 37.8 5.2 38 28-65 3-40 (40)
336 PRK11138 outer membrane biogen 97.9 0.0014 3.1E-08 51.4 16.0 145 6-157 68-227 (394)
337 KOG4640 Anaphase-promoting com 97.9 0.0001 2.2E-09 59.0 8.5 94 37-133 20-115 (665)
338 KOG2114 Vacuolar assembly/sort 97.9 0.0025 5.4E-08 53.1 16.4 149 8-158 78-248 (933)
339 COG3391 Uncharacterized conser 97.9 0.004 8.6E-08 48.8 17.3 149 2-156 80-242 (381)
340 KOG1645 RING-finger-containing 97.9 9E-05 2E-09 56.3 7.7 93 61-157 175-270 (463)
341 KOG1008 Uncharacterized conser 97.8 3.7E-06 8.1E-11 67.1 0.1 150 1-154 108-276 (783)
342 KOG1920 IkappaB kinase complex 97.8 0.0031 6.7E-08 54.5 16.4 153 2-158 75-279 (1265)
343 KOG3617 WD40 and TPR repeat-co 97.8 0.0001 2.2E-09 61.2 7.3 107 42-153 20-131 (1416)
344 PRK13616 lipoprotein LpqB; Pro 97.8 0.0014 2.9E-08 54.1 13.7 144 2-155 356-529 (591)
345 PF03178 CPSF_A: CPSF A subuni 97.7 0.011 2.3E-07 45.2 17.4 143 7-153 42-202 (321)
346 COG3386 Gluconolactonase [Carb 97.7 0.0046 1E-07 46.7 14.3 136 3-142 118-274 (307)
347 PF02897 Peptidase_S9_N: Proly 97.6 0.0081 1.7E-07 47.5 16.0 152 2-157 130-313 (414)
348 KOG1832 HIV-1 Vpr-binding prot 97.6 0.00011 2.5E-09 61.2 5.0 123 30-159 1094-1220(1516)
349 PF04841 Vps16_N: Vps16, N-ter 97.6 0.02 4.3E-07 45.3 17.3 48 18-67 62-109 (410)
350 PF00780 CNH: CNH domain; Int 97.6 0.017 3.6E-07 43.0 17.6 143 4-158 4-170 (275)
351 KOG1920 IkappaB kinase complex 97.6 0.0024 5.3E-08 55.1 12.4 110 1-112 201-324 (1265)
352 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0075 1.6E-07 38.1 12.5 93 4-105 11-109 (111)
353 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.007 1.5E-07 44.0 12.7 102 7-111 63-166 (354)
354 KOG0882 Cyclophilin-related pe 97.5 0.00078 1.7E-08 52.2 7.8 147 6-154 19-175 (558)
355 PRK13616 lipoprotein LpqB; Pro 97.4 0.0063 1.4E-07 50.3 13.3 102 38-149 350-472 (591)
356 cd00216 PQQ_DH Dehydrogenases 97.4 0.026 5.6E-07 45.8 16.5 147 8-158 111-324 (488)
357 PF04053 Coatomer_WDAD: Coatom 97.4 0.029 6.2E-07 44.8 15.8 137 7-155 117-264 (443)
358 COG3490 Uncharacterized protei 97.4 0.019 4.1E-07 42.4 13.4 154 2-158 120-315 (366)
359 cd00216 PQQ_DH Dehydrogenases 97.3 0.02 4.3E-07 46.4 14.9 149 7-158 61-269 (488)
360 PF08596 Lgl_C: Lethal giant l 97.3 0.035 7.7E-07 43.6 15.6 151 6-158 96-295 (395)
361 PF03178 CPSF_A: CPSF A subuni 97.3 0.027 5.8E-07 43.0 14.7 141 7-150 98-262 (321)
362 PF14583 Pectate_lyase22: Olig 97.3 0.024 5.1E-07 43.9 13.9 137 2-142 42-206 (386)
363 KOG1008 Uncharacterized conser 97.3 6.9E-05 1.5E-09 60.2 0.4 140 8-151 71-223 (783)
364 PF06977 SdiA-regulated: SdiA- 97.3 0.04 8.6E-07 40.4 16.9 147 2-150 71-247 (248)
365 PF12234 Rav1p_C: RAVE protein 97.3 0.024 5.2E-07 46.8 14.4 112 37-152 29-155 (631)
366 KOG2079 Vacuolar assembly/sort 97.3 0.0025 5.4E-08 54.5 9.0 102 48-152 98-202 (1206)
367 PF06977 SdiA-regulated: SdiA- 97.2 0.047 1E-06 40.1 17.8 151 1-153 27-201 (248)
368 COG3204 Uncharacterized protei 97.2 0.053 1.2E-06 40.3 14.7 154 1-155 91-265 (316)
369 KOG2079 Vacuolar assembly/sort 97.2 0.0018 4E-08 55.2 7.5 94 8-103 100-198 (1206)
370 PF15390 DUF4613: Domain of un 97.2 0.021 4.5E-07 46.3 12.9 113 38-152 57-185 (671)
371 PF06433 Me-amine-dh_H: Methyl 97.2 0.067 1.4E-06 40.8 16.4 150 2-156 42-216 (342)
372 TIGR02604 Piru_Ver_Nterm putat 97.1 0.064 1.4E-06 41.9 15.2 138 1-143 19-203 (367)
373 COG3490 Uncharacterized protei 97.1 0.053 1.1E-06 40.2 13.3 142 1-143 73-245 (366)
374 PF06433 Me-amine-dh_H: Methyl 97.1 0.046 9.9E-07 41.7 13.3 131 17-154 17-166 (342)
375 PF14870 PSII_BNR: Photosynthe 97.1 0.08 1.7E-06 40.0 15.7 143 3-150 152-301 (302)
376 KOG2444 WD40 repeat protein [G 96.9 0.0042 9.2E-08 44.1 6.5 101 7-109 70-176 (238)
377 COG5167 VID27 Protein involved 96.9 0.042 9.1E-07 43.9 12.5 145 5-154 477-633 (776)
378 PF08596 Lgl_C: Lethal giant l 96.9 0.054 1.2E-06 42.6 13.1 114 39-153 3-173 (395)
379 PF10647 Gmad1: Lipoprotein Lp 96.9 0.11 2.3E-06 38.4 15.4 138 2-143 30-185 (253)
380 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.069 1.5E-06 41.4 13.5 140 1-142 189-346 (353)
381 PF08553 VID27: VID27 cytoplas 96.9 0.015 3.3E-07 49.2 10.3 97 9-109 544-646 (794)
382 PHA02713 hypothetical protein; 96.7 0.078 1.7E-06 43.8 13.4 144 6-156 351-536 (557)
383 PF12894 Apc4_WD40: Anaphase-p 96.7 0.008 1.7E-07 31.8 5.1 29 125-153 13-41 (47)
384 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0074 1.6E-07 31.9 5.0 31 37-67 11-41 (47)
385 KOG4499 Ca2+-binding protein R 96.7 0.15 3.2E-06 36.9 13.8 93 40-133 160-263 (310)
386 PF02897 Peptidase_S9_N: Proly 96.6 0.1 2.2E-06 41.4 12.8 111 41-155 127-262 (414)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.26 5.6E-06 40.5 15.2 47 91-137 471-517 (527)
388 COG3386 Gluconolactonase [Carb 96.4 0.27 5.8E-06 37.4 14.7 146 2-154 31-194 (307)
389 PHA02713 hypothetical protein; 96.4 0.25 5.4E-06 40.9 14.5 143 6-154 303-489 (557)
390 KOG3630 Nuclear pore complex, 96.3 0.019 4.1E-07 49.8 7.4 137 3-142 108-262 (1405)
391 PHA03098 kelch-like protein; P 96.3 0.29 6.3E-06 40.2 14.0 142 6-155 342-513 (534)
392 PRK10115 protease 2; Provision 96.2 0.6 1.3E-05 39.8 15.9 105 2-109 133-254 (686)
393 PF10647 Gmad1: Lipoprotein Lp 96.0 0.39 8.5E-06 35.4 13.8 109 39-152 25-143 (253)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.22 4.7E-06 39.4 11.5 88 33-121 303-409 (415)
395 PF05694 SBP56: 56kDa selenium 96.0 0.43 9.3E-06 37.8 12.6 126 16-142 221-392 (461)
396 PF07569 Hira: TUP1-like enhan 96.0 0.11 2.5E-06 37.4 9.1 66 88-154 18-96 (219)
397 PHA03098 kelch-like protein; P 96.0 0.56 1.2E-05 38.6 14.3 143 7-155 295-466 (534)
398 PF10313 DUF2415: Uncharacteri 95.9 0.037 8.1E-07 28.5 4.7 30 125-154 2-34 (43)
399 COG3204 Uncharacterized protei 95.9 0.44 9.6E-06 35.6 11.8 119 34-153 82-210 (316)
400 PF05096 Glu_cyclase_2: Glutam 95.9 0.48 1E-05 35.0 17.5 149 3-158 52-208 (264)
401 KOG2247 WD40 repeat-containing 95.9 0.0012 2.7E-08 51.8 -1.3 132 2-139 41-175 (615)
402 KOG4441 Proteins containing BT 95.8 0.75 1.6E-05 38.3 14.2 145 6-155 332-501 (571)
403 PF14583 Pectate_lyase22: Olig 95.8 0.69 1.5E-05 36.1 13.4 122 18-144 169-303 (386)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 0.92 2E-05 37.4 16.9 150 8-158 121-338 (527)
405 PF07569 Hira: TUP1-like enhan 95.6 0.13 2.7E-06 37.1 8.2 72 3-77 18-103 (219)
406 PF14870 PSII_BNR: Photosynthe 95.5 0.78 1.7E-05 34.8 16.2 108 36-147 143-255 (302)
407 PF05694 SBP56: 56kDa selenium 95.5 0.98 2.1E-05 35.9 16.2 150 5-156 139-345 (461)
408 COG4590 ABC-type uncharacteriz 95.5 0.13 2.8E-06 40.8 8.1 153 3-160 228-393 (733)
409 KOG2395 Protein involved in va 95.3 0.21 4.6E-06 40.2 8.9 95 11-109 398-499 (644)
410 PHA02790 Kelch-like protein; P 95.1 1.4 3.1E-05 35.8 14.8 139 6-155 318-472 (480)
411 PF00780 CNH: CNH domain; Int 95.0 0.64 1.4E-05 34.5 10.7 102 47-155 5-124 (275)
412 PF10313 DUF2415: Uncharacteri 94.9 0.18 4E-06 25.9 5.1 30 39-68 2-34 (43)
413 PF12234 Rav1p_C: RAVE protein 94.8 1.2 2.5E-05 37.4 12.3 96 11-108 45-154 (631)
414 PF10168 Nup88: Nuclear pore c 94.8 2.2 4.7E-05 36.6 14.1 72 83-155 86-181 (717)
415 PF10168 Nup88: Nuclear pore c 94.8 0.37 8.1E-06 41.0 9.6 74 1-75 90-187 (717)
416 KOG3630 Nuclear pore complex, 94.6 0.52 1.1E-05 41.5 9.9 116 38-155 101-230 (1405)
417 KOG2377 Uncharacterized conser 94.5 1.9 4.1E-05 34.5 11.9 132 6-140 32-170 (657)
418 KOG1897 Damage-specific DNA bi 94.4 3 6.6E-05 36.5 13.8 135 18-156 751-901 (1096)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.61 1.3E-05 37.0 9.3 76 83-158 309-403 (415)
420 PF14727 PHTB1_N: PTHB1 N-term 94.3 2.2 4.8E-05 34.0 15.0 145 6-155 36-206 (418)
421 TIGR03074 PQQ_membr_DH membran 94.3 2.7 5.9E-05 36.3 13.6 109 7-118 194-352 (764)
422 KOG1916 Nuclear protein, conta 94.2 0.17 3.6E-06 43.4 6.1 138 17-157 153-327 (1283)
423 TIGR02276 beta_rpt_yvtn 40-res 94.2 0.35 7.7E-06 24.3 5.6 31 5-35 1-32 (42)
424 PF08728 CRT10: CRT10; InterP 93.9 3.6 7.8E-05 35.1 15.4 141 7-152 49-245 (717)
425 PRK13684 Ycf48-like protein; P 93.9 2.4 5.1E-05 32.8 15.2 143 2-152 179-330 (334)
426 PF08801 Nucleoporin_N: Nup133 93.7 2.9 6.2E-05 33.4 13.1 30 125-154 191-220 (422)
427 KOG1900 Nuclear pore complex, 93.6 3 6.4E-05 37.6 12.7 139 14-154 96-273 (1311)
428 PF05935 Arylsulfotrans: Aryls 93.6 3.4 7.4E-05 33.7 13.8 134 16-156 127-304 (477)
429 KOG4441 Proteins containing BT 93.4 4.1 8.9E-05 34.1 14.3 143 7-155 285-454 (571)
430 PF12657 TFIIIC_delta: Transcr 93.2 0.72 1.6E-05 31.9 7.3 29 39-67 87-121 (173)
431 PF15390 DUF4613: Domain of un 93.2 1.6 3.5E-05 36.0 9.8 108 1-109 62-185 (671)
432 PF10214 Rrn6: RNA polymerase 93.1 4.2 9.2E-05 35.3 13.1 115 37-154 145-277 (765)
433 PF11715 Nup160: Nucleoporin N 92.9 2 4.3E-05 35.6 10.6 72 47-118 156-256 (547)
434 PF05096 Glu_cyclase_2: Glutam 92.9 3 6.4E-05 31.0 15.8 123 29-158 35-162 (264)
435 KOG4460 Nuclear pore complex, 92.6 3.1 6.7E-05 34.0 10.5 73 84-156 106-201 (741)
436 PF07995 GSDH: Glucose / Sorbo 92.5 3.1 6.6E-05 32.1 10.5 46 1-48 7-59 (331)
437 PF12657 TFIIIC_delta: Transcr 92.5 2.4 5.2E-05 29.3 9.0 32 125-156 87-124 (173)
438 TIGR02276 beta_rpt_yvtn 40-res 92.3 0.79 1.7E-05 22.9 5.3 40 90-131 1-41 (42)
439 PF07676 PD40: WD40-like Beta 92.3 0.77 1.7E-05 22.8 5.5 26 125-150 10-38 (39)
440 PF07676 PD40: WD40-like Beta 92.2 0.74 1.6E-05 22.8 4.8 31 34-64 5-38 (39)
441 PF11715 Nup160: Nucleoporin N 92.0 1.2 2.5E-05 36.9 8.2 68 90-157 156-252 (547)
442 PF08728 CRT10: CRT10; InterP 91.9 4.6 0.0001 34.4 11.3 101 7-109 114-245 (717)
443 KOG4499 Ca2+-binding protein R 91.9 1.2 2.5E-05 32.5 6.8 46 2-47 218-263 (310)
444 TIGR03074 PQQ_membr_DH membran 91.7 8.4 0.00018 33.5 18.5 154 7-161 260-485 (764)
445 COG4257 Vgb Streptogramin lyas 91.6 4.6 0.0001 30.3 13.2 149 2-155 68-220 (353)
446 PLN00033 photosystem II stabil 91.5 6 0.00013 31.4 16.9 108 37-150 280-396 (398)
447 PF04841 Vps16_N: Vps16, N-ter 91.5 6.2 0.00013 31.5 14.9 57 81-137 216-273 (410)
448 TIGR03606 non_repeat_PQQ dehyd 91.0 7.2 0.00016 31.6 11.6 49 1-49 35-90 (454)
449 PRK13684 Ycf48-like protein; P 91.0 6.1 0.00013 30.6 14.8 108 37-148 172-283 (334)
450 PF14781 BBS2_N: Ciliary BBSom 90.9 3.3 7.1E-05 27.3 11.7 109 3-117 6-132 (136)
451 TIGR02171 Fb_sc_TIGR02171 Fibr 90.6 2.9 6.3E-05 36.4 9.0 62 16-77 328-395 (912)
452 PHA02790 Kelch-like protein; P 90.4 8.7 0.00019 31.4 14.1 103 7-114 272-388 (480)
453 PF07995 GSDH: Glucose / Sorbo 90.1 7.3 0.00016 30.1 11.5 103 39-143 3-133 (331)
454 PF14761 HPS3_N: Hermansky-Pud 90.1 5.5 0.00012 28.6 15.3 49 8-57 29-79 (215)
455 COG1520 FOG: WD40-like repeat 90.0 7.8 0.00017 30.3 15.5 146 9-158 70-222 (370)
456 KOG2377 Uncharacterized conser 89.9 2.8 6.1E-05 33.6 7.8 96 1-99 72-172 (657)
457 smart00564 PQQ beta-propeller 89.8 1.3 2.7E-05 20.9 4.2 25 9-33 8-32 (33)
458 KOG1916 Nuclear protein, conta 89.2 0.49 1.1E-05 40.7 3.6 108 6-115 194-328 (1283)
459 TIGR02604 Piru_Ver_Nterm putat 88.9 9.7 0.00021 29.8 11.8 102 38-142 14-142 (367)
460 PF01011 PQQ: PQQ enzyme repea 88.5 1.8 3.9E-05 21.4 4.1 28 94-121 2-29 (38)
461 COG5276 Uncharacterized conser 88.4 9.3 0.0002 29.0 17.3 143 7-156 96-244 (370)
462 PF01011 PQQ: PQQ enzyme repea 88.4 1.9 4.2E-05 21.3 4.3 27 9-35 2-28 (38)
463 KOG2280 Vacuolar assembly/sort 88.3 16 0.00034 31.4 13.2 47 19-67 66-112 (829)
464 PRK10115 protease 2; Provision 87.7 17 0.00037 31.2 18.7 148 1-151 177-342 (686)
465 TIGR03548 mutarot_permut cycli 87.4 11 0.00024 28.8 15.6 65 48-114 123-198 (323)
466 TIGR03118 PEPCTERM_chp_1 conse 87.2 11 0.00025 28.7 12.7 116 38-153 23-170 (336)
467 PF13449 Phytase-like: Esteras 86.9 12 0.00026 28.8 15.4 111 41-153 88-249 (326)
468 KOG2280 Vacuolar assembly/sort 86.6 20 0.00043 30.9 11.9 48 88-135 224-271 (829)
469 PF14761 HPS3_N: Hermansky-Pud 85.4 4.4 9.4E-05 29.1 6.0 48 93-142 29-78 (215)
470 PLN02193 nitrile-specifier pro 85.1 19 0.00042 29.3 16.9 145 8-156 230-413 (470)
471 PF03088 Str_synth: Strictosid 84.8 6.2 0.00013 24.0 5.8 41 100-142 35-75 (89)
472 KOG1898 Splicing factor 3b, su 84.7 18 0.0004 32.3 10.3 105 2-109 940-1047(1205)
473 PF07250 Glyoxal_oxid_N: Glyox 84.7 14 0.0003 27.3 9.8 132 20-155 49-199 (243)
474 COG3823 Glutamine cyclotransfe 84.6 13 0.00028 26.8 11.2 103 7-113 56-161 (262)
475 PF07250 Glyoxal_oxid_N: Glyox 84.6 14 0.0003 27.2 10.4 115 2-119 73-206 (243)
476 PF10395 Utp8: Utp8 family; I 84.4 25 0.00054 30.0 13.5 146 1-152 135-304 (670)
477 TIGR03547 muta_rot_YjhT mutatr 84.3 17 0.00037 28.0 14.6 41 103-144 291-331 (346)
478 PF01436 NHL: NHL repeat; Int 83.8 3 6.5E-05 19.0 3.9 25 126-150 4-28 (28)
479 KOG3616 Selective LIM binding 83.8 3.9 8.5E-05 35.0 6.0 73 83-159 16-89 (1636)
480 smart00036 CNH Domain found in 83.0 15 0.00032 28.0 8.6 64 91-158 12-78 (302)
481 PF12768 Rax2: Cortical protei 83.0 18 0.00039 27.3 12.4 93 16-110 15-123 (281)
482 PLN02153 epithiospecifier prot 82.9 20 0.00043 27.7 16.8 106 7-115 86-230 (341)
483 PF02333 Phytase: Phytase; In 82.9 22 0.00047 28.2 18.8 144 5-153 66-237 (381)
484 PF14269 Arylsulfotran_2: Aryl 82.4 8.8 0.00019 29.2 7.1 70 84-153 146-220 (299)
485 COG5167 VID27 Protein involved 82.1 6.2 0.00013 32.3 6.3 60 7-67 573-632 (776)
486 PF01731 Arylesterase: Arylest 81.9 9.1 0.0002 23.1 6.5 29 125-153 55-84 (86)
487 PF14781 BBS2_N: Ciliary BBSom 81.3 13 0.00028 24.6 11.6 106 44-154 5-126 (136)
488 PF13449 Phytase-like: Esteras 81.0 23 0.0005 27.3 12.3 104 37-142 19-165 (326)
489 KOG1983 Tomosyn and related SN 80.7 34 0.00074 30.9 10.8 26 132-157 243-268 (993)
490 COG5129 MAK16 Nuclear protein 80.6 1.2 2.7E-05 31.6 1.9 18 48-65 46-63 (303)
491 PF14269 Arylsulfotran_2: Aryl 80.0 11 0.00023 28.8 6.8 63 4-66 152-219 (299)
492 KOG3522 Predicted guanine nucl 77.9 19 0.00041 31.4 8.0 142 7-159 547-703 (925)
493 TIGR03606 non_repeat_PQQ dehyd 77.6 37 0.0008 27.7 14.1 31 37-67 29-59 (454)
494 PF14727 PHTB1_N: PTHB1 N-term 76.9 37 0.00081 27.3 12.6 58 8-66 146-203 (418)
495 PF03088 Str_synth: Strictosid 76.8 9.6 0.00021 23.2 4.7 40 16-56 36-75 (89)
496 PF13570 PQQ_3: PQQ-like domai 76.3 6.8 0.00015 19.4 3.5 21 6-26 20-40 (40)
497 PF14779 BBS1: Ciliary BBSome 75.4 27 0.00058 26.0 7.5 57 8-64 196-255 (257)
498 TIGR03118 PEPCTERM_chp_1 conse 75.4 35 0.00075 26.2 14.7 66 1-66 28-117 (336)
499 KOG1897 Damage-specific DNA bi 75.1 62 0.0014 29.0 15.6 102 6-109 839-941 (1096)
500 PRK13615 lipoprotein LpqB; Pro 75.0 49 0.0011 27.8 15.3 152 2-158 340-507 (557)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.9e-31 Score=206.07 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=147.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|+.++|++++.|+++++|.+.+...+....+|..||+.+.|+|-|.++++++.|++.++|.... ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999999999999999999999999999999999999999976 578899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..+.|+ |+|+..++++|+.|.+|++||+.+|..+..|.+|.. +|++++|+|+|++|++|+.|+.|.+||+.++..-
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999 999999999999999999999999999999999966 9999999999999999999999999999997654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=190.25 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=141.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.+++|+|||..|++|+.+|+|++||..+.+.....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999999877777889999 9
Q ss_pred CCceeEE-Eee-----CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKL-----DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-----~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |.| ...++++++.||.|+|||+..+.++..+.+|+. +|+|+.|-.+| +|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 9999999 744 678999999999999999999999999999976 89999997664 899999999999999877
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 278 G~ 279 (480)
T KOG0271|consen 278 GK 279 (480)
T ss_pred hh
Confidence 54
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-31 Score=196.43 Aligned_cols=157 Identities=23% Similarity=0.205 Sum_probs=145.0
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|. +..||+|+.||++++|++.+..++..+++|..+|..++|+|+|++|++++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468887 56899999999999999999899999999999999999999999999999999999999986 455566788
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|+|.++++|+.|..-+|||+++|+++..+.+|.. +|.+|+|+|+|..||||+.|++++|||++...+
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 999999999999999999999999999999999977 899999999999999999999999999998765
Q ss_pred CCC
Q 028802 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
-..
T Consensus 380 ly~ 382 (459)
T KOG0272|consen 380 LYT 382 (459)
T ss_pred cee
Confidence 433
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=193.95 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=147.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|+|++|++++.|.+-++||+.++..+...++|...|.+++|.|||.++++|+.|..-+|||+++ +.++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999988888899999999999999999999999999999999996 688889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ |+|+|..+++|+.|++++|||++..+++.++.+|.. -|+.|.|+| .|.+|++++.|++++||..++..+-
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999966 799999999 7789999999999999999988765
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
..
T Consensus 424 ks 425 (459)
T KOG0272|consen 424 KS 425 (459)
T ss_pred hh
Confidence 43
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-29 Score=176.54 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=141.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-C
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~ 79 (203)
++.+++|++.++++.|+++++||+.+++..+.+.+|..-|.+++|++|.+.+++|+.|.+|++|++. +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~ 146 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDS 146 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999986 345444443 0
Q ss_pred CCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+...|.|+ |+|+ ..+|++++.|++|++||+++.+....+.+|.. -++.++++|||...++|+.||.+.+||++..+
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 26789999 9997 78999999999999999999999999999966 79999999999999999999999999999887
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 226 ~lys 229 (315)
T KOG0279|consen 226 NLYS 229 (315)
T ss_pred eeEe
Confidence 6543
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=186.41 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=135.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCc-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~----- 69 (203)
++|+|||+.||+|+.||+|++||..+++. ...+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 58999999999999999999999988755 467889999999999986 4467777777777777777431
Q ss_pred --------------------------------------------------------------------------------
Q 028802 70 -------------------------------------------------------------------------------- 69 (203)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (203)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
.+++....+ |...|..+ |+|++++|++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 111222335 66778888 999999999999999999999999999
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+.+|++|-. +|+.++|+.|.+.|++|+.|.+|++|++++....++.+
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 999999966 89999999999999999999999999999987766554
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.9e-29 Score=197.74 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=146.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|-|-++|+++.|++.++|......+++.+.+|-+-|.|+.|+|+..++++|+.|.++++||+.+ +..++.|.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999998899999999999999999999999999999999999999975 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++|.++ |+|+|.+|++|+.||.|.+||+.+++.+..+.+|++ .|.++.|+.+|..||+++.|..|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 999999999999999999999999999999999955 8999999999999999999999999998765544
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=187.95 Aligned_cols=158 Identities=25% Similarity=0.390 Sum_probs=144.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++ +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45588899999999999999999999999999999999999986 788999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.++ |++++.+|++++.|+.|++||+.++. ++..+..+... +++++.|+|++.+|++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 99999999999999999999999998 56777776553 5899999999999999999999999999977
Q ss_pred ccCCC
Q 028802 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.....
T Consensus 367 ~~~~~ 371 (456)
T KOG0266|consen 367 KSVGT 371 (456)
T ss_pred cceee
Confidence 65433
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=188.27 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|+|+.+++++.++.+++|+..... ....+.+|...|..++|+|++.++++++.|+++++||+...+..++.+.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777889999999999999999999999999999999655678899999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|+++++++|+.|+.|++||++++++...+.+|.+ .|++++|++++++|++++.|+.|+|||+.++..
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 999999999999999999999999999999999976 899999999999999999999999999999883
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=171.11 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=145.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++.|-.+.+++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46788888999999999999999999999999999999999999999999999999999999999975 578888899 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..|.|+ .+|.-..|++|+.|.+++|||+++...+..+.+|.. +|.++.+.|....+++|+.|++|++||++.+...
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 9999999 899999999999999999999999999999999965 8999999998899999999999999999988643
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=179.17 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=138.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|++||||+++|+|+.||.|+|||...+-+..++..|.+.|+.+.|+..++.+++++-||+|+.||+.. ....++|+...
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999974 56777777623
Q ss_pred CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+-...|+ ..|.|.+++.|+.|. .|.+|++++|+.+-.+.+|.+ +|.+++|+|.+..|++++.|.+|++||+-..
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 3445666 689999999999876 499999999999999999955 9999999999999999999999999998655
No 12
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.1e-25 Score=177.31 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
++|+| ++++|++|+.|++|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 57999 8899999999999999999764 3466788999999999999975 6899999999999999975 46
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe----CCCc
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~ 146 (203)
.+..+.. |...|.++ |+|++.+|++++.|+.|++||+++++.+..+.+|....+..+.|.+++..|++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 89999999 9999999999999999999999999998888888653455678999888877655 4789
Q ss_pred EEEEeCCCcc
Q 028802 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=165.26 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=143.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|-|.|.+|+++++|.+|+.|++.++.++.++.+|...|..++.+.||..+++++.|.++++|-+.+ +.+...+.. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999975 566777888 8
Q ss_pred CCceeEE-EeeC---------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
..++-++ |-|. +.++.+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 6442 25899999999999999999999999999954 89999999999999999999
Q ss_pred CcEEEEeCCCcccCCCCC
Q 028802 145 SMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~ 162 (203)
+++++||+.+.++....+
T Consensus 356 ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CcEEEEEeccceeeeccC
Confidence 999999999998776544
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=6e-26 Score=159.62 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=132.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|+||...|++|+.|.+|.+|++-........... ...|.++.|+|+ ..+|++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 579999999999999999999998866444333333 789999999997 67899999999999999985 57778889
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |.+.++.+ ++|||.++++|+.+|.+.+||++.++.+..+.+. . .|.+++|+|+.-+|+.+ .+..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeec-cCCceEEEeccchh
Confidence 9 99999999 9999999999999999999999999998888665 4 79999999997666555 45569999998876
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 266 ~v~~ 269 (315)
T KOG0279|consen 266 VVEE 269 (315)
T ss_pred hhhh
Confidence 6543
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=4e-26 Score=158.43 Aligned_cols=155 Identities=22% Similarity=0.286 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
+.|..+|+.+++|+.||+++|||++...+-+.+ .+.++|+++..+|+...|++|..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 358889999999999999999999986554444 45688999999988888888888889999988642
Q ss_pred -------------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 70 -------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
-.++..+.. |.+-+..+ ++|++++|++++.|.+++||+...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 012222344 55555555 999999999999999999999988
Q ss_pred C-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
. +....+.+|.. .++..+||.||+||++++.|+..++|+++.++..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 56677888854 8999999999999999999999999999988743
No 16
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.5e-27 Score=171.56 Aligned_cols=161 Identities=18% Similarity=0.313 Sum_probs=145.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
.|||||++|++|+-||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999987655443 2567899999999999999999999999999986 6888
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.|..+|...|+|+ |+.++..+++++.|.++++.-+.+|+++..+++|+. -|..+.|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 88884499999999 999999999999999999999999999999999966 6999999999999999999999999999
Q ss_pred CCcccCCCCCcC
Q 028802 153 DDILKGSGNNIS 164 (203)
Q Consensus 153 ~~~~~~~~~~~~ 164 (203)
.+.++-..++..
T Consensus 378 KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 378 KTTECLSTFKPL 389 (508)
T ss_pred cchhhhhhccCC
Confidence 998877665543
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=5.3e-26 Score=169.74 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=130.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
|+|+.+|..||+|+.||.+++|+.. |.++.++-.|.++|.+|.|+..|.+|++++.|+++.+||..+.
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 5899999999999999999999965 5577888899999999999999999999999999999998432
Q ss_pred -----------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---------
Q 028802 70 -----------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL--------- 110 (203)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~--------- 110 (203)
..+..++.+ |.+.|.++ |+|.+.+|++++.|+++++|+..
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 233445567 88889999 99999888888888888888742
Q ss_pred ------------------------------------------CCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 111 ------------------------------------------PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 111 ------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.+.++.++..|.. +|++++|+|+|+++|+|+.||.|.
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeE
Confidence 2335555666744 999999999999999999999999
Q ss_pred EEeCCCcccC
Q 028802 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+|+++++..-
T Consensus 478 iws~~~~~l~ 487 (524)
T KOG0273|consen 478 IWSTKTGKLV 487 (524)
T ss_pred eccccchhee
Confidence 9999988654
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=9.8e-26 Score=159.58 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=142.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.++.|.+ ...|++++.|.+..+||+.+ ++...
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-ceEEE
Confidence 479999999999999999999999854 45567889999999999987 45788999999999999985 68888
Q ss_pred eeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+ |.+.|.++ ++| +++.+++|+-|...++||++.+.+.++|.+|. ..|.++.|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 899 99999999999999999999999999999995 48999999999999999999999999999
Q ss_pred CCcccCCCCC
Q 028802 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
+...+-....
T Consensus 259 RaD~~~a~ys 268 (343)
T KOG0286|consen 259 RADQELAVYS 268 (343)
T ss_pred cCCcEEeeec
Confidence 9876655443
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.3e-27 Score=172.35 Aligned_cols=152 Identities=14% Similarity=0.254 Sum_probs=136.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|.|+++|.++++|..+|.|++|+..-... ..+..| ...|++++|+|....+++++.||+|+|||... ......+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 57999999999999999999999775543 445544 48999999999999999999999999999975 355567788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|.++ |+|.-.+|++++.|..|++||.+++.++.++.+|.. .|..+.|+|++++|++++.|..+++||+++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhH
Confidence 99999999 999999999999999999999999999999999966 89999999999999999999999999999654
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=156.69 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=144.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c---cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K---DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--~---~~~~~ 75 (203)
|.|++|.++|++++.||.+.|||.-+.....-++-....|..++|+|.|+++++|+-|+...||++.+. . ...+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 469999999999999999999999988888888888899999999999999999999999999999743 1 33456
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+ |.+.+.++ |-+ ...|++++.|.+.-+||+++++.+..+.+|.+ .|.++.++| +++.+++|+.|+..++||++
T Consensus 141 l~g-HtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 141 LAG-HTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ecC-ccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeecc
Confidence 788 99999999 655 66788999999999999999999999999976 899999999 99999999999999999999
Q ss_pred CcccCCCCCcC
Q 028802 154 DILKGSGNNIS 164 (203)
Q Consensus 154 ~~~~~~~~~~~ 164 (203)
.+...+.+.-+
T Consensus 218 ~~~c~qtF~gh 228 (343)
T KOG0286|consen 218 SGQCVQTFEGH 228 (343)
T ss_pred CcceeEeeccc
Confidence 99888777644
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=6.7e-25 Score=152.37 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=132.4
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceeeecCCCCceeE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~ 86 (203)
-+|++++.|.+|++|...+|.+..+++...+.|+.+.+.|++..|++++. ..|++||+++... ++..+.+ |...|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~-h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG-HTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec-cCCceEE
Confidence 47899999999999999999999999998999999999999999998874 6799999986544 7889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ |..+|+.+++|+.||+++|||++...+...+... .+|.++..+|+...|+++..+|.|++||+.......+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 9 9999999999999999999999985555545433 4899999999999999999999999999988765543
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=151.03 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~ 76 (203)
++|+|.|++|++|+.|.++.||.-..+ +++..+++|...|-+++|+++|++|++++.|..|-+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987654 67889999999999999999999999999999999999873 23567788
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+. |...|..+ |+|...+|++++.|.+|++|.-.. -.+.+++.+|.. .|.+++|++.|..|++++.|++++||-.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 88 99999888 999999999999999999998762 357899999965 7999999999999999999999999986
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
.+..
T Consensus 225 ~~~~ 228 (312)
T KOG0645|consen 225 YTDL 228 (312)
T ss_pred ccCc
Confidence 5443
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=5.9e-26 Score=166.91 Aligned_cols=156 Identities=15% Similarity=0.266 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|.|+|+.|++|+..|.+.+|+..+-.....++.|.++|.++.|++++.++++|+.+|.|++|+.. ...++.+...|
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk~~~ahh 179 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVKIIQAHH 179 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhHHhhHhh
Confidence 5799999999999999999999975544445567899999999999999999999999999999986 35566666624
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...|+++ |+|....+++++.||+|+|||....++...+++| +..|.++.|+|....|++++.|..|++||.+++.+-.
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 4899999 9999999999999999999999988888889999 5689999999999999999999999999999997653
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1e-23 Score=147.92 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=132.2
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCC---eEEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccce
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~---~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~ 74 (203)
++|+|- |..||+++.|..|++|+...+ .+...+ .+|...|++++|+|.|++|++++.|.++.||.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 889999999999999998843 333334 47889999999999999999999999999997542 226788
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
++.+ |.+.|.++ |+++|.+|++++.|..|.+|.+..+ .+...++.|++ .|..+.|+|....|++++.|.+|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 9999999999999999999998743 57788899976 89999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 865
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=168.02 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=144.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++++|+.+++|+|+.|.+.+||+++......++.+|...|+++.|+|..+.+++++.|.+|++|.+.+ ..++++|.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 57899999999999999999999999999999999999999999999999999999999999999985 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|... |-.+++.|++++.||-|++|++.++.++.++..|.+ .|++++.+|...++++|+.||.|.+|.=.|..
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999888 989999999999999999999999999999999976 89999999999999999999999999755443
No 26
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.3e-23 Score=165.52 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=123.5
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCcccEEEEEEeeCCCE-EEEecCCCeEEEEEcCCcc
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~d~~i~v~d~~~~~ 70 (203)
++|+|+ +++|++|+.|++|+||++.++. .+..+.+|...|.+++|+|++.. |++++.|+.|++||+...
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 579996 7899999999999999997542 33467789999999999998875 468899999999999853
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE-----EEEEeCCCCeEEEEeCC
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-----SLALSHDRKFLGSISHD 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~d 144 (203)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+ .+. ...|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444444 45678899 999999999999999999999999999989988864 332 23356899999998876
Q ss_pred C----cEEEEeCCCc
Q 028802 145 S----MLKLWDLDDI 155 (203)
Q Consensus 145 ~----~i~iwd~~~~ 155 (203)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999863
No 27
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.6e-23 Score=164.07 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=127.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-------------EeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~ 68 (203)
.++++..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|+.|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4566666777777777777776544222 13567899999999999 889999999999999999964
Q ss_pred cc------ccceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.+ .++..+.+ |...|.++ |+|++ ++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 24567788 99999999 99975 6899999999999999999999888988865 8999999999999999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028802 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
++.|+.|++||++++..
T Consensus 186 gs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTI 202 (493)
T ss_pred ecCCCEEEEEECCCCcE
Confidence 99999999999998754
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=5.9e-24 Score=158.90 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC---------CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~---------~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
|.|+|.|.+|++++.|++++||+.........+..|...|..+.|+|.+ ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4699999999999999999999998888888999999999999999965 378899999999999997 478
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
++..|.. |..+|+++ |+|+|.++++|+.||.|.+|++++++..+.+.+. + .|..++|+.+|.+|..+..|+.+++.
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999999 99999999 9999999999999999999999999999998876 4 59999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=152.45 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=138.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++|+.|...++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||+..+........ . .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-Q-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-c-c
Confidence 3578988999999999999999999999999999999999999999999999999999999999998654444333 2 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+-=+ |+|.+..+++|+.||.|.+|.+.++...+.+.+|.. ++++-.|.|+|+.++++..||+|++|++.++.+..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3444445 899999999999999999999999888889999954 89999999999999999999999999999997765
Q ss_pred CC
Q 028802 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 227 ~~ 228 (399)
T KOG0296|consen 227 KI 228 (399)
T ss_pred Ee
Confidence 43
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=172.23 Aligned_cols=157 Identities=14% Similarity=0.277 Sum_probs=148.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|....++++-..|.|++||.+-+.++..+..|.++|..++|+|...++++|+.|-.|+||+... ..++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 58999999999999999999999999999999999999999999999999999999999999999974 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..|+.+ |++..++|++++.|.+|+||+..+++++..+++|.. -|.|..|+|....+++++.|.+|+|||+.....+.
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 899999999999999999999999999999999966 69999999999999999999999999998877664
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 172 ~ 172 (1202)
T KOG0292|consen 172 K 172 (1202)
T ss_pred C
Confidence 4
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=8.9e-25 Score=163.60 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=139.9
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+.+|..+++++.|+.+++||+.+ +.+...+..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~~ 298 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFHL 298 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEec
Confidence 35777 788899999999999999976 789999999999999999999999999999999999999986 678888874
Q ss_pred CCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...++|+ |+|++ +.+++|..++.|+.||+++++.++.+..|.+ +|..+.|-++|+++++.+.|++++||+.+..-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 6678888 99998 8899999999999999999999999988865 89999999999999999999999999988775
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
+.
T Consensus 376 ~i 377 (503)
T KOG0282|consen 376 PI 377 (503)
T ss_pred cc
Confidence 43
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=170.09 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--------------------------------~--------------------- 27 (203)
|.||+||++||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998754 0
Q ss_pred -------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEE
Q 028802 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (203)
Q Consensus 28 -------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (203)
++++.+.+|.+-|..|.|+.+ ++|++++.|.+|++|++. ...++..|. |..-|+|+ |+| |.+++++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 012244568888999999964 689999999999999997 467888777 89999999 999 78999999
Q ss_pred cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 99 ~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+.||.|+||++...+...-...+ + -|++++|.|||++.+.|+.+|.+++|++........
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999999876665444444 4 699999999999999999999999999988765543
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.4e-24 Score=163.71 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=142.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+|...++++++.|-+|++||.+.+ .+.+++++|..-|.+++|+| |.+.+++++-|++|+||.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999864 78899999999999999999 778999999999999999974 567788999
Q ss_pred CCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~--~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.|+ +- ++-+++++|+.|..|+|||.++..+++++.+|+. .|..+.|+|.=..+++|+.||+++||...|.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 64 4568999999999999999999999999999976 8999999999999999999999999998887
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
.+..
T Consensus 260 ~lE~ 263 (794)
T KOG0276|consen 260 KLEK 263 (794)
T ss_pred ehhh
Confidence 7653
No 34
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.9e-22 Score=160.33 Aligned_cols=143 Identities=8% Similarity=0.054 Sum_probs=121.5
Q ss_pred EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc-------cceeeecCCCCce
Q 028802 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (203)
Q Consensus 13 ~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~v 84 (203)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 445788999998777778889999999999999996 78999999999999999974322 2345677 88999
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++ |+|++..+ ++++.|+.|++||+++++.+..+..+ . .|.+++|+|+|.+|++++.|+.|+|||++++...
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999 99998765 68899999999999998877766533 4 7999999999999999999999999999987654
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=5.7e-23 Score=146.06 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=132.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|+|.+||+|+.|..|.+|+... -+-...+++|.+.|..+.|.+|++.|++++.|.+++.||..+ ++....+..
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 36999999999999999999999654 355678889999999999999999999999999999999986 677888888
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..-+..+ -+. ...++.+++.|+++++||+++..+++++.... .++++.|..++..+.+|+-|+.|++||++....
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccceeeccccCceeeeccccCcc
Confidence 88888877 233 33456678889999999999999998887653 699999999999999999999999999976543
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=5.6e-23 Score=146.09 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=138.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|.+|+..|++++.|.+|+.||+++|+.+..+++|..-++++.-+.-| .++.+++.|+++++||++. +..++++.
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~-- 172 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE-- 172 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc--
Confidence 4688999999999999999999999999999999999999988854444 4566788899999999985 56666665
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....++++ |..++..+.+|+.|+.|++||++.+..+.++.+|.+ .|+.+..+|+|.++.+-+.|.++++||++..-+.
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 36778888 999999999999999999999999999999999977 8999999999999999999999999999987665
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 252 ~R 253 (338)
T KOG0265|consen 252 QR 253 (338)
T ss_pred Cc
Confidence 54
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4.9e-22 Score=146.36 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=137.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|++++|++++.++.+++|++.. ......+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887788888888999999999999999999999999999974 356667777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+.++ |+|++.++++++.++.|.+|++.+++....+..|.. .+.++.|+|++.++++++.++.|++||+++....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 8889999 899988888888899999999998888888887754 7999999999889888888999999999866543
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=163.82 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=142.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++||||++||++--|++++||-+.+-+....+.+|.-||.|+.++||+..+++|+.|.+|++|-+. .+.+.+.+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999999888999999999999999999999999999999999997 4788899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |-|....+.+++.|+.|+-||-.....++.+.+|.. .|++++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999998999999999965 899999999999999999999999998654
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.5e-23 Score=142.92 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=130.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++ .++.+++++.|++|++|+.. .+..+.++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 5788875 5778889999999999753 367888999999999999998 55678888999999999986 467788999
Q ss_pred cCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |...|... |+| .++++++++.|+.+++||++.......+..|. ..|.++.|+. +.+.|+|++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999988 888 57899999999999999998644344488885 4799999987 557789999999999999998
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 223 ~r~p 226 (311)
T KOG0277|consen 223 LRTP 226 (311)
T ss_pred cccc
Confidence 7643
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=2.9e-22 Score=151.80 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=136.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.|||||.++++++.||++.+||-.+++.+..+. +|.+.|..|+|+||+..+++++.|.++++||+.. ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4699999999999999999999999999999887 8999999999999999999999999999999975 46666654
Q ss_pred c---CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 G---LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~---~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. .....+.|+|. ...|++.+.+|.|.+++.....++.++.+|.. .|+++..+|++.+|++++.||.|.-|+..+
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 3 01234566664 66889999999999999999899999999976 899999999999999999999999999988
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+.
T Consensus 352 g~~~ 355 (603)
T KOG0318|consen 352 GTSD 355 (603)
T ss_pred cccc
Confidence 8765
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=140.42 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=132.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+-+|++.++++.|.+|++|+...+.++.+..+|...|..++.+.|+..|++++.|..+.+||+.+ ++..+.+.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-cc
Confidence 5788999999999999999999999999999999999999999999999999999999999999985 688999999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCC-----------------------------------
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSE----------------------------------- 123 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~~----------------------------------- 123 (203)
+.|..+ |+.+...+++|+.|..+++||.++. ++++++....+
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 999999 9999999999999999999998764 45554432211
Q ss_pred --cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 --~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+|+++.|+++++.++.++.|++|++.|-.+++.-+.
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 2567777777777777777777777777666666543
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=3.9e-23 Score=150.21 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=142.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++|+-..+|++++.|+.|+-||+..++.++.+-+|-+.|.+++.+|.-..|++++.|.+++|||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 57889999999999999999999999999999999999999999999999999999999999999996 578889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .+.+++.+|....+|+++.| .|+-|++..+.-.
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchh
Confidence 9999999 888889999999999999999999999999998865 89999999999999999876 6899999776543
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=7.1e-22 Score=145.47 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=137.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|++++|++++.++.|++|++.+++.+..+..|...+.++.|++++.++++++.++.+.+|++.. ......+.. +
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998878888888888999999999988888888899999999974 456666777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|++||+++++.+..+..|.. .+.++.|+|+++.+++++.++.|++||+++.....
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 999999999888899999999998888888887754 79999999999999999999999999998765443
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-22 Score=155.98 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=141.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
|-+--+.+++|+.|..|+||+..+++.+..+..|..-|++++.+|.-.++++++.|-.|++||....-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 3445578999999999999999999999999999999999999999999999999999999999987788899999 999
Q ss_pred ceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++ |+| |.+.+++++.|++|+||.+.+..+..++.+|.. .|.++.+-+ |..+|++|+.|.+|+|||..+..+-
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999966 899999987 4479999999999999999887654
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.3e-22 Score=145.21 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=129.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC------------------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v 63 (203)
+|||||.++++|+.|..|+|.|++. ...++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1356777889999999999999999999999999999
Q ss_pred EEcCCcc--ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCCCe
Q 028802 64 YSWGYFK--DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 64 ~d~~~~~--~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 137 (203)
||+.... +..+.|. ...++.++ |+|.|.+++.|.....+++||+.+.++...- ..|++ .|+++.+++.++.
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 9996421 2223344 46789999 9999999999999999999999998876443 34544 8999999999999
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 028802 138 LGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (203)
.++++.||.|++||--+..+
T Consensus 276 YvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred EEEeccCCcEEeeccccHHH
Confidence 99999999999999665544
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=1.1e-21 Score=164.46 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+| ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||+.. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 467899999999999999999999999999999999999997 789999999999999999975 455666664
Q ss_pred CCCceeEE-E-eeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+ ..+.++ | .+++.+|++|+.||.|++||++..+ .+..+.+|.. .|.++.|. ++.+|++++.|+.|++||++..
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 3 567777 7 4679999999999999999998765 5667788855 89999997 6789999999999999999754
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.7e-23 Score=149.35 Aligned_cols=155 Identities=15% Similarity=0.264 Sum_probs=145.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-|+|+-..+++++.|++|++||..++++...+++|...+..++|+..|.+|++++.|-.+++||+.....+++.+.+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 46888889999999999999999999999999999999999999999999999999999999999865677888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|.++ |-|.|.+|++++.|.+|+.|++.++.++.++.+|.+ .|..+..+.||..+++++.|.+|++|-+.+.++.
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence 999999 899999999999999999999999999999999977 8999999999999999999999999999998554
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.2e-23 Score=151.53 Aligned_cols=153 Identities=15% Similarity=0.295 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~---------- 69 (203)
+.||||.++|++++.+..+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998876664 34578899999999999999999999999988521
Q ss_pred -----------cc-------------------------------------------------------------cceeee
Q 028802 70 -----------KD-------------------------------------------------------------CSDRFV 77 (203)
Q Consensus 70 -----------~~-------------------------------------------------------------~~~~~~ 77 (203)
++ .+..+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 00 000001
Q ss_pred cCCCCc---eeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ |... |.++| -.+..++++|++|+.|++|+..+++++..+.+|.. .|.+++|+|.. ..+|+++.||+|+||-.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 1 2111 22223 22446899999999999999999999999999976 89999999965 57899999999999987
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 644
No 49
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.1e-23 Score=162.33 Aligned_cols=153 Identities=21% Similarity=0.346 Sum_probs=131.3
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCC---CeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.|+. ..++||+++..|.|.+||+.. .+.+..+..|...++++.|++ ..++|++|+.||.|++||++. .....++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccc
Confidence 3443 357899999999999999986 456667888999999999998 457889999999999999985 4566677
Q ss_pred ecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ ....|+.+ |+| .+.+++++...|.|++||++. .++...+.+|.+ +|.++.|+|++.+||+|+.|+.|+||++.
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEecc
Confidence 77 78889999 887 578899999999999999984 567788999966 99999999999999999999999999998
Q ss_pred Cccc
Q 028802 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 251 ~~~~ 254 (839)
T KOG0269|consen 251 DSRA 254 (839)
T ss_pred CCCc
Confidence 6543
No 50
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.1e-23 Score=161.38 Aligned_cols=155 Identities=18% Similarity=0.307 Sum_probs=132.4
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|++- ..+|++|+.||+|++||++...-..++.+....|..++|+| .+.+++++...|.+.+||++....+...+..
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A- 218 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA- 218 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-
Confidence 46654 46789999999999999998887788888888999999999 5688999999999999999988788888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEEe--CCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~ 155 (203)
|.++|.|+ |+|++.+|++|+.|+.|+||+..+.+.-....-++..++..+.|-|..++ |++++ .|-.|+|||++..
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999 99999999999999999999998765544444455568999999998765 66665 6888999999876
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 299 YI 300 (839)
T KOG0269|consen 299 YI 300 (839)
T ss_pred cc
Confidence 53
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=158.67 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=134.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCe-----EEE----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 8 MKLLGTSGDGTLSVCNLRKNT-----VQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~-----~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.++++++.|.++++|++...+ ... ....|...|++++++|+..++++|+.|.+.++|++. .......+.+
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeC
Confidence 478999999999999997621 111 224688999999999999999999999999999998 4678889999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|..+.+++++.|.+|++|.+.+..+++++.+|.. .|.-+.|-.+|..|++++.||.|++|++.+..+
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999 999999999999999999999999999999999965 899999999999999999999999999999887
Q ss_pred CCC
Q 028802 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
...
T Consensus 582 ~~t 584 (775)
T KOG0319|consen 582 EMT 584 (775)
T ss_pred hhh
Confidence 643
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.7e-22 Score=137.41 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=95.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~ 80 (203)
+.+.|...+++|+.|..+.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456777899999999999999999999999999999999999999999999999999999999975 2356777766 5
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
...|.++ .-.+..|+.|+.||+++.||++.|...
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceee
Confidence 6667666 335678999999999999999876543
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=3.5e-23 Score=150.20 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=113.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-------------------------------------
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------------------------------- 48 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~------------------------------------- 48 (203)
+.+.|++|+.|.+|+|||.++++++.++-+|...|..+.|+..
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 5567889999999999999998887777777666666665421
Q ss_pred ----CCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc
Q 028802 49 ----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY 124 (203)
Q Consensus 49 ----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~ 124 (203)
.+++++++.|.+|++|++.+ ...+.++.+ |...|.|+ -..++++++|+.|.+|++||+..|.++..+.+|.+
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred eccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 23566666666666666653 566667777 77777776 23578899999999999999999999999999965
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++.| |...+++|+.||+|+|||+.+....
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 7888888 5678999999999999999877543
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.7e-21 Score=163.38 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=130.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe-eCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+|+| ++.+|++|+.|++|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998888777654 678999996 47899999999999999999864445667778
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|...|.++ |. ++.+|++++.|+.|++||++. ..++..+.+|.. .+..++|+|++.+|++|+.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99999999 75 788999999999999999974 256778888855 789999999999999999999999999
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
.....
T Consensus 737 ~~~~~ 741 (793)
T PLN00181 737 KAFPM 741 (793)
T ss_pred CCCCC
Confidence 86553
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=7.9e-22 Score=137.42 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=128.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|....+.+++++.|++||+||.+++..++++.. ..+|.++.++++|++|.++. .+.|.+||..+. ..++.+.- +
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccC--c
Confidence 3556677888889999999999999999998876 57799999999998877654 578999998753 45555543 5
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.+. .+|+...+++|++|..++.||..++..+..+ .+|.+ +|.|+.|+|+|...++|+.||+|++|.+.......
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 566666 7999999999999999999999999999886 77765 99999999999999999999999999987665543
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=9.3e-22 Score=149.08 Aligned_cols=155 Identities=14% Similarity=0.246 Sum_probs=122.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCC----CeEEEEEcCCc------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~v~d~~~~------ 69 (203)
.|||.|-++|+|...|+|+|||..... +..+++.-.++|..|+|+++++.|+..++. |.+.+||..+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999987532 234555556788889998888877665542 34556665321
Q ss_pred ----------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
-+....+.. |..-|.++ |+|+|.++++++.||.|.+||-.+|+.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 011111223 56678999 999999999999999999999999999
Q ss_pred eeeec---cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 115 ~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..+. +|.+ .|++++|+||+..+++++.|.+++|||+.+....
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 98887 7855 8999999999999999999999999999887544
No 57
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.4e-22 Score=146.60 Aligned_cols=156 Identities=13% Similarity=0.252 Sum_probs=130.0
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|-. ..+++++.|+.+.|||++ +.++.....+|...|+|++|+| ++..|++|+.|++|.+||+++...++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 4677754 467889999999999999 4566677789999999999999 55678899999999999999888899999
Q ss_pred ecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-C-------------ceeeeeccCCCcceEEEEEeCCCCe-EE
Q 028802 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-N-------------RIIQPIAEHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~-------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~ 139 (203)
.+ |...|.++ |+|. ...+++++.|+.+.|||+.. + +.+++..+|+. .|..+.|+|+..+ |+
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9996 46777888999999999853 1 23466678855 8999999998876 56
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028802 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
+.+.|+.+.||.+....-.
T Consensus 391 SvaeDN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAENIYN 409 (422)
T ss_pred EecCCceEEEeeccccccC
Confidence 7889999999998754433
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.9e-22 Score=146.73 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=129.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCC-cc
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~-~~ 70 (203)
|+|++... .|++++.|++|.+||+... .+...+.+|...|..++|++ +...|.+++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 56887654 7899999999999999743 23456788999999999999 456788999999999999995 23
Q ss_pred ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCc
Q 028802 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 146 (203)
++.....+ |.+.+.|+ |+| ++..|++|+.|++|.+||++. .+++.++.+|.. .|..+.|+|.. ..||+++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 45556677 99999999 988 567788999999999999986 357788999966 89999999965 67889999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
+.|||+..-...
T Consensus 341 l~vWDls~ig~e 352 (422)
T KOG0264|consen 341 LNVWDLSRIGEE 352 (422)
T ss_pred EEEEeccccccc
Confidence 999999765443
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.9e-22 Score=138.56 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=129.8
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|++- ...+++++.|++|++|+...++.++++.+|...|...+|+| ..+.+++++.|+.+++||++..++.+. +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 45553 45678889999999999999999999999999999999999 568999999999999999997766655 777
Q ss_pred CCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...+.++ |+ .+.+.+++|+.|+.|+.||++.- .++..+.+| +.+|..+.|+|-. ..|++++.|=+++|||....
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 88889988 85 46788999999999999999864 578888999 5599999999965 57899999999999998644
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=145.12 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=132.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~ 76 (203)
|.|+|....|++|+.|++|+++|+......+ .......+|.+|.|+|.|.+|++|.....+++||+.+.+..+. .-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 5799999999999999999999998653322 2223467899999999999999999999999999986422221 12
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |.+.|.++ +++.+++.++++.||.|++||--+++++.++ ..|.+..|.+..|..+|+||++.+.|..+++|.+.+
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 34 77889999 9999999999999999999998888998777 466566899999999999999999999999999988
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..-
T Consensus 337 ~R~l 340 (430)
T KOG0640|consen 337 GRML 340 (430)
T ss_pred CceE
Confidence 8653
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=146.61 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=135.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~ 80 (203)
.|+|+...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.|+...+.|++. +.++..... -.
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999987777778889999999999999999999999999999999985 444444332 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.-.+++. |+|||..+.+|..|+.|++||+.++.....|.+|+. +|..++|+.+|-||++++.|+.|++||+|....-
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 2346777 999999999999999999999999999999999966 9999999999999999999999999999987643
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.1e-22 Score=153.58 Aligned_cols=155 Identities=15% Similarity=0.239 Sum_probs=138.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 47999999999999999999999998888888888 99999999998 678899999999999999976555556788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC-CCeEEEEe--CCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-RKFLGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~d~~i~iwd~~~~ 155 (203)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. +|.+++|+|- ...||+|+ .|++|++|++.++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888889999955 8999999994 46788876 7999999999988
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
...+
T Consensus 379 ~~i~ 382 (484)
T KOG0305|consen 379 ARID 382 (484)
T ss_pred cEec
Confidence 6553
No 63
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.7e-23 Score=163.56 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=145.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+++.++.|+.+++||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888888999999999999999999999999999999999999999999999999999999999984 567888898 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|+|++++.++.|..+++||+..|+.+..|..|.. .+.++.|+|..-.+++|+.|+++++||+++.+...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 9999999 999999999999999999999999999999999965 89999999999899999999999999999876554
Q ss_pred CC
Q 028802 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 233 s~ 234 (825)
T KOG0267|consen 233 SG 234 (825)
T ss_pred cc
Confidence 43
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-21 Score=135.94 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 76 (203)
|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+++....+..++++|+.|.++++||+.+. +++..+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 457889999999999999999999899999999999999999999999999999999999999999864 222221
Q ss_pred -------------------------------------------------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 77 -------------------------------------------------VGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 77 -------------------------------------------------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
.. +...+... |.|.+.+|++|..+|.|..
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 11 23345555 8999999999999999999
Q ss_pred EEccCCce-eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
||+++|+. +.....|.. .|+.+.++++..++++++.|.+-++||.++.+....
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999854 455577754 899999999999999999999999999999875533
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=8.2e-22 Score=149.22 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=124.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE------------eecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~------------~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~ 67 (203)
++||+.|..|++.+....++|+|-..-.... ..++|...+++.+|+|.. ..+++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 5799999999888888899999965433332 225788899999999965 678999999999999998
Q ss_pred CccccceeeecC----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCC-cceEEEEEeCCCCeE
Q 028802 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l 138 (203)
+....++.+... ..-+++.+ |+|+|++|+.|+.||.|++|+..... ....-.+|.. ..|++|+|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 776666666530 12245556 99999999999999999999975432 2223345532 279999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028802 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++-+.|+++++||++...+.
T Consensus 380 lSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhccCCCceeeeeccccccc
Confidence 99999999999999987543
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=144.64 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=132.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.||++|++||+++.|.+..+|.+-.. ++..++.+|..+|..+.|+||.++|++++.+..+.+||+.+ +.....+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 479999999999999999999997643 45778889999999999999999999999999999999986 45555554
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+...+.++ |.|||..+++|+.|+.+..||+. |..+..+.+-....|.+++.++||.++++.+.|..|++|+..+..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3124556666 99999999999999999999986 566666666544479999999999999999999999999988776
Q ss_pred cCC
Q 028802 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
.+.
T Consensus 388 dr~ 390 (519)
T KOG0293|consen 388 DRG 390 (519)
T ss_pred hhc
Confidence 653
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=139.55 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=129.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 76 (203)
|.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+. .++..+
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e 232 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHKITQAE 232 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEEecccc
Confidence 579999999999999999999999998788899999999999999999999999999999999998642 111111
Q ss_pred --------------------------------------------------------------------------------
Q 028802 77 -------------------------------------------------------------------------------- 76 (203)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (203)
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence
Q ss_pred -----------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 77 -----------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 77 -----------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.. |...|..+ |-+ ..+|++++.+|.|+.||.++|+++.++.+|.. .|.+++++|+++++++++.|
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCC
Confidence 01 44456666 655 67899999999999999999999999999955 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028802 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
++.+||+..
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 999999874
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=151.83 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=133.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
|..-+.+|++|+.|.++++||+.++.+...+.+|...+.++... ..++++|+.|.+|++|++.+ +..+..+.+ |..
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~ 332 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTG 332 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-ccc
Confidence 33347789999999999999999999999999999999888764 45778889999999999984 688899999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc-ccCCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~ 160 (203)
+|.++ .+ +.++++|+.|+.|.+|++.+++++..+.+|.. +|+++.+.+. ..+++|+.|++|++||+++. .+.+.
T Consensus 333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 99999 55 88999999999999999999999999999976 8999987665 89999999999999999999 54433
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=2.2e-21 Score=141.85 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=126.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC-------------------------CeEEEeecCCcccEEEEEEeeCCCEEEEec
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~-------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 56 (203)
+..++|.++++|+.|.+|.+|+... ..++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568899999999999999999321 124457789999999999987 77899999
Q ss_pred CCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCcceEEEEEe
Q 028802 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 57 ~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~~~~~~i~~~~~~ 132 (203)
.|.+|++||+.+ +.....+.+ ...+.++ ++|..++|++|+.|..|++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDlet-g~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLET-GGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeec-ccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 999999999986 455556664 6678888 89999999999999999999998753 4578889966 89999999
Q ss_pred CCCC-eEEEEeCCCcEEEEeCCCcc
Q 028802 133 HDRK-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
|... .|++++.|+++++||+++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 9765 57899999999999999876
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.4e-21 Score=142.85 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=128.8
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|+|+++ .+++|+.|+.+++||+.+......+.+|...|.+.+|+|. +..+++|+.||.|++||++.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788665 5678888999999999998876688999999999999995 45889999999999999987544444554
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..+|..+ +-|.|..|++++.. .|+|||+-+|..+ ..+..|.. .|+|+.+..+++.|++++.|+.+++||+.+.+-
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 78999999 88999999988764 6999999866554 44444755 899999999999999999999999999877765
Q ss_pred CCCC
Q 028802 158 GSGN 161 (203)
Q Consensus 158 ~~~~ 161 (203)
.+..
T Consensus 273 v~s~ 276 (487)
T KOG0310|consen 273 VHSW 276 (487)
T ss_pred EEee
Confidence 5443
No 71
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=142.73 Aligned_cols=152 Identities=12% Similarity=0.180 Sum_probs=123.8
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc-ce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~-~~ 74 (203)
|.|||-. ..|++|.--+.|++|...++.- ...+.+|...|-.|+|+|.. ..|++|+.||+|+|||++..... ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 5788832 3577877778999999887642 23556799999999999954 67889999999999999864222 22
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i 149 (203)
..+. |...|..+ |+....+|++|+.+|.++|||++. ++++.++..|.. +|+++.|+|.. ..|++++.|..|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 2355 99999999 988888999999999999999985 578889999965 99999999954 67888889999999
Q ss_pred EeCCC
Q 028802 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
||+..
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99964
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-20 Score=134.30 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=127.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccceeeec-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~- 78 (203)
|+.+|-+..+++++.|++|++||++..++...+.....+| ++|.|.|-+++++.....|++||++.. +.+...+.-
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 4578988999999999999999999777666555444444 789999999999998889999999864 344455443
Q ss_pred -CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc--eEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP--IESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
........+ |+|+|++|+.++..+.+++.|.-+|..+.++..+.... .-+.+|+||++++++|+.||+|.+|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 024557778 99999999999999999999999999988888775421 24678999999999999999999999988
Q ss_pred cccCC
Q 028802 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
+.+-.
T Consensus 264 g~~v~ 268 (311)
T KOG1446|consen 264 GKKVA 268 (311)
T ss_pred CcEee
Confidence 87553
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=6.1e-21 Score=133.58 Aligned_cols=156 Identities=18% Similarity=0.290 Sum_probs=128.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----------
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~---------- 69 (203)
++|+|. ...+++++.|.+|++||++.+++...+....+ -..+.|+|+|.++++++.|..|...|.++.
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 356664 56889999999999999999998887765433 446789999999999999988888877532
Q ss_pred ------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 70 ------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 70 ------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
-+++..++. |+....|+ |+|+|+++++|+.|-.+.+||+..--++..+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 122333455 77788888 9999999999999999999999988888888
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+ +.+|..+.|+.+|++||+++.|..|-|=++.++..-.
T Consensus 228 sRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 228 SRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 877 6699999999999999999999999888888876543
No 74
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=9.7e-21 Score=148.94 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=140.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+.-|..||.|+. -|.+-||+.++...+...++|...+.+++++|||+++++|+.||.|+|||.. .+-+..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 467788999998865 4899999999999999999999999999999999999999999999999997 4678999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
|...++.+ |+..|+.+++++.||+|+.||+..++...+++.+......+++..|.|..++.|+.|. .|++|++.+++.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999 9999999999999999999999999999999887655677888899999998888764 699999999875
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
-
T Consensus 471 l 471 (893)
T KOG0291|consen 471 L 471 (893)
T ss_pred e
Confidence 4
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=6.9e-22 Score=148.27 Aligned_cols=148 Identities=15% Similarity=0.301 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-----
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----- 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----- 74 (203)
+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++++.++++++|+.+..- .++
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~ 383 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADP 383 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcch
Confidence 4688988 788999999999999999999999999999999999999999999999999999999986421 100
Q ss_pred -----------------------------------------eeecCCCCc--eeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 75 -----------------------------------------RFVGLSPNS--VDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 75 -----------------------------------------~~~~~~~~~--v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.+.+ |..+ -..+ |+|+|.+|++|+.+|.+.+||.+
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 1122 2222 2334 89999999999999999999999
Q ss_pred CCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028802 111 PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
+.+.+..+..|.+ ++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 463 t~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999955 89999999965 6789999999999996
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=2.8e-21 Score=135.23 Aligned_cols=155 Identities=17% Similarity=0.320 Sum_probs=128.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|+.+|..|++|+.|+++.+|++.....+. ...+|.+.|-.++|+| +...|++++.|.+|++||++. +++...+.
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~ 104 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIE 104 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEee
Confidence 5799999999999999999999998775443 3457888899999987 567899999999999999985 56777776
Q ss_pred cCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCc-----------------------------------------eee
Q 028802 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR-----------------------------------------IIQ 116 (203)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~-----------------------------------------~~~ 116 (203)
. ..+.+...|+|+|.++++++.|..|.+.|.++.+ ++.
T Consensus 105 ~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 105 T-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred c-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 6 6777777799999999999998888888775422 334
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.+|+. .+.||.|+|+|+++|+|+.|..+.+||+....+.
T Consensus 184 si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 184 SIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred ccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 4556754 7889999999999999999999999999877654
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5e-21 Score=147.62 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=132.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEec--CCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|.|+++++++|+|+.|+.+.|||.....+...+..|...|..++|+| ....|++|+ .|+.|++|++.+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888889999999999999999 557788765 499999999975 56666665
Q ss_pred cCCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. ...|..+ |++..+.|+++. .+..|.||...+.+.+..+.+|.. +|..++++|||..+++++.|.+|++|++-.
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4 6788888 999988777654 467899999999999999999966 899999999999999999999999999976
Q ss_pred c
Q 028802 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
No 78
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.2e-21 Score=142.26 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=128.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--------ccccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--------~~~~~ 73 (203)
+-+|+|.+|+.|+..|.|++|.+.+|.++..+..|...|+++.|+-|+.+|++|+.||.|.+|++.. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998732 23556
Q ss_pred eeeecCCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCceeee---------------------------------
Q 028802 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQP--------------------------------- 117 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~dg~v~v~d~~~~~~~~~--------------------------------- 117 (203)
..+.. |.-+|+.+ . .+...++++++.|.++++||+..+..+.+
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67778 88889888 4 33557899999999999999865543322
Q ss_pred ------------------------eccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 118 ------------------------IAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ------------------------~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|.+ .+|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 223432 389999999999999999999999999976654
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=3.4e-21 Score=156.30 Aligned_cols=152 Identities=15% Similarity=0.249 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCC------------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~v~d~~~------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
+..+|+|..+++|+ .|+.++||+... .+.+..+..|.+.|.|+.|+|||++|++|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35789999999999 899999999752 2345566789999999999999999999999999999988
Q ss_pred CC------cc-----------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE
Q 028802 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
.. .+ +.+..+.+ |.+.|..+ |+|++.++++++.|++|.+|+..+.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 11 24556788 99999999 999999999999999999999999999999999965 8999
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 129 LALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.|.|-|+|||+-+.|++|+||.+..
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEccc
Confidence 99999999999999999999999765
No 80
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.5e-21 Score=152.01 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=136.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------c---
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-------~--- 70 (203)
+.|++.-..|++++.|.+|+||+.++.+++..+++|.-.|.|..|+|....+++++-|.+|+|||+... +
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence 357888889999999999999999999999999999999999999999999999999999999999521 0
Q ss_pred ------------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEE
Q 028802 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESL 129 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~ 129 (203)
.....+.+ |...|.-+ |+|.-.+|++|+.|+.|++|.....+ .+-++++|.. .|+++
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssv 256 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSV 256 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceE
Confidence 01123456 77777767 99999999999999999999987544 4567889965 89999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028802 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+|....+++.+.|+.|+|||+.....-+.+
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeee
Confidence 99999999999999999999999877655544
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=134.46 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=124.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|||. ..++++++.|++||+|+++. |... .....|.++|.+++|+.+|..+++|+.|+.+++||+... +...+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--Ceeeee
Confidence 589994 55667899999999999986 3333 334568899999999999999999999999999999853 556677
Q ss_pred cCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. |..+|.++ |-+. ...|++|+.|.+|+.||++...++.++... + +++++.. -...++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 7 99999999 7443 458999999999999999999999888877 4 6776554 445788888999999999987
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..+
T Consensus 186 ~~te 189 (347)
T KOG0647|consen 186 PPTE 189 (347)
T ss_pred Ccch
Confidence 7544
No 82
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=2e-21 Score=141.20 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=126.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.+++++++.|.+|++|++.++..+.++.+|...|.|+.+ .++++++|+.|.+|++||+. .+.++..+.+ |..-|.
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~cLRvLeG-HEeLvR 404 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG-HEELVR 404 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc-ccHHHHHHhc-hHHhhh
Confidence 5679999999999999999999999999999999999887 57899999999999999997 5799999999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 86 AL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+ | +.+.|++|..||+|++||+..+. ++.++..|++ .|..+.| |...+++++.|.+|.|||+..+
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg-RVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG-RVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc-eeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99 7 56789999999999999997652 3455566755 7888888 6678999999999999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
.+.
T Consensus 480 ~~~ 482 (499)
T KOG0281|consen 480 PPS 482 (499)
T ss_pred Ccc
Confidence 665
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=134.74 Aligned_cols=106 Identities=11% Similarity=0.201 Sum_probs=94.8
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
-++.++|+|+.|.+|+|||++....+..+..|.+.|+++.|.+... .|++|+.||.|.+|++... .++..+.+ |.+
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~ 128 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKG 128 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-ccc
Confidence 3688999999999999999999888888889999999999998765 8999999999999999754 78888999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
.|+.+ .+|.+++.++.+.|+.+++||+-.|
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 99999 8999999999999999999987543
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.1e-21 Score=148.28 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=133.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEE-eeCCCEEEEecCCCeEEEEEcCCccc-cce----
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~-~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~---- 74 (203)
...+++.|++++.|-+|++|+...+ -+..++..|...|.|+++ .++...+++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3457889999999999999999876 466788899999999999 77888999999999999999975321 111
Q ss_pred ----eee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.+. + +...++++ .++.|..|++|+..+.|++||.++++.+..+++|++ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 5 66778888 789999999999999999999999999999999987 899999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028802 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+||+....+...
T Consensus 239 lWdLgqQrCl~T 250 (735)
T KOG0308|consen 239 LWDLGQQRCLAT 250 (735)
T ss_pred eeeccccceeee
Confidence 999987766543
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.5e-21 Score=144.02 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=126.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|-.||++||+|...|.|+|||+.+...+..+..|..++..+.|+|++ ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999977666778889999999999999955 56778888999999999753 34447788 9
Q ss_pred CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..|+|. ++|. +..+++|+.||.|++||+++. ..+..+. | +.+|..+.+-|.|..|++++ ...++|||+-++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 8775 558889999999999999976 5555554 4 34899999999999999987 45899999986543
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=134.03 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=128.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-- 78 (203)
+.||+.|.+||+|..+|.|.|||+.+-.....+.+|..+|.+++|+++|++|++++.|..+.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888889999999999999999999999999999999999743 33333210
Q ss_pred ------CC---------------------------------C---Cc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 79 ------LS---------------------------------P---NS-VDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 79 ------~~---------------------------------~---~~-v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
.| . +. ..+. |++.|++|++|...|.+.+|+..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0 00 1112 567789999999999999999999988
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..++-.....|.++.++..|++|+.-+.|+.|+.|++....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 887766542479999999999999999999999999987543
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=5.3e-20 Score=136.81 Aligned_cols=148 Identities=19% Similarity=0.286 Sum_probs=129.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4678999999999999999999999977665543 345689999999999999999999999999975 568889999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|.++|..+ |+-+|.++++++.|+.|++||++.-+...++.......+.++.|.+.|.+|+.++.+=.|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999 9999999999999999999999988877777766444799999999999999998776666665
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.6e-21 Score=139.62 Aligned_cols=156 Identities=15% Similarity=0.277 Sum_probs=139.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.||.|...||+|+.||.|+||.+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+. .+++++.+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4689999999999999999999999999998886 899999999999999999999999999999987 5789999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|... |+++|..+++++.||+|++|+..+.+++.++.... +.+|.++..-|.. ..+++|....+|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999988 99999999999999999999999999998886442 3478888888854 678888889999999876554
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.+
T Consensus 427 Vr 428 (508)
T KOG0275|consen 427 VR 428 (508)
T ss_pred Ee
Confidence 33
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=8.4e-20 Score=144.96 Aligned_cols=151 Identities=17% Similarity=0.264 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-------- 69 (203)
++.++.|++.+.|...|+|-+|++++|-....+ ..|..+|++++...-++.+++++.+|.+++||+...
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 357888999999999999999999999887777 478999999999888889999999999999998642
Q ss_pred --------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028802 70 --------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 70 --------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~ 116 (203)
...++.|.+ |.+.++.+ |+|+|++|++++.|++|++||+.++.++-
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 112223456 88999999 99999999999999999999999999998
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCC-CcEEEEeCCC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDD 154 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~ 154 (203)
.+... . ++.++.|+|+|.+||+...| .-|++|-=.+
T Consensus 613 ~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 613 GLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 77665 3 78999999999999999977 6799996443
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=2.7e-20 Score=136.17 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=128.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~ 79 (203)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.++.. .....+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4666 66899999999999999999988888876 5679999999999999999999999999998643 34567888
Q ss_pred CCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.+.|.++ |+|.. ..|++++.|+++++||+++.+ ++..+.+|.+ .|.++.|+ ++..|++|+.|.+|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999999 99965 457789999999999999877 8999999966 89999997 446899999999999997643
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=2.4e-20 Score=139.28 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.||||++|++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.+++|++.. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999998889999999999999999974 567888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|..+ ....++.+.+|+.|+++++|.+.. .....+.++.. .+-|++|-.+ .++++|+.+|.|.+|++.+..+-
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999 777778888888999999999943 44456777744 7889998755 68899999999999999877654
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.5e-19 Score=127.03 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=135.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|.|+++|.+|++++.|.+|++||..++..+.++..+...+..+.|....+.++.++. |.+|+..++.. .+.++.|.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 578999999999999999999999999999999888888999999888888877776 88999999975 588999999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|.|+|-++|++.....|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 899999999999999999999998888777765522 3 478999999999998888999999998754
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
+
T Consensus 175 g 175 (311)
T KOG1446|consen 175 G 175 (311)
T ss_pred C
Confidence 4
No 93
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=144.82 Aligned_cols=154 Identities=11% Similarity=0.165 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~- 79 (203)
++|+.+|+++|.|+.|-.|++.++.+......+.+|.++|.++.|+|.+++|++.+.||.|++|++.. +.+...+.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999999888899999999999999999999999999999999999974 4444443320
Q ss_pred -----C-CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. ...+..+ |+|++..+++.+.++.|.+|+.........++..... .+..++|+|+|.|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223444 9999999999999999999999988888777654222 488899999999999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 261 v~t~ 264 (933)
T KOG1274|consen 261 VDTH 264 (933)
T ss_pred cccc
Confidence 9853
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=2.7e-20 Score=140.88 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=126.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecC--CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-ee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~ 75 (203)
+.|...+++++|+. |.|+|||+... .++..+.. ....|.++.+.|||+.|++|+.-.++.|||+......+ ..
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 45666778888877 89999999753 23334432 34568899999999999999999999999997533222 23
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.. .....+++ .+||.++.++++.||.|.|||+.....+..+.+|++ .+.||.++++|..|.+|+.|.+++.||+++
T Consensus 505 lts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 505 LTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCceeecCCCccceeehhhhh
Confidence 443 34456667 799999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+-
T Consensus 583 grql 586 (705)
T KOG0639|consen 583 GRQL 586 (705)
T ss_pred hhhh
Confidence 8754
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=1.7e-19 Score=142.02 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=135.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----cc----
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD----CS---- 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~---- 73 (203)
.|-|.+++++.|...|.+.+||+.....+.+++.|.+.|++++.+||+..+++++.|.+|++||+..... ..
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 4678889999999999999999998888888899999999999999999999999999999999853111 11
Q ss_pred ----eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.++. -...+.|+ ++|+|++++++-.|.+|+||-+.+-+....+.+|.- ||.||.++||+..++||+.|++|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678899 999999999999999999999999999999999966 999999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028802 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
||-+.=+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 998877665533
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2e-20 Score=136.27 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=130.3
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|... .|++|+.|+.|.+||++++.++..+.. ...-+.|+|+|.+-.+++++.|..++.||++....++.....
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 35777654 677888999999999999877765543 345678999998888999999999999999988888888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...|..+ |+|.|+-|++|+.|.+|+||..+.+...-++....-..|.++.|+.|.+++++|+.|+.|++|.....+.-
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999999 99999999999999999999998776554443222237999999999999999999999999987665543
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3e-19 Score=138.60 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=132.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCe--EEE--------eec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQT--------RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~--~~~--------~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
-++...+|+|+-|+.|++||+.++. .+. .+. ++...|++++.++.|..|++|+..+.+++||.++ +..
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4567789999999999999999762 222 223 6778999999999999999999999999999986 455
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..+.+ |...|.++ .+++|+.+++++.||+|++||+...+++.++..|.+ .|+++..+|+=.++++|+.||.|..=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 667889 99999999 899999999999999999999999999999999977 699999999989999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+++.
T Consensus 284 l~n~ 287 (735)
T KOG0308|consen 284 LRNP 287 (735)
T ss_pred cCCc
Confidence 9985
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=2.9e-19 Score=145.23 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=131.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---------- 70 (203)
++|+|++.+|++++.|++|.+|+..+...+..+.+|.+.|-.+.|.|-|++|++-+.|++|++|.+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 5799999999999999999999999999999999999999999999999999999999999999964310
Q ss_pred -----------------------------------------ccceeeecCCCCceeEE-EeeC-----CC----------
Q 028802 71 -----------------------------------------DCSDRFVGLSPNSVDAL-LKLD-----ED---------- 93 (203)
Q Consensus 71 -----------------------------------------~~~~~~~~~~~~~v~~~-~~~~-----~~---------- 93 (203)
..-..|.+ |..++.++ |+|. ..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00011346 77888888 8772 11
Q ss_pred --EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 94 --~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+++|+.|+.|.||.....+++..+..-....|..++|+|||..|+.++.||+|.++.+...+-+..
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 6788999999999998777776555433334899999999999999999999999999877665543
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-19 Score=125.40 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=119.0
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-------------------------------------------------
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------------------------------------------------- 34 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------------------------------- 34 (203)
+.+.++|++|+.|.++++||+.+|+.+..++
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 3456778888888888888888776544332
Q ss_pred ----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 35 ----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 35 ----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
.+.+.++.+.|.|-+..|++|..+|.|..||+++..+.+..... |...|..+ ++|+..++++++.|.+.++||.
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeeec
Confidence 23455677888888999999999999999999976666666677 88899999 9999999999999999999998
Q ss_pred cCCceeeee-------------------------------------------------------ccCCCcceEEEEEeCC
Q 028802 110 LPNRIIQPI-------------------------------------------------------AEHSEYPIESLALSHD 134 (203)
Q Consensus 110 ~~~~~~~~~-------------------------------------------------------~~~~~~~i~~~~~~~~ 134 (203)
.+-..+.++ .+|-+ +|.+++|+|+
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPd 298 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPD 298 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCC
Confidence 765444332 13433 8999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028802 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
|+..++|+.||.|++.-++.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986653
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=2.3e-19 Score=136.12 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--E-EEeecCCcc--cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--V-QTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~-~~~~~~~~~--~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|+|+.||+|..||.|.+|+..... + ...-..|.. .|++|.|+++|++|++-+.|+++++||++...+++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 4799999999999999999999975432 2 223345655 8999999999999999999999999999987777776
Q ss_pred eecCCCC---ceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 76 FVGLSPN---SVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~~~~---~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
..+ -.. ...|+|+|+.++|++|.. .|.+.+||..+...++.+.-. ...|..+.|+|.=+.|..++.||.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCc
Confidence 655 222 234459999999999864 578999999998888888666 447889999999889999999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
++||-=.+..++
T Consensus 481 ~~vyYdp~~S~R 492 (641)
T KOG0772|consen 481 AHVYYDPNESIR 492 (641)
T ss_pred eEEEECcccccc
Confidence 999865555444
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=134.26 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=127.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
+.|.++++++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999998876666778888888888777531
Q ss_pred ---------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
..+..... -.+.|+++ .++++..+++++.|.++.++|+++.....++.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 01111111 13467888 7889999999999999999999998888777654
Q ss_pred C---CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~---~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. ....+.+.|+|++.|+++|+.||.|+||++.++.....
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 2 12477899999999999999999999999999876543
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.7e-18 Score=117.35 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------C--------eEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N--------TVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~------~--------~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++|+|.|.+.++|+...+++|..... + ..+ ..-+.|.+.|.|.+|+|.|.+|++|+.|..|++..
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999998875431 1 111 22346789999999999999999999999999876
Q ss_pred cCCc---------------------------------------------------cccceeeecCCCCceeEEEeeCCCE
Q 028802 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (203)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (203)
++.. +...+.+.+ |.+-|.++++-++-.
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 5421 122233445 677777887778889
Q ss_pred EEEEcCCCcEEEEEccCCceeeeecc--C----CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 95 VITGSENGLISLVGILPNRIIQPIAE--H----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 95 l~~~~~dg~v~v~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+++|+.|.+|++||++-..++.++.. | ...+|.+++..|.|+.|++|-.|....+||++.+...+.+-
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 99999999999999998777766531 1 11479999999999999999999999999999998776654
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=8.9e-19 Score=139.10 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=120.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|.||. .++|++++.|.+|++|.+....++..+. |..-|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred ccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 46775 4589999999999999999999988775 789999999999 889999999999999999963 33333443
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--cC------CCcceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EH------SEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~--~~------~~~~i~~~~~~~~~-~~l~~~~~d~~i~i 149 (203)
-..-|+++ |.|+|++.+.|+.+|.+++|+....+....+. .+ .. .|+.+.|.|.. ..+++.+.|..|+|
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI 528 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRI 528 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEE
Confidence 35678888 99999999999999999999988665543332 11 12 69999999854 45777788999999
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||.+...
T Consensus 529 ~d~~~~~ 535 (712)
T KOG0283|consen 529 YDGRDKD 535 (712)
T ss_pred Eeccchh
Confidence 9995443
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=136.75 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=131.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEe-ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
..++++++.+.+|++|+..++..+.. +.+|.+.|+++++..-+.+|++|+.|.++++||.. .+.+...+.+ |...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988877 99999999999998778899999999999999986 4789999999 999888
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++ +-...++++|+.|.+|++|++.++..+.++.+|.. +|.++.++ +.++++|+.|+.|++|++.++..-..
T Consensus 296 ~~-~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 296 CL-TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred EE-EccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeee
Confidence 87 34556788899999999999999999999999865 89999987 88999999999999999998765433
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.2e-18 Score=128.48 Aligned_cols=155 Identities=16% Similarity=0.262 Sum_probs=126.3
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+-. .+.||+|+.|.+|++||+.++++..++..|...|.++.|+|. ...|++|+.|+++.++|.+.....-..+.
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-- 327 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-- 327 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--
Confidence 34433 357899999999999999999999999999999999999994 57899999999999999985333333333
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.|-.+ |.|. ...++++..||.|+-+|+|. ++++.++.+|.+ +|.++++++.- .++++++.|+.+++|++..-
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35567777 8664 45667778899999999986 589999999965 89999998865 56789999999999999776
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
.+..
T Consensus 407 ~~~~ 410 (463)
T KOG0270|consen 407 SPKS 410 (463)
T ss_pred CCcc
Confidence 6643
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.2e-20 Score=142.88 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|+.|+.+|+|++||+.. ...++++.+ |..++..
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~s 117 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNITS 117 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcce
Confidence 46788899999999999988777788999999999999999999999999999999999974 577889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+ |+|-+.+.+.++.|+.+.+||++...+...+.+|.. .+..+.|+|+|++++.++.|..++|||+..+..-..++
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9 999999999999999999999998788889999865 78899999999999999999999999998877665555
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.6e-18 Score=123.65 Aligned_cols=146 Identities=15% Similarity=0.253 Sum_probs=116.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe------EE----E-----eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCc
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT------VQ----T-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~------~~----~-----~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
.|+++++|+.||.|.|||++.-. ++ . .-.+|...|.++.|-| |.-.+.+++.|.+++|||+.+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 57899999999999999997521 11 1 1135778899999999 6668888999999999999764
Q ss_pred cccceeeecCCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEEeCC
Q 028802 70 KDCSDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d 144 (203)
+....|+ -++.|+.- ++|- ..+|++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 3333444 35566655 6663 44777888888999999999999999999976 8999999998876 5789999
Q ss_pred CcEEEEeCCCc
Q 028802 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.|++||++.-
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999765
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=125.48 Aligned_cols=156 Identities=14% Similarity=0.201 Sum_probs=117.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-----eEE-Eeec-C--------------------------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQ-TRSE-F-------------------------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~-~~~~-~-------------------------------------- 35 (203)
|+||.||++|++++.|++|++|+++.- +.+ ..++ .
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 000 0000 0
Q ss_pred --------------CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcC
Q 028802 36 --------------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 36 --------------~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (203)
|...+..+.....+.+|++++.|..|.+|++. ++.+..+.. .....+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 12223334444446688999999999999997 677777776 55444444 7999999999998
Q ss_pred CCcEEEEEcc---CC-----ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 101 dg~v~v~d~~---~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
--.|+||.+- .| .....+.+|. ..|..++|+++.+.+++.+.||+++|||+.-.....+
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 8889999863 22 2346678884 4899999999999999999999999999876655443
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4e-18 Score=121.89 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=122.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|+|.++.|++++.||++++|++....+...+ .|..++.+++|.+ ...+++|+.||.|+++|+.+. ....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cceeecc-C
Confidence 468888999999999999999999887655555 4688999999986 567899999999999999753 3344555 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..++.|+ +.+....+++|+.|+.|++||.+.......+... . .|.++.. .|..|++|+.++.+.+||+++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccch
Confidence 9999999 8888899999999999999999875555555443 3 6877665 6778999999999999999998654
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=3.2e-18 Score=126.65 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=119.1
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC----CCc
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS----PNS 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----~~~ 83 (203)
..+++|..|++|++||+++..+...+..+. .|+++..++++..|.+++.|.++.+.|+++ ......+.. . ...
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA-~g~k~asD 389 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSA-EGFKCASD 389 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeec-cccccccc
Confidence 346778889999999999998888888754 899999999999999999999999999986 355555443 1 122
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.+ |+|++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4444 9999999999999999999999999998888766442 699999999999999999999999993
No 111
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=2.2e-18 Score=127.03 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.5
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
++|+| +.+.||+|+.|.+|.||.+..+ +++..+.+|..+|-.++|+|.. +.|++++.|..|.+|++.+. .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 4567899999999999999754 3466788999999999999954 67889999999999999874 4
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe---CCCcE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i 147 (203)
.+-.+. |...|+++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.+|..+.+|- .++.+
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444444 89999999 9999999999999999999999999999888888776666778888988544443 57889
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
-+||..+.+..
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998877654
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.5e-18 Score=117.56 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-ccceeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~ 79 (203)
-|++||+++.|++|+|+..+.+ +++.++.+|.+||+.++|.. .|.+|++++.||.|.||.-.+.. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 3789999999999999999853 56789999999999999975 78999999999999999875421 12334456
Q ss_pred CCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCcceEEEEEeCC---C-----------CeEE
Q 028802 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (203)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~---~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~ 139 (203)
|...+.++ |-| -|-.|++++.||.|.|.+.+.. ........|.- .|.+++|.|- | +.|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 755 5778899999999999988753 22344567744 7999999985 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+|+.|..|+||+....
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998874
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=1.3e-18 Score=131.82 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=133.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+.|||.+..+++..||.|.|||+.+..+++.+++|...+.||.++++|..|.+|+-|++|+.||++.. ..+.... .
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg-rqlqqhd--F 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG-RQLQQHD--F 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh-hhhhhhh--h
Confidence 578999999999999999999999999999999999999999999999999999999999999999864 3333222 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...|.++ ++|++.++++|-..+.+.|.... +.....+..| +..|.++.|.+-|+++++.+.|..+..|.+.-+...-
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecC-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 4678888 89999999999999999888754 5555667777 4489999999999999999999999999987776554
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
+
T Consensus 670 q 670 (705)
T KOG0639|consen 670 Q 670 (705)
T ss_pred e
Confidence 3
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=2.8e-18 Score=134.95 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=85.9
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecC--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE
Q 028802 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
++++++.|..|+||++.. ++..+.|++. +.+..--+ ..|.|.++++.+.|.++.++|+.+|+++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 667777788888888864 5666777652 33344444 799999999999999999999999999999999976 899
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998653
No 115
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=4.4e-17 Score=114.49 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=105.9
Q ss_pred CcccccCCEEEEEcC----------CCeEEEEEcCC-CeEEEeecC-CcccEEEEEEeeCCCEEEEe--cCCCeEEEEEc
Q 028802 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----------d~~i~v~d~~~-~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~--~~d~~i~v~d~ 66 (203)
|.|+|+|.+|+.-.. -+...+|-++. +.....+.. ..++|.+++|+|+|+.|++. ..+..+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 469999998765432 13344555432 223333432 34579999999999987554 45679999999
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ...+..+. ...+..+ |+|+|+++++++. .|.|.+||+++.+.+...... .++.++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 34444443 4456677 9999999999864 467999999988888766533 478999999999999877
Q ss_pred C------CCcEEEEeCCCcc
Q 028802 143 H------DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (203)
. |..++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999986543
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.6e-18 Score=120.99 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=131.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|-..|+.+++++.|.+..+||++++.++..+.+|...++.++-+|..+++++++.|.+.++||++..-..+..|.+ |.
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Ht 357 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HT 357 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cc
Confidence 35667899999999999999999999999999999999999999999999999999999999999855556788999 99
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..|++.....+..+++|+.|.+|+|||++.. .++.+++.. .++..++.+..+..|+.--.++.|++||+....
T Consensus 358 dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 358 DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999993344567889999999999999864 577788765 378889998888888888888999999997643
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.6e-18 Score=124.92 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=128.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc------CCc------------
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW------GYF------------ 69 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~------~~~------------ 69 (203)
..+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||.. ...
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 46788899999999999999999999999999999999999999999999999999962 110
Q ss_pred ---------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE
Q 028802 70 ---------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
..++..+++ |...|.+. |-..|+.+++++.|++..+||++++..+..+.+|.. ..+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELt 318 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELT 318 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hcc
Confidence 123344667 78888888 888899999999999999999999999999999954 789
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++-+|..+.+++.+.|.+.++||++...
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhc
Confidence 99999999999999999999999998543
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.8e-17 Score=118.43 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=120.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeee-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
++|+-+|..+++|+.|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999954 56778999999999988665 7999999999999999853 2222211
Q ss_pred ------------------------------------c---CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--cee
Q 028802 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (203)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~ 115 (203)
. .....++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012346777 6777777899999999999888775 444
Q ss_pred eeeccCCC--------cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 116 QPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 116 ~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+++.|.. .+|.+|+|+|.-..|++++.||++.+||-...
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 56666642 25788999999899999999999999996443
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6e-17 Score=111.95 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++-++-++++|+.|.+|++||++-+.++.++.. ..+.|.+++..|.|++|++|-.|....+||++ .+.+++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeee
Confidence 345678899999999999999998877776642 23578999999999999999999999999998 4789999
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.. |...|+++ |+|...++++++.|..|++-|+.-. -++.....|.+ .+..+.|+|..--+++.+.|++..+|
T Consensus 269 f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 269 FHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEe
Confidence 999 99999999 9999999999999999999998632 23444556755 66778999999888999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
-+.
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 764
No 120
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=118.23 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=121.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeec-----CCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-----~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+.|.|++..|++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ ++++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35899999998876 78999999987644 33332 2355678889999 677777654 789999999975554
Q ss_pred ceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 148 (203)
...-.. |...+..+ |+|+-. +|++|+.||.|++||.+. ..+++.+.+|.. .|+++.|+|.- +.|++++.|..+.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 444455 88899999 999755 566888899999999985 567888999966 89999999954 6778999999999
Q ss_pred EEeCCCcccCC
Q 028802 149 LWDLDDILKGS 159 (203)
Q Consensus 149 iwd~~~~~~~~ 159 (203)
+|-...-...+
T Consensus 285 Lsca~svSSE~ 295 (370)
T KOG1007|consen 285 LSCASSVSSEQ 295 (370)
T ss_pred EEecccccccc
Confidence 99887665444
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.9e-17 Score=125.40 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=126.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
||||.+.+.||.+-.+|.|.+|++..+ -+...+.++ ...|.+++|.+ +..|++.+.+|.|..||+.+ .++...+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 588999999999999999999999875 333445544 45799999994 55678888899999999986 466677777
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+.++++ .+|.+..++.||.||.+..++..++.......... .++|.+++|+|++..|++|+.||.|++||+.++.
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 88999999 89999999999999988888887776654432221 2489999999999999999999999999998775
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.-
T Consensus 188 t~ 189 (691)
T KOG2048|consen 188 TL 189 (691)
T ss_pred eE
Confidence 43
No 122
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=119.98 Aligned_cols=147 Identities=9% Similarity=0.203 Sum_probs=113.7
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--cccccee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDR 75 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~ 75 (203)
|+|||.. ..+++|+-||+|+|||++.+. .....+.|.+-|+-|.|+....+|++|+.+|+++|||++. .+.++..
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 5799975 478999999999999999872 2223378899999999999888999999999999999985 3467888
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-------------------ceeeeeccCCCcceEEEEEeCC
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
|+- |..+|+++ |+|. ...|++++.|..|.+||+..- +.++...+. ..+..+.|++.
T Consensus 343 fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~Q 419 (440)
T KOG0302|consen 343 FKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHRQ 419 (440)
T ss_pred EEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheeccC
Confidence 998 99999999 9985 567778889999999998521 122222232 25788999986
Q ss_pred C-CeEEEEeCCCcEEEEe
Q 028802 135 R-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 135 ~-~~l~~~~~d~~i~iwd 151 (203)
- -+|++.+.|| +.||.
T Consensus 420 iPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 420 IPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCeEEEecccc-eeEEE
Confidence 5 4677777776 44543
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.76 E-value=7e-19 Score=122.84 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=129.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+-++++.|-+.+|||.-+|..+..++ |.--|..++|+.|.++|++|+.+..++|||++....+...+.+ |.+.|.
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir 147 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIR 147 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcce
Confidence 34456778889999999999998877775 6777999999999999999999999999999877778888999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+ |....+.|++++.++.|++||.+++..++.+... . +|+++.++++|++|.++ ..+.|.+||..+...-
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s-~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-S-PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL 218 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-C-CCcceeeccCCCEEEEe-cCceeEEeccccccce
Confidence 99 8888899999999999999999999999998766 3 79999999999887655 4678999999887543
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=1.8e-17 Score=129.55 Aligned_cols=138 Identities=20% Similarity=0.317 Sum_probs=121.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEE
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
.|++|+.|.++++|-.. ++...+.+|...|+.++.-|.+ .+++|+.|.+|++|.- +..+++|.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999754 5666799999999999999877 8899999999999963 678899999 999999994
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
--+...++++++||.|++|++ +|..+..+.+|+. -|+++...+++..+++++.|++++||+....
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~ 251 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDEC 251 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecCce
Confidence 445557889999999999998 7899999999965 7999998888899999999999999997643
No 125
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.5e-16 Score=115.29 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=121.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecC---CcccEEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeecCCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-++|+++-. ..|+|||+.+.+++.++.. +...+..+.+++.+.+|+.-+ ..|.|.+||+.+ -..+..+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 456666655 4599999999999888754 344566666666667888643 368999999975 467788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~-v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++ |+++|.+|++++..|+ |+|+.+.+|+.+..++.... ..|.+++|+|++++|++.+..++|+||.+....
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 9999999999999987 88999999999999976543 368999999999999999999999999998765
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=4.9e-17 Score=116.16 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=122.9
Q ss_pred ccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|-| |..++.+++-|.+++|||..+.+....++- ++.|.+-+++|= ..++++|..+-.|++.|+. .+..-+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 444 445777888999999999999887766654 577888888883 4577888889999999997 4788899999
Q ss_pred CCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCC-ceeee--------------eccCCCcceEEEEEeCCCCeEEEE
Q 028802 79 LSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPN-RIIQP--------------IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~-l~~~~~dg~v~v~d~~~~-~~~~~--------------~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
|...|.++ |+|...+ |++|+.||.|++||++.. .+... -..|.+ .+..++|+.++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 9998776 557889999999999743 22222 234433 78999999999999999
Q ss_pred eCCCcEEEEeCCCcccC
Q 028802 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887654
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.5e-17 Score=121.50 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=113.9
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------------
Q 028802 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------- 69 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~------------- 69 (203)
+|.. ..+++|+.||.|++||+.+..+...+..|.+.|..|++.. ..+++++.|.+|+.|.+...
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~g 152 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLG 152 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccc
Confidence 3444 4689999999999999999999999999999999999876 67788888998998874310
Q ss_pred -------------c-----------ccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeee-----
Q 028802 70 -------------K-----------DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI----- 118 (203)
Q Consensus 70 -------------~-----------~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~----- 118 (203)
+ .++..+.. ....+.++ |+|-.. .|+++..|+.|.+||++++.++..+
T Consensus 153 Idh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 153 IDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR 231 (433)
T ss_pred cccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc
Confidence 1 11122222 33446666 777554 4556668999999999877654332
Q ss_pred -------------------------------------ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 -------------------------------------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+| ..+|.++.|+|.|+.+++|+.|.+|+||.++.+..+
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcch
Confidence 233 237999999999999999999999999999877655
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=8.3e-17 Score=115.70 Aligned_cols=145 Identities=16% Similarity=0.250 Sum_probs=122.6
Q ss_pred EEEEEcCCCeEEEEEcCCC------------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.|++|++...|.=+++... .++..+..|.+.|++++. ++.++++|+.|-+|+|||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 4778888888777766421 123455678999999987 589999999999999999985 4667777
Q ss_pred ecCCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |.+.++++ |.+.-. .|++|+.||.|.+|+.....++..+.+|.. .|+.++.+|.++..++.+.|+.+++|++-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 877654 899999999999999999999999999977 79999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 158 ~Gr~a 162 (362)
T KOG0294|consen 158 RGRVA 162 (362)
T ss_pred cCccc
Confidence 77543
No 129
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.9e-17 Score=123.97 Aligned_cols=151 Identities=14% Similarity=0.295 Sum_probs=131.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----Ee-------------e-cCCcccEEEEEEeeCCCEEEEecCCCeEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR-------------S-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----~~-------------~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~ 62 (203)
|+++|+.+++++++.+++|.-|++.++... .. - +.|...+.+++.++|+++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 578999999999999999999999876522 11 0 25677899999999999999999999999
Q ss_pred EEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
||+..+ ...++.+.+ |.+.|.++ |-.....+++++.|+.|++|++.....+.++.+|.. .|.++.-..-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999985 678888999 99999999 766677899999999999999998888999999965 79888887788888888
Q ss_pred eCCCcEEEEeCCC
Q 028802 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+++++|++..
T Consensus 305 grDrT~rlwKi~e 317 (479)
T KOG0299|consen 305 GRDRTVRLWKIPE 317 (479)
T ss_pred cccceeEEEeccc
Confidence 8999999999943
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=1.3e-17 Score=129.85 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=123.9
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCC-eE----EEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc----
Q 028802 3 FAADAMKLLG--TSGDGTLSVCNLRKN-TV----QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~v~d~~~~-~~----~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~---- 70 (203)
|..+.+++|+ ++.-|.|-||++... ++ +-.+ .....|+.+.|.| |...|++++.||.|++|.+...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444555554 344689999999753 22 1122 2356799999999 77899999999999999996533
Q ss_pred --ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 71 --DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 --~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
.+...++. |...|+++ |+| -...|++++.|-+|.+||+.+++....+.+|++ .|..++|+|+|+.+++.+.||+
T Consensus 666 ~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 666 EMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCce
Confidence 23455677 99999999 998 457888999999999999999999999999977 8999999999999999999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++|..++.++.
T Consensus 744 ~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 744 LRVYEPRSREQP 755 (1012)
T ss_pred EEEeCCCCCCCc
Confidence 999999887654
No 131
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.5e-17 Score=122.12 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=123.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----- 75 (203)
|+|+++|..|++++.||++|||+......+.....|...|.+|.|+|||.+|++.+.+ ..+||++... ..+..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5799999999999999999999988777777777888999999999999999999999 8999999753 11100
Q ss_pred ---------------------ee--------------cCC-------------CCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 76 ---------------------FV--------------GLS-------------PNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 76 ---------------------~~--------------~~~-------------~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
+. .++ ...+.++ .+++|++++.|+.+|.|.+
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 00 001 2357778 8999999999999999999
Q ss_pred EEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+-+.++.. +.| ..-|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999887776555 456 44899999999999999999898888887754
No 132
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=110.12 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=121.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------C-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~---------~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+|+|.+++|++|..+|.|.+..+.. + ..+...++|.++++.++|. ..+|++++ ||.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 6899999999999999999999863 2 2344557899999999998 34666665 59999998753211
Q ss_pred ------cceeeecC-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.++..... ....|.++ ..|..+-+++++.|+.++-||+++|+...++++|++ -|.+++.-.....++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 11111110 22357788 689988899999999999999999999999999987 689988855566789
Q ss_pred EEeCCCcEEEEeCCCcccCCC
Q 028802 140 SISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+.||++++||+++.+.-+.
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ecCCCccEEEEeccccceeEE
Confidence 999999999999999876544
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.6e-17 Score=121.70 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=122.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-ccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~ 74 (203)
++|+.+++.|++++.+|.|++||++...++..+.... -.-++++.++++.+|++|+..|.|.|||... ..+++.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 4689999999999999999999999998887775422 2335677789999999999999999999642 234556
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCC--cceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.+.. -...|..+ |+|++.+|+.++. ...+++..+.+......+..... ..++||+|+|.+-++|.|...|.+.+
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 6665 66788999 9999999998886 56799998887665555543321 26899999999999999999999999
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9874
No 134
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.2e-17 Score=129.95 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=123.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.|+| |...||+++.||.|++|.+..+ .+...++.|...|+++.|+| -...|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 45777 6678999999999999998753 34567788999999999999 457889999999999999986 46
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCC----C
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~ 145 (203)
....+.+ |...|..+ |+|+|+.+++.+.||+|+||..++++ .+..-.+.-+.+--.|.|..+|+++++.+.| +
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6678899 99999999 99999999999999999999988764 3333333222233457899999999887754 4
Q ss_pred cEEEEeCCCcc
Q 028802 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|.+||..+..
T Consensus 791 Qv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 791 QVQMYDAQTLD 801 (1012)
T ss_pred hhhhhhhhhcc
Confidence 68888876654
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=4.5e-17 Score=120.19 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=108.9
Q ss_pred eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc------ccceeeecCCCCceeEE-EeeC-CCEEEEEcCCC
Q 028802 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg 102 (203)
.+.+|.++|..++|+| +.+.|++|+.|.+|.||.+...+ .++..+.+ |...|..+ |+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 4458999999999999 45778899999999999996432 44667888 99999999 9986 46788999999
Q ss_pred cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.|.+|++.+|+.+.++. |.+ -|+++.|+.+|.+|++.+.|+.|+|||.+++..-+.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999999988887 766 799999999999999999999999999999876544
No 136
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=115.29 Aligned_cols=146 Identities=14% Similarity=0.231 Sum_probs=113.5
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCccccce-eeecCCCC-c
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPN-S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~-~ 83 (203)
..+|++-..|.|++||..+++.+..+.++...+..+.|.. ..+.+.+++.||+|++||++...+.-. .+.. +.+ +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 3578888889999999999999999999999999999987 567889999999999999997544332 2333 442 3
Q ss_pred eeEE-EeeCCCEEEEEcC----CCcEEEEEccCCce-eeee-ccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 84 VDAL-LKLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~----dg~v~v~d~~~~~~-~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..++ ..-.++.+++|.. +-.|.+||++..+. +..+ ..|.+ .|+++.|+|.. +.|++|+.||.+.+||+...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3444 3446777777764 45699999997655 4443 56655 89999999965 68899999999999998755
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=1.8e-15 Score=113.14 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=113.8
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4789999876 5667889999999999887776665433 5678999999977655 4589999999975 344555543
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
...+..+ |+|++.+++++..++ .+.+||..+++.+..+... . .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2335667 899999999888765 4677898887766554333 2 457799999999886554 6899999999887
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=2e-16 Score=118.66 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=113.2
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCc----
Q 028802 1 MTFAADA--MKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~---- 69 (203)
|+|+|-. +++|+|..-|+|-+||+.+. .-+..+..|..+|.+|.|+|. ...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788865 47889999999999999532 234566789999999999994 467888888998888777531
Q ss_pred ----------------------------------------cccceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEE
Q 028802 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (203)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~ 107 (203)
+.....+.. |...|..+ ++|. ..+|++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111111222 55578888 7885 4568899999999999
Q ss_pred EccCC--c--eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 108 GILPN--R--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 108 d~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|++.- + ++.....|.. .|.++.|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99852 2 2333445644 89999999988779999999999999984
No 139
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.3e-17 Score=112.69 Aligned_cols=146 Identities=15% Similarity=0.214 Sum_probs=118.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCC--CEEEEecCCCeEEEEEcCCcc-c-cceeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFK-D-CSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~v~d~~~~~-~-~~~~~~~~ 79 (203)
-|.+||+++.||.|.||.-.+++ .......|...|++++|.|++ -.|++++.||.|.|.+.+..+ - .-.....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 58899999999999999988773 334556889999999999964 678899999999999987642 1 2234455
Q ss_pred CCCceeEE-EeeC---C-----------CEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEEEEeCCC----CeE
Q 028802 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (203)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l 138 (203)
|.-.+.++ |.|. | +.|++|+.|..|+||...++. ....+.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 7664 4 569999999999999988763 3355889977 79999999953 579
Q ss_pred EEEeCCCcEEEEeCC
Q 028802 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||++.||-.+
T Consensus 227 AS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKD 241 (299)
T ss_pred EEecCCCcEEEEEec
Confidence 999999999999876
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.8e-16 Score=115.94 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=124.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc-------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~------- 70 (203)
|.|+|....|++++.|+++++|-+.. +..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46999999999999999999998864 455666666678999999999998 88889999999999996421
Q ss_pred -----ccceeee-----------c-------------------CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 71 -----DCSDRFV-----------G-------------------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
+.++.|. + -..+.+..+ |+.+++.|++++.+|.|++||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 0 013456777 889999999999999999999999999
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..+.......-++++.++++.|||+|+..|.|.|||..+..
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 888876533244678888999999999999999999976654
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.71 E-value=4.5e-16 Score=121.90 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=120.3
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
|++ .+++|+.|.+|++|.- ++.+.++.+|...|+.+++.+++ .|++++.||.|++|++. +.++....+ |..-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 7899999999999985 67889999999999999998765 57888999999999984 688888999 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++ ..+++..|+++++|+++++|+.. .+.+.+..++. .|+++.+-++|.. ++|+.||.|+||..+.-
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDI-vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDI-VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCE-EEeccCceEEEEEeccc
Confidence 999 68888999999999999999965 77777776654 7999999888754 67778999999987644
No 142
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=2.9e-16 Score=111.89 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=121.3
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee
Q 028802 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+||| +|+.+++. .|+++..||+++......+. .|...|..+.|+|+.+ +|++++.||.|++||++....++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5787 67777776 46999999999877666664 6888899999999775 578899999999999998888999999
Q ss_pred cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-----------------------------ceeeeeccCCCcce
Q 028802 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (203)
+ |...++++ |+|. ..+|++++.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 9884 567888999999999875321 12345566755 89
Q ss_pred EEEEEeCCCCe-EEEEeCCCcEEEEeCCCc
Q 028802 127 ESLALSHDRKF-LGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 127 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~ 155 (203)
++++|+.-..+ +|+.+.||.+.|=.+...
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 99999986665 678899999988766543
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=113.14 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=114.3
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c-----ccceeee
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K-----DCSDRFV 77 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--~-----~~~~~~~ 77 (203)
..+++|++++.|..|.+|++. |+.+..+.......+..+.+|+|+++++++..--+++|.+-.. + .-+..+.
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 356899999999999999998 8888988887777888899999999999999999999987421 1 1234568
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-------------C---------cee-------------------
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-------------N---------RII------------------- 115 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-------------~---------~~~------------------- 115 (203)
+ |...|..+ |+++...+++.+.||.+++||+.- + .++
T Consensus 276 G-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 G-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred c-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 8 99999999 999999999999999999999731 1 000
Q ss_pred eee------------ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 116 QPI------------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 116 ~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.+ ..|. ..|.+++|+++|+++++++ |+.++++-
T Consensus 355 ~~~~se~g~~~~~~e~~h~-~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHS-TTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEEcccCccchhHHHhhc-CceeeEEecCCCcEEeeec-ceeeeeec
Confidence 000 0132 3699999999999999987 77888875
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=119.35 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+ ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..+++|+.||.++.++.....-.......+.
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc
Confidence 4788 466788888999999999999999999998889999999999999999999999888887764322222222225
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHS--EYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-----~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+.+.++ |+|++..|+.|+.||.|++||...+..+...+ ... ..-|+++.|-.+ ..|++|..-|+|.+||.
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDS 232 (691)
T ss_pred cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcc
Confidence 6889999 99999999999999999999999887766322 111 124677777755 57889999999999999
Q ss_pred CCcccCCCCC
Q 028802 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
..+...+...
T Consensus 233 ~~gTLiqS~~ 242 (691)
T KOG2048|consen 233 IFGTLIQSHS 242 (691)
T ss_pred cCcchhhhhh
Confidence 8887766544
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.1e-16 Score=124.07 Aligned_cols=153 Identities=18% Similarity=0.297 Sum_probs=127.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|+|.|+|++|++++.||.|++|+.... ....++..+...|.+++. .+.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 478999999999999999999997654 333444446677777764 566999999999999999874 333333444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..-+++++ ++.+|++++.|+.|-.|++.++........+++|.. +|.++.|+|++.+||+.+.||.+++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 56678888 899999999999999999999999989999999955 9999999999999999999999999999877654
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=5.2e-16 Score=112.25 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=114.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--c---
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--D--- 71 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~--- 71 (203)
|.|.|.. ++|++++.|..|++|++++..++..+ .+|...|.++.|++++.+|++++.|.++++|++.... .
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 3466754 68999999999999999999888777 5799999999999999999999999999999996210 0
Q ss_pred -------------------cceeee--------------------------------------------c----------
Q 028802 72 -------------------CSDRFV--------------------------------------------G---------- 78 (203)
Q Consensus 72 -------------------~~~~~~--------------------------------------------~---------- 78 (203)
..-.+. .
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 000000 0
Q ss_pred --CCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccC-CCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 79 --LSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 --~~~~~v~~~---~~~~~~~l~~~~~dg~v~v~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+....++-+ |.|-++.|+.|...|.|.+||++...+. .++..+ ....|...+|+.|+..|+..+.|+.|.-|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 011223344 3555677889999999999999876542 222211 12379999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|..
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 864
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.7e-16 Score=110.99 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=117.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
+++-...+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.....+.-...-..
T Consensus 102 ~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 102 YSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred eeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence 445567899999999999999987555555554 347887765 57899999999999999999755444332322456
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCC--------cceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~----~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.++++ +.|++.-+++++.+|.|.+=.+... .....++.|.. .+|.+|+|+|--..|+||+.||.|.+
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 78899 7899999999999999998766654 33445555532 37999999999899999999999999
Q ss_pred EeCCCccc
Q 028802 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||+.+.+.
T Consensus 259 Wd~~~rKr 266 (323)
T KOG1036|consen 259 WDLFNRKR 266 (323)
T ss_pred ccCcchhh
Confidence 99977653
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-16 Score=120.53 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=114.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe--------------------------------------
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------------------------------- 46 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-------------------------------------- 46 (203)
....++++|+..+.|+|||++...+.+.++.|...|+++.++
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 345788999999999999998655555666666666555544
Q ss_pred -----eCCC-EEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 47 -----KNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 47 -----~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
|..+ +|.+++.+|.|.+||+............ |..+...+ |+|. ..+|++.+.|..|.+||+++.+....+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 3222 4556777888999998643233333344 88888888 8885 456778899999999999987777777
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
... . +.+.++|.++|.+|+.|...|.|..||++.....
T Consensus 248 ~y~-~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 248 TYS-H-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eec-C-CcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 654 2 7899999999999999999999999999887543
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=3.2e-16 Score=113.23 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=117.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeE--EE-ee----cCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QT-RS----EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~-~~~~~--~~-~~----~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
|+|+|||.+|++|. .+.|+++|+ +.|.. .. ++ .+..+.|.+++|+|. ...+++++....+-||.-. ...
T Consensus 164 L~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 57999999999875 489999999 44421 11 11 233567889999994 4588999988888777665 357
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-CceeeeeccCCC---cceEEEEEeCCCCeEEEEeCCC
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~-~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
++..+-+ |.+.|+.+ |.++|+.+++|.. +-.|..||++. +.++..+..|.+ .+| -....|++++|++|+.||
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG 319 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCc
Confidence 7888889 99999999 9999999999987 56799999985 456666665533 133 346678999999999999
Q ss_pred cEEEEeCCCc
Q 028802 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++||+.+.
T Consensus 320 ~V~vwdlk~~ 329 (406)
T KOG2919|consen 320 SVRVWDLKDL 329 (406)
T ss_pred cEEEEecCCC
Confidence 9999999884
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.5e-16 Score=110.82 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeE----------EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--c-ee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTV----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--S-DR 75 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~-~~ 75 (203)
+|++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++++.+-.+.+|.+...... + ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 457788899999999998733 3334468889999999876555577777888899988643111 1 12
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.. ....+..+ .-||++.+++++.|+.|+||.-++..++..+..|.. .|.+++|+|+...+|.++.|..|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 34456666 799999999999999999999999999999999965 8999999999999999999999999986
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=108.07 Aligned_cols=155 Identities=17% Similarity=0.305 Sum_probs=107.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEE------------------------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV------------------------------------ 44 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~------------------------------------ 44 (203)
++||++|++|++++.|..|.+||+..|.+++.+.. .++|+...
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 58999999999999999999999998876655532 22232222
Q ss_pred -----------EeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-Cce----------------------------
Q 028802 45 -----------LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NSV---------------------------- 84 (203)
Q Consensus 45 -----------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~v---------------------------- 84 (203)
|.+.|+++++|...|.+.+|+..+. +++..+.- .. ..|
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~ri-ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRI-TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeee-chheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 3344779999999999999998643 23222211 00 111
Q ss_pred --------------------------eEEEeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 85 --------------------------DALLKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 85 --------------------------~~~~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.++|+.+|.+++.++. ...+++|.-..|..+..+.+..+.....+.|+|-...
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee
Confidence 2236667777666553 4557777777777777777765446778889999888
Q ss_pred EEEEeCCCcEEEEeCCCcccCC
Q 028802 138 LGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+++. ..|.+++|.....+...
T Consensus 308 i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 308 IASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred eeec-cCCceEEEEeecccchh
Confidence 8877 68899999987766553
No 152
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-15 Score=112.52 Aligned_cols=146 Identities=13% Similarity=0.155 Sum_probs=125.2
Q ss_pred CEEEEEcCC--CeEEEEEcCCCeEEEeecCC---------cccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccce
Q 028802 8 MKLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~---------~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
..+++|+.. ..+.+||+.+.+.+..-+.. +-.++++.|.+. ...|++++.-+.+++||.+....++.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 356778888 88999999987666544432 234567888887 78999999999999999998888888
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.- ...++.++ ..|.+++|++|...+.+..+|++.++.+.. +.+-++ .|+++..+|..++|++++.|+.++|+|+
T Consensus 242 ~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 242 QFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred Eecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeec
Confidence 8887 78899999 899999999999999999999999988876 666655 8999999999999999999999999999
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
.+.
T Consensus 320 ktr 322 (412)
T KOG3881|consen 320 KTR 322 (412)
T ss_pred ccc
Confidence 884
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=1.2e-15 Score=118.60 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=116.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEe--ecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------ 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~------ 71 (203)
+.|-|....|++++.|.++++||+.++.++.. +.+|...|.+++|.|.. ..|++|+.||.|.|||++-.+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 46778556789999999999999999888766 78999999999999954 6788999999999999974320
Q ss_pred -------------cceee-------ecCCCCc----eeEEEeeCCCEEEEEcC-CCcEEEEEccCCcee------ee--e
Q 028802 72 -------------CSDRF-------VGLSPNS----VDALLKLDEDRVITGSE-NGLISLVGILPNRII------QP--I 118 (203)
Q Consensus 72 -------------~~~~~-------~~~~~~~----v~~~~~~~~~~l~~~~~-dg~v~v~d~~~~~~~------~~--~ 118 (203)
..+.+ .. +... |+.++..|...|++++. |+.|+|||++..... .. +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 00000 11 2222 44447888899998887 999999999864322 11 1
Q ss_pred ccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 AEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|. ...+.++.....|.+|.+.+.|+.|++|++.+....
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 1221 125777888888899988888999999999887543
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=8.2e-15 Score=109.59 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=111.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+.. +.....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 3568889999999999999988888877654 46789999999876 5667789999999875 344444544 333 34
Q ss_pred EE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028802 86 AL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 86 ~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
.+ ++|+++.++++ ..++.|++||+.+++.+..+..+ . .+.+++|+|++.+++++..++ .+.+||..+...
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 55 89999987665 45889999999988877777543 2 468899999999999888664 567789876543
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=4.3e-16 Score=115.28 Aligned_cols=153 Identities=15% Similarity=0.267 Sum_probs=127.2
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCC---------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--
Q 028802 2 TFAADAM-KLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-- 69 (203)
.|.++.. .|++|+.|..|++|-+..+ ..+..+..|...|+.+.|+|+|..|++|+.+|.+.+|.....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555555 8999999999999988642 234566789999999999999999999999999999976510
Q ss_pred -------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 70 -------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 70 -------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
......+.+ |...+..+ |+|++.++++++.|..+++||+..|..+..+..|.. -+..++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 112234556 77888889 999999999999999999999999999999999855 68999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028802 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++++-+.|+..+++.+....
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hhhhhhccCcccceeeeeeee
Confidence 999999999988887765544
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=4.3e-15 Score=112.98 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=120.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++++.|+.+++|+ ..++..+... ..++.++.|+|.| .++.|...|...+.|..+ ..+-.+.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35678899999999999999999 4555554443 5678999999999 999999999999999875 33344444 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +.......-+...+|+.+.|++|+++|.+-+.|-.|..|......
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 7788999 999999999999999999998864 444444433334689999999999999999999999999544333
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.5e-15 Score=116.50 Aligned_cols=109 Identities=26% Similarity=0.316 Sum_probs=91.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-- 70 (203)
++|.|....|++++.||+|.+|+++. -+++.++.+|.++|.|++..+.+..+++|+.||+|+.|.+....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 46778888999999999999999932 15678999999999999999999999999999999999664221
Q ss_pred -------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 71 -------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 71 -------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.....+.+ |...++.+ +++....|++++.||+|++|...
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC
Confidence 23345778 88899888 78888889999999999999763
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=2.1e-15 Score=118.25 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=120.5
Q ss_pred CcccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---
Q 028802 1 MTFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--- 72 (203)
++.||+++++|++.. ...|++|+..+......+.+|.-.|+.|+|+||+++|++.+.|.++.+|.....-..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 467899999999865 346999999988888889999999999999999999999999999999988532111
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeee--eccCCCcceEEEEEeC----CCC-eEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSH----DRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~~~--~~~~~~~~i~~~~~~~----~~~-~l~~~~ 142 (203)
....+. |..-|+.+ |+|++.++++++.|..|.+|..... +.+.. ...+.. +|+.++|.| +.. .++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 122455 88889999 9999999999999999999998766 33333 223323 899999877 222 566777
Q ss_pred CCCcEEEEeCC
Q 028802 143 HDSMLKLWDLD 153 (203)
Q Consensus 143 ~d~~i~iwd~~ 153 (203)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 99999999965
No 159
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2e-15 Score=113.45 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=119.0
Q ss_pred CEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++++++.. -..|.+|.+..........--.++|.+++-+|.|.+|+.|+..|.|++|.+.+ +..+..+.. |-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 45555533 34688888876433332223367899999999999999998999999999975 788888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEcc---------CCceeeeeccCCCcceEEEEEeCCC--CeEEEEeCCCcEEEEeCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |+-+|.+|++|+.||.|.+|.+. +-+++..+..|+. +|+.+...+.| .+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 2357788889966 89999887754 6899999999999999987
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 208 g~ 209 (476)
T KOG0646|consen 208 GV 209 (476)
T ss_pred ce
Confidence 74
No 160
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=4.2e-16 Score=117.26 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=129.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------------------------------------CcccEEEE
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------------------------------~~~~i~~l 43 (203)
.++.+|++|+.|+.-|.|-.+|..++.+...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 4677899999999999999988888765543321 11345567
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028802 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~ 122 (203)
.|.|..-+|++++..|.++.-|+.+ +..+..+.. ..+.+..+ -+|-+..+-+|...|+|.+|...+..++..+..|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 7888777889999999999999975 677777776 67777777 79999999999999999999999999998899996
Q ss_pred CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+ +|.++++.++|+|++|.+.|+.++|||+++..+-+
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 6 99999999999999999999999999999987543
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.2e-14 Score=102.30 Aligned_cols=153 Identities=14% Similarity=0.224 Sum_probs=112.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCc-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~----- 69 (203)
+.|.+-|+++|+|+.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 468889999999999999999997532 45566778999999999976 5799999999999999975211
Q ss_pred c---ccceeeecCCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC--------------------c----------
Q 028802 70 K---DCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN--------------------R---------- 113 (203)
Q Consensus 70 ~---~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~--------------------~---------- 113 (203)
+ ....++.. ....|+.+ |.| -|-.+++++.||.|+||+...- +
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 1 11233444 56778888 866 4667888888998888865210 0
Q ss_pred -------------------------------------eeeeeccCCCcceEEEEEeCC-C---CeEEEEeCCCcEEEEeC
Q 028802 114 -------------------------------------IIQPIAEHSEYPIESLALSHD-R---KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 114 -------------------------------------~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~~~d~~i~iwd~ 152 (203)
.+.++..|+. +|+.++|.|+ | ..||+++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 0111223444 8999999995 2 3588999999 999999
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 7644
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=4.2e-15 Score=107.53 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=118.4
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|||- .+.++.|+....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|.+||++....++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 468884 458999999999999998888888889999999999999999999999986 678999999988888777776
Q ss_pred CCCCc-eeEE-E--eeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 79 LSPNS-VDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 79 ~~~~~-v~~~-~--~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
|... -..| | .|++++|++|+.+|.|++||+.. +.....+..+.. .+..++++|-=..+++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 6652 2233 4 78999999999999999999987 676777777755 78999999997777777643
No 163
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=4.4e-15 Score=113.67 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=82.8
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
.+.|...+|+|||++|++.+.||.++|||+.+ ..++..++. .-+.+.|+ |+|||++|++|++|-.|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 45788999999999999999999999999974 466666676 67778888 9999999999999999999999999999
Q ss_pred eeeccCCCcceEEEEEe
Q 028802 116 QPIAEHSEYPIESLALS 132 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~ 132 (203)
..-.+|.. +|..|+|.
T Consensus 368 ARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFD 383 (636)
T ss_pred Eecccccc-ceeeEeec
Confidence 99999954 89999998
No 164
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.63 E-value=5.2e-15 Score=116.91 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=117.5
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEE-ee---------------------------------cCCcccEEEEEEeeCCCE
Q 028802 9 KLLGTSGDGTLSVCNLRKN---TVQT-RS---------------------------------EFSEEELTSVVLMKNGRK 51 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~---~~~~-~~---------------------------------~~~~~~i~~l~~~~~~~~ 51 (203)
.+++++.|++|++|++..+ ...+ .+ -.....+.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788999999999998742 1110 00 012446899999999999
Q ss_pred EEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Ee-e--CCCEEEEEcCCCcEEEEEccCC-ceeeeeccC-----
Q 028802 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK-L--DEDRVITGSENGLISLVGILPN-RIIQPIAEH----- 121 (203)
Q Consensus 52 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~-~--~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~----- 121 (203)
|++|...|+++||++.. -.....+.. |...|.|+ |+ | ..++|++++.|+.|+|||.... .+++++.+|
T Consensus 474 LAsGDr~GnlrVy~Lq~-l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQE-LEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehh-hhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999975 355556777 99999999 73 4 4578999999999999997421 111221111
Q ss_pred ---------------------------------------C----CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 122 ---------------------------------------S----EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ---------------------------------------~----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ...++.|+..|...++++++.|+.|+||++.++++.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 0 014788888999999999999999999999999988
Q ss_pred CCCCcCCCC
Q 028802 159 SGNNISQAA 167 (203)
Q Consensus 159 ~~~~~~~~~ 167 (203)
..++...++
T Consensus 632 k~FKgs~~~ 640 (1080)
T KOG1408|consen 632 KSFKGSRDH 640 (1080)
T ss_pred eeecccccC
Confidence 777765433
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=7.1e-15 Score=109.98 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=114.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEE------------------eecCCcccEEEEEEeeC-CCEEEEecCCCeEEE
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT---VQT------------------RSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLL 63 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~---~~~------------------~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v 63 (203)
.|+++|.|+.+..|.|||+.--. +.. ...+|...|..|+|+.. .+.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36899999999999999985210 000 11257777888888874 467899999999999
Q ss_pred EEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCC-eEE
Q 028802 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLG 139 (203)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 139 (203)
||+.+ +++...+.. |...|.++ |+| .+.++++|+.|++|.++|.+. ...-..+... + .|..++|.|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99985 688888888 99999999 877 567888999999999999984 2222333333 2 689999999765 466
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028802 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
++..||.++-+|+|...
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 77789999999999874
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.6e-15 Score=117.31 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=127.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|...+|++++. ..|+|||+....++..+......|.+++++|.|..|+.++.++.+..||+.....+.+++.- |
T Consensus 572 v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 368898888888877 78999999988777777777788999999999999999999999999999877788888988 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------CC---ceeeeeccCCC---cceEEEEEeCCCCeEEEEeCCCcE
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~------~~---~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
...++.+ |++.-.++++|+.||.+.|+.-. .. -++..+++|.. ..|..+.|+|...+|++++.||+|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 9999999 99999999999999999988532 11 24566777743 247788899999999999999999
Q ss_pred EEE
Q 028802 148 KLW 150 (203)
Q Consensus 148 ~iw 150 (203)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
No 167
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=1.4e-14 Score=104.58 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=121.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~ 75 (203)
.+|++|+..+|.+.....|.||..... +...++..|...|+.+.|+|..+.|++++.|..-+||.....+ ++.-.
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999998754 5678888999999999999999999999999999999884322 12223
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.. +....+++ |+|.++.|++|+..+.|.||-++...-- +.+.-.-...|.++.|+|++-.|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 344 67788999 9999999999999999999987643221 111111133689999999999999999999999996
Q ss_pred C
Q 028802 152 L 152 (203)
Q Consensus 152 ~ 152 (203)
.
T Consensus 175 a 175 (361)
T KOG1523|consen 175 A 175 (361)
T ss_pred E
Confidence 3
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=104.63 Aligned_cols=151 Identities=17% Similarity=0.309 Sum_probs=114.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEE--eecCCc-ccEEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~-~~i~~l~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
...+.+|+.||+|++||++...... ....+. .+..+++....++.+++|+. +-.+.+||++...+.+..+...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 4568899999999999998754333 333443 56778887777888888765 5689999999876655555433
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
|...|+++ |+| +.++|++|+.||.|.|||+.... .+.++. + ...|..+.|..++ ..|.+.+..+...+|++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 99999999 998 56789999999999999987432 233343 3 3369999999887 45888889999999999
Q ss_pred CCcccCC
Q 028802 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
..+.+..
T Consensus 242 e~~~~~~ 248 (376)
T KOG1188|consen 242 EDGSEET 248 (376)
T ss_pred cCCChhh
Confidence 8776443
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.3e-13 Score=106.60 Aligned_cols=154 Identities=26% Similarity=0.390 Sum_probs=125.2
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce-eee
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~-~~~ 77 (203)
++|+|+++.+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.++.+++||.. .+..+. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999998 55555899999999887 345555 466
Q ss_pred cCCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCce-eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 78 GLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~-~~~~~~~~l~~~~~dg~v~v~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. |.... . .|+|++..+++++.++.+++|++..... +..+..|. ..+.++.|+|++..+++++.|+.+.+|++.+.
T Consensus 240 ~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 240 G-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred C-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 6 66654 3 4899998899999999999999986654 44445563 48999999998888888888888999988776
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 317 ~~~ 319 (466)
T COG2319 317 KLL 319 (466)
T ss_pred ceE
Confidence 543
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=2e-14 Score=102.67 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=115.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec--C
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~ 79 (203)
+-++|.+++-|-+..|||+.++. ....+-.|...|..++|...+ +.+++.+.||.+++||++.. ..-..+.. .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-eHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-EHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-ccceEEecCCC
Confidence 45788999999999999999862 355667899999999999865 57889999999999999853 32222322 0
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCC-CcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSEN-GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d-g~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
...+...+ |++ +.+++++-..+ ..|.+.|++. ..++..++.|.. .|..++|.|.. .+|++++.|....+||+.+
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 12345555 655 45667765544 5699999984 578889999954 89999999955 6899999999999999987
Q ss_pred ccc
Q 028802 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 655
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-15 Score=124.17 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=116.5
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee--cCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|.|++.+. .||+|+.+|.|.|||+...+.-... ....+.|.+++|+.. .+.|++++.+|.+.|||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 46788654 9999999999999999874433333 123567999999874 456788888999999999865 444344
Q ss_pred ecCCCC--ceeEE-EeeCC-CEEEEEcCC---CcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcE
Q 028802 77 VGLSPN--SVDAL-LKLDE-DRVITGSEN---GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~-~~l~~~~~d---g~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i 147 (203)
.. +.+ .+..+ |+|+. ..|++++.| -.|.+||++. ..+++++++|.. .|.++.|++.+ ++|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 33 333 35666 99976 445566554 3599999885 457788888955 89999999966 788999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+|+..+++.-
T Consensus 279 i~wN~~tgEvl 289 (1049)
T KOG0307|consen 279 ICWNPNTGEVL 289 (1049)
T ss_pred eEecCCCceEe
Confidence 99999997644
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.61 E-value=1e-13 Score=100.55 Aligned_cols=144 Identities=17% Similarity=0.260 Sum_probs=114.8
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEEeec--CCcccEEEEEEeeC----CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 9 KLLGTSGDGTLSVCNLRKN---TVQTRSE--FSEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~---~~~~~~~--~~~~~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.+++++. +.+.+|..... ..++... .+......++|+-+ ..+++.++.-|.|+|.|+.. ..+...+.+
T Consensus 57 vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g- 133 (385)
T KOG1034|consen 57 VFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG- 133 (385)
T ss_pred eEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec-
Confidence 3444444 67888887642 3334332 35566778888764 34788888999999999974 677788899
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...|..+ ++|. .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|+++|.+|++++.|..|++|++..
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999 8885 478889999999999999999998877 45644 799999999999999999999999999985
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 43
No 173
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.8e-14 Score=110.48 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=100.5
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~ 74 (203)
++|||||+.|++++.+ ..|++||+.+++. +..+.+ ....++|+|||+.|+++. .+|.+.+|.+........
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4799999999887643 4799999988754 333333 344689999999888764 577666654432233445
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. +...+..+ |+|+|+.|++.+ .++..++|++... .....+ .+ . . ....|+|+|++|++.+.+ .+.+||
T Consensus 286 ~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~-~-~~~~~SpDG~~ia~~~~~-~i~~~D 359 (429)
T PRK01742 286 QLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-R-G-YSAQISADGKTLVMINGD-NVVKQD 359 (429)
T ss_pred eecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-C-C-CCccCCCCCCEEEEEcCC-CEEEEE
Confidence 5665 56666667 999999877665 5677888876532 222223 33 2 2 457899999999888765 466699
Q ss_pred CCCccc
Q 028802 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+.++..
T Consensus 360 l~~g~~ 365 (429)
T PRK01742 360 LTSGST 365 (429)
T ss_pred CCCCCe
Confidence 987653
No 174
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.7e-13 Score=97.95 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=111.0
Q ss_pred CEEEEEcCCCeEEEEEcC-CCeEEEeecCC--cccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccc-cceeeecCCCC
Q 028802 8 MKLLGTSGDGTLSVCNLR-KNTVQTRSEFS--EEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~-~~~~~~~~~~~ 82 (203)
.+|++. ..+.|+||... ..+.+..+... ...+.++.-+....+|+.-+ ..|.|.|-|+..... .-..+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 344444 34789999988 44555555432 23344444333445566544 579999999974322 2356777 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 83 SVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~-v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.|+ .+-+|..+++++..|+ |+|||..+|..++.++...+ ..|++|+|+|+..+|++++..|+|+||.++....
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99999 8999999999999997 89999999999998875543 3799999999999999999999999999976543
No 175
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.58 E-value=4.6e-14 Score=110.01 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=113.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee--eec
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~ 78 (203)
...|+.+..+|.|.++|...-.. +.....|...|..+.|.|....|++++.|.++++||+... .+... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc
Confidence 34688999999999999865322 2445679999999999997778999999999999999753 44443 778
Q ss_pred CCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc--------------------eee-------eeccCCCcceEE-
Q 028802 79 LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------IIQ-------PIAEHSEYPIES- 128 (203)
Q Consensus 79 ~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~--------------------~~~-------~~~~~~~~~i~~- 128 (203)
|.+.+.++ |.| +...|++|+.||.|.|||++... +.. ...++. ..|.+
T Consensus 143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ss 220 (720)
T KOG0321|consen 143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSS 220 (720)
T ss_pred -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc-Cceeee
Confidence 99999999 777 45678899999999999987422 000 011221 14555
Q ss_pred --EEEeCCCCeEEEEeC-CCcEEEEeCCCcccCC
Q 028802 129 --LALSHDRKFLGSISH-DSMLKLWDLDDILKGS 159 (203)
Q Consensus 129 --~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 159 (203)
+.+..|...||+++. |+.|+|||++......
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 666778889998886 9999999999876554
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.9e-13 Score=98.41 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-----
Q 028802 7 AMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~----- 70 (203)
|+.+|+++.|+++.||.-.. .....++....+.|+.+.|.| -|-.|++++.||.++||+.....
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 78999999999999997521 123456666788999999999 46788999999999999774210
Q ss_pred -------------------------------------------------------------ccceeeecCCCCceeEE-E
Q 028802 71 -------------------------------------------------------------DCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 71 -------------------------------------------------------------~~~~~~~~~~~~~v~~~-~ 88 (203)
..+..+.. +..+|+.+ |
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~w 231 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISW 231 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeee
Confidence 00011123 56788888 8
Q ss_pred eeC----CCEEEEEcCCCcEEEEEccCC--------------------ceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 89 KLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 89 ~~~----~~~l~~~~~dg~v~v~d~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.|. ...|++++.|| |+||.+... +.+..+..|.. .|+.+.|+-.|..|++.+.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 774 46789999999 999998731 12344567744 89999999999999999999
Q ss_pred CcEEEEeCCCc
Q 028802 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.+++|...-.
T Consensus 310 G~VRLWkany~ 320 (361)
T KOG2445|consen 310 GCVRLWKANYN 320 (361)
T ss_pred ceeeehhhhhh
Confidence 99999976433
No 177
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.58 E-value=3.6e-13 Score=102.74 Aligned_cols=150 Identities=14% Similarity=0.267 Sum_probs=100.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---------- 70 (203)
|+|.++|. +++|..+|.|.||+..+.+..+....|.+.|.++....+|.+|- |+.|..|..||-....
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 46777775 67888889999999887777666668888899988888886655 8888888888742110
Q ss_pred cccee-----------------------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE------------
Q 028802 71 DCSDR-----------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG------------ 108 (203)
Q Consensus 71 ~~~~~-----------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d------------ 108 (203)
..+++ ..+ |....+.+ .+|+.+.+++++.|+.+++|+
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe-cccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 00000 012 33334444 456666666666666666665
Q ss_pred --------------------------ccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 109 --------------------------ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 109 --------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||-+...
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 333222222222 238999999999999999999999999987543
No 178
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.5e-13 Score=106.02 Aligned_cols=154 Identities=17% Similarity=0.099 Sum_probs=102.1
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.+|||||+.|++.+.. ..|++||+.+++... +......+..++|+|||+.|+. .+.++...+|.+.........+
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 3699999999887642 469999999886543 3333345668899999998864 5667776666654333345555
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEc--cCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. +....... |+|+|+.|+..+. .+...+|.+ .++.... +..... ......|+|+|++|+..+.++ .|.+
T Consensus 280 t~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 280 TQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-CcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 54 44444555 9999999887654 455555554 4444322 222212 344678999999998776543 6999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+.++...
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999876543
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=4.2e-14 Score=108.57 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=94.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+|+|.-|++++.||.|++|. ++|-+..++.....+|.|++|.|+.+.++.+.. +.+.+=.+... ..+-.... |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n-~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN-SKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc-cceeEEec-cC
Confidence 5999999999999999999999 445455555556788999999999887776543 55666666532 33445677 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
+-|.++ |++..++|++|+.|-..++||.. |..+..-..| +.+|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999954 4444444444 224444444444
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9.8e-15 Score=119.98 Aligned_cols=154 Identities=9% Similarity=0.123 Sum_probs=126.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeCC-CEEEEecCC---CeEEEEEcCCccccc
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~~-~~l~~~~~d---~~i~v~d~~~~~~~~ 73 (203)
|+|+..- ..|++++.+|.+.|||++..+.+..+..+. ..+..++|+|+. ..|++++.| -.|.+||++.....+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 3566544 357888999999999999887766665443 357889999976 556666654 479999999877888
Q ss_pred eeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEE
Q 028802 74 DRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLW 150 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw 150 (203)
+.+.+ |...|.++ |++.+ .++++++.|+.|.+|+.++++.+..+.... .++..+.|.|... .++.++.||.|.||
T Consensus 247 k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~-nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG-NWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC-cceeeeeecCCCcchhhhheeccceeee
Confidence 99999 99999999 87755 888999999999999999999999998764 4899999999775 67888899999999
Q ss_pred eCCCcc
Q 028802 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
.+.+..
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987765
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=2.6e-13 Score=100.74 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--------C--------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR--------K--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~--------~--------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~ 64 (203)
+.|+|+|..||+|+.+|.|.+|-.. + ......+.+|...|..++|+|+++++++++.|+.+++|
T Consensus 71 vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 71 VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 4699999999999999999999865 2 12345667899999999999999999999999999999
Q ss_pred EcCC
Q 028802 65 SWGY 68 (203)
Q Consensus 65 d~~~ 68 (203)
|+..
T Consensus 151 Dv~~ 154 (434)
T KOG1009|consen 151 DVHA 154 (434)
T ss_pred Eecc
Confidence 9974
No 182
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=112.92 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=129.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
++++.-++++|+--+.|.+|.....+....+.+|.+.|.++.|+-+|+++++.+.|.++++|++.+.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4556667888988999999998744333468899999999999999999999999999999999865444446677 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.++.+ +.|. .+++++.|.+.++|+.. +..+..+..|....|..++..++...+++++.|+.+++|++.+...+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 99888 8887 99999999999999754 6677788888766899999999999999999999999999987765543
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=109.23 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=116.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCc--------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~-------- 69 (203)
|.|+.+|.+|++|+.|-.+.|||....+++..+ ++|...|.++.|-| +.+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877777666 68999999999999 4568889999999999999631
Q ss_pred -cccceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-------eeeeec-cCC-CcceEEEEEeCCC-C
Q 028802 70 -KDCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-------IIQPIA-EHS-EYPIESLALSHDR-K 136 (203)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~-------~~~~~~-~~~-~~~i~~~~~~~~~-~ 136 (203)
......+.. |...|..+ -.|.+ +.+.++++||+|+-||++... +...+. .+. .-...++.++|.. .
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 122233445 66666666 46766 788899999999999998521 111111 111 1146788999966 5
Q ss_pred eEEEEeCCCcEEEEeCCCc
Q 028802 137 FLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~ 155 (203)
+|++|+.|--.++||.+..
T Consensus 215 ~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred eEEecCCCchhhhhhhhhh
Confidence 6889999999999995443
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.1e-13 Score=105.87 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=106.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCC--------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQS-------------------- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d-------------------- 58 (203)
|+..|.|..|++|+.||+|+||.+.++.++.++.. .+.|.+++|+|.+. .|+++...
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 35678899999999999999999999999887764 34577777777543 22222111
Q ss_pred -------------------------------------------------------------CeEEEEEcCCccccceeee
Q 028802 59 -------------------------------------------------------------GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 59 -------------------------------------------------------------~~i~v~d~~~~~~~~~~~~ 77 (203)
..|.|+++.. ......|.
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~PF~ 563 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQSPFR 563 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccCchh
Confidence 1122222211 11111222
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. ..+.+.++ |+|...++++++. ..|++||+..+..+..+..... .|..++.+|.|..|+.++.|+.+..||+.-.
T Consensus 564 k-skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 564 K-SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred h-cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 2 34556677 9999998888776 4699999988777766655534 7999999999999999999999999998655
No 185
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=9e-14 Score=106.60 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=108.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEee----cCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---------
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~--------- 70 (203)
|.+--|++|-.-|.|.+.|....+....+ ......++++.|-|.+ ..++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34555677777788888886542221111 1234789999999954 566677789999999874211
Q ss_pred ------------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEE
Q 028802 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (203)
.++..+.- ....|... |+|||++|++.+.||.++|+|..+.+.+..+...-+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 00111111 23456666 899999999999999999999998777766665534 7899999
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|||+||++|+.|..|.||.+....
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987765
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.9e-13 Score=100.60 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=120.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------CeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
|.||.++++|++|+.|..+++|.+.. .+++.... .|.+.|.+++|....++|++|..+++|...|+.+. +.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc-eee
Confidence 46899999999999999999999853 35555554 45689999999999999999999999999999853 444
Q ss_pred eeeec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eee-eeccCCCcceEEEEEeCCC-CeEEEEeCCCcEE
Q 028802 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 148 (203)
..+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+..+ .+. .+.+......+.+.|+|.. ..|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44332 033578888 89999999999999999999998654 221 1222223368899999966 5677888888999
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99987653
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.7e-13 Score=106.72 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=101.7
Q ss_pred CcccccCCEEEEEc-CCCeEE--EEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTS-GDGTLS--VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~--v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|||+.|+++. .+|.+. +||+.++.. ..+..+...+..+.|+|+|+.|+.++ .++...+|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 47999999888764 577655 556666554 44555666788899999999877554 57888888875433333333
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. +.. ..+ |+|+|+.|++.+.++ +.+||+.+++........ ....+.|+|+|++|++++.++.+.+|.+.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 345 899999999887765 566999888765332222 24567899999999999988888888763
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=4.4e-14 Score=111.12 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=115.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|-|||..|+.+.. ..+.+||...|..+.++++|...|.+++|+.+|..+++|+.|..|.+|.-...+. + -.+ |
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L--kYS-H 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L--KYS-H 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e--eec-c
Confidence 578999998877654 5799999999999999999999999999999999999999999999998654322 1 134 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...|.|+ |+|-...+++++.. ..-+|..... .+...+.. .+|.+.+|..||++++.|-.+|+|.+-+-
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 8999999 99999999888764 3457876543 22222222 37889999999999999999999998754
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.5e-12 Score=93.89 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=111.4
Q ss_pred ccccc--CCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceee
Q 028802 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~--~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~ 76 (203)
++||+ +.+|+.-+ ..|.|.+||+.+-+.+..+..|.+.+.+++|+++|.+|++++..|+ |+||.+.. ++.+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 44554 34777643 3689999999999999999999999999999999999999999886 78999975 5666666
Q ss_pred ec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-------------------------------------eee
Q 028802 77 VG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-------------------------------------IQP 117 (203)
Q Consensus 77 ~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~-------------------------------------~~~ 117 (203)
.. .....|.++ |+|++.+|.+.+..++|+++-+..... ..+
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt 292 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFAT 292 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeE
Confidence 53 123457778 999999999999999999998753110 000
Q ss_pred eccCCCcce-EEEEEe--CCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 118 IAEHSEYPI-ESLALS--HDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ~~~~~~~~i-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.... .... ..+.+. +...++..++.||.++.|.+....
T Consensus 293 ~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 293 AKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE 333 (391)
T ss_pred EEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence 0000 0011 223344 466888899999999999987653
No 190
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=7.1e-13 Score=106.26 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=123.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.++.|+..|.+.+|++++++.+.++..+...|+++.=+|--..++.|..+|+|.+++++. .+.+..|.. ..+.|+.+
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~-d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ-DWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc-cccceeEE
Confidence 5678999999999999999999999999999999999888888999999999999999985 577888885 46999999
Q ss_pred -EeeCCCEE-EEEcCCCcEEEEEccCCceeeeec-cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 88 -LKLDEDRV-ITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 -~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|..||+.+ ++|+..|.+.+||++..+.+..+. .|.+ .|....|-|....+++++.|..+++|=.+
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCceeEEEee
Confidence 98888655 556667999999999887776665 6644 78999999999999999999998888655
No 191
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-13 Score=104.17 Aligned_cols=131 Identities=9% Similarity=0.158 Sum_probs=107.1
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|.|||..++ |.+++.+|.|.+||+....++... ..|..+...|+|+|.. .+|++.+.|..|++||++. ......+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~ 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccceee
Confidence 457787765 567889999999999876655444 6789999999999955 5677889999999999974 44455555
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
...+...+ |.++|.+|+.|+..|.|..||++. ..++.++..|.. .|++++|-|..
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 46788888 999999999999999999999985 467888889955 79999998875
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.53 E-value=2.1e-12 Score=99.73 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.1
Q ss_pred cccCC-EEEEEcC-CCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecC
Q 028802 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 4 sp~~~-~l~~~~~-d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++.. ...+..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999998 7778888899999999999999998888885 99999999975 466777787
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ ++|++. .+++++.++.|++||...+..+. .+..|.. .. ...|+|++.++++++.|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 899998 55555899999999988777777 6777754 33 33899999888899999999999998766
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 4
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=2e-12 Score=98.58 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcC-CCeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccc--
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS-- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~-~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-- 73 (203)
|+++|++++|++++ .++.|.+|++. ++.. +.... .......++++|++++|++++. ++.|.+|++...+...
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 47899999887664 57889999986 3332 22232 2234678999999999888764 7899999996433222
Q ss_pred -eeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceee-----eeccCCCcceEEEEEeCCCCeEEEEeC-C
Q 028802 74 -DRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 144 (203)
..+.. ......+ ++|+++++++++. ++.|.+||+.+...+. ......+.....++|+|+|++++++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 22222 2234455 8999999876654 6899999997633221 111111224678999999999988775 8
Q ss_pred CcEEEEeCCC
Q 028802 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.3e-12 Score=103.18 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=104.2
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCe--EEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~--i~v~d~~~~~~~~~ 74 (203)
.+|||||+.|+..+. +..|++|++.++... .+......+...+|+|+|+.|+ +.+.++. |++||+.. ....
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~ 283 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTT 283 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceE
Confidence 369999999888753 468999999887653 3444556677899999998876 4455554 77778753 3345
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. +....... |+|+|+.|+..+. .| .|+++|+..+... .+..+.. .+....|+|+|++|+....+ ..|
T Consensus 284 ~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i 360 (435)
T PRK05137 284 RLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSI 360 (435)
T ss_pred EccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEECCCCCEEEEEEcCCCceEE
Confidence 5655 55555556 9999999887764 33 5888888765544 3333322 46678899999999876643 368
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+|++.+..
T Consensus 361 ~~~d~~~~~ 369 (435)
T PRK05137 361 GVMKPDGSG 369 (435)
T ss_pred EEEECCCCc
Confidence 888876543
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.7e-12 Score=89.92 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=111.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-..|..+-++.++.|+.++-||+++|+..+.+++|...|.++.--.....+++|+.||++++||+++ ++.++.+.. ..
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk 198 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YK 198 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-cc
Confidence 3467777788888999999999999999999999999999998755666889999999999999986 455555543 21
Q ss_pred C----------ceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 82 N----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 82 ~----------~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. .|.++ .-+..++++|+. -.+.+|++++.++..++.-. . ++..+.|..+ .+++++..+++.-|.
T Consensus 199 ~~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~d--~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVDD--CVLIGGEGNHVQSYT 272 (325)
T ss_pred ChhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeecc--eEEEeccccceeeee
Confidence 1 12222 334556666554 46899999998888777655 2 6788888544 677777778888888
Q ss_pred CCCccc
Q 028802 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+..-.+
T Consensus 273 l~Gvl~ 278 (325)
T KOG0649|consen 273 LNGVLQ 278 (325)
T ss_pred eccEEE
Confidence 765443
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.5e-12 Score=99.20 Aligned_cols=149 Identities=11% Similarity=0.172 Sum_probs=101.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEE-------eecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCc-c
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQT-------RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYF-K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~-------~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~-~ 70 (203)
++++|++++++++ ..++.|.+|++.+...+. .+. .......++|+|++++++++.. ++.|.+|++... +
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 3689999988654 457999999997632221 111 1344678999999999988876 899999999632 1
Q ss_pred --ccceeeecCC------CCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCCC
Q 028802 71 --DCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 71 --~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
..+..+.. . ......+ ++|++++++++.. ++.|.+|++.... .+..+... .....+.++|+|+
T Consensus 210 ~~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~ 286 (330)
T PRK11028 210 EIECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGK 286 (330)
T ss_pred CEEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCC
Confidence 11222221 1 1112245 8999999999865 6889999986533 22222221 1356789999999
Q ss_pred eEEEEe-CCCcEEEEeCC
Q 028802 137 FLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~ 153 (203)
+|+++. .+++|.+|++.
T Consensus 287 ~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 287 YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEccCCcEEEEEEc
Confidence 998777 48999999874
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.3e-12 Score=101.37 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=100.5
Q ss_pred CcccccCCEEEEE-cCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~ 76 (203)
++|||||+.|+.. +.++ .|++||+.++.... +..+...+....|+|+|+.|+..+. .+...+|.+...+.....+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3699999988765 3344 59999998876544 4444456788999999998877665 3444555332222233444
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc---EEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~i 149 (203)
.. ........ |+|+|++|+..+.+ ..|.+||+.++... .+... . ......|+|||++|+.++.++. +.+
T Consensus 327 t~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 43 33344455 89999999876643 35888999887654 33322 1 2456789999999998887654 677
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
+++....
T Consensus 403 ~~~~G~~ 409 (429)
T PRK03629 403 VSTDGRF 409 (429)
T ss_pred EECCCCC
Confidence 7775443
No 198
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.49 E-value=6.2e-13 Score=100.16 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=116.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCcccc---ceee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC---SDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~---~~~~ 76 (203)
.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|- ..+|++++.|++++|||++..... .-..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4566666777777767999999997644 5667778889999999994 467899999999999999853211 1122
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc----CCceeeeeccCC--Cc--ceEEEEEeCCCCeEEEEeCCCcE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHS--EY--PIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~----~~~~~~~~~~~~--~~--~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.. |...|.+. |+|.+..|++-+.|..|+|||.. ...++.++.... +. ......|.|+..+++++..-..|
T Consensus 366 ~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 366 LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce
Confidence 34 78889999 99998889999999999999973 223333332111 11 23456899999999999999999
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
-|||-..++
T Consensus 445 Dv~~~~~~q 453 (498)
T KOG4328|consen 445 DVFDGNGGQ 453 (498)
T ss_pred eEEcCCCCE
Confidence 999987776
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.4e-12 Score=99.84 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~ 74 (203)
.+|||||+.|+..+ .+..|++|++.+++... +......+..+.|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 36999999988754 34579999998875432 22223335568999999988765 3344 588889864 23 34
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. ....+... |+|+|+.|+..+.. + .|+++++.++... .+..... ......|+|||++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4444 44455566 99999998877654 4 4555566665543 3333322 45678999999999876643 358
Q ss_pred EEEeCCCccc
Q 028802 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
.+||+.++..
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8999887653
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.2e-13 Score=104.92 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=102.6
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecCCCCceeEE-Eee--CCCEEEEEcCCCcEE
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKL--DEDRVITGSENGLIS 105 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~-~~~--~~~~l~~~~~dg~v~ 105 (203)
...+.+|.+.|.++.|+.+|.+|++|+.|-.+.|||... .+.+. .-++ |...|.++ |-| ....+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEE
Confidence 356789999999999999999999999999999999874 34444 4467 99999999 866 567888999999999
Q ss_pred EEEccC----------CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028802 106 LVGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 106 v~d~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++|+.. ...+..+..|.. .|..++-.|++ ..+.+++.||+|+-+|++...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 999974 123455667755 78889999998 678899999999999998753
No 201
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6e-12 Score=99.29 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~ 74 (203)
.+|+|||+.|++.+. ...|++|++.+++... +.........+.|+|+|+.|+. .+.++ .|++||+.. +. +.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 369999999988764 3479999998876532 3333444557899999997764 44444 588999864 23 34
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CCc--EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~--v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|+|+.|++.+. .|. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4554 44444556 9999999887764 444 6677776665432 222212 345689999999998765432 69
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+||+.++...
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999876543
No 202
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=3.6e-13 Score=105.96 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=102.8
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028802 31 TRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 31 ~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v 104 (203)
.++.+|...|.+++.+|+++++++++.. ..|++|...+. .....+.. |.-.|+.+ |+|++++|++++.|+++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceE
Confidence 3556899999999999999999998764 46999998764 55567888 99999999 99999999999999999
Q ss_pred EEEEccCCc----eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 105 SLVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 105 ~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+|...... .......|+. -|++..|+|++.+++|++.|..+++|.....
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred Eeeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999875321 1233567755 7999999999999999999999999998766
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=1.1e-12 Score=95.03 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---- 73 (203)
|.|+|..+.|++++.|..-+||....+ ++...+..+....+++.|+|.++.|++|+....|.||-+... .-.
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 579999999999999999999998433 344455567788999999999999999999999999887532 111
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----C-------------CceeeeeccCCCcceEEEEEeCC
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
+.-.. ....|.++ |+|++-+++.|+.|+..+|+..- + |..+..+... .+.+..+.|+|+
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 11123 56678999 99999999999999999998642 1 1222333222 347999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCccc
Q 028802 135 RKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..|+-.+.|..+.+=|.....+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred CCEeeEecCCCceEEeecCCCch
Confidence 99999999999999999877753
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=2.9e-12 Score=90.14 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.4
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|+|+.+|+. ..+..|.+||+. ++.+..+. ...+..+.|+|+|++|++++. .|.+.+||+.. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999987554 456799999997 55555554 466788999999999998874 46799999974 344444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeee
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~ 118 (203)
+. +. .+..+ |+|+|++++++.. |..++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 33 35666 9999999998874 5678889874 6665443
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=8e-12 Score=98.19 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||+|++|+.+... ..|++|++.++.... +..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 699999999887643 479999998875533 3334455667899999987764 44444 588888764 23344
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~ 148 (203)
+.. +....... |+|+|+.|+..+.. + .|+++++.+++.. .+..+.. .+..+.|+|+|++|+.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 444 44444445 89999988876543 3 5888888776543 3333323 567789999999998887665 789
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99987753
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=6e-13 Score=102.49 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=105.0
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-------ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCc
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~ 103 (203)
++..|...|+.++|.|....|++++.+|.+++|.+.. .-+++.+|.+ |.++|.|+ +.+.+..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 5556778899999999999999999999999999932 1245667889 99999999 7999999999999999
Q ss_pred EEEEEccCC----------ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 104 v~v~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|++... ....++.+|++ +++.+++++....|++++.||+++.|+.....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999965421 23466788976 899999999999999999999999999876665
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4.6e-12 Score=104.27 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEe-eCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~ 77 (203)
.|..+..+|++++.-..|+|||.........+.. ....|+++.-+ +.|+.++.|-.||.|++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666667777777789999999998877776653 34556666543 3578999999999999999985332 344455
Q ss_pred cCCCCc--eeEE-EeeCCCE-EEEEcCCCcEEEEEccCCc--eeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 78 GLSPNS--VDAL-LKLDEDR-VITGSENGLISLVGILPNR--IIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~~-l~~~~~dg~v~v~d~~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
. |... |..+ +.+.|-. |++|+.+|.|++||++... ....+..|- +...+++..++....+|+|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 5 6555 6666 6665544 9999999999999998632 222333332 225899999999999999998 99999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|++...+..
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999766544
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.44 E-value=2.8e-12 Score=102.02 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=112.0
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeE--EEe----ecCCcccEEEEEEeeCC--CEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTV--QTR----SEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~--~~~----~~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
.|+|. ..+|+.|..+|.|.+||++.+.. ... .-.|..+++.+.|..+. .-+++++.||.|..|+++....+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 56774 45778889999999999987643 222 23578899999998754 44899999999999988632100
Q ss_pred --------------------------------------------------------------ceeeecCCCCceeEE-Ee
Q 028802 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (203)
...+.. |.++|.++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 001112 45677777 77
Q ss_pred eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccC
Q 028802 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 90 ~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|=+..++..+.|-.|++|... ...++..+..+.. .+++++|||... .++++..+|.|.+||+.....+
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 766666655559999999977 5667766766654 699999999875 5677778999999999765544
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-11 Score=97.93 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=99.2
Q ss_pred CcccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCe--EEEEEcCCccccce
Q 028802 1 MTFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~ 74 (203)
++|+|+|+.|+. .+.++ .|++|++.++... .+..+......++|+|+|+.|+.++. .+. |+++++.. ....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 369999998754 44444 6999999887653 45555555567899999998887663 444 55666543 2233
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---CCcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH---DSML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i 147 (203)
.+.. .......+ |+|+|++|+..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+. .+.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333445 899999998875433 5899999887665 34322 2 3456789999999877664 3458
Q ss_pred EEEeCCCc
Q 028802 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
.++++.+.
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888654
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=3.9e-11 Score=92.34 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=104.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ ..+.+.++|..+ .++++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 589999999999999999999999999998887644 467899999999998776 589999999875 455655543 2
Q ss_pred -------CCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCcee--eeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEE
Q 028802 81 -------PNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 81 -------~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~ 148 (203)
...+..+ .+|....++.. -..+.|.+.|....+.+ ..+... . ......|+|++++++++. .+..|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345667 57877755555 44588888887665433 233332 2 578899999999887654 667899
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.+...
T Consensus 198 viD~~~~k~ 206 (369)
T PF02239_consen 198 VIDTKTGKL 206 (369)
T ss_dssp EEETTTTEE
T ss_pred EEeeccceE
Confidence 999877643
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=1.9e-12 Score=99.71 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=116.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
..++.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +-...++.. ...+|+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEEE
Confidence 4678888999999887 4566777888999999999999999999999999999999853 444455555 77889999
Q ss_pred -EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 88 -LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 88 -~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.|+...++.+..+ .+.+=.+.....+..+++|.+ -|.++.|++....+++|+.|-..+|||.-...
T Consensus 152 ~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred EECCCCCceEEecCC-eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcc
Confidence 99988877776544 466666666656667889955 89999999999999999999999999976544
No 212
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.2e-11 Score=95.70 Aligned_cols=153 Identities=17% Similarity=0.077 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcC-CC--eE--EEEEcCC---CeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEE--EcCCcc
Q 028802 2 TFAADAMKLLGTSG-DG--TL--SVCNLRK---NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLY--SWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~--~i--~v~d~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~--d~~~~~ 70 (203)
+|||||+.|+..+. +| .+ .+|++.. +................+|+|||+.|+..+ .++...+| ++...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998877543 22 33 4467654 233333322223446789999999877655 45655555 443222
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 143 (203)
.....+.. ....+... |+|+|+.|+....+ ..|.+||+.+++... +..... .+....|+|||++|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44455566 99999999876543 469999998887654 332222 5677899999998875442
Q ss_pred CCcEEEEeCCCccc
Q 028802 144 DSMLKLWDLDDILK 157 (203)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (203)
...|+++++.++..
T Consensus 394 ~~~L~~vdl~~g~~ 407 (428)
T PRK01029 394 ESELYLISLITKKT 407 (428)
T ss_pred CceEEEEECCCCCE
Confidence 35688889876643
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.1e-12 Score=95.63 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=110.3
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.|-|. ...+|+++.-+.|++||.+.+ +++..+...+.+++++...|++++++++...+.+..||++........+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999865 567888888899999999999999999999999999999864444445788
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
..+.++++ .+|..+++++++.|+.|+|+|+.+.+.+....... .++++.+.++-+
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~n 344 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDVN 344 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCcc
Confidence 88899999 89999999999999999999999977776665542 578888866543
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=6.7e-13 Score=100.29 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|-|-.-+|++++..|.++--|+.+|+++..+....+.+..+.-+|-+..+-+|..+|+|.+|... ...++..+.. |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-c
Confidence 4577877788999999999999999999999888878888889999988888899999999999986 4677777778 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.++|.++ +.++|.++++.+.|+.++|||++....+.++... . +...+++|..| +++++....+.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 9999999999999999999999987766666552 2 56777887665 33444556889994
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=1.7e-11 Score=96.88 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=116.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCC-----CEEEEecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
++|..||++++.|..+|+|.+-+-.. +....+ -+..++|++++|+|.. ..+++.....++.+|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 36899999999999999999997543 332233 3467899999999953 467888888889998875 454
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. -.-...|+ +.|+|.+++.|+.++.+++|- +.|-.+.++-.. +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 443333 34455677 899999999999999999996 556666666554 45899999999999999999999999998
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 292 l~fS 295 (1081)
T KOG1538|consen 292 LIFS 295 (1081)
T ss_pred hHHh
Confidence 6543
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=2.1e-13 Score=109.48 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=105.1
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.+.+|...|.|..|...|.++++|+.|..++||...+ ..++....+ |.+.++.+ .+.....+++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecC
Confidence 4457889999999999999999999999999999875 688899999 99999999 77788889999999999999999
Q ss_pred CCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++..+.+|++ +|++++|+|-. +.+.||++++||.+
T Consensus 263 ~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999977 89999999975 66789999999998
No 217
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3e-11 Score=97.41 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC---ccccce
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~ 74 (203)
.+++.|.+.+... +..+.+|....+.... .-..|...+++.+++|.+++++++..+|+|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 3455565554443 4568889887643111 1124666789999999999999999999999995322 123345
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.- |...|.++ |+++|.+|++|+..|.+.+|.+.+++... ++.- +++|..+.++||+.+.+....|..|.+-...
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCCccc-cccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 5666 88899999 99999999999999999999999987332 3322 4489999999999999999999999999887
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 323 dl~~k 327 (792)
T KOG1963|consen 323 DLEIK 327 (792)
T ss_pred chhhh
Confidence 66543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.6e-11 Score=95.53 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=95.2
Q ss_pred CcccccCCEEEE-EcCCCeEEEE--EcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLG-TSGDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~ 76 (203)
.+|||||+.|+. .+.++...|| ++.++. ...+..+........|+|||+.|+..+. .+...+|.+...+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998864 5667765555 454444 3455555555677899999998876554 4666666654322233333
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. ........ |+|+|++|+..+.++ .|.+||+.+++... +... . ......|+|||++|+..+.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223344 899999999877654 59999998876553 3322 2 346789999999988777433 3555
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5553
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.2e-11 Score=89.80 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=103.3
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|+|++||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+.+..|+..++|..........-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 679999999998875 678999999998765555444577889999999999999999999999965432222222333
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Cc-----------eee---e------eccC--CCcceEEEEEeCCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR-----------IIQ---P------IAEH--SEYPIESLALSHDR 135 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~-----------~~~---~------~~~~--~~~~i~~~~~~~~~ 135 (203)
.+.+... |+|+|.+|+.++.... ++|.+.. ++ .+. . ..+. -...+.+++|.|.|
T Consensus 280 -sgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 3455555 9999998887665332 3444321 00 000 0 0110 01368899999999
Q ss_pred CeEEEEeCCC--------cEEEEeCCCcc
Q 028802 136 KFLGSISHDS--------MLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~~ 156 (203)
.+||+.-..+ .|.+||.+...
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 9999876433 36777776543
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.9e-11 Score=94.83 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=100.6
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. .+.++ .|++||+.++.. ..+..+........|+|||+.|+..+. .+ .|+++|+.. .....
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998754 44444 488889887765 445555566678899999998887663 33 677778653 33444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC------C
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~ 145 (203)
+.. ....+... |+|+|+.|+....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 544 44445556 99999999887643 3588888765443 334322 2 46778999999998765532 3
Q ss_pred cEEEEeCCCccc
Q 028802 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|+++++.+...
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 588888865543
No 221
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=6e-11 Score=93.66 Aligned_cols=150 Identities=17% Similarity=0.073 Sum_probs=100.2
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++|++.+++... +......+....|+|+|+.|+. .+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 699999999876543 469999998875533 3333344557899999998874 44444 688888864 23344
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-C--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++++.+++........ . ......|+|+|++|+..... + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-N-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-C-CccceEECCCCCEEEEEEccCCceEEE
Confidence 554 44444555 8999998877654 33 5777788777654322211 1 23457899999999876643 3 588
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
+||+.++..
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 899887653
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.2e-11 Score=101.95 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=112.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccc--EEEEEEeeCCC-EEEEecCCCeEEEEEcCCc-cccceeeec
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~--i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~-~~~~~~~~~ 78 (203)
.|+.+++|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.. ....-.+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 4789999999999999998753 345666777766 99999998775 4999999999999999863 111112222
Q ss_pred CCC--C-ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------CcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 79 LSP--N-SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 79 ~~~--~-~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
+. + .++++ .++....+++|+. +.|.||++. |+.+..++.+. ...+.|++|+|-.-.||+|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 3 48888 7999999999998 899999975 45444443321 23689999999999999999999999
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
||.....
T Consensus 1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred EeecCCc
Confidence 9987654
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.3e-11 Score=98.09 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=120.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC--C--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK--N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~--~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++||+++++|+|..||.|.+|.--. + .....+..|...|.+++|+++|.+|++|+..+.+-+|.+.+.+ .+-+.
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999997443 1 2234566788999999999999999999999999999998643 22333
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC----------CcceEEEEEeCCCCeEEEEeCCCc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
. -..+|..+ ++|++.+.+....|..|++....+.....++.+-. ..-.+.++++|.-+.++..+..++
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3 56788888 89999999999999999998875544333332211 113566889997778888999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|.+||+-+-...
T Consensus 369 vQ~ydl~td~~i 380 (792)
T KOG1963|consen 369 VQFYDLYTDSTI 380 (792)
T ss_pred EEEEecccccee
Confidence 999999776554
No 224
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=8.4e-11 Score=93.07 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCe--EEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~--i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++||+.+++... +..........+|+|+|+.|+. .+.++. |+++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999998876542 368999998875432 2222233457899999998865 455564 77777753 33444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++|+.+++... +..... .....+|+|||++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 554 44444555 9999998887654 33 47777877776543 222212 2345789999999887654 33 466
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 678777643
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=6e-11 Score=99.07 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=110.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-----C--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-c----
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRK-----N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~-----~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~---- 71 (203)
++++.++++|+.||+|++|+.+. + +...++.....++..+...+.+..+++++.||.|++.++.... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 34558999999999999999864 1 1222333346788899999999999999999999999987521 1
Q ss_pred -cceeeecCCCCceeEE--E-eeCC-CEEEEEcCCCcEEEEEccCCceeeeeccC--CCcceEEEEEeCCCCeEEEEeCC
Q 028802 72 -CSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEH--SEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
+......-..+.+..+ + ...+ ..++.+..-+.|..||++...-...++.. .+ .|++++.+|.+.+++.|+..
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCC
Confidence 1111111012344444 3 2223 47888888899999999876655444322 13 79999999999999999999
Q ss_pred CcEEEEeCCCcccCCC
Q 028802 145 SMLKLWDLDDILKGSG 160 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~ 160 (203)
|.+.+||++=..+...
T Consensus 1217 G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILS 1232 (1431)
T ss_pred ceEEEEEeecCceeec
Confidence 9999999987665543
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=94.93 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=114.5
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----CCCC--
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LSPN-- 82 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~~-- 82 (203)
|+.++....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|..||.+.. ..+..+.. .+.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh-hhheeeecccccCCCcccc
Confidence 444444467999999999999988888899999999999999999999999999999753 33333321 0222
Q ss_pred ---ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC--CeEEEEeCCCcEEEEeCCCcc
Q 028802 83 ---SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|+++ |+.+|-.+++|+..|.|.+||+++.+++..-......+|..+.|.+.+ ..|++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 38888 888899999999999999999999888765433334589999998763 445444 45789999988887
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
+...
T Consensus 306 ~~as 309 (703)
T KOG2321|consen 306 PMAS 309 (703)
T ss_pred ceee
Confidence 6644
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.6e-11 Score=89.34 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc-------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~------- 71 (203)
++|++.-..++++..|-.|++|+-.. .....++. ....|.+++|-|.+ ..|++++.. -|.+|.......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 46888666788899999999999766 33334432 34679999999955 566666654 489997742111
Q ss_pred ----cceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 72 ----CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ----~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..+.+......+|+++ |.++|..+++++. +..|.|||..++..+.......+ .++-+.|+||+.+|..+..|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 1111221123578999 9999999998886 67799999999877655533323 688899999999999999999
Q ss_pred cEEEEeCC
Q 028802 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.1e-11 Score=92.45 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=93.7
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028802 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~ 119 (203)
..++|+.+|..|++++.||.+++|++.. ...+..... |...|.++ |+|+|++|++.+.+ ..+||+.+++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 5789999999999999999999999864 344445556 88899999 99999999999999 89999998772211111
Q ss_pred ----------------------------c-------------CC------------CcceEEEEEeCCCCeEEEEeCCCc
Q 028802 120 ----------------------------E-------------HS------------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 120 ----------------------------~-------------~~------------~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
. +. ...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 0 00 016899999999999999999999
Q ss_pred EEEEeCCCcccCCC
Q 028802 147 LKLWDLDDILKGSG 160 (203)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (203)
|.|++..+.+.-+-
T Consensus 305 Vai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQY 318 (398)
T ss_pred EEEEEeceeeeeEe
Confidence 99999988865443
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.5e-10 Score=89.50 Aligned_cols=131 Identities=13% Similarity=0.202 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE--ecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDE 92 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 92 (203)
..+++++++.+......+.. .++|+++.|+|+++.+++ |-.--.+.+||++ +.++..+ ..++-.++ |+|.|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHG 323 (566)
T ss_pred cceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCC
Confidence 34688888885555544443 789999999999977654 4456789999986 5565544 34555666 89999
Q ss_pred CEEEEEcC---CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCc
Q 028802 93 DRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDI 155 (203)
Q Consensus 93 ~~l~~~~~---dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~ 155 (203)
++|+.++- .|.|-|||+.+.+++..+... ..+-+.|+|||++++|++. |..++||+....
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 99998764 588999999998888888765 3466799999999998874 678999997654
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.34 E-value=1.7e-12 Score=104.35 Aligned_cols=103 Identities=11% Similarity=0.171 Sum_probs=88.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|...|.++++|+.|..++||...+..++....+|.+.|+.++.+....++++++.|..|++|-+.. +.++..+.+ |.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 4677899999999999999999999999999999999999999998888999999999999999975 688888999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEecccc
Confidence 999999 88753 44555666666543
No 231
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.31 E-value=5.1e-11 Score=85.53 Aligned_cols=145 Identities=10% Similarity=0.100 Sum_probs=107.0
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEee-CCCEEEEecCC-CeEEEEEcCCccccce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMK-NGRKVVCGSQS-GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d-~~i~v~d~~~~~~~~~ 74 (203)
++|...+ +.+|+.+.||.|++||++...- +..-.....+...++|++ |-+++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 4677655 4678999999999999987533 222233356788999998 45677776554 5799999998888999
Q ss_pred eeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCCcceEEEEEeCC-CCeEEEEeCCC
Q 028802 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDS 145 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~ 145 (203)
.+.. |.+.|..+ |.| ....|++++.|..+.+||+.+- .++..+.. +..|..+.|++. +.+|+.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 887 4678889999999999999752 12333333 337999999974 45666654 44
Q ss_pred cEEE
Q 028802 146 MLKL 149 (203)
Q Consensus 146 ~i~i 149 (203)
++.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 5444
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=4.8e-10 Score=81.40 Aligned_cols=97 Identities=12% Similarity=0.242 Sum_probs=80.6
Q ss_pred cCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceeee-cCCCCceeEE-E
Q 028802 14 SGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNSVDAL-L 88 (203)
Q Consensus 14 ~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~-~~~~~~v~~~-~ 88 (203)
-.-|.|+|-|+..... ...+..|.+.|.+++++.+|..+++++..|+ |+|||..+ +..+..+. +.....+.++ |
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEe
Confidence 3468999999876544 4678899999999999999999999999886 78999985 45555554 2234579999 9
Q ss_pred eeCCCEEEEEcCCCcEEEEEccC
Q 028802 89 KLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
+|+..++++++..|+|+++.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999874
No 233
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.6e-10 Score=87.86 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=92.5
Q ss_pred cccccCCE--EE-EEcCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC----eEEEEEcCCc-c
Q 028802 2 TFAADAMK--LL-GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (203)
Q Consensus 2 ~~sp~~~~--l~-~~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~----~i~v~d~~~~-~ 70 (203)
+|||||+. ++ +...+ ..|++.++.+++... +....+.....+|+|||+.|+..+. .| .+..|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 59999975 32 33333 468888988775432 2223344556899999988886553 23 2334665431 1
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEc-CCCc--EEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGL--ISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~--v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
.....+........... |+|+|+.|+..+ .+|. |+++++.. +.....+..+.. .+....|+|||++|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233445 999999888765 4564 44445432 233333444323 56788999999998876643
Q ss_pred --CcEEEEeCCCcccC
Q 028802 145 --SMLKLWDLDDILKG 158 (203)
Q Consensus 145 --~~i~iwd~~~~~~~ 158 (203)
..|.+||+.++...
T Consensus 349 g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 349 GVRQICVYDLATGRDY 364 (428)
T ss_pred CCcEEEEEECCCCCeE
Confidence 46999999877543
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=6.1e-10 Score=86.60 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=123.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
+.-.++-|...|.|.+|+...++....+. .|.++|.++.++.+-..|.+++.|+.+..|+... +.....+.. .+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc-CCCc
Confidence 44567788889999999999998887775 6889999999999889999999999999999864 567777777 7777
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC-----CCeEEE-EeCCCcEEEEeCCCcc
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLGS-ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~-~~~d~~i~iwd~~~~~ 156 (203)
+.++ .+|++..+++++ +.|.+||+++++.+.+|++|.. +|.+++|.-+ |.++++ ...+.-|.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 799999998887 4799999999999999999965 9999999876 666654 4467789999877643
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 224 k 224 (541)
T KOG4547|consen 224 K 224 (541)
T ss_pred c
Confidence 3
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=1.8e-09 Score=83.19 Aligned_cols=146 Identities=15% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
++++ ++-..++.|.|.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+ .+.+..+.. .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcc
Confidence 3444 4556789999999999999999986555445678999999999999999999999985 467777765 34456
Q ss_pred EE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccC------CCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEH------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.+ ++++|+++++++ ..+.+.++|.++.+++..+... ...++..+..+|....++..- ..+.|.+-|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 66 899999999887 4789999999999888877543 123577888888888555554 4577877786654
No 236
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.27 E-value=1.2e-10 Score=92.84 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=112.6
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCC--------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+|.| +-..+++|+..|.|..-+-... +....+..|.++|+.+.++|-+..++.++.|.++++|.......+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 4444 3456889999999987544322 112345568899999999998776666566999999987633455
Q ss_pred ceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCC--ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
+..+.. +...++++ |+|.. ..|+++..+|.|.+||+... .++...... ....+.+.|++.|+.|++|...|++.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEE
Confidence 556666 67778999 99965 56677778999999999743 344444444 23677888999999999999999999
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|++....
T Consensus 512 ~~~l~~~l 519 (555)
T KOG1587|consen 512 ILKLSESL 519 (555)
T ss_pred EEEcCchh
Confidence 99997544
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.2e-10 Score=90.61 Aligned_cols=153 Identities=12% Similarity=0.198 Sum_probs=116.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec------CCcc-----cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~-----~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
..++-..+|++|+.+|.|..||.++...+.++. .|.+ .|+++.|+.+|-.+++|+..|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777889999999999999998765554443 2333 38999999999999999999999999999754
Q ss_pred ccceeeecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
..+..-.. ..-++..+ |.+. ++.+++ .....++|||-.+|+....+... . .+..+++-|++-.++++-.+..+
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCcc
Confidence 44433333 45567777 7443 344444 44567999999999998777654 3 58999999999999999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
..|-+...-+.
T Consensus 338 ~~yyiP~LGPa 348 (703)
T KOG2321|consen 338 HTYYIPSLGPA 348 (703)
T ss_pred eeEEccccCCC
Confidence 88887765443
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.26 E-value=4.1e-10 Score=82.35 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=99.1
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|..+.-++ .....++.|.+|++...+-...+.....++.++.|+|+|+.+ .++..+-.|.||.+.+.. ...+.-
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~- 131 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPH- 131 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecc-
Confidence 355555544 344668899999999988888998888999999999999655 556678999999997532 222222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC------------------------------------CcEEEEEccCCceeeeeccCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSEN------------------------------------GLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d------------------------------------g~v~v~d~~~~~~~~~~~~~~ 122 (203)
....+..+ |+|+|++.+.++.. ..+.|||---.-.+..+ +.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ER 209 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--ee
Confidence 23344555 78888877765432 12333331111111112 22
Q ss_pred CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 123 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+-.+..++|+|.+++|+.|+.|+.++|.+--+
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceee
Confidence 22588999999999999999999998866433
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.6e-10 Score=92.30 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=114.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-EE---EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LT---SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~---~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
+.++++.+..++.+.+|+...+.....+...... .. -+.++++.-++++|+.-+.|.+|+.... ..-..+.+ |.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-He 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-HE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-cC
Confidence 4567888888899999999888776666543321 11 2234556668888999999999999733 33336888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.+..+ ++-+|.++++.+.|+.+++|.+.+++... +.-+|+. +++.++|.|+ .+++++.|.+.++|+...
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 999999 99999999999999999999999987765 6667855 8999999999 999999999999995543
No 240
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.1e-10 Score=85.65 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=102.3
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~ 105 (203)
.+.+|.+.|..|.|+.++++|++|+.|..+++|.+.. ..+++.....-|...|.|+ |.....++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3457889999999999999999999999999999852 1122322222156789999 988889999999999999
Q ss_pred EEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 106 v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.|+++.+.+..+.... ...|+.+..+|..+.|++.+.++.+.+||.+..+
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999988887664332 2379999999999999999999999999998776
No 241
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=5.2e-10 Score=83.39 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=108.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE----EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~ 76 (203)
..+|.+++||++..+....++++..... +... .-...-+.+.+..+...+.++...|.++-+|+-... .....+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 4678899999998888877777764322 2222 122334455666666666665555555555543211 344556
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+ |...+..+ ++||+.+|+++..|..|++-.....-.+..+ .+|+. -|..++.-++ ..|++++.|++|++||+.+
T Consensus 148 lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 148 LG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 67 88889999 9999999999999999999776544444444 45766 5888888766 4589999999999999999
Q ss_pred cccCCC
Q 028802 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.+-+.
T Consensus 225 gk~L~t 230 (390)
T KOG3914|consen 225 GKLLDT 230 (390)
T ss_pred CCcccc
Confidence 987644
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.6e-09 Score=84.31 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=118.2
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CcccEEEEEEee--------------------CCCEEEEecCCCe
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMK--------------------NGRKVVCGSQSGT 60 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~l~~~~--------------------~~~~l~~~~~d~~ 60 (203)
.|-+.++|....||.+++|+...++....+.. -.+..++..|.- +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567899999999999999999887766642 123344444431 1235677888899
Q ss_pred EEEEEcCCccccceeee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
|.+|++.. ++.-..+. +-|.+.+.++ ++.+-..|.+++.|+.+..|+....+.+..+.+... .+.+++.+|||..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999964 45444443 2278889998 788888999999999999999999999988888755 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCC
Q 028802 139 GSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++++ +.|++||+.+.+.-.
T Consensus 160 ~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred Eecc--ceEEEEEccCceEEE
Confidence 9886 789999999887543
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.4e-09 Score=85.88 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=94.8
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. ...++ .|++||+.++... .+..+........|+|+++.|+..+. ++ .|+++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6889999887653 35445555667899999998876554 33 566777653 22 333
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. ........ |+|+|+.|+..... + .|.++|+.+++... +... . ......|+|+|++|+..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999887653 2 58889988876543 3222 1 22356899999998876633 3477
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=1.5e-09 Score=85.30 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred CcccccCCEEEEE-cCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~ 74 (203)
++|+|+|+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|+++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3699999977653 443 35899998877543 34444444557789999998876554 33 577777653 2233
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|++++++.++.++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 34445555 899999999888765 7889998875443 33322 2 245568999999988777543 45
Q ss_pred EEEeCCC
Q 028802 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 6655443
No 245
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.20 E-value=1.7e-08 Score=72.67 Aligned_cols=163 Identities=14% Similarity=0.206 Sum_probs=107.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CcccEEEEEEeeC------CCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~i~~l~~~~~------~~~l~~~~~d~~i~v~d~~ 67 (203)
++||||+.+||.+...|+|+++|+....+ ..+.. ....|..+.|.+- ...|++-...|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999986433 23321 1245667766642 1246666677877777653
Q ss_pred Cc----cccceee--ecCCCCceeEE-EeeCCCEEEEEcCC----C-------cEEEEEccCCceeee------------
Q 028802 68 YF----KDCSDRF--VGLSPNSVDAL-LKLDEDRVITGSEN----G-------LISLVGILPNRIIQP------------ 117 (203)
Q Consensus 68 ~~----~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d----g-------~v~v~d~~~~~~~~~------------ 117 (203)
.. ......| ...+...|.++ ++|..++|++|+.. + -+..|-+-++.+...
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 21 1112222 22135577777 89998888877531 1 245565432211000
Q ss_pred ----------------eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCcC
Q 028802 118 ----------------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 118 ----------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 164 (203)
........|..|.++|||+.||+...+|.|.+|++.+..++..+..+
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 01111236899999999999999999999999999999988877664
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.7e-09 Score=85.67 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=92.3
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. .+.++ .|+++|+.+++.. .+..+........|+|+++.|+..+. ++ .|+++|+.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998865 44555 4888898877653 44444555677899999998876553 34 466666643 22 333
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. ........ |+|+|++|+..+.. + .|.++|+.++... .+... . ......|+|+|+.|+..+. ++ .|+
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999887653 3 4666788777653 33322 1 2234589999998876553 33 367
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776433
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=2.4e-09 Score=77.13 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCC------cccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeecCCCC
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSPN 82 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~ 82 (203)
++-+...|.|.++..........+.+- .....++.|++.+..++++..+|.+.+-+... .-+.++..+. |.-
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~ 166 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEF 166 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cce
Confidence 444555677777765543333333221 11245788999999999999999988544321 1123346777 888
Q ss_pred ceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeee-eccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 83 SVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~-~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+.. |+ .+.+++++|+.|+.+..||++ +++.+.. .+.|+. .|.+|.-+| .+.+|++|+.|..|++||.++..
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 88877 74 355789999999999999999 5555544 455644 688887776 56799999999999999999654
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=1.9e-08 Score=77.21 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=97.9
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCe--EE--Eeec-CCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~~~--~~--~~~~-~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~- 72 (203)
+.|+|++++|++.. ....|++|++.... +. ..+. ......+.++|+|+++++++... ++.|.+|++......
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 36899999887753 34679999987643 31 2222 33466889999999998876654 788999998722211
Q ss_pred --ceeeecC-----CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCce--eeeeccCCCcceEEEEEeCCCCeEE
Q 028802 73 --SDRFVGL-----SPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRI--IQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 73 --~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~--~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
+..+... .......+ ++|+|++|+++.. ...|.+|++. ++.. +..+... +.....++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 1222110 11245566 8999999998775 5679999983 3433 3333332 22478999999999998
Q ss_pred EEe-CCCcEEEEeCC
Q 028802 140 SIS-HDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~-~d~~i~iwd~~ 153 (203)
++. .++.|.+|++.
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 887 66789999763
No 249
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.1e-08 Score=80.22 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=96.7
Q ss_pred cccccCCE-EEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCC--CeEEEEEcCCccccce
Q 028802 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQS--GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d--~~i~v~d~~~~~~~~~ 74 (203)
.|||+|+. ++..+. ...|+++|+.+++...... ..+......|+|||+.|+.. +.+ ..|+++++.. ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 69999985 655433 3579999998886544333 34556678899999877643 333 4677778753 3344
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC------
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 144 (203)
.+.. ........ |+|+|+.|+..+.. + .|+++++.+++........ . ....|+|+|++|+.....
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 5554 44322233 99999988877643 3 5888888877664433222 1 124899999998866643
Q ss_pred ---CcEEEEeCCCccc
Q 028802 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
..|.+.|+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 346 KNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcEEEEEECCCCCe
Confidence 3688888877653
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=2.5e-09 Score=77.02 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=108.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccce-ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSD-RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~ 76 (203)
+.|++.+..++++..+|.+.+-+.....+ ++..+.|...++-..|+. +.+.+++|+.|+.+..||++.++..+. ..
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 35788888899998889998666555433 347788999999999876 457889999999999999985444332 24
Q ss_pred ecCCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 028802 77 VGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd 151 (203)
.. |...|.++ .+ |.+.+|++|+.|-.|++||.+ -++++..-... + .|+.+.++|.-. .|+++-..| .+|-+
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 45 77888888 44 568899999999999999998 46777555444 3 699999999543 333333333 34544
Q ss_pred CC
Q 028802 152 LD 153 (203)
Q Consensus 152 ~~ 153 (203)
..
T Consensus 283 ~~ 284 (339)
T KOG0280|consen 283 SS 284 (339)
T ss_pred ec
Confidence 43
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=2.7e-08 Score=76.32 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=115.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC-eEEEEEcCCccccceeeecCCCCce
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+|.+++..++ |...+.+...+..++. ++...|.-..+..+++.++.|..|| .+-+||... ..++.+.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6788888877 8888888766654432 3556688888888888999999999 899999873 45566776 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC----CcEEEEeCCCcc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (203)
.++ .+|+|++++++.....|.++|+.++.....-+...+ -|+.+.|+|+++++|-+--+ ..|+++|+.++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999 899999999999999999999999987655544433 79999999999999966544 468999988754
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=6.4e-08 Score=74.34 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=102.8
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSG----DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~ 71 (203)
|+++|++++|+++.. .+.|..|.+.. +.+ +............++++|++++|+++.. .|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468999999988765 57899998875 333 3333323455668999999999998874 89999999975433
Q ss_pred ccee---ee----c----C-CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc--e--eeeeccCCCcceEEEEEeC
Q 028802 72 CSDR---FV----G----L-SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 72 ~~~~---~~----~----~-~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~--~--~~~~~~~~~~~i~~~~~~~ 133 (203)
.... +. + + ......++ ++|+++++++... ...|++|++.... . ...+....+.....++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 0 11234556 8999998887654 4579999987654 2 2233334344688999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCC
Q 028802 134 DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+++++++.. .++.|.+|++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999987666 67889999887
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=3.9e-08 Score=72.81 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=107.0
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~ 72 (203)
|+|+|++++|+++.. .|.|-.|.+.. |.+ +........+...+++++++++|+++.. .|.|.++.++..+.+
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 579999999988754 46777777664 543 2222333445588999999999998875 589999998754433
Q ss_pred cee--eecCCCCc----------eeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeee--eccCCCcceEEEEEeCCCC
Q 028802 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 136 (203)
... +.. |.+. +... ++|+++++++... .-.|.+|++..|+.... .....+.....|+|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 222 111 3333 5555 8999999998764 23589999987754322 1112234578999999999
Q ss_pred eEEEEe-CCCcEEEEeCCCc
Q 028802 137 FLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (203)
+....+ .+++|.+|.....
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 987766 6899999998774
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=3.7e-08 Score=85.23 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=102.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---------------CcccEEEEEEeeCCCEEE-EecCCCeEEE
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---------------SEEELTSVVLMKNGRKVV-CGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~l~-~~~~d~~i~v 63 (203)
|+|+| ++..+++.+.++.|++|+..++.... +.+ .-.....|+++|++..|+ +-..++.|++
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 46778 45555666778899999987764421 111 012356799999998554 5556789999
Q ss_pred EEcCCccccce------------eeec-------CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC--
Q 028802 64 YSWGYFKDCSD------------RFVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-- 121 (203)
Q Consensus 64 ~d~~~~~~~~~------------~~~~-------~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~-- 121 (203)
||+.+....+. .+-. ..-.....+ ++++|.++++-..++.|++||..++.........
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 99864321110 0000 000123455 7899998888888999999998876554322100
Q ss_pred ----------CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 122 ----------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 122 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.-.....++++++|+.+++.+.++.|++||+.+...
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 001467899999999888888999999999988653
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=79.24 Aligned_cols=135 Identities=9% Similarity=0.090 Sum_probs=98.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|||+|+++|++++- .+.|-|..+-+..+.+.. -..|..+.|..+..+++++ ..++.|.+|++.. .+-...+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEecc-C
Confidence 699999999999875 788888877665544443 3567788999888776654 5688999999963 233344555 5
Q ss_pred CCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...+..+ |+|+|+.|+. ..-+-.|.||.+.+.+.... ... ...+..++|+|+|++.+.++
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p-K~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP-KTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccc-ccCceeEEECCCCceeeeee
Confidence 6677777 9999966665 45588899999988665532 222 22578899999999987665
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=6.8e-10 Score=96.08 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=115.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.|+.+|+.+..+..||.+.+|.+. +++....+.|........|.. ..+++++ .++.+.+||........-.-+
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 4688999999999999999999987 556667788888888888875 5566654 368999999864433322336
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
. |.+..+++ +-|...+|++|+.+|.|.+||++..+.+.+++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 7 99999999 899999999999999999999998777655543 44 56789999999999999998775
Q ss_pred cCCCC
Q 028802 157 KGSGN 161 (203)
Q Consensus 157 ~~~~~ 161 (203)
....+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 54443
No 257
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.03 E-value=5.2e-10 Score=79.45 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=78.6
Q ss_pred EEEcCCCeEEEEEcCC--Ce--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 11 LGTSGDGTLSVCNLRK--NT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~--~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++|+.+..+..|++.. +. ....+......|..+.+-||++.+++++.|++|+||..++ ..++..++- |...+.+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky-Hsagvn~ 298 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY-HSAGVNA 298 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-hhcceeE
Confidence 4455566788888763 22 2222333345688899999999999999999999999986 578888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 87 L-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
+ |+|+..++++++.|+.|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999986
No 258
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.5e-09 Score=78.76 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=106.8
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceeeecCCCCceeE
Q 028802 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~v~~ 86 (203)
++.+.+-.|-+-++.+|-. +.+. ..+-|.++.|...++++..|..+|.|..+|++.. +.+...+. |...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3445556677777777632 3333 4566888889888999999999999999999753 23344444 7888888
Q ss_pred E--EeeCCCEEEEEcCCCcEEEEEccCCce---eeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 87 L--LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 87 ~--~~~~~~~l~~~~~dg~v~v~d~~~~~~---~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+ .--++.++++.+.+|+|.+||++--++ +.++.+|-.. .-.-+...+....+++++.|...+||.++.+..-.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 8 344788999999999999999986665 7888888432 11123456677888899999999999999776443
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1.4e-08 Score=74.81 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=75.1
Q ss_pred EEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-E
Q 028802 12 GTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 12 ~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
.|...|.|.+..+. .-.++.++.+|...+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 33344444444332 23566788899999999999999999999999999999999754445556677 88888888 4
Q ss_pred eeCCCEEEEEcCCCcEEEEEcc
Q 028802 89 KLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
-+--+.+++++.||.|-+|+..
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhheeeeeccCCCeEEEEecc
Confidence 5566788899999999999974
No 260
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=2.7e-09 Score=54.81 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.5
Q ss_pred CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
++++.++.+|.. .|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999965 899999999999999999999999997
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=3.9e-09 Score=91.63 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=117.5
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
+|...+.++|+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|.+. ..+...... |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 4666788999999999999998877766554 234889999999999999999999999999986 355555555 665
Q ss_pred ceeEE-EeeCCCEEEEEc---CCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..... |-. ..+++++ .++.+.+||..- +..+ .-..|.+ .++++++.|..+.|++|+.+|.|++||++..+
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-VHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccce-eeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 55555 422 4555544 367899999642 2222 2267755 79999999999999999999999999999988
Q ss_pred cCCCCCc
Q 028802 157 KGSGNNI 163 (203)
Q Consensus 157 ~~~~~~~ 163 (203)
.++.+..
T Consensus 2370 l~h~~~~ 2376 (2439)
T KOG1064|consen 2370 LRHTFQA 2376 (2439)
T ss_pred HHHHhhh
Confidence 8876654
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=8.5e-09 Score=80.55 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=110.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028802 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
+.+.+++++.|.+|++|.++. ..+..+++.|..+|.++.|..+.++++++ ||-|.+||.-. +..+....
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456788999999999999874 23556778899999999999988887765 78899999753 34443221
Q ss_pred cC---CCCceeEEEeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccC----CCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.. ..+.|.++-+-+...++.+ +...+|+++|.+.+.....++.- ...-+.+++..+.|++++.+-.+|+|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 10 2233444434455666665 56789999999987654444321 1235789999999999999999999999
Q ss_pred EeCCCcccCC
Q 028802 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
.|.+++....
T Consensus 903 LDaR~G~vIN 912 (1034)
T KOG4190|consen 903 LDARNGKVIN 912 (1034)
T ss_pred EecCCCceec
Confidence 9999987443
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=4.5e-09 Score=53.94 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=36.5
Q ss_pred CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 27 NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 27 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++++.++.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=2.3e-08 Score=73.71 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=107.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-e--EEEeecCC-----cccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-T--VQTRSEFS-----EEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~--~~~~~~~~-----~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.++.|+..++++ .|=.|.+|++.-. + -+.-++.+ ..-|++..|+|. -+.++.++..|+|++.|++....
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 3567778877776 4578999998632 1 12223322 234788889995 46788888999999999984321
Q ss_pred cce---e------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCceeeeeccCCC-----------
Q 028802 72 CSD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~-~~~~~~~~~~~~~~----------- 123 (203)
+.. . |.. -...|..+ |++.|++|++-.. -+|++||+ ...+++.+++.|..
T Consensus 249 Cd~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hcchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 1 111 22356777 9999999988654 47999999 45677777665521
Q ss_pred ---cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 124 ---YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 124 ---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..-..++|+.++.++++|+....+++|++..+..+.
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 123457899999999999999999999987666554
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.2e-07 Score=74.53 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=92.5
Q ss_pred cccccCCEEEEE-cC--CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGT-SG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
.|||||+.|+.. +. +..|+++++.++... .+..+........|+|||+.|+..+. .+ .|++.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 599999877654 32 357888898877643 34433333445689999988776653 33 577777753 232 22
Q ss_pred eecCCCCceeEEEeeCCCEEEEEcCC---------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---
Q 028802 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 143 (203)
+.. .... ...|+|+|+.|+..... ..|.++|+.++... .+... . ......|+|||+.|+....
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 322 1111 22389999999877653 36888898877654 34333 2 2345789999998876553
Q ss_pred CCcEEEEeCCCc
Q 028802 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
...|.+.++...
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 234777777654
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=6.6e-07 Score=68.17 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=103.6
Q ss_pred CcccccCCEEEEEc-C-CCeEEEEEcCCCeEEEeecCCcc-------------------------------cEEEE----
Q 028802 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~-------------------------------~i~~l---- 43 (203)
+++||||++|++.. . +..|-+.|+.+++.+..+..... .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999998765 3 68899999988766654432100 01111
Q ss_pred ----------EEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeec------CCCCceeEE-EeeCCCEEEEEcC-
Q 028802 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSE- 100 (203)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~- 100 (203)
.+.+ ++.+++++.. |.|++.|+... ...+..+.. +..+....+ ++|+++.++....
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1123 6666666665 88999986421 122222211 112223336 8999998888431
Q ss_pred ---------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028802 101 ---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 101 ---------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.+++...
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 247999999999999888765 3 689999999999 777666 67889999999886543
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.8e-09 Score=76.84 Aligned_cols=128 Identities=18% Similarity=0.306 Sum_probs=97.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC-----eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcccc---
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~--- 72 (203)
.|...++++..|.++|.|.++|++.. .+...+ -|.+.|+++.... ++++|++++.+|.|++||++.. ++
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~ 336 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKS 336 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccc
Confidence 35566789999999999999999864 233333 4778899998776 7889999999999999999853 33
Q ss_pred ceeeecCCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC---cceEEEEEe
Q 028802 73 SDRFVGLSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~---~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~---~~i~~~~~~ 132 (203)
+..+.+ |.+...-+ ..+....|++++.|...++|.+..|..+.++..... ..+.+++|.
T Consensus 337 V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 337 VMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 677777 77665544 477788899999999999999999998888765422 134455553
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.8e-09 Score=83.60 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=116.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---------------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---------------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++|+....++++|+.||.++|..+.+. ..-+++.+|...|.-+.|+.+.+.|.++..+|.|.||-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 368888999999999999999987642 12246789999999999999999999999999999998
Q ss_pred cCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
+-...-+...+..+....|.++ |+.+|..|...-.||.|.|=.+...+.. ..+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8643222233333256678888 9999999999999999988776643332 122222 3567899999988888888
Q ss_pred CCcEEEEeCCCc
Q 028802 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
.|.+.+||....
T Consensus 177 nge~hlydnqgn 188 (1189)
T KOG2041|consen 177 NGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEeccccc
Confidence 899999986443
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=1.3e-07 Score=72.64 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=101.9
Q ss_pred cccCCEEEEEcCCC-eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
..+++-++.|..|| .|-|++..+++. ..+...-+.|.++..+++|++++++.....+-+.|+.+. .....-.+ ..+
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~~ 444 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EYG 444 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-ccc
Confidence 34556788888998 899999998865 445556788999999999999999999899999999863 33333333 566
Q ss_pred ceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 83 SVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg----~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
-|..+ |+|++++|+.+--+| .|++||+..++....-+.. . -=.+-+|.|++++|...+
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-c-cccCcccCCCCcEEEEEe
Confidence 78888 999999999887654 5899999887766443322 2 235678999999987554
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=6.7e-09 Score=77.61 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEE
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVI 96 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 96 (203)
..+.+|....+. ...+.+|-+.++.++|+||+++++++..|..|++-........-.-+.+ |..-|..+.-.++..|+
T Consensus 132 ~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 132 YSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLL 209 (390)
T ss_pred eeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceee
Confidence 344455544432 2345588999999999999999999999999999777543223333467 88888888444556699
Q ss_pred EEcCCCcEEEEEccCCceeeee
Q 028802 97 TGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 97 ~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
+++.|++|++||+.+|+++.++
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecCCCCcEEEEecccCCccccc
Confidence 9999999999999999876554
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.4e-07 Score=76.46 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=115.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC------------CEEEEecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~------------~~l~~~~~d~~i~v~d~~~ 68 (203)
+.|+|.| +||.|+. ..|.|.|..+-+.++.++.|...|+.+.|.|-. -.|+++...|.|.+||+..
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 3577766 6777765 689999999999999999999999999999731 1466777889999999975
Q ss_pred ccccceeeecCCCCceeEE-Ee---eCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEe
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LK---LDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~---~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 142 (203)
...+..+.. +..++..+ |- ++. .+++.-.....|.+|+..+|+.......... ...++.+.| |.+.+...+
T Consensus 99 -~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 99 -ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred -hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEc
Confidence 445555666 67777777 52 344 5666667778899999999999888766544 677789998 667888777
Q ss_pred CCCcEEEEeCCCcc
Q 028802 143 HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (203)
..|.+.+-+.-...
T Consensus 176 s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLS 189 (1062)
T ss_pred cCceEEEEeccCCC
Confidence 78888777764443
No 272
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=8.7e-09 Score=78.91 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=118.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccc--ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~--~~ 75 (203)
|-|+..|..|++|+.|..|.+||...+.....+ .+|...|....|.|. -+.+++++.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 357888999999999999999999887766555 477778888888884 4678999999999998776443332 34
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeec--cCCC---cceEEEEEeCCCC-eEEEEeCCCcE
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIA--EHSE---YPIESLALSHDRK-FLGSISHDSML 147 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~--~~~~---~~i~~~~~~~~~~-~l~~~~~d~~i 147 (203)
+.. |.+++.-+ .-|. ...|++++.|+.+.-+|++++.+...+. .+.. ...+.++.+|-.. .+++++.|..+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 455 88888888 5664 4568899999999999998875543332 2212 1467888898665 78999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876544
No 273
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.9e-09 Score=80.75 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=111.7
Q ss_pred cccccC-CEEEEEcCCCeEEEEEcCCC------eEEEeec------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 2 TFAADA-MKLLGTSGDGTLSVCNLRKN------TVQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 2 ~~sp~~-~~l~~~~~d~~i~v~d~~~~------~~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+..|-. ..+++++.|..+++||.+.- ..+..+. .....|++++++.++.-|.++-.|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 345543 47889999999999998642 1122221 2345799999998887777777888899984432
Q ss_pred c-c----------ccce-eeecCCCCc--eeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe
Q 028802 69 F-K----------DCSD-RFVGLSPNS--VDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 69 ~-~----------~~~~-~~~~~~~~~--v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (203)
. + ..+. .+++ |.+. |..+ |-|...++++|+.-|.|.+|+-.+++.+.-+.+... -|.|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 1122 2556 6543 6666 589999999999999999999999999888887755 78999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 028802 133 HDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~ 152 (203)
|--..||+++-|..|+||-.
T Consensus 446 P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCchhhccCCccceeeecC
Confidence 99899999999999999975
No 274
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-07 Score=79.62 Aligned_cols=162 Identities=12% Similarity=0.141 Sum_probs=112.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--e-----EEEeecCC-cccEEEE-EEee--CCCEEEEecCCCeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSEFS-EEELTSV-VLMK--NGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~--~-----~~~~~~~~-~~~i~~l-~~~~--~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
++.+.+..+|+++.||.|++..+... . .......+ .+.+.++ ++.. ....|+.+...+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 34567889999999999999998752 1 11111111 2233333 3433 22378888889999999998532
Q ss_pred ccce-eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC---CeEEEEe--C
Q 028802 71 DCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSIS--H 143 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~ 143 (203)
..+. .... ..+.|+++ .+|.+.+++.|+..|.+.+||++-+.++..+......+|..+..+|-. ...++++ .
T Consensus 1185 ~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1185 DAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 2221 1222 45678888 799999999999999999999998888877765544578888877743 4555554 4
Q ss_pred CCcEEEEeCCCcccCCCCCcC
Q 028802 144 DSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 144 d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.+.|.+|++.++..+...+..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceeeeecccCcceEEEEcC
Confidence 677999999999776665554
No 275
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=3.9e-08 Score=68.81 Aligned_cols=110 Identities=26% Similarity=0.464 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEE--eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc
Q 028802 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~ 125 (203)
-+..+++|+.+|.|++|.....+.....+.. ....+-+++ ..++.+..+++.+|.|+.|++..++.+...-.|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3567899999999999998755555444444 455555553 3456688899999999999999888887776675346
Q ss_pred eEEEEEeCCCCeEEEE--eCCCcEEEEeCCCcccC
Q 028802 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 158 (203)
+.....+..+++|+.. +.|..++.|++......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 6666777777888877 88999999998776544
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=1.8e-08 Score=71.61 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecC-----CCeEEEEEcCCccccceeeecCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.++++..||.+.+++.+.-. ....+........+.++...++.+.++.. -+..+.|+++..+..+.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-- 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-- 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--
Confidence 5678888999999999876521 11122211122223334445555554332 235667776532222211121
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...+.++ -+| +.+.+++|+.+|.+-+||.+... +...+..|.. +|+.+.|+| ++..|++++.||.+-.||..+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 2237777 466 45667788889999999998753 4455677844 899999999 5678999999999999999853
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=6e-07 Score=64.40 Aligned_cols=148 Identities=10% Similarity=-0.030 Sum_probs=99.3
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cCCCCceeEE-
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNSVDAL- 87 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~- 87 (203)
+..++.|.++++.++..+.....+-...-.+.++.++++++++++.+....|..|.+....+.+..+. ......-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 44556677777777664422222211112378899999999999999999999999976555444322 1022222334
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCce-----eeeeccCCCcceEEEEEeCCCC--eEEEEeCCCcEEEEeCCCcccC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRI-----IQPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|+.....++++..||.+.|||++.... ..+-..| .+++..+.|++-|. .|...-.-+.+.+.|+++...-
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~h-nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHH-NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCC-CCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 888889999999999999999986432 1222334 44899999998764 3444445678999999988643
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.81 E-value=1.8e-07 Score=69.03 Aligned_cols=160 Identities=12% Similarity=0.179 Sum_probs=113.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEE---------------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL--------------- 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~--------------- 62 (203)
.++++...|++|-..|++.-+.+.. ....+....|..++..+.|+.....+++.+.|..+.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4567778889998889998887653 233344556777777777776656665555443221
Q ss_pred ------------------------EEEcC-CccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-e
Q 028802 63 ------------------------LYSWG-YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-I 115 (203)
Q Consensus 63 ------------------------v~d~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~-~ 115 (203)
+-.+. +...++..+.+ |.+.+.++ |.|....+.+|..|..+.+||+.-++- .
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 11110 01233445667 88889999 899999999999999999999975443 3
Q ss_pred eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCc
Q 028802 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (203)
..+.+|.. .|..+...+--+.|.+++.||.|.+|++.........+.
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccc
Confidence 45667755 788888877778999999999999999988777666554
No 279
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-07 Score=69.41 Aligned_cols=151 Identities=14% Similarity=0.225 Sum_probs=99.8
Q ss_pred CcccccCC--EEEEEcCCCeEEEEEcCCCeE-----------------------------------EEee-cCCcccEEE
Q 028802 1 MTFAADAM--KLLGTSGDGTLSVCNLRKNTV-----------------------------------QTRS-EFSEEELTS 42 (203)
Q Consensus 1 l~~sp~~~--~l~~~~~d~~i~v~d~~~~~~-----------------------------------~~~~-~~~~~~i~~ 42 (203)
+.|.++++ .++..+.|.+|++|-+..... .+.+ ..|...|.+
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 35666654 456667889999998753210 0011 136677899
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC-C-----CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028802 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-S-----PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 43 l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~-----~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
|.++.|...++++. |=.|.+|.+....+....+.-- + ...|++. |+| ..+.++..+..|.|++.|++....
T Consensus 170 IS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 99999998888764 6789999986543333322210 1 1346666 888 467888889999999999984211
Q ss_pred ----eeeeccCC-----------CcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 115 ----IQPIAEHS-----------EYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 115 ----~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.... -..|..+.|+++|+|+++-.. -+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111110 025888999999999998764 479999984
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=2.6e-06 Score=63.38 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=101.1
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~ 75 (203)
.|.|++++|++..- --.|.+|++..|.+.. .+ ......+.|.|+|++++.++.++ +++|.+|........+..
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 47899999988753 3469999998764422 22 33566789999999999887665 899999998753222222
Q ss_pred eec--------CCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEccC--Ccee--eeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 76 FVG--------LSPNSVDAL-LKLDEDRVITGSEN-GLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 76 ~~~--------~~~~~v~~~-~~~~~~~l~~~~~d-g~v~v~d~~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
++. ........+ .+|+|++|+++..- ..|.+|.+.. ++.. .....+ +.......|++.+++|+++
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEE
Confidence 221 013345666 79999999988763 3577777653 3322 112222 2236788999999999988
Q ss_pred eC-CCcEEEEeCC
Q 028802 142 SH-DSMLKLWDLD 153 (203)
Q Consensus 142 ~~-d~~i~iwd~~ 153 (203)
.. +..|.+|...
T Consensus 309 ~q~sd~i~vf~~d 321 (346)
T COG2706 309 NQKSDNITVFERD 321 (346)
T ss_pred ccCCCcEEEEEEc
Confidence 84 4568888764
No 281
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=1.6e-07 Score=77.25 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=103.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---------CCeEEEEEcCCcccccee
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~ 75 (203)
.+++++.+|...|+|.+-|..+-+.+.++..|.+.|..+ .-.|+.|++++. |..|+|||+++- ..+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 357889999999999999999999999999999988655 557899998875 456899999863 33333
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-Cce-eeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI-IQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.- +.++ .-+ |+|. ...+++++..|...+.|..+ +.+ ......+. +..+..+.+++++..++.+..+|.|.+|
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 332 2333 333 6775 35677788889999988332 111 22222221 2248999999999999999999999999
Q ss_pred e
Q 028802 151 D 151 (203)
Q Consensus 151 d 151 (203)
-
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 8
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=5.5e-08 Score=69.24 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=79.7
Q ss_pred ccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028802 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 38 ~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
..|.+++-+|. .+.+++|+.+|.+-+||.++...+...+.. |+..++.+ |+| ++..|+++++||.+..||..+ ..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce
Confidence 34888888884 466778889999999999976566677788 99999999 988 567899999999999999763 22
Q ss_pred eeeec---cC-----CC-------------cceEEE-EEeCCCCeEEEEeCCCcEEEEe
Q 028802 115 IQPIA---EH-----SE-------------YPIESL-ALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 115 ~~~~~---~~-----~~-------------~~i~~~-~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-. .+ .+ ....++ .|.--|..|++|+.-+.|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 21100 00 00 011122 2445678888888888888875
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.2e-06 Score=62.88 Aligned_cols=140 Identities=8% Similarity=-0.023 Sum_probs=94.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEe--ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 76 (203)
++++++++++++.+....|..|.+... +.+.. .......=.+..|+.....++++..||++.|||++....+....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 357899999999999999999998753 32222 22223445678899999999999999999999998755444333
Q ss_pred ---ecCCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCC-------cceEEEEEeCCCCeEEEE
Q 028802 77 ---VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSI 141 (203)
Q Consensus 77 ---~~~~~~~v~~~-~~~~~~--~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~ 141 (203)
.. |.+.++.+ |++.|. +|+..-.-+.++|.|++++.-.+.+.-..+ ..|..-.|+.++..+.+.
T Consensus 244 strp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 244 STRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 23 67889988 998664 344444557899999998876555433211 124555555554444333
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=5.8e-06 Score=61.32 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=101.2
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcC-CCeEEEeecCCcccEEEEEEeeCCCEEEEecC-------CC---------
Q 028802 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-------SG--------- 59 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~v~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------d~--------- 59 (203)
.|||||++|++.- ..|.|-|||.. +-..+..+..+.-....+.+.||+..|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 5899999998863 35889999998 55777888887777888999999988887532 12
Q ss_pred --eEEEEEcCCcccccee--e--ecCCCCceeEE-EeeCCCEEEEEcCCCc-------EEEEEccCCceeeeeccCC---
Q 028802 60 --TVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAEHS--- 122 (203)
Q Consensus 60 --~i~v~d~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~dg~-------v~v~d~~~~~~~~~~~~~~--- 122 (203)
++.+.|..+ +..+.. + .- |...++.+ +.++|..++..-..|. |.++. .+..+..+....
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 233334432 344433 2 22 45567777 7888776665544432 22332 233333332211
Q ss_pred ---CcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCC
Q 028802 123 ---EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ---~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
..-|-+|++++++.++++.+ ..+.+.+||..++....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 11488999999998886655 78899999999887543
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.69 E-value=6e-06 Score=71.90 Aligned_cols=153 Identities=14% Similarity=0.049 Sum_probs=96.9
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCeEEEeecCC-----------------cccEEEEEEee-CCCEEEEecCCCeE
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFS-----------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-----------------~~~i~~l~~~~-~~~~l~~~~~d~~i 61 (203)
|+++++++.|+++. ..+.|+++|+.++.. .++.+. -...+.++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 45777777666654 456799999877643 222110 11246789999 55666666778899
Q ss_pred EEEEcCCccccceeeec--------------CCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeecc-----
Q 028802 62 LLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAE----- 120 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~----- 120 (203)
++||.... . +..+.+ ..-.....+ ++|++..|++ -..++.|++||+.++.......+
T Consensus 708 ~v~d~~~g-~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG-V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC-e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998532 1 122211 001234456 8999885554 45578999999887653211100
Q ss_pred --------CC-------CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 121 --------HS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 121 --------~~-------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.. ......++++++|..+++...++.|++||..++.
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 00 0124588999999988888899999999997664
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=2.9e-06 Score=67.01 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..+.++ ++|+...++.|+.||.|.+||...+....+ + . ....+.++|+|+|..+++|+..|.|.+||+.-....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-A-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-e-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 45567777 899999999999999999999876533322 2 2 236788999999999999999999999998766544
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=1.3e-05 Score=58.65 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=89.0
Q ss_pred CcccccCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~ 71 (203)
+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.....
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3678889876665433 557777776 54433332 245578999999998776 556688899999864332
Q ss_pred cc---eee---ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEE
Q 028802 72 CS---DRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 72 ~~---~~~---~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 141 (203)
.+ ..+ .. ..+..-.+ +..+|++.++....+.|.+++.. |+.+..+..... .+++++|. ++...|+..
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 122 22 12235556 78899988887788999999987 888888877634 78999995 566665543
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-06 Score=70.83 Aligned_cols=141 Identities=13% Similarity=0.252 Sum_probs=100.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-----CCEEEEecCCCeEEEEEcCCccccce-eeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-----~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~ 79 (203)
+|.++++|+.||+|.|..+-+.+....+.- ..++.+++++|+ .+.+++|+..| +.++.-+-.+.... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 689999999999999999988776655554 467899999997 56889999888 77776432222222 2444
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC-----cceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..++|.++ .-.|++|+-++..| |+|||+.+++.+..+..... .-...+.|.++.+ |+.| ...+|+|..++
T Consensus 159 ~eG~I~~i-~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSI-KWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CccceEEE-EecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 57888888 22678999999888 89999998877766543322 1134567877654 4444 34578888887
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.63 E-value=2.4e-06 Score=66.22 Aligned_cols=147 Identities=12% Similarity=0.148 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEc-----------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec--CCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~ 67 (203)
+.|++.|++|+.-. ...+++++++....+.... .-.++|...+|.|.++.+++.+ ..-.+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence 35788888765421 1356888888754433222 4578999999999888776544 57889999987
Q ss_pred CccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. .....+. ...-..+ |+|.++++++++- .|.+-+||....- +...+.+. ...-+.|+|+++++.+..
T Consensus 307 ~--Nl~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 307 G--NLRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred c--ceEEecC---CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecC
Confidence 3 3433332 2333334 8999999998765 4779999976543 33355554 345678999999987665
Q ss_pred ------CCCcEEEEeCCCcc
Q 028802 143 ------HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ------~d~~i~iwd~~~~~ 156 (203)
.|..|.|||+....
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCcccccCcceEEEEecCch
Confidence 37789999986653
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4.9e-07 Score=70.75 Aligned_cols=135 Identities=12% Similarity=0.069 Sum_probs=93.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-----------CCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----------d~~i~v~d~~~~ 69 (203)
+.|||.|.+|++-..-| |.+|--.+-..++.+. | ..|..+.|||..++|++-+. ...++|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 47999999999987744 8889765544444453 3 34788999999999998543 25799999986
Q ss_pred cccceeeec-CCCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 70 KDCSDRFVG-LSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
+...+.|.. .....++.+ ||.++++++.-..+ .|.||+..+..++-.-..... .|....|+|.++.||--
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCc-cccCcccCCCcceEEEE
Confidence 565555543 023456666 79999999877764 588998765333322111212 58888999998887743
No 291
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.58 E-value=2.2e-06 Score=67.35 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=91.7
Q ss_pred cccccCCEEEEEc---CC-CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCe--EEEEEcCCccccce
Q 028802 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d-~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~--i~v~d~~~~~~~~~ 74 (203)
+|+|+++.++... .. ..++++++.+++....+. -...-...+|+|||++|+.+. .++. |+++|+.. ....
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--KNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--Ccce
Confidence 5889998775542 22 468999998875544333 123344578999998877554 4665 55566653 3344
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CCc--E
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--L 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i 147 (203)
.+.. ..+.-..- |+|+|+.|+..+. .| .|.++++..+.. ..+..... .-..-.|+|||++|+..+. +|. |
T Consensus 276 ~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 276 RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEEEEeccCCceee
Confidence 4543 22222233 8999999998765 34 477777765544 33333322 2236789999999987774 344 6
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.++.+..
T Consensus 353 ~~~~~~~~~ 361 (425)
T COG0823 353 DKNDLASGG 361 (425)
T ss_pred EEeccCCCC
Confidence 666665544
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=5.1e-06 Score=64.68 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=89.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..+++++.+|.++.||..+++.+....... ...+. ..+..+++++.+|.+..+|..+. +.+-.... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEcccc-ccCCccc
Confidence 4567777889999999999998877665211 11222 34667888888999999999753 33322211 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE-EEEEeCCCCeEEEEeCCCcEEEE
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....+..+++++.+|.|+++|..+++.+..+..+.. .+. +.++. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1122467889999999999999999999988876533 222 22332 3 458888899999876
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.56 E-value=1.7e-05 Score=60.59 Aligned_cols=112 Identities=9% Similarity=-0.058 Sum_probs=80.2
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----------CCeEEEEEcCCcc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------d~~i~v~d~~~~~ 70 (203)
++..+++.... +.|.+.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.+||+.+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 34445444332 899999999999988887544333 34 8999998877655 78999999986 3
Q ss_pred ccceeeecCCCC-------ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028802 71 DCSDRFVGLSPN-------SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 71 ~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~ 121 (203)
+.+..+.. ... ....+ ++|+|++++.... +..|.++|+.+++.+..+...
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 55544442 111 11233 7999999998773 688999999999998887654
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=2.9e-07 Score=74.34 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=109.4
Q ss_pred cccccCC--EEEEEcCCCeEEEEEcCC---CeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccccee
Q 028802 2 TFAADAM--KLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~--~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
.|||... +-++......-.+|++.. ......+-+|...|+.+-|+|+. ..+++++.|..+..||++....++..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 4666543 444444456677898864 23445566889999999999965 56789999999999999876666655
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+.. -......+ |+....-+++.+....|.+||++-| .++..+.+|.. .|..+.|..-. ..+.+++.|++++.||.
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 554 33344555 7766666666677778999999865 56777777744 78888886533 46788889999999997
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 232 ~kSt 235 (1081)
T KOG0309|consen 232 SKST 235 (1081)
T ss_pred cccc
Confidence 6543
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2e-06 Score=65.80 Aligned_cols=157 Identities=10% Similarity=0.053 Sum_probs=107.5
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecC--CcccEEEEEEee-CC---CEEEEec-CCCeEEEEEcCCccccc
Q 028802 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMK-NG---RKVVCGS-QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~--~~~~i~~l~~~~-~~---~~l~~~~-~d~~i~v~d~~~~~~~~ 73 (203)
+.+-+|.++++... |..++++|+.+-..+..++. ..+. +.|.. .| ..|+++. .++.+.++|-.....+.
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~ 136 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD 136 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc
Confidence 45667878888776 99999999986544332321 1221 22222 22 1344333 47899999987544444
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccC--------CCcceEEEEEeCCCCeE
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEH--------SEYPIESLALSHDRKFL 138 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~------~~~~~~~~~~--------~~~~i~~~~~~~~~~~l 138 (203)
..+...|..+|.++ +.+.+..+++....|.|.-|.... .+....+... ......++.|+|++..+
T Consensus 137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi 216 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI 216 (558)
T ss_pred ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc
Confidence 55555588999999 899999999999999999998762 1111111110 01246889999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCCCC
Q 028802 139 GSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.+.+.|..|+++.+.++...+..
T Consensus 217 stl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 217 STLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccCcccEEEEEEeccchhhhhh
Confidence 99999999999999999876553
No 296
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.52 E-value=8.9e-06 Score=65.73 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=81.9
Q ss_pred CCeEEEEEcCC-----CeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----------cceeeec
Q 028802 16 DGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVG 78 (203)
Q Consensus 16 d~~i~v~d~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~-----------~~~~~~~ 78 (203)
++.|.++|..+ ...+..+.. ....+.+.++|||+++++++. +.++.|+|+..... ....+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888877 345555543 455788999999999887765 88999999975322 1222333
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC----------CceeeeeccCCCcceEEEE------EeCCCCeEEEEe
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPIAEHSEYPIESLA------LSHDRKFLGSIS 142 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~----------~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~ 142 (203)
..+++..-|.++|+...+...|..|..|++.. ...+..+..|.. +-.+. -.|+|+||++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEEcc
Confidence 34555555899998888888899999999875 234555555532 22222 256777777654
No 297
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.51 E-value=1.9e-06 Score=67.64 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=84.1
Q ss_pred cccccCCEEEEE-cCCCe--EEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~--i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+|||||++|+.+ ..||. |+++|+.++... .+....+.-..-.|+|+|+.++..+ ..|.-.||-....+.....++
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 699999987655 44554 677777776643 3554444445778999999887655 455545544433344445554
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d-g~--v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ....-... ++|+|++|+..+.. |. |.++++.++..+..+... . ......|.|+++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 33333234 89999999987753 43 666777666544444332 1 344556777777766444
No 298
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.1e-06 Score=67.18 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=85.9
Q ss_pred CcccccCCEEEE--EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLG--TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~ 75 (203)
+.|+|+|+.+++ |-.-..+.|+|++.. ++..+ .+++-+++-|+|.|++|+.++. -|.+.|||+.+ .+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 469999976544 445678899998753 44444 3566778999999999998776 47999999986 566666
Q ss_pred eecCCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
+.. .....+-|+|+|.+|++++. |+.++||+. +|..+....-.. ....+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 654 33333339999999999875 567889986 455553332221 255666665
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=3.4e-05 Score=55.96 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=93.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC--
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-- 82 (203)
+++..+++++.++.|+.||..+|+.+...... .++.... ...+..+++++.++.++.+|..+.......... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccc-ccccc
Confidence 36677888889999999999999988777652 2211112 234556666667889999998764333332232 211
Q ss_pred ceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc---ce------EEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 83 SVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---PI------ESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 83 ~v~~-~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~---~i------~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. . ....+..++++..++.|..+|+.+|+.+......... .+ ..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1111 1 3445888899988999999999999998777654311 11 122222344 666666677544449
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+.++.
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 88886
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=3.2e-06 Score=66.76 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=59.4
Q ss_pred CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 35 ~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
...+.+.+.+++|+...|+.|+.||.|.+||.... +..+.. ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999998632 222333 34445666 999999999999999999999854
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=4.7e-05 Score=55.29 Aligned_cols=155 Identities=8% Similarity=0.072 Sum_probs=96.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++.+++|+.||+. .|..|.|-..+.. ..+.+.. ....+=+.++|+||+..|+.+...|+|++||+. +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888775 6688888877653 2222222 233445789999999999999999999999986 233333
Q ss_pred eec------CCCCceeEE-E-eeC-----CCEEEEEcCCCcEEEEEccCC-----ceee--eeccCCCcceEEEEEeCCC
Q 028802 76 FVG------LSPNSVDAL-L-KLD-----EDRVITGSENGLISLVGILPN-----RIIQ--PIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 76 ~~~------~~~~~v~~~-~-~~~-----~~~l~~~~~dg~v~v~d~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~ 135 (203)
+.. .....|..+ | .+. ...+++-...|.++-|-+..+ +... .+..|....|.++.++|.-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 4 121 235666677888877765322 2222 2333323379999999998
Q ss_pred CeEEEEeC-CC----------cEEEEeCCCcccC
Q 028802 136 KFLGSISH-DS----------MLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l~~~~~-d~----------~i~iwd~~~~~~~ 158 (203)
+.|++|+. .. -|..|.+-+..+-
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY 193 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence 88877762 11 2566766655543
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.47 E-value=6.2e-06 Score=70.72 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=97.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-----------------------CeEEEeecC----------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------------------NTVQTRSEF---------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-----------------------~~~~~~~~~---------------------- 35 (203)
++||||+..|+..+.+++|.+..-.= |+....+.+
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 57999999999998888887664210 000001100
Q ss_pred --CcccEEEEEEeeCCCEEEEecC---C---CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCc
Q 028802 36 --SEEELTSVVLMKNGRKVVCGSQ---S---GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (203)
Q Consensus 36 --~~~~i~~l~~~~~~~~l~~~~~---d---~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~ 103 (203)
....-..|+|-.||.++++.+. . ..++||+-. +....+-.. -.+--.++ |.|.|++|++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1123457889999999998764 2 578999864 343333332 33334456 8999999998765 345
Q ss_pred EEEEEccCCceeeeecc---CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 104 v~v~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.+|. ++|-....|.. +....|..+.|++|+..||....|. |.+|-..+.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 66666 44544333322 2234799999999999999877655 999987664
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=9.8e-08 Score=78.49 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=97.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+-+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+.-. -..+|++.......+.|..
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888899999999999999999999999999999999999999888998877665533 4678998755555555554
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CcceEEEEEeCCCCeEE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLG 139 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~ 139 (203)
-.++ |+..-..-+.|+....+.+||++++..+.++-... ...-.++.|+|+...++
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 2344 65544444556665678899999987776632211 11235567777766554
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.2e-06 Score=62.77 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=61.9
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|||..+ ++..++.+..|.|.|+++...+..+..+ .++++++|.-+. ++|+.|..+|.|.+||++.....+..+.
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 57899776 7888999999999999998888877776 889999998865 5667777899999999986554444443
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=2.4e-05 Score=56.72 Aligned_cols=139 Identities=18% Similarity=0.124 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCeEEEeecCC--cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED 93 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 93 (203)
+|+|..||..+|+.+...... .....+. ..+++..+++++.++.++.||..+ ++.+-.+.. ...+.......+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~--~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL--PGPISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC--SSCGGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec--cccccceeeeccc
Confidence 689999999999998877541 1222211 334667788888999999999865 444444432 1111111133556
Q ss_pred EEEEEcCCCcEEEEEccCCceeeee-ccCC-Cc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPI-AEHS-EY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~-~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++++.++.|+.+|..+|+.+... .... .. ..........+..++.+..++.|..+|+.++...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 6777778889999999999998874 3221 10 1122333334788888888999999999988763
No 306
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.44 E-value=1.9e-05 Score=63.89 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=98.5
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC------------------------
Q 028802 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------------------------ 57 (203)
++|||+.+... -..+.+.++|..+.+....+.-.. ....+.++|+|.++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 56677765433 335678888888877766665422 4456778888888776641
Q ss_pred ----------------CCeEEEEEcCC----ccccceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce-
Q 028802 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI- 114 (203)
Q Consensus 58 ----------------d~~i~v~d~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~- 114 (203)
++.|.+.|..+ .......+.. ......+ ++|+|+++++++. +..|.|+|+...+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23466666653 1223333332 3445666 8999999888765 88999999987542
Q ss_pred -----------eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 115 -----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 -----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....... . .....+|.++|....+...|..|..|++.+
T Consensus 357 ~~~~~~~~~~vvaevevG-l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELG-L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccC-C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333333 2 234678999998888888999999999887
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.44 E-value=6.5e-05 Score=55.86 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=97.1
Q ss_pred Ccccc-cCCEEEEEcCCCe-EEEEEcCCCeEEEeecCCcccE--EEEEEeeCCCEEEEecC-----CCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~ 71 (203)
++.+| .+..++.+-+-|+ +.+||..+++....+......- -.-.|++||++|++.-. .|.|-|||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35678 4556677766554 7799999998887776544332 13579999999998644 47899999974445
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeecc----CCCcceEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAE----HSEYPIES 128 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------dg~v~v~d~~~~~~~~~~~~----~~~~~i~~ 128 (203)
.+..+.. +.-....+ +.|+|+.|+++.. +-.+.+.|..+|+.+..... | ...|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~lSiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QLSIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-ccceee
Confidence 5566665 55445555 8999988877642 23466677788888766433 4 337999
Q ss_pred EEEeCCCCeEEEEeC
Q 028802 129 LALSHDRKFLGSISH 143 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~ 143 (203)
+++.++|..++..-.
T Consensus 168 La~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQY 182 (305)
T ss_pred EEecCCCcEEEEEec
Confidence 999999876655443
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.42 E-value=4.5e-05 Score=59.40 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=94.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
.+..+++++.++.|..+|..+|+.+............+. .++..+++++.++.++.+|..+. +.+-.... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDG-KELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCC-cEeeeecc--Cceee
Confidence 356788888899999999999998877654332222222 25678888888999999998754 43333322 22222
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+...-.+..++.++.++.|+.+|..+|+.+..+..... .+ .+.... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 22111345677788899999999999998877654421 11 111121 2 4677777889999999988754
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.4e-05 Score=65.39 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++++-|+..|.|++++..... .+...|... ...|.++++|+.||.+.|..+.+. .....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 5788999999999999976543 333344332 568999999999999999988654 3333333 3456777
Q ss_pred E-EeeC-----CCEEEEEcCCCcEEEEEccC-Cceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~-----~~~l~~~~~dg~v~v~d~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ++|+ .+.+++|+..| +.++.-+- |.... .+... .++|.++.| .|+++|.+..+| |+|||+.+...-
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcEEEEecCCC-cEEEecccccee
Confidence 7 7886 67889999988 77776332 11111 23333 348999999 577898888665 799999887654
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
..
T Consensus 193 ~~ 194 (846)
T KOG2066|consen 193 TN 194 (846)
T ss_pred ec
Confidence 33
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1.3e-06 Score=70.81 Aligned_cols=134 Identities=11% Similarity=0.105 Sum_probs=94.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|+.. .+++++-|..+..||+++.. ++.....-......++|+-....+...+....|.+||++....++..+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 35777654 67889999999999998753 34444333455677899864444555566788999999988888888988
Q ss_pred CCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 79 LSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 79 ~~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
|...+..+ |. .....+.+++.||+|+.||.............+..+|+-..+.|-|
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 88888888 63 3556788999999999999764333222222334466666666633
No 311
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=3.7e-05 Score=60.76 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=80.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.++|+|++++++ .+|...|+.....+... .+.-....|.+.+ .+++-...+.|.++.-- .......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~-~~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNF-KNEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETT-EE-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcC-ccccceEEcC--
Confidence 4689999999885 45888888854443322 1233457888844 46666668889997322 1223233442
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+..+|. |.+|...+.+ .|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++...
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 334555655 7777776555 7999999999999988754 58999999999999888744 778877543
No 312
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.38 E-value=2.6e-05 Score=65.12 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=96.0
Q ss_pred CCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccc-EEEEEEee-----CCCEEEEecCCCeEEEEEcCCcccccee--e-
Q 028802 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDR--F- 76 (203)
Q Consensus 7 ~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~- 76 (203)
.++|+.- .....|+-.|+..|+.+.....+... |..++-.. .....++|-.+..+..||.+..+..+.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999888876543 55544221 1234566677888999999865422211 1
Q ss_pred -ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 77 -VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 -~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ......|+.+....+|++|+.+|.|++||--..+....+.+- +.+|.+|..+.||+||++.| +..|.++++
T Consensus 573 ~Y~-~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYS-SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccc-cCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11 344566666666678999999999999994332333445554 34999999999999987766 557777775
No 313
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.34 E-value=2.6e-05 Score=67.00 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=95.8
Q ss_pred CcccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~ 71 (203)
|+|-.||+++|+.+- -..++||+-. |.+..+.+.-.+--.+++|-|.|+++++... ...|.+|.-+ +.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468899999988753 2579999955 6655555543444457899999999998765 3456666643 33
Q ss_pred cceeeec---CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeeeccCCCcceEEEEEeCCC-CeEEEEeCC
Q 028802 72 CSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDR-KFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 144 (203)
....|.- .....+..+ |++++..|+....+. |++|-..+..- .+.+.......+..+.|+|.. ..|...+.+
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 2223322 034568888 999999999977655 99998876532 233332222245558999965 446666665
Q ss_pred CcEEEEe
Q 028802 145 SMLKLWD 151 (203)
Q Consensus 145 ~~i~iwd 151 (203)
+.+..++
T Consensus 371 g~~~~~~ 377 (928)
T PF04762_consen 371 GQYEIYD 377 (928)
T ss_pred CcEEEEE
Confidence 7665554
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=8.4e-06 Score=59.93 Aligned_cols=118 Identities=10% Similarity=0.166 Sum_probs=78.6
Q ss_pred CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--ecCCC-----CceeEE-EeeC-CCEEEEEcCCCcEEE
Q 028802 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSP-----NSVDAL-LKLD-EDRVITGSENGLISL 106 (203)
Q Consensus 36 ~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~-----~~v~~~-~~~~-~~~l~~~~~dg~v~v 106 (203)
|...|.++.+..|...++++. +-.|.+|.+.........+ +. +. ..|++. |+|. ...+...+..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 556678888988888777654 6789999886443332222 22 22 245666 8884 567777888999999
Q ss_pred EEccCCc------eeeeeccC---------CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 107 VGILPNR------IIQPIAEH---------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~------~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++... .+...... .-..|..+.|+++|+++++-.. -+++|||++...
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998321 11111100 0126888999999999998765 479999987654
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.32 E-value=0.00038 Score=50.94 Aligned_cols=146 Identities=15% Similarity=0.141 Sum_probs=89.6
Q ss_pred ccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CcccEEEEEEeeCCCEEEEecCC--------CeEEEEEcC
Q 028802 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~d--------~~i~v~d~~ 67 (203)
++. +++ .|+.+.. +.+.++|..+++....... .....+.+++.|+|++.++.... |.+..++..
T Consensus 46 ~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 344 454 4444444 4456669888755433321 34678899999999977765443 456666654
Q ss_pred CccccceeeecCCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCce-------eeeeccCCCcceEEEEEeCCCCeE
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRI-------IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~dg~v~v~d~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
+. +..+.. .......+ |+|+++.|+ +-+..+.|..|++..... ...+.... ...-.+++..+|+..
T Consensus 124 --~~-~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GK-VTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLW 198 (246)
T ss_dssp --SE-EEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EE
T ss_pred --Ce-EEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEE
Confidence 23 222332 34445677 899998776 456678899999863221 11122221 136789999999988
Q ss_pred EEEeCCCcEEEEeCCC
Q 028802 139 GSISHDSMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (203)
++....+.|.+++...
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8877889999999873
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.8e-05 Score=62.27 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=92.6
Q ss_pred ccccCCEEEEEc----------CCCeEEEEEcCCCeE-EEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028802 3 FAADAMKLLGTS----------GDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~----------~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~ 68 (203)
|-.+|.+|+.-. .-..+.|+.++.... +..+ .....|...+|-|.|..+++-+. ..++.+|-+..
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 556677776531 112344555544322 2222 23567889999999988776543 46788898863
Q ss_pred ccc---cceeeecCCCCceeEE-EeeCCCEEEEEc---CCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEE
Q 028802 69 FKD---CSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
... .+..+. ......+ |+|.|.+++.+. ..|.+.+||+.-..+.. ....|. ..+.+.|.|.|+|+++
T Consensus 480 ~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 480 NIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVT 554 (698)
T ss_pred CCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEE
Confidence 222 222332 2344566 899999988764 57889999987422221 223342 5678899999999998
Q ss_pred EeC------CCcEEEEeCCCcc
Q 028802 141 ISH------DSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~------d~~i~iwd~~~~~ 156 (203)
++. |.--++|++....
T Consensus 555 ~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred eeehhhhccccceEEEEeecHH
Confidence 874 4456888877654
No 317
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=1.4e-05 Score=64.85 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=93.4
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....++.|+....++++|+.||.++|..+.+.. ..-+++.+ |...|..+ |+.....+.++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 4568899999999999999999999999775321 12345678 89999988 99889999999999
Q ss_pred CcEEEEEccCCceeeeec-cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 102 GLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 102 g~v~v~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.|.||-+-.|.-...+. ....+-|.+|+|+.+|+.++....||.|.|=.++..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 999999998776543332 222346899999999999999999998876655543
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.00031 Score=50.80 Aligned_cols=136 Identities=14% Similarity=0.071 Sum_probs=92.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
.+++.|+..+.+.-.|..+|+++..-.. ..+|.+-+.- -|.+++.|...|.+++.++.+ +.....+.....-.+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 3567788889999999999988765432 3445544433 467899999999999999986 444444443123334444
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
..+++..|.+++.|+..+..|.++..++...+.... -..+-++.|-...|..+...|.+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceE
Confidence 789999999999999999999999888877665522 23344566633334444444444
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.25 E-value=1.9e-05 Score=58.09 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=103.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCc-----ccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSE-----EELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~-----~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.|+.|.+.++++ .|-.|.+|++.-. -.+..++.|. .-|++..|+|.. +.+..++..|.|++-|++....
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 3566677777775 4577899988642 1223334432 347788899854 5677788899999999984321
Q ss_pred cce---e------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCC-----------
Q 028802 72 CSD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~----------- 123 (203)
+.. . +.. -...|..+ |++.|++|++-.. -+|++||.+. ..++.++..|..
T Consensus 257 cdn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred ccCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 111 0 111 22456667 8999999987655 4799999875 456777654421
Q ss_pred cce---EEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 124 YPI---ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 124 ~~i---~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+| ..+.|+.|...+++|+.....-+|-+.+....
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~ 372 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFK 372 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccccCCCC
Confidence 123 45789999999999999999888886655443
No 320
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.6e-06 Score=66.36 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=70.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|.-..+|++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.|++|-.||+|++.|+............
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999999888 778888887777777 9999999999999999999999999865443332333
Q ss_pred CCCceeEE-Ee
Q 028802 80 SPNSVDAL-LK 89 (203)
Q Consensus 80 ~~~~v~~~-~~ 89 (203)
....+.++ |.
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 45567766 54
No 321
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.7e-06 Score=66.99 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=88.8
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc------cceeeecCCCCceeEE-EeeCCCEEEEEcCCC
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg 102 (203)
+..+.+|...|..++-..+.+.+++++.|.++++|.++..+. +..+++. |..+|..+ |-.+-+++++ -||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee--ccC
Confidence 456678888888888777888999999999999999975432 3345667 88999999 8777777655 467
Q ss_pred cEEEEEccCCceeeeecc-CCCcceEEEEEeCC--CCeEEEE-eCCCcEEEEeCCCcc
Q 028802 103 LISLVGILPNRIIQPIAE-HSEYPIESLALSHD--RKFLGSI-SHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~ 156 (203)
.|++||.--++++..+.. .....+..+..-|+ ...++.+ +...+++++|.+.+.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 899999887877764422 21224444444443 3444444 578899999998775
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00045 Score=54.01 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce--
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~-- 74 (203)
++++|+++.++++.. ++++.+.|..++..+........+ ..++++|+|..+++.. .++.+.++|.... ....
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899988776654 689999999988887776544444 8899999999777665 6889999997532 2221
Q ss_pred ---eeecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEe-CCC
Q 028802 75 ---RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDS 145 (203)
Q Consensus 75 ---~~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~d~ 145 (203)
.+.. ... ...+ ++|+|.+++..... +.+...|..++..... ...... ....+..+|+|.++.+.. ..+
T Consensus 199 ~~~~~~~-~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 199 VGSLVGV-GTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred ccccccc-CCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 1221 222 3344 79999987776654 5899999888776655 333322 356789999999987774 457
Q ss_pred cEEEEeCCCccc
Q 028802 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.+.+.|..+...
T Consensus 276 ~V~vid~~~~~v 287 (381)
T COG3391 276 TVSVIDGATDRV 287 (381)
T ss_pred eEEEEeCCCCce
Confidence 888888877543
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=9.3e-05 Score=61.17 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=98.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-EEEEEEeeCCCEEEEecCCC-----eEEEEEcCCc-----c
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~-----~ 70 (203)
.|++.+..++.|+.+|.|.+.+-. -+.+..++.+... |..+-...+..+|++.+.|. .+++|++... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478889999999999999888733 2344666666555 44444334446777766653 5899999632 1
Q ss_pred ccc---eeee-c--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 71 DCS---DRFV-G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~---~~~~-~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.++ ..+. . ..+.++.++ .+.+-+.+++|-.+|.|..+.-. .......+......+|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 0 023455666 68888999999999999888532 111112222222348999999999887555
Q ss_pred EeCCCcEEEEeCCCcc
Q 028802 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
..+-..|.+|.+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556688999887444
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=6.5e-05 Score=62.28 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
++|+|..-.|+.|-..|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799988888999999999999988877777778899999999999999999999999999999765
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.14 E-value=0.00041 Score=54.45 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.++.+..+|..+|+.+....... ...+. ..+..|+.++.++.+..+|..+....+..-.. .......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CCCcccC
Confidence 4566777788999999999998776654221 11222 24667778888999999998754332221111 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE-EEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+..++.++.+|.|+++|..+|+.+........ .+.+ ..+ .+..|+.++.+|.|+.++.
T Consensus 331 p~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1356788899999999999999998877654322 2322 222 2457888899999998865
No 326
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00011 Score=57.96 Aligned_cols=145 Identities=13% Similarity=0.180 Sum_probs=96.8
Q ss_pred cCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-------EEEEecCCCeEEEEEcCCccc-cceee
Q 028802 6 DAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (203)
Q Consensus 6 ~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~~~~d~~i~v~d~~~~~~-~~~~~ 76 (203)
+.++| ..+.....|+-.|+..|+.+.....+.. |.-+.+.|+.. .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 3455557788999999999888777655 66677777542 223455678899999885443 22222
Q ss_pred ec--C-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ + ......|.......+|++|+.+|.|++||--..+....+++- +.+|..|..+.+|.+|+..+ +..|.+-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22 0 233455555556678999999999999996322334445665 44899999999999987665 5566666653
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.13 E-value=0.00054 Score=43.11 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=69.3
Q ss_pred EEEEEEee---CC-CEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 40 LTSVVLMK---NG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 i~~l~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
|++|++.. +| +.|++|+.|..|++|+-. ..+..+.. ...+.++..-.+..++.+..+|+|-+|+-. .-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeCc--cee
Confidence 56666654 32 689999999999999843 56666664 667777755455789999999999999853 333
Q ss_pred eeeccCCCcceEEEEEeC---CC-CeEEEEeCCCcEEE
Q 028802 116 QPIAEHSEYPIESLALSH---DR-KFLGSISHDSMLKL 149 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~i 149 (203)
..+... ..+.++++.. || ..|++|-.+|.|-+
T Consensus 75 WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 2456665443 33 36888888888753
No 328
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.06 E-value=5.4e-05 Score=59.02 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=82.7
Q ss_pred cccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC---CeEEEEEcCCccccceee
Q 028802 2 TFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~ 76 (203)
+|+|.++.+++. ...-.+.+++++.+ +...+. ...=..+.|+|.++++++++.+ |.+.+||......+...+
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 689988876554 46788999999876 433332 3444567899999999987764 789999986433344355
Q ss_pred ecCCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 77 VGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
.+ .+.-.|=|+|++.++.+... |..|.|||+... ... ..+.+.|.|.+++..+.+
T Consensus 358 ~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~f--------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 358 NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KVF--------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc-hhh--------hhhhccccCCcccceeec
Confidence 54 22222239999999988753 677899997532 221 234455655555544443
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=3.7e-05 Score=62.07 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=82.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----eeee
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----DRFV 77 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~ 77 (203)
++..+++++.|+.-|.|++|+-..+.... ...+....+..+..+++..+++.|+..|.|.++-+......- ..+.
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 45678899999999999999977765432 222344556667788888899999999999999886532221 1122
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
..|...|+++ |++++..+++|...|.|.+.-+.+
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2267789999 999999999999999998877655
No 330
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=6e-05 Score=61.78 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=76.4
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc-ceeeec
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~-~~~~~~ 78 (203)
++|.|...|+|.|+|+.++.....+-.|...|.++.|.....++-.+. .-+.+.+-|++++-.. .+.+.+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 578899999999999999988888889999999999986655443222 1235667788753211 111222
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
....+|..+ .+..+.+++..-.+..+-+||+++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 145678888 899999999999999999999854
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=8.5e-05 Score=60.11 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=81.5
Q ss_pred ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCce-
Q 028802 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRI- 114 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~- 114 (203)
..|.--++...+.+++.|+.-|.+++|.-.. +.....-.. ....+.+. .++...+++.|+..|.|.++.+..+.+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNE-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCc-hhhhccccc-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3444445566789999999999999998753 333222121 12223333 689999999999999999998875422
Q ss_pred --eeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 115 --IQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 --~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...-..+. ...|++++|++++..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11112221 34899999999999999999999999988887
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.99 E-value=0.00013 Score=60.84 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.|+-...+..+|+.+.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++ .+.++.+.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 44566676667788899988776655544333454443 3678999999999999999974 578899999 9888765
Q ss_pred EEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028802 87 LLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 87 ~~~~~~~~l~~~~~---------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
+ +-.|++|++++. |..|.|||++..+.+..+..+.+ ..-+.|+|.= ..+++++..|...+-|
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeecc
Confidence 4 778899998864 55689999998888777766643 2345677743 4566666677777777
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.97 E-value=0.00029 Score=54.46 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=58.9
Q ss_pred cccCCEEEEEc---------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 4 AADAMKLLGTS---------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 4 sp~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|++++.... ...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeE
Confidence 78999887742 246789999999866443333 56788899999999998875 578999987532 112
Q ss_pred eeecCC-----------------CCceeEE-EeeCCCEEEEEc
Q 028802 75 RFVGLS-----------------PNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 75 ~~~~~~-----------------~~~v~~~-~~~~~~~l~~~~ 99 (203)
.++.-. -..-..+ |+|++++|+...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 221100 1123456 899999888654
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.95 E-value=4e-05 Score=37.77 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.8
Q ss_pred ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+++..+..|.. .|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556666644 899999999999999999999999996
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.94 E-value=4e-05 Score=37.78 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
+....+..|...|.++.|.+.+..+++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667888999999999999999999999999995
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.93 E-value=0.0014 Score=51.42 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=89.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-cEE------EEE--EeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT------SVV--LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~------~l~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.+..+++++.++.|.-+|..+|+.+........ .+. .+. ..-.+..++.++.++.++.+|..+....+ ..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W-~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW-QT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc-cc
Confidence 356777888889999999999998877653221 000 000 01135677788889999999987644433 33
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----EEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
.. . ..+.+- .- .+..++.++.++.|+.+|..+|+.+........ .+ .+... .+..++.++.++.+..+
T Consensus 147 ~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 147 KV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred cC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 32 1 222221 11 245677788899999999999999877754311 10 11111 12346667778888888
Q ss_pred eCCCccc
Q 028802 151 DLDDILK 157 (203)
Q Consensus 151 d~~~~~~ 157 (203)
|..++..
T Consensus 221 d~~~G~~ 227 (394)
T PRK11138 221 LMEQGQL 227 (394)
T ss_pred EccCChh
Confidence 8877654
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0001 Score=59.02 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=72.0
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
...+..+.|+|.-..++++..+|.+.++-+. ..+ +-.+.- +..+++ ++ |.|||+.|++|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457788999999999999999999988876 333 334443 444555 78 999999999999999999999999887
Q ss_pred eeeeccCCCcceEEEEEeC
Q 028802 115 IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~ 133 (203)
+.........+|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663222233688888863
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0025 Score=53.14 Aligned_cols=149 Identities=14% Similarity=0.197 Sum_probs=94.2
Q ss_pred CEEEEEcCCC-----eEEEEEcCC------CeEE---Eee--c--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028802 8 MKLLGTSGDG-----TLSVCNLRK------NTVQ---TRS--E--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 8 ~~l~~~~~d~-----~i~v~d~~~------~~~~---~~~--~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
++|++.+.|+ .|+||++.. +.++ ..+ . ....++.+++.+.+-..+++|-.+|.|.++.-...
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677766554 589999863 2233 111 1 23578899999999889999999999998843211
Q ss_pred --cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 70 --KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 70 --~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
......+......+|+.+ +..++..++.+..-..|.+|.+....+. ..+..+ +....|.++++....+++++ +.
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-Cc
Confidence 111111111146789999 7666666455555567889998743333 335444 55788888887655455444 46
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|.+|+.....+.
T Consensus 236 ~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 236 FLYFYDSDGRGPC 248 (933)
T ss_pred eEEEEcCCCccee
Confidence 7999998765543
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.004 Score=48.75 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=100.4
Q ss_pred cccccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~ 77 (203)
++++.++.++. ...++.|.+.|..+......+.... ....++++|++..++++.. ++.+.+.|..+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 46677775544 4456899999987776666554322 5678999999988877665 678888887653 3444443
Q ss_pred cCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceee-----eeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
. ...+ ..+ ++|+|..++... .++.|.+.|........ .+... . ....+.++|+|.++...... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 3 3344 445 899999777666 67889999976654442 12222 1 34678999999976655533 588
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9e-05 Score=56.29 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=71.9
Q ss_pred EEEEEcCCccccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-e
Q 028802 61 VLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-F 137 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 137 (203)
+++.+..+. ...+.+.. +...|..+ |+|..+ ++..++.+..|.|.|+++......+..+ . .+++++|.-+.. +
T Consensus 175 v~~l~~~~f-kssq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCc-chhhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcce
Confidence 444444322 23344555 67778999 899877 6778899999999999999888888888 4 799999998764 5
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 028802 138 LGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|-..|.|.|||++..+.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eEEeccCceEEEEEccCCCc
Confidence 67777999999999987653
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=3.7e-06 Score=67.11 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=91.1
Q ss_pred Ccccc-cCCEEEEEc----CCCeEEEEEcCCC--eE--EEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 1 MTFAA-DAMKLLGTS----GDGTLSVCNLRKN--TV--QTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp-~~~~l~~~~----~d~~i~v~d~~~~--~~--~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
++|++ |.+.||+|- .|..+.|||+.++ .+ ...+.+ ......+++|..+.+++++|.....+.++|++...
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 35555 455666663 3567999999865 11 111211 23345588898888888898888899999998432
Q ss_pred ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEE-ccC-CceeeeeccCCC---cceEEEEEeCCCC-eEEEEe
Q 028802 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d-~~~-~~~~~~~~~~~~---~~i~~~~~~~~~~-~l~~~~ 142 (203)
.....+ ....+..+ ..| .++++++- .+|.|.+|| .+. ..++.++...+. ..+..++|.|... .+++..
T Consensus 188 ~~~~sv---nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 188 DSVSSV---NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred hhhhhh---hhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 222222 22234444 566 55566554 499999999 332 223333322211 1488999999654 445555
Q ss_pred -CCCcEEEEeCCC
Q 028802 143 -HDSMLKLWDLDD 154 (203)
Q Consensus 143 -~d~~i~iwd~~~ 154 (203)
..++|+.+|+..
T Consensus 264 RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 264 RDSITIRLYDICV 276 (783)
T ss_pred cCcceEEEecccc
Confidence 567899998754
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.0031 Score=54.49 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC----Cc--------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG----YF-------- 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~----~~-------- 69 (203)
.|..+.+.++.+...|.|.+-|..+... .....-...|.+++|+||+..++..+..+++.+-.-. ..
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 3455677788888889999988776533 2222335679999999999999888877777664321 00
Q ss_pred ----------cccceeeec---------------------CCCCceeEE-EeeCCCEEEEE-----cCCCcEEEEEccCC
Q 028802 70 ----------KDCSDRFVG---------------------LSPNSVDAL-LKLDEDRVITG-----SENGLISLVGILPN 112 (203)
Q Consensus 70 ----------~~~~~~~~~---------------------~~~~~v~~~-~~~~~~~l~~~-----~~dg~v~v~d~~~~ 112 (203)
+..-..|.+ .+... ..+ |--+|.++++. ...+.|+|||.+ |
T Consensus 154 ~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeecchhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 010111211 00111 235 88899998873 233789999966 4
Q ss_pred ceeeeeccCCCcceEEEEEeCCCCeEEEEe---CCCcEEEEeCCCcccC
Q 028802 113 RIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDILKG 158 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~ 158 (203)
..- .......+-=.+++|-|.|..+++.. .|+.|.+|.-.....+
T Consensus 232 ~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 232 ALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred hhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 322 22111111335789999999998755 4567999986544443
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0001 Score=61.17 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=80.4
Q ss_pred EEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028802 42 SVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 42 ~l~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~ 116 (203)
-+.|+|...++++++. .|.|-||-= + +++-..+. .+-.++++ |+|..-.++.|-.-|.+.+|...+.+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-t-GEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-T-GEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-C-CCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3578998888887653 578888742 2 34333222 23334556 89998888899899999999987766555
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....| ..+|..+.|+|+|..++++..-|.+.+|...
T Consensus 96 v~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55556 4589999999999999999999999999876
No 344
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.77 E-value=0.0014 Score=54.07 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=80.4
Q ss_pred cccccCCEEEEEc------CC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC------------CeE
Q 028802 2 TFAADAMKLLGTS------GD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (203)
Q Consensus 2 ~~sp~~~~l~~~~------~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------------~~i 61 (203)
++||+|+.+++.. .| ..|++++... .......+ .......|+|+|..|++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789999887664 23 3566666532 22222222 237788999998877766432 233
Q ss_pred EEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEE---EEccCCce-e---eeeccCCCcceEEEEEeC
Q 028802 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRI-I---QPIAEHSEYPIESLALSH 133 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v---~d~~~~~~-~---~~~~~~~~~~i~~~~~~~ 133 (203)
.+.++.. +.... . ....|..+ |+|||..++... ++.|++ -....|.. + ..+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3333321 11111 2 34568888 999999998866 467776 33334431 1 012111122357899999
Q ss_pred CCCeEEEEeCCCc--EEEEeCCCc
Q 028802 134 DRKFLGSISHDSM--LKLWDLDDI 155 (203)
Q Consensus 134 ~~~~l~~~~~d~~--i~iwd~~~~ 155 (203)
++..+ ++..++. +...++...
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCc
Confidence 98855 4443333 444445433
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.011 Score=45.23 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=85.0
Q ss_pred CCEEEEEcC----------CCeEEEEEcCCC----eEEEee--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~----------d~~i~v~d~~~~----~~~~~~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
..+|++|+. .|.|.++.+... ..+..+ ....++|++++-- .+. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 356776642 288999999873 122211 2336778888755 444 44443 4889999997543
Q ss_pred ccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-Cceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 71 DCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.....-.......+.++ ...+++|++|.....|.++.... ...+..+ +......++++.+-+++..++.+..+|.|.
T Consensus 119 ~l~~~~~~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 12222111012233343 44577999999888888875543 2323222 222223688888887777888999999999
Q ss_pred EEeCC
Q 028802 149 LWDLD 153 (203)
Q Consensus 149 iwd~~ 153 (203)
++...
T Consensus 198 ~l~~~ 202 (321)
T PF03178_consen 198 VLRYN 202 (321)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99884
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0046 Score=46.75 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred ccccCCEEEEEcC-----------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCC-c
Q 028802 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY-F 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~-~ 69 (203)
..|+|.+.+.... -|.|+.++. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566665554433 133444443 45555555555566678999999988877665 47888887752 1
Q ss_pred ccc-----ceeeecCCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEE
Q 028802 70 KDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 70 ~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 141 (203)
... ...+.. ..+..-.+ ...+|.+.+++...| .|.+|+.. |+.+..+..+.. .+++++|- |+.+.|+..
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEE
Confidence 111 111111 22333333 566778776555554 89999988 999888887743 67888885 455555444
Q ss_pred e
Q 028802 142 S 142 (203)
Q Consensus 142 ~ 142 (203)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 3
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.63 E-value=0.0081 Score=47.52 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=83.5
Q ss_pred cccccCCEEEEE-cCC----CeEEEEEcCCCeEEEee-cCCcccEEEEEEeeCCCEEEEecCC-----------CeEEEE
Q 028802 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLY 64 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d----~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~v~ 64 (203)
++||+|++||.+ +.. ..|+++|+.+++.+... .. .....+.|.++++.|+....+ ..|+.|
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 579999998765 222 46999999999765422 22 122349999998887765432 237777
Q ss_pred EcCCcccc-ceeeecCCCCc--eeEE-EeeCCCEEEEEcC---C-CcEEEEEccCC----ceeeeeccCCCcceEEEEEe
Q 028802 65 SWGYFKDC-SDRFVGLSPNS--VDAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 65 d~~~~~~~-~~~~~~~~~~~--v~~~-~~~~~~~l~~~~~---d-g~v~v~d~~~~----~~~~~~~~~~~~~i~~~~~~ 132 (203)
.+.+.... ...+.. .... ...+ .++++++++.... + ..+++.++..+ .....+..... .+....-+
T Consensus 208 ~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~ 285 (414)
T PF02897_consen 208 KLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDH 285 (414)
T ss_dssp ETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEE
T ss_pred ECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEc
Confidence 77643322 223333 3333 2344 6899999876443 2 35788888764 22233333223 33333323
Q ss_pred CCCCeEEEEe---CCCcEEEEeCCCccc
Q 028802 133 HDRKFLGSIS---HDSMLKLWDLDDILK 157 (203)
Q Consensus 133 ~~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (203)
..+.+++... ..+.|...++.....
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred cCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 3444444332 345677777766553
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.00011 Score=61.24 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=91.6
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-C-cEEE
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-G-LISL 106 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g-~v~v 106 (203)
...+..+....++++|+-+.++|++|+..|.|++|++.+ +........ |..+++.+ -+.+|..+++.+.- . ...+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 345566778899999999999999999999999999975 677777888 99999988 67788877765543 2 4668
Q ss_pred EEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 107 VGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 107 ~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|++.+ +.....+. .-.++.|+..-+.-+.|+.-....+||+.|+.+-+
T Consensus 1172 W~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred hccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 98764 33444443 34667888765555566655678999998886543
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.02 Score=45.32 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=35.7
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
.|.||+.. |+++..+.-..+.|.++.|+.+ ..|++...+|.+++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 48888865 4455666554588999999875 455566689999999984
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.58 E-value=0.017 Score=42.99 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=87.9
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--------
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------- 74 (203)
...++.|+.|+.+| |++++.... ....... ...|..+...|.-+.|++-+ |+.++++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678899998888 999998332 2222222 23499999999877777665 49999999864221110
Q ss_pred ------eeecCCCCceeEEEe----eCCCEEEEEcCCCcEEEEEccCC-----ceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 75 ------RFVGLSPNSVDALLK----LDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 75 ------~~~~~~~~~v~~~~~----~~~~~l~~~~~dg~v~v~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.+.. ...+.. |. +.+...++......|.+|..... +....+... + .+.+++|. ++.|+
T Consensus 80 ~~~~~~~~~~--~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLPE--TKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccc--cCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEE
Confidence 1111 111111 23 34444445555558888876542 455666655 3 68899998 55677
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028802 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.. +...+.|+.++...
T Consensus 153 v~~~-~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 153 VGTS-KGFYLIDLNTGSPS 170 (275)
T ss_pred EEeC-CceEEEecCCCCce
Confidence 6664 45888898866543
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.56 E-value=0.0024 Score=55.09 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=70.7
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCc--c
Q 028802 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF--K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~--~ 70 (203)
|.|--||+++|+. .....|+|||-. |.+-..-......-.+++|-|.|..+++... ++.|.+|.-+.. +
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 4577899998883 233789999976 4433333333444567999999999887543 557888875311 1
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEE---EcCCCcEEEEEccCC
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVIT---GSENGLISLVGILPN 112 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~---~~~dg~v~v~d~~~~ 112 (203)
...-.+.. ....+..+ |+.++..|+. ......|++|-+.+.
T Consensus 280 ~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11112222 33447788 9999988887 444555999987654
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.54 E-value=0.0075 Score=38.05 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
.-+| +.|++|+.|..|++|.-. ..+..+.. ...|++|.-... ..++.+..+|+|-+|+-. ...++ ++. ..
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR-iKS--K~ 81 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR-IKS--KN 81 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-ecc--CC
Confidence 3344 579999999999999843 56666654 456777776654 678999999999999853 24443 333 33
Q ss_pred ceeEE--EeeCC---CEEEEEcCCCcEE
Q 028802 83 SVDAL--LKLDE---DRVITGSENGLIS 105 (203)
Q Consensus 83 ~v~~~--~~~~~---~~l~~~~~dg~v~ 105 (203)
.+.++ +..++ +-|++|-.+|.|-
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45556 33332 3578888888763
No 353
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.53 E-value=0.007 Score=44.01 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
|.+++.|...|.+++.+..+|...+.+.....-=......+++..+..++.|++.+..|..+. .++-..+. .+.+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskc--gG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKC--GGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEeccc--CCceec
Confidence 567888999999999999999777766543221122345678999999999999999998753 33333332 222221
Q ss_pred -E-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 87 -L-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 87 -~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
. ..|-...|+.+...|.|.-....+
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCC
Confidence 1 355334455555555554444443
No 354
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00078 Score=52.17 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=101.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCC--C-eEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec-CC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~--~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-~~ 80 (203)
..+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++.++.+.+. |..+++||+.+. ..+..+.. .-
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 356889999999999998543 2 445566778888999999999999999777 999999999753 33222221 01
Q ss_pred CCceeEEEeeCC---CEEEEEcCCCcEEEEEccCCc-ee-eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDALLKLDE---DRVITGSENGLISLVGILPNR-II-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~---~~l~~~~~dg~v~v~d~~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++.+..+.++.. ...++.-.++.+.++|-.... +. ..-..|. .+|..+-+++-+..+++....|.|.-|....
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~-sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF-SPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc-CceEEEEeeccccceeeccccceeEeecCCC
Confidence 222222222221 222333457899999976433 22 2233453 4899999999999999999999999999875
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.0063 Score=50.25 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=61.1
Q ss_pred ccEEEEEEeeCCCEEEEec------CCC--eEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-------
Q 028802 38 EELTSVVLMKNGRKVVCGS------QSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN------- 101 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~------~d~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d------- 101 (203)
..+.+.+++|+|+.++... .+. .|.+++. .+.. ..+.. .. ..... |+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 3577889999999887655 243 4444454 2333 33332 22 35555 89998877776432
Q ss_pred -----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 102 -----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 102 -----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
+.+++.++..+.... .. ...|..+.|+|||..|+... ++.|++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333433332222 11 22699999999999988765 467766
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.43 E-value=0.026 Score=45.81 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=87.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----EE-EEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LT-SVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC 72 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----i~-~l~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~ 72 (203)
..++.++.++.|+.+|..+|+.+......... +. ...+. +..++.++ .++.+..+|..+....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67788888999999999999998877543221 11 11222 23454443 3577888888754333
Q ss_pred ceeeecCCC-------------------CceeE-E-EeeCCCEEEEEcCCC------------------cEEEEEccCCc
Q 028802 73 SDRFVGLSP-------------------NSVDA-L-LKLDEDRVITGSENG------------------LISLVGILPNR 113 (203)
Q Consensus 73 ~~~~~~~~~-------------------~~v~~-~-~~~~~~~l~~~~~dg------------------~v~v~d~~~~~ 113 (203)
.+ +..... ..++. . +.+.+..++.++.++ .|.-+|+.+|+
T Consensus 189 W~-~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WR-FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eE-eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 32 221000 11111 1 344567778877665 68899999999
Q ss_pred eeeeeccCCCcceE------EEEEe----CCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028802 114 IIQPIAEHSEYPIE------SLALS----HDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 114 ~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..+..... ... ...+. -++. .++.++.+|.+..+|.++++..
T Consensus 268 ~~W~~~~~~~-~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 268 VKWFYQTTPH-DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEeeCCCC-CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 9877643211 110 11111 1333 5677788999999999998754
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.38 E-value=0.029 Score=44.78 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------c--ccceee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--------~--~~~~~~ 76 (203)
|..|+..+. +.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.+++.... + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 555655544 48999999999999998753 48999999999999988755 5777766421 0 012222
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.. ....|.+. |.-+ .++..+.. .|+. +-.|..- ++..- +.+++-+.+.|..+.+.....++.+..+.+...
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 21 13345444 5433 44444444 4543 3334322 22221 226777788887788888888888888876543
No 358
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.019 Score=42.43 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=88.3
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE------------
Q 028802 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL------------ 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v------------ 63 (203)
.|||||.+|+..-. -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+.. -|..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 48999999887643 378999999854 456777788878889999999999987643 2322
Q ss_pred --------EEcCCccccceeeec---CCCCceeEE-EeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCC---
Q 028802 64 --------YSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE--- 123 (203)
Q Consensus 64 --------~d~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~dg~-----v~v~d~~~~~~~~~~~~~~~--- 123 (203)
.|..+ +..+++..- .+...++.+ ..++|..++-+-..|. -.|=-...++++.-+....+
T Consensus 198 sMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 22111 122211110 022345555 4556655544433221 11111223444433332211
Q ss_pred ---cceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccC
Q 028802 124 ---YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 124 ---~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 158 (203)
.-|-+|+.+.+..+++..+ ..+...+||..++...
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 1366777776655655444 6667899999998754
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.34 E-value=0.02 Score=46.44 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=88.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc------cEE--EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~i~--~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+..++.++.++.|+-+|..+++.+........ .+. .+... ++..++.++.++.|+.+|..+. +.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG-~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG-KQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC-CEeeeecC
Confidence 45677777889999999999988876653222 110 11111 2267888888999999999764 44333332
Q ss_pred CCCC--ceeEE-Eee--CCCEEEEEc---------CCCcEEEEEccCCceeeeeccCCC-------------------cc
Q 028802 79 LSPN--SVDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (203)
Q Consensus 79 ~~~~--~v~~~-~~~--~~~~l~~~~---------~dg~v~v~d~~~~~~~~~~~~~~~-------------------~~ 125 (203)
... .-..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 111 00011 111 124455553 367889999999998877644211 01
Q ss_pred e-EEEEEeCCCCeEEEEeCCC------------------cEEEEeCCCcccC
Q 028802 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (203)
Q Consensus 126 i-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (203)
+ ...++.+.+..++.++.++ .|.-+|+.+++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1245555566777776554 6888898888754
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.32 E-value=0.035 Score=43.62 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEee--cC------CcccEEEEEEee-----CC---CEEEEecCCCeEEEEEcCC-
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~------~~~~i~~l~~~~-----~~---~~l~~~~~d~~i~v~d~~~- 68 (203)
|-.++|+|..+|.+.|.|++.+..+..- .. ....++++.|.. |+ -.|++|+..|.+.+|.+..
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 5568999999999999999988776542 11 234677888873 22 3678889999999998742
Q ss_pred c-ccc----ceeeecCCCCceeEE--EeeC-C-------------------CEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 69 F-KDC----SDRFVGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 69 ~-~~~----~~~~~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
. +.. ...... +...+..+ ++.+ | +.++..+.+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 1 111 111112 34555544 3222 1 23455555677999998877665444322
Q ss_pred CCcceEEEEEe-----CCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ~~~~i~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+..+.+- ..+..|++...+|.|++|.+...++.
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1133444453 35567888889999999999887654
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.31 E-value=0.027 Score=43.04 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCCc
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~ 83 (203)
+.+|+++.. +.|.+|++...+ ....-. .....+.++.. .++++++|.....+.++.+......+..+.. .....
T Consensus 98 ~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 334555443 789999998776 433222 12335555554 4669999998888888866432232333322 02344
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC-------Cc--eeeeeccCCCcceEEE---EEeC--CCC------eEEEEe
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------NR--IIQPIAEHSEYPIESL---ALSH--DRK------FLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-------~~--~~~~~~~~~~~~i~~~---~~~~--~~~------~l~~~~ 142 (203)
+.++ +-+++..++.+..+|.|.++.... +. ......-|.+..|+++ .+.| .+. .++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5666 554667999999999999988752 22 2222222333367777 5555 222 377888
Q ss_pred CCCcEEEE
Q 028802 143 HDSMLKLW 150 (203)
Q Consensus 143 ~d~~i~iw 150 (203)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89998844
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.30 E-value=0.024 Score=43.95 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=72.1
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+.+.++.......|...|+.+. +....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 47889977665544 457888899998776555443333335667788888876655678888888753 32222332
Q ss_pred CCCCceeEE-E--eeCCCEEEEEc----------------------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
....+... | +.++..++-.- -...|...|+.+|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 44555544221 1234666788888776666554 3 788999999
Q ss_pred CCCeEEEEe
Q 028802 134 DRKFLGSIS 142 (203)
Q Consensus 134 ~~~~l~~~~ 142 (203)
....+++-|
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 776655544
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=6.9e-05 Score=60.16 Aligned_cols=140 Identities=12% Similarity=0.211 Sum_probs=91.5
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEee-CCCEEEEecC----CCeEEEEEcCCcc-ccce--eee
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYFK-DCSD--RFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~----d~~i~v~d~~~~~-~~~~--~~~ 77 (203)
-.+++|..+|.|.+-.++...- .....++..+.++++|++ |.+.|+.|-. +..+.+||+...- .+.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 3567888889999988875422 234456778899999998 5667776643 5679999996421 1111 111
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEe
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd 151 (203)
+.......++ |-.+.+++++|...+.+.++|++... ....+.. . .+..+...| .+.|+++.. |+.|.+||
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 1011223344 56778888899999999999998322 1222221 2 356677788 677877665 99999999
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.28 E-value=0.04 Score=40.43 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=78.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC------eEEEeec-----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-- 68 (203)
++..++.++++.-+++.+.++.+... .....+. .+...+-.++|.|.++.|+++-...-..+|.+..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 34455666666666889999988321 1112221 2345689999999888888877766667776653
Q ss_pred ccccceee-----e--cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------cceEEEEE
Q 028802 69 FKDCSDRF-----V--GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLAL 131 (203)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~--------~~i~~~~~ 131 (203)
....+... . ......+..+ ++|. +++++.+.....|..+| ..|+++..+....+ .....|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0023346677 7774 56677777888899999 66777665543321 25788999
Q ss_pred eCCCCeEEEEeCCCcEEEE
Q 028802 132 SHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (203)
.++|+..+++ .-+..++|
T Consensus 230 d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -TT--EEEEE-TTTEEEEE
T ss_pred CCCCCEEEEc-CCceEEEe
Confidence 9999655544 45555554
No 365
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.25 E-value=0.024 Score=46.84 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-eeeecCCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEcc--
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL-- 110 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~~-~--~~~~~~l~~~~~dg~v~v~d~~-- 110 (203)
...+.-+.-+.-++..++-+....+.|||.+...... ..+ . ....|..+ | .|++..+++.+-.+.|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3344444445545555555556789999997432111 122 3 46788888 6 7899999999999999988632
Q ss_pred ----C---Cceeee--eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 111 ----P---NRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 111 ----~---~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ..++.. +..++..+|.+..|.++|..++.++ ..+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 112222 2344434799999999997766553 56777763
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0025 Score=54.47 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC--c
Q 028802 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~--~ 124 (203)
.+..++.|+..|.+...|+...-.+...-.. ..++|+++ |+.+|..++.|-.+|.|.+||+..++++..+..+.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888899988888632111122222 46789999 899999999999999999999999998888876632 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+..+.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3344455556667777777675 5543
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.22 E-value=0.047 Score=40.05 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=87.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-----
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----- 73 (203)
|+|+|+.+ ++++....+.|..++. +|+.+..+... ..-.-.|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 57899866 5566777888988886 46777766533 3457788888888777777678999999884322211
Q ss_pred eeee--c--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---Cceeee-----ec---cCCCcceEEEEEeCCCC-
Q 028802 74 DRFV--G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQP-----IA---EHSEYPIESLALSHDRK- 136 (203)
Q Consensus 74 ~~~~--~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~-----~~---~~~~~~i~~~~~~~~~~- 136 (203)
..+. . .+...+-.+ |+|.++.++++.......+|.+.. ...+.. +. .. ...+.+++++|...
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTTE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCCe
Confidence 1111 1 023346777 899888888888877777777653 211111 11 11 12578899999654
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028802 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+++....++.|..+|..
T Consensus 185 lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 185 LLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEEETTTTEEEEE-TT
T ss_pred EEEEECCCCeEEEECCC
Confidence 44555577778887743
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.053 Score=40.27 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=98.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----- 74 (203)
++|+|+.+.|++......-.|+-...|+.+.++.-. -.-...|.+..+++++++--.++.+.++.+......+.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999999988888777777777788888877531 12244577887888888877788888887754322111
Q ss_pred ----eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-ee--eeeccCCC------cceEEEEEeCCC-CeEE
Q 028802 75 ----RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II--QPIAEHSE------YPIESLALSHDR-KFLG 139 (203)
Q Consensus 75 ----~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~--~~~~~~~~------~~i~~~~~~~~~-~~l~ 139 (203)
.... .....-.+ |.|....++.+-+..-+.||....+. .+ .....+.. ..|.++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1111 13345566 89999999998888888877765322 11 11111110 147778888754 4555
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
-+..++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5557777777776554
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0018 Score=55.23 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=68.1
Q ss_pred CEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 8 MKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
..+++|+..|.+-..|..++ .....-....++|++++|+.+|..+..|-.+|.|.+||+.. +..++.+.. +..+...
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccce
Confidence 35677777888887776653 11112223467899999999999999999999999999975 467777766 6666555
Q ss_pred E----EeeCCCEEEEEcCCCc
Q 028802 87 L----LKLDEDRVITGSENGL 103 (203)
Q Consensus 87 ~----~~~~~~~l~~~~~dg~ 103 (203)
+ +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 5 3556667788877776
No 370
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.18 E-value=0.021 Score=46.26 Aligned_cols=113 Identities=10% Similarity=0.044 Sum_probs=67.9
Q ss_pred ccEEEEEEeeC----CCEEEEecCCCeEEEEEcCCccc----cceeeec--CCC---CceeEEEeeCCCEEEEEcCCCcE
Q 028802 38 EELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKD----CSDRFVG--LSP---NSVDALLKLDEDRVITGSENGLI 104 (203)
Q Consensus 38 ~~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~--~~~---~~v~~~~~~~~~~l~~~~~dg~v 104 (203)
..|..+.|.|- ...|+.......|.||.+..... .+..-.. ... -+-.|+|+|....+++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 32444445667899999853211 1111010 001 12345599998888876665444
Q ss_pred EEEEccCC--ceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 105 SLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 105 ~v~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+++++.. +...-+..+ + -|+|.+|.+||+.|+++- ..=+-+|||-
T Consensus 137 V~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 45666543 333444444 3 799999999998876554 3345688873
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.16 E-value=0.067 Score=40.80 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=90.1
Q ss_pred cccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCcc-c------EEEEEEeeCCCEEEEecC--CCeEE
Q 028802 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-E------LTSVVLMKNGRKVVCGSQ--SGTVL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~-~------i~~l~~~~~~~~l~~~~~--d~~i~ 62 (203)
..||+++.++++. +.-.|.+||..+-.+...+.-+.. + ...++++.+++++++... ...|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 5789999888753 234689999999877665543322 1 123567778887776443 45788
Q ss_pred EEEcCCccccceeeecCCCCceeEEE-eeCCCEEEEEcCCCcEEEEEcc-CCceeeee----ccCCCcceEEEEEeCCCC
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-PNRIIQPI----AEHSEYPIESLALSHDRK 136 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~----~~~~~~~i~~~~~~~~~~ 136 (203)
|.|+.. ++.+..+.. + .+..++ ++ ...+.+.|.||.+..+.+. .|+..... ....+..+..-++...+.
T Consensus 122 VVDl~~-~kvv~ei~~--P-GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT--P-GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEETTT-TEEEEEEEG--T-SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEECCC-CceeeeecC--C-CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 888864 455555543 2 223333 22 2468888999999988887 45544221 111121223445566666
Q ss_pred eEEEEeCCCcEEEEeCCCcc
Q 028802 137 FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++..+.+|.|+--|+....
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSS
T ss_pred eEEEEecCCEEEEEeccCCc
Confidence 77778889999888876654
No 372
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.12 E-value=0.064 Score=41.87 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=72.5
Q ss_pred CcccccCCEEEEEc-----------CCC-eEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEE
Q 028802 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~-~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~ 64 (203)
|+|.++|+++++-. ..+ .|.+++-.. +.. ...+.........+++.+++ |+++.....+++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEe
Confidence 57889998777643 223 676665432 221 22333333456789998888 4444444333343
Q ss_pred EcCCcc----c---cceeeecCC----CCceeEE-EeeCCCEEEEEcC-------------------CCcEEEEEccCCc
Q 028802 65 SWGYFK----D---CSDRFVGLS----PNSVDAL-LKLDEDRVITGSE-------------------NGLISLVGILPNR 113 (203)
Q Consensus 65 d~~~~~----~---~~~~~~~~~----~~~v~~~-~~~~~~~l~~~~~-------------------dg~v~v~d~~~~~ 113 (203)
|....+ . .+..+.. . ......+ +.|+|.+.++.+. .|.|..++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 543211 1 1111211 1 1224456 7899877664441 1345556655443
Q ss_pred eeeeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 114 IIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
. ..+..... ....++|+|+|+.+++-..
T Consensus 176 ~-e~~a~G~r-np~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 176 L-RVVAHGFQ-NPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred E-EEEecCcC-CCccceECCCCCEEEEccC
Confidence 3 23322212 4678999999988776543
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.053 Score=40.19 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred CcccccCC-EEEEEcCCCe-EEEEEcCCCeEEEeecCCccc--EEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccc
Q 028802 1 MTFAADAM-KLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~ 71 (203)
|+|+|-.. -++.+-+-|+ ..++|..+.+...++...+.+ .-.=.|+|||.+|+..-.| |.|=|||.+..-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 35566443 3455544444 457777765544444322211 1123589999998875443 7899999985444
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeeccCC---CcceEEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAEHS---EYPIESL 129 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------dg~v~v~d~~~~~~~~~~~~~~---~~~i~~~ 129 (203)
.+..+.. |.-....+ +.+||+.++.+.. .-.+.+.|..+|..+.+..... ...|..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 5556666 65555666 8999999987753 1134455555666554433221 1268888
Q ss_pred EEeCCCCeEEEEeC
Q 028802 130 ALSHDRKFLGSISH 143 (203)
Q Consensus 130 ~~~~~~~~l~~~~~ 143 (203)
...+||+.++.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 88888877665543
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.07 E-value=0.046 Score=41.66 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----------CCeEEEEEcCCccccceeeecCC--CC--
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVGLS--PN-- 82 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~~--~~-- 82 (203)
+.++|+|..+++.+..+... ..-.+..+|+++.+++++. .-.|.+||..+.. +...+.--. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchhee
Confidence 57999999999988877642 2334678999998886432 3468999987532 222111101 11
Q ss_pred --ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 83 --SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 83 --~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+ ++.+++++++... .-.|.|.|+..++.+..+... + +..+--+++ +-+.+.|.||.+....+..
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G--C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G--CWLIYPSGN-RGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S--EEEEEEEET-TEEEEEETTSCEEEEEETS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C--EEEEEecCC-CceEEEecCCceEEEEECC
Confidence 11222 5788888887654 456889999988888877665 3 333322223 4577888899998888863
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.07 E-value=0.08 Score=40.01 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=71.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----eec
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~ 78 (203)
-+++|++++++..-..+.-|+.-...-...-.....+|..|.|.|++.+.+.+ ..|.|++=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46889988888776666677754322222223345789999999998776654 7888888762211222111 111
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
....+..+ |.+++...++|+ .|.+ ++....|+.-+..+.-. ...++.|.|.+..+-+ ..+.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 22335666 777766666554 4544 34445565544443311 1257888887664444 44568887655
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.0042 Score=44.11 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEE-EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-Cc
Q 028802 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTS-VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~ 83 (203)
+..+++|+.+|.|++|+.... ............|.+ +.-..++.+..+++.+|.|+.|.+.. .+.+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 356888899999999987632 111111111222222 22233556788899999999999863 333333333 33 22
Q ss_pred eeEE-EeeCCCEEEEE--cCCCcEEEEEc
Q 028802 84 VDAL-LKLDEDRVITG--SENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~dg~v~v~d~ 109 (203)
...+ ....+..+.++ +.+..++.|++
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcch
Confidence 2222 33344444444 44444444544
No 377
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.042 Score=43.93 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=90.4
Q ss_pred ccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC--------CEEEEecCCCeEEEEEcCCcccccee
Q 028802 5 ADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~--------~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
.+..+|+ .|..-..++-.|+..|+.+.....+..- -+.+.|.. +.|+-.+ +..|.-.|.+..+..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceee
Confidence 3444443 3455567888888888888777766554 46666642 3344334 444555566544433322
Q ss_pred eec--C-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 76 FVG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~--~-~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
... + ......+.......+|+.++..|.|++||.-.-+....+++... +|..+..+.+|.++++.|. ..|.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 221 0 12334444455667999999999999999543334444555534 8999999999999877664 57777776
Q ss_pred CC
Q 028802 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
+-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 53
No 378
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.92 E-value=0.054 Score=42.64 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=71.4
Q ss_pred cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc------------------------------------------ceee
Q 028802 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC------------------------------------------SDRF 76 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------------------------------------------~~~~ 76 (203)
.|..+.|.+...-|+++...|.|.+|.+...... ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677888888888888888888888766421100 0001
Q ss_pred ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee--cc-----CCCcceEEEEEeC-----CC---CeEEEE
Q 028802 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI--AE-----HSEYPIESLALSH-----DR---KFLGSI 141 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~--~~-----~~~~~i~~~~~~~-----~~---~~l~~~ 141 (203)
.. ..++|+++-..+=.+++.|..+|.+.|.|++....+..- .. .....++++.|.. |+ -.+++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 12 345677775556678999999999999999866655442 22 1122577787763 33 357788
Q ss_pred eCCCcEEEEeCC
Q 028802 142 SHDSMLKLWDLD 153 (203)
Q Consensus 142 ~~d~~i~iwd~~ 153 (203)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999884
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.89 E-value=0.11 Score=38.43 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=80.2
Q ss_pred cccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE-cCCccccceeee
Q 028802 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d-~~~~~~~~~~~~ 77 (203)
++|++++.++... ....|+++..... ....+. ...+....|++++...+....+....++. ..........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998876655 3345666554332 222222 23678889999987776666566666653 221111111222
Q ss_pred cCCC-CceeEE-EeeCCCEEEEEc---CCCcEEEEEcc---CC------ceeeeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 78 GLSP-NSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 78 ~~~~-~~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~---~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
.... ..|..+ ++|+|..++... .++.|.+--+. .+ ..+...... ...+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCC
Confidence 1011 278888 999999988776 24667766543 22 111222121 226899999999988776653
No 380
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.88 E-value=0.069 Score=41.41 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred CcccccCCEEEEE--cCC---CeEEEEEcCCCeEEEeec-CCcc---cEEEEEEe-eCCC-EEEEecCCCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSE-FSEE---ELTSVVLM-KNGR-KVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d---~~i~v~d~~~~~~~~~~~-~~~~---~i~~l~~~-~~~~-~l~~~~~d~~i~v~d~~~~ 69 (203)
+.|+++++.|+.. .++ ..+.++|..++.....+. .... ....+.+. +++. +|.....+|.-++|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3588888844333 222 346677776654322221 1111 12244444 5554 4445556776666655444
Q ss_pred cccceeeecCCCCceeEE--EeeCCCEEEEE-cC----CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVITG-SE----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~-~~----dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
+.....++. ....|..+ ++++++.|+.. .. ...|+..++..+.....+..... ....+.|+|++++++..+
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 455556666 66677666 68887776644 33 23465566663445556665533 225899999999987544
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.88 E-value=0.015 Score=49.23 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=66.5
Q ss_pred EEEEEcCCCeEEEEEcCCC--eEEEe-e--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc
Q 028802 9 KLLGTSGDGTLSVCNLRKN--TVQTR-S--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~--~~~~~-~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
..+.|-.++.|+.||.+-. +++.. . ........|++-+.+| +||+|+.+|.|++||-- +......+.+ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC-CCCC
Confidence 3456667788999998753 23321 1 1223456777766655 78999999999999953 3344445666 6789
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
|..+ .+.+|++|++.|.. .|.+++.
T Consensus 621 I~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 9999 89999999877655 4556654
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.74 E-value=0.078 Score=43.81 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=72.2
Q ss_pred cCCEEEEEcCCC-----eEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCCC-------------------
Q 028802 6 DAMKLLGTSGDG-----TLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (203)
Q Consensus 6 ~~~~l~~~~~d~-----~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~------------------- 59 (203)
+++..+.|+.++ ++..||..++.- +..+.........+ .-++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 455666776643 477888876532 22222211111112 23677777776542
Q ss_pred ----eEEEEEcCCccccceeeecCCCCce-eEEEeeCCCEEEEEcCC------CcEEEEEccC-Ccee--eeeccCCCcc
Q 028802 60 ----TVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSEN------GLISLVGILP-NRII--QPIAEHSEYP 125 (203)
Q Consensus 60 ----~i~v~d~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d------g~v~v~d~~~-~~~~--~~~~~~~~~~ 125 (203)
.+..||..+ ..+..+........ .++..-+++..+.|+.+ ..+..||..+ .+-. ..+... ...
T Consensus 429 ~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVN--NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LSA 505 (557)
T ss_pred cccceEEEECCCC--CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-ccc
Confidence 466777653 22322221001111 11234466666777653 2367899887 4432 223222 111
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028802 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
...++ -++...++|+.++ .+..||..+.+
T Consensus 506 ~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 22222 2777888888887 66777766543
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.73 E-value=0.008 Score=31.78 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=27.3
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.|..++|+|....||.+..+|.|.+|.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 69999999999999999999999999983
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.73 E-value=0.0074 Score=31.90 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.2
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
...|..++|+|...+|+.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.66 E-value=0.15 Score=36.88 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=59.1
Q ss_pred EEEEEEeeCCCEEEEe-cCCCeEEEEEc--CCcc----ccceeeecC--CCCc-eeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028802 40 LTSVVLMKNGRKVVCG-SQSGTVLLYSW--GYFK----DCSDRFVGL--SPNS-VDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 40 i~~l~~~~~~~~l~~~-~~d~~i~v~d~--~~~~----~~~~~~~~~--~~~~-v~~~-~~~~~~~l~~~~~dg~v~v~d 108 (203)
-+.++|+.+.+.+... +.+-.|.-||. .+.. ..+-.+... .... .-.+ ...+|++.++.-+.++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3568898877766554 44667766774 3211 111111110 0000 1111 355778888888889999999
Q ss_pred ccCCceeeeeccCCCcceEEEEEeC
Q 028802 109 ILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
+.+|+.+.++...+. .|++++|--
T Consensus 240 p~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCC-ceEEEEecC
Confidence 999999999988865 899999954
No 386
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.59 E-value=0.1 Score=41.36 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=66.7
Q ss_pred EEEEEeeCCCEEEEe-cCC----CeEEEEEcCCccccce-eeecCCCCceeEE-EeeCCCEEEEEcCCC-----------
Q 028802 41 TSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENG----------- 102 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~-~~d----~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~dg----------- 102 (203)
....++|++++|+.+ +.. ..++++|+.+. ..+. .+.. . ....+ |.+++..|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~--~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN--P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE--E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc--c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 357789999988864 333 36999999864 3333 2222 1 12226 899988877665322
Q ss_pred cEEEEEccCCcee--eeeccCCCcc-eEEEEEeCCCCeEEEEe---CC-CcEEEEeCCCc
Q 028802 103 LISLVGILPNRII--QPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (203)
Q Consensus 103 ~v~v~d~~~~~~~--~~~~~~~~~~-i~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (203)
.|+.|.+.+.... ..+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3777887765322 3344432222 56788999999976543 23 45788888764
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.57 E-value=0.26 Score=40.51 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 91 ~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+.+++.+..+|.++.+|.++|+.+..++......-.=+.|.-+|+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 55677778889999999999999998887653211112344456643
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.27 Score=37.41 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=77.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee---
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--- 77 (203)
.|.++...| .+--..+.|.-|+..++... .+.. ...+.++..-..+..|+++... +.++++... ..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~-~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEHG--VRLLDPDTG-GKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEccc--cEEEeccCC-ceeEEecccc
Confidence 356666644 34345677888877655332 2222 2334444444444455554432 455555332 2212111
Q ss_pred -cCCCCceeEE-EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-C
Q 028802 78 -GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-H 143 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~-----------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 143 (203)
.........+ ..|+|.+.+.-.. -|.|+.++. .+..+..+..+-. .-..++||||++.|+.+. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCC
Confidence 1011233444 6788776664333 134555554 4556555555322 456799999998877665 4
Q ss_pred CCcEEEEeCCC
Q 028802 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|.-|++..
T Consensus 184 ~~~i~r~~~d~ 194 (307)
T COG3386 184 ANRIHRYDLDP 194 (307)
T ss_pred CCeEEEEecCc
Confidence 57888888863
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.25 Score=40.93 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCcccc
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~ 72 (203)
++..++.|+.+ ..+..||..++.-. ..+....... ....-++...+.|+.++ .+..||..+ ..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~--~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGD--DK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEEEECCEEEEECCcCCCCCCceEEEEECCC--Ce
Confidence 34455666543 34777887765321 1111111111 12233677777777653 478888763 23
Q ss_pred ceeeecCCCCcee--EEEeeCCCEEEEEcCCC-----------------------cEEEEEccCCceeeeeccCCCcceE
Q 028802 73 SDRFVGLSPNSVD--ALLKLDEDRVITGSENG-----------------------LISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 73 ~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg-----------------------~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
+..+.. -..+.. ++..-++...+.|+.++ .+..||+.+.+-...-..... ...
T Consensus 379 W~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~ 456 (557)
T PHA02713 379 WKMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIR 456 (557)
T ss_pred EEECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-ccc
Confidence 333222 111111 12344677777776542 477788776543221111111 111
Q ss_pred EEEEeCCCCeEEEEeCC------CcEEEEeCCC
Q 028802 128 SLALSHDRKFLGSISHD------SMLKLWDLDD 154 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (203)
..+..-+++..+.|+.+ ..+..||..+
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 11223356666666643 2356777765
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.019 Score=49.79 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=84.8
Q ss_pred ccccCCEEEEE--cCCCeEEEEEcCCCe--------EEE---eecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGT--SGDGTLSVCNLRKNT--------VQT---RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~--~~d~~i~v~d~~~~~--------~~~---~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~ 68 (203)
.++|+...++. +.+-.|.+||+.+-. ++. ..........++.|+|.-. ..+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 45565544333 334478899987421 111 1111223456778888432 345667789999888764
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC---CCcceEEEEEeCCCCeEEEEe
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 142 (203)
....+..+. .....+++ |+|.|+.++.|-..|++.-|-.. .+....+.+. ....|.+|+|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 444444444 35567777 99999999999999999887643 3333333222 124799999988877776543
No 391
>PHA03098 kelch-like protein; Provisional
Probab=96.27 E-value=0.29 Score=40.24 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~ 72 (203)
+++.++.|+.+ ..+..||..+++-. ..+....... ++ ..-++..++.|+.. ..+..||..+ ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t--~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNT--NK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCC--Ce
Confidence 45556666654 34677887665322 1111111111 12 22356666776632 4578888763 22
Q ss_pred ceeeecCCCCc--eeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeee--eccCCCcceEEEEEeCCCCeEEE
Q 028802 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------g~v~v~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
+..+.. -+.+ -.++...++..++.|+.. ..+.+||+.+++-... +... ......+. .++..++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEE
Confidence 322221 1111 112234456666666542 2378899877643321 1111 11111222 26666677
Q ss_pred EeCC-----CcEEEEeCCCc
Q 028802 141 ISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 141 ~~~d-----~~i~iwd~~~~ 155 (203)
|+.+ ..+.+||..+.
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 7643 46788887654
No 392
>PRK10115 protease 2; Provisional
Probab=96.24 E-value=0.6 Score=39.77 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=61.2
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~ 70 (203)
.|||+|++|+.+.. ...|++.++.++..+........ ..++|.+|++.|+.+..+ ..|+.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 58999998877632 34688999988753322111111 458999999877665432 367777776532
Q ss_pred ccc-eeeecCCCCcee-EEE-eeCCCEEEEEcC---CCcEEEEEc
Q 028802 71 DCS-DRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (203)
Q Consensus 71 ~~~-~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---dg~v~v~d~ 109 (203)
... ..+.. ...... ..+ +.++.+++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 122 22332 222233 224 447777665443 456888884
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.05 E-value=0.39 Score=35.44 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred cEEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE-ccCCc
Q 028802 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d-~~~~~ 113 (203)
.+.+.++++++..++... ....++++... +.....+.+ ..+... |++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998876655 33455555433 222222232 255555 899988877777666666663 23332
Q ss_pred ee-eeeccCCCc-ceEEEEEeCCCCeEEEEe---CCCcEEEEeC
Q 028802 114 II-QPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDL 152 (203)
Q Consensus 114 ~~-~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~d~~i~iwd~ 152 (203)
.. ..+...... .|..+.++|||..++... .++.|.+=-+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 22 122222111 699999999999877555 3566776654
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.02 E-value=0.22 Score=39.44 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE--EeeCC----------------C-
Q 028802 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDE----------------D- 93 (203)
Q Consensus 33 ~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~----------------~- 93 (203)
+......+.+|..+|.+++.++...-|+|.++|+.. +..++.++++....+.-+ ..... .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 334445688999999999999988889999999974 567777776222222212 11111 1
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
+++.+-..|.|-||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2334556788888888888777666544
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.98 E-value=0.43 Score=37.80 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeC--CCEEEEe-cCCCeEEEEEcCCcc-----ccc------------
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFK-----DCS------------ 73 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~--~~~l~~~-~~d~~i~v~d~~~~~-----~~~------------ 73 (203)
-.+|.+||+.+.+.++++.-.. .....+.|..+ ..+=+++ .-.++|..|--...+ +.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4679999999999999887543 24556777654 3443333 334444444321111 001
Q ss_pred ----eeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCC---ceeeeec-cC-------C-------CcceEEE
Q 028802 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPN---RIIQPIA-EH-------S-------EYPIESL 129 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~---~~~~~~~-~~-------~-------~~~i~~~ 129 (203)
+.+.. -..-++.+ .|.|.++|++++. .|.|+.||+..- +...++. +. . .....-+
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 01111 13446777 7999999998775 899999999752 2222211 10 0 0023456
Q ss_pred EEeCCCCeEEEEe
Q 028802 130 ALSHDRKFLGSIS 142 (203)
Q Consensus 130 ~~~~~~~~l~~~~ 142 (203)
.+|-||+.|+...
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888998876543
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.97 E-value=0.11 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=48.9
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeee-------cc------CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPI-------AE------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-------~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+...+.++++.+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4667889999999999999999987654221 11 1123688999999998887765 57888888643
No 397
>PHA03098 kelch-like protein; Provisional
Probab=95.97 E-value=0.56 Score=38.58 Aligned_cols=143 Identities=9% Similarity=-0.014 Sum_probs=66.8
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEEEe--ecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028802 7 AMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~v~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~ 73 (203)
+..++.|+.+ ..+..||..++.-... +....... ++ ..-++..++.|+.+ ..+..||..+ ..+
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GV-TVFNNRIYVIGGIYNSISLNTVESWKPGE--SKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eE-EEECCEEEEEeCCCCCEecceEEEEcCCC--Cce
Confidence 3445555543 2467788776543221 11111111 12 22356677777764 3467777653 223
Q ss_pred eeeecCCCCc--eeEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-
Q 028802 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
..... -..+ -.++...++...+.|+.. ..+..||+.+.+-...-.......-.++ ...++..++.|+.+
T Consensus 371 ~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 32221 1111 111233466677777632 3578899876543221111111011122 22355566666532
Q ss_pred -------CcEEEEeCCCc
Q 028802 145 -------SMLKLWDLDDI 155 (203)
Q Consensus 145 -------~~i~iwd~~~~ 155 (203)
..+.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCCCcccceEEEecCCCC
Confidence 13788887654
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.95 E-value=0.037 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=25.1
Q ss_pred ceEEEEEeCCCC---eEEEEeCCCcEEEEeCCC
Q 028802 125 PIESLALSHDRK---FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~ 154 (203)
+|.++.|+|+.. +|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 689999998554 777777889999999995
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.44 Score=35.60 Aligned_cols=119 Identities=9% Similarity=0.034 Sum_probs=75.3
Q ss_pred cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 34 ~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
.+....+.++.|+|+.+.|++........|+-. +.+..+.++.-..-...-.+ +-..+.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 444566999999999999888777666555533 45677776643122233344 5555666666666788888776644
Q ss_pred ceee-----eec----cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 113 RIIQ-----PIA----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 113 ~~~~-----~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..+. .+. .+.......++|.|....|..+-.-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2111 111 1112257789999998888887766667777765
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.88 E-value=0.48 Score=35.03 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=83.1
Q ss_pred ccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCcc-cEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028802 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++.. +..|+-- =..+...+||..+ -+.+..+.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~y 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKIGTFPY 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEEEEEE-
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEEEEEec
Confidence 445666666666544 799999999987655543221 11233333 3344433 3578999999875 355555543
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----cceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.=+.+ ..++..|+.+.....|+++|..+.+....+..... ..+..+.|. +|...|=.-....|...|..+
T Consensus 129 --~~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 129 --PGEGWGL-TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp --SSS--EE-EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred --CCcceEE-EcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC
Confidence 3334444 46777888877788899999888776665543311 134555664 454444444555666666666
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+...
T Consensus 205 G~V~ 208 (264)
T PF05096_consen 205 GKVV 208 (264)
T ss_dssp -BEE
T ss_pred CeEE
Confidence 6543
No 401
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.0012 Score=51.79 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=86.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|-|.+.-++.+..+..+..||-.. +....+. .......++|..++..+++ +-..+.+++||+... .-+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--ytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--YTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh--hHHHHhc-c
Confidence 3566666677777777777887443 3332222 2345667888888876554 455789999999743 2222322 2
Q ss_pred CCceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 81 PNSVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~-~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
...-.+ + |++.+..++.+...|.+.+|+..+.+.+...-.|.. +++++++.+.+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeee
Confidence 222222 3 889899999999999999999887665544433544 789999999875443
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.78 E-value=0.75 Score=38.26 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=76.8
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCcccEEEEEE-eeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 73 (203)
++...++|+.+ .++..||..+++-.. +..-..+-..... .-+|...++|+.+| ++..||..+ ..+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45566788877 357788887664221 1111111111222 23677888888886 477787653 333
Q ss_pred eeeecCCCCceeEE--EeeCCCEEEEEcCCC------cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~dg------~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..... ........ ..-+|.+.++|+.++ .+..||..++.-...-.......-..++ .-++...+.|+.|+
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG 486 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence 33322 11122222 355788888887543 4778888876543322222111111222 23566777777665
Q ss_pred c-----EEEEeCCCc
Q 028802 146 M-----LKLWDLDDI 155 (203)
Q Consensus 146 ~-----i~iwd~~~~ 155 (203)
. +..||..+.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 566776554
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.78 E-value=0.69 Score=36.14 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=61.3
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecC---CC-eEEEEEcCCccccceeeecCCCCceeE-E--Ee
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDA-L--LK 89 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~---d~-~i~v~d~~~~~~~~~~~~~~~~~~v~~-~--~~ 89 (203)
.|...|+.+|+....+. ....+..+.|+|.. ..|+.|-+ +. .-+||-++..+.....+.. +.....+ - |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 46666777776544443 35667788999854 45555443 22 2477877665555555544 3332222 2 79
Q ss_pred eCCCEEEEEcC-----CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 90 LDEDRVITGSE-----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 90 ~~~~~l~~~~~-----dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
|+|..|..-+. +..|.-+|+.+++........ +...+.-++||++++--+.|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCC
Confidence 99988776432 345777888887655433332 45566778899888754443
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.76 E-value=0.92 Score=37.37 Aligned_cols=150 Identities=16% Similarity=0.101 Sum_probs=86.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc----ccEEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeee
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~ 77 (203)
..++.++.++.|.-+|..+|+.+....... ..+.+.-.--++ .++++. .+|.|..+|..+.....+.-.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 467778889999999999999887664311 112111111133 444443 257888888865432222111
Q ss_pred c-----------------------------CCCCceeEE--EeeCCCEEEEEcCC-----C-----------cEEEEEcc
Q 028802 78 G-----------------------------LSPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGIL 110 (203)
Q Consensus 78 ~-----------------------------~~~~~v~~~--~~~~~~~l~~~~~d-----g-----------~v~v~d~~ 110 (203)
. .....++.. +.|...+++.+... + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 001123322 45556666665521 2 57778899
Q ss_pred CCceeeeeccCCC--------cceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028802 111 PNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 111 ~~~~~~~~~~~~~--------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|+....++.... ....-+.+..+|+ .++.+..+|.+++.|-++++..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9998877654221 1112223334666 5678889999999999998763
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.61 E-value=0.13 Score=37.12 Aligned_cols=72 Identities=29% Similarity=0.340 Sum_probs=50.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEee-------c-------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~-------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457888999999999999999987654321 1 2446688888888888777665 47788888752
Q ss_pred ccccceeee
Q 028802 69 FKDCSDRFV 77 (203)
Q Consensus 69 ~~~~~~~~~ 77 (203)
.++..+.
T Consensus 97 --~~W~~vs 103 (219)
T PF07569_consen 97 --GCWIRVS 103 (219)
T ss_pred --ceeEEec
Confidence 4444443
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.50 E-value=0.78 Score=34.81 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=57.1
Q ss_pred CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-CCc
Q 028802 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNR 113 (203)
Q Consensus 36 ~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-~~~ 113 (203)
....+..+.-+++|++++++.....+.-||-. ..............+..+ |.|++.+.+.+ ..|.|++=+.. ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34567888888999999998876666777743 233333332135678888 99998776655 78888877621 111
Q ss_pred eeee--ecc-CCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 114 IIQP--IAE-HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.... ... .....+..++|.+++...++++ .|.|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence 1111 111 1123588999999877777665 4443
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.49 E-value=0.98 Score=35.87 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=73.4
Q ss_pred ccCCEEEEEc--C----CCeEEEEEcCCCeEEEeecCCc---ccEEEEEEeeCCCEEEEecC------------------
Q 028802 5 ADAMKLLGTS--G----DGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKVVCGSQ------------------ 57 (203)
Q Consensus 5 p~~~~l~~~~--~----d~~i~v~d~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~------------------ 57 (203)
|+|+.++++- . -|-+.++|-.+-+.....+... .--..+-|.|..+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 6777777652 2 2457788877766665554322 23456778888888887643
Q ss_pred --CCeEEEEEcCCccccceeeecCCCC--ceeEE-E--eeCCCEEEEEc-CCCcEEEEEc-cCCc----eeeeeccC---
Q 028802 58 --SGTVLLYSWGYFKDCSDRFVGLSPN--SVDAL-L--KLDEDRVITGS-ENGLISLVGI-LPNR----IIQPIAEH--- 121 (203)
Q Consensus 58 --d~~i~v~d~~~~~~~~~~~~~~~~~--~v~~~-~--~~~~~~l~~~~-~dg~v~v~d~-~~~~----~~~~~~~~--- 121 (203)
..++.+||+.. .+.++++.- ... .+..+ | .|+..+-++++ ....|..|-- ..+. .+..+...
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 25899999974 566777654 322 23333 4 56655544443 3445555543 3332 11112110
Q ss_pred -----C--------CcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028802 122 -----S--------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 122 -----~--------~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
. ..-|+.|.+|.|.++|..++ ..|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 01378999999999998777 78999999997754
No 408
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.45 E-value=0.13 Score=40.77 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-Eee-cCCc----ccEE-EEEEeeCCCEEEEecCCCeEEEE-EcCCcccc--
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EFSE----EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-- 72 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~-~~~-~~~~----~~i~-~l~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~-- 72 (203)
..|+|+.|+.-+. .++.|+++.+.... .++ .... ..|+ .+..-..|..+.+++.||-|.-| |++..+..
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998877666 77888887653221 111 1111 1121 11122345667788888877766 65533221
Q ss_pred --ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 73 --SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 73 --~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
++.+.- ....+..+ -..+.+.+++-...|.+.++.....+.+..-+.. + .+..++++|.+.+|++-. .|.|++
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec-CCceEE
Confidence 122222 22334333 2334566777788888888765444443222222 3 567789999999988664 578999
Q ss_pred EeCCCcccCCC
Q 028802 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
+.+++..++-.
T Consensus 383 ~~l~Nr~Peis 393 (733)
T COG4590 383 AQLENRNPEIS 393 (733)
T ss_pred EEecCCCCCcc
Confidence 99998877643
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.21 Score=40.21 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=62.9
Q ss_pred EEEcCCCeEEEEEcCC-Ce-EEEeecCC----cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 11 LGTSGDGTLSVCNLRK-NT-VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~-~~-~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+.|-.++.|+-||.+- +. .+...+.| .....|.+-..+ -++++|+.+|.|++||- ........+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 3455678899999873 22 22222222 223455555444 47899999999999997 33444556777 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
..+ .+.+|++|+..|.. .+.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEeccc-EEEEEEE
Confidence 989 89999998776654 4555554
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.14 E-value=1.4 Score=35.78 Aligned_cols=139 Identities=10% Similarity=-0.106 Sum_probs=65.9
Q ss_pred cCCEEEEEcCC--CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCCC---eEEEEEcCCccccceeeec
Q 028802 6 DAMKLLGTSGD--GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d--~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~ 78 (203)
++...+.|+.+ ..+..|+..++.-. ..+..... ......-++...+.|+.++ .+..||..+ ..+.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCC--CEEEeCCC
Confidence 45555666643 35777887654322 12221111 1112233677777777543 466787653 23332221
Q ss_pred CCCCc--eeEEEeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCcceEEEEEeCCCCeEEEEeCC-----CcEEE
Q 028802 79 LSPNS--VDALLKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKL 149 (203)
Q Consensus 79 ~~~~~--v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i 149 (203)
-..+ -.++...++...+.|+ .+.+||..+++-.. .+... .... +++ .-+++..+.|+.+ ..+..
T Consensus 394 -m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 394 -TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred -CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC-cccc-EEE-EECCEEEEECCcCCCcccceEEE
Confidence 1111 1122344566666653 46788887654332 22111 1112 222 2366777777754 34666
Q ss_pred EeCCCc
Q 028802 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
||..+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 766543
No 411
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.99 E-value=0.64 Score=34.50 Aligned_cols=102 Identities=12% Similarity=0.217 Sum_probs=59.5
Q ss_pred eCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---------
Q 028802 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~--------- 116 (203)
..++.|+.|+.+| ++++++........ +. ....|..+ .-|+-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3578899998888 89999843223322 22 23347777 667666666554 4899999987543322
Q ss_pred ------eeccCCCcceEEEE--EeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 117 ------PIAEHSEYPIESLA--LSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ------~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+... . .+..++ -.+.+...+.....+.|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 11111 1 344444 1233444444444668999988663
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.88 E-value=0.18 Score=25.94 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=25.0
Q ss_pred cEEEEEEeeCC---CEEEEecCCCeEEEEEcCC
Q 028802 39 ELTSVVLMKNG---RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 39 ~i~~l~~~~~~---~~l~~~~~d~~i~v~d~~~ 68 (203)
.+.++.|+|.. .+|+.+-..+.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999844 4888888889999999984
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.85 E-value=1.2 Score=37.39 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=60.6
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEe--eCCCEEEEecCCCeEEEEEcC-----Ccc---ccceee--e
Q 028802 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSWG-----YFK---DCSDRF--V 77 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~--~~~~~l~~~~~d~~i~v~d~~-----~~~---~~~~~~--~ 77 (203)
++-+...++.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.+|--. +.. ..++.+ .
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 333344679999998876543222 346789999997 588888888888989888441 111 122222 2
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d 108 (203)
.....+|... |-++|.+++.+++ .+.|++
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 2022567777 8888877665543 467776
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.82 E-value=2.2 Score=36.60 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=48.2
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEcc----------CCce-e--ee-------eccCCCcceEEEEEeCC---CCeE
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGIL----------PNRI-I--QP-------IAEHSEYPIESLALSHD---RKFL 138 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~----------~~~~-~--~~-------~~~~~~~~i~~~~~~~~---~~~l 138 (203)
.|..+ ++|+|.+++..+..|.+ |..+. .|+. + .+ +..+....|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45666 79999999988887654 33332 1111 1 11 11122237889999996 5899
Q ss_pred EEEeCCCcEEEEeCCCc
Q 028802 139 GSISHDSMLKLWDLDDI 155 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~ 155 (203)
++-..|+.|++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999643
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.75 E-value=0.37 Score=41.00 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=48.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----------Ce--EE-Eee--------cCCcccEEEEEEeeC---CCEEEEec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NT--VQ-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~----------~~--~~-~~~--------~~~~~~i~~l~~~~~---~~~l~~~~ 56 (203)
|.+||.|.+|+..+..| |.|..+.. +. .. +++ ..+...|..+.|+|. +..|++-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999998888755 44444321 11 11 111 123457889999996 47888889
Q ss_pred CCCeEEEEEcCCcccccee
Q 028802 57 QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 57 ~d~~i~v~d~~~~~~~~~~ 75 (203)
.|+.+++||+.....+...
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444333
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.52 Score=41.53 Aligned_cols=116 Identities=8% Similarity=-0.074 Sum_probs=69.2
Q ss_pred ccEEEEEEeeCCCEEEEe--cCCCeEEEEEcCCccccc----eeeec-----CCCCceeEE-EeeCCCE-EEEEcCCCcE
Q 028802 38 EELTSVVLMKNGRKVVCG--SQSGTVLLYSWGYFKDCS----DRFVG-----LSPNSVDAL-LKLDEDR-VITGSENGLI 104 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~----~~~~~-----~~~~~v~~~-~~~~~~~-l~~~~~dg~v 104 (203)
.++..+...+|+...++. +.+-.|+.||+....... ..+.. .......++ |+|.-.. .+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356666677777655443 334489999997422111 11111 012223444 7765433 3445568888
Q ss_pred EEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 105 SLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 105 ~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|..+... .....+... ...++++|+|.|..++.|-..|++.-|...-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t--~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVT--NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhhcccCcc--cceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 87766432 222333332 26899999999999999999999988875443
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=1.9 Score=34.53 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=74.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe--EEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc---eeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT--VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---DRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~--~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~ 79 (203)
|.+.++.+.+.|.+.=|-+.... ..-.+ ....++|.++.|++|.+.|++--.+.+|.++......... ...+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 34444444445555556554321 11111 2346799999999999999999999999999884221111 11222
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
....|...+..+..-++.....| +-+|...+ .+.+.....+.- .|.-..|.++-+.++-
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILL 170 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEee
Confidence 23335555344446666666655 45555433 223333444433 6777888888776443
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.41 E-value=3 Score=36.48 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=83.2
Q ss_pred eEEEEEcCCCeEEEeecCC-c---ccEEEEEEeeC-CCEEEEecC----------CCeEEEEEcCCccccceeeec-CCC
Q 028802 18 TLSVCNLRKNTVQTRSEFS-E---EELTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSP 81 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~-~---~~i~~l~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~-~~~ 81 (203)
.++++|-.+-+.+...+.. . ..+.+..|..| +.++++|+. .|.|.+|.+.. ...++.+.. --.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3667776665544333221 1 23445557776 567776643 47888888764 233332221 024
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++.--+|++++. -...|++|+..+.+.+..-..+.. ++..+.+.-.|..+++|..-+.|.+...+..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 5566663335665544 455799999988867665555533 78888888899999999988887776655443
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.32 E-value=0.61 Score=36.99 Aligned_cols=76 Identities=9% Similarity=0.161 Sum_probs=52.5
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-----------------CeEE-EEeC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----------------KFLG-SISH 143 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~l~-~~~~ 143 (203)
.+.++ .+|.+.+.++...-|.|.++|+..+..+..+++..+..+.-+.....+ .+|+ -+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 35566 699999999988889999999999988888877654333222221111 1233 3446
Q ss_pred CCcEEEEeCCCcccC
Q 028802 144 DSMLKLWDLDDILKG 158 (203)
Q Consensus 144 d~~i~iwd~~~~~~~ 158 (203)
-|.|.||.++++..-
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 789999999887643
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.29 E-value=2.2 Score=34.00 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=84.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCcc-c---
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D--- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~~-~--- 71 (203)
+...|++|+..|.++||+...+. .+...+ -..+|..+..-. ....|++ -.-..+.+|.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999986432 222222 246787776542 2234444 445678888773211 1
Q ss_pred ----cceeeecCCCCc--eeEE----E-eeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 72 ----CSDRFVGLSPNS--VDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ----~~~~~~~~~~~~--v~~~----~-~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.+..+.. |.-. ...+ | ... ..+|.+-+.||.+.+|+-+.......+... - -...++|.+.-..++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1122222 2111 1111 3 223 457778889999999996543222222221 1 223467888888999
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+++.+..|..|.....
T Consensus 191 t~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 191 TASSSWTLECYKYQDL 206 (418)
T ss_pred EecCceeEEEecHHHh
Confidence 9998889999886544
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.28 E-value=2.7 Score=36.32 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc--------EEEEEEee----------------CCCEEEEecCCCeEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLMK----------------NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------i~~l~~~~----------------~~~~l~~~~~d~~i~ 62 (203)
+..|+.++.++.|.-.|..+|+.+..+...... ...+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457778888899999999999988877542210 12233221 234788888899999
Q ss_pred EEEcCCccccceeeecCCCCce-------------eEE-Eee--CCCEEEEEcC----------CCcEEEEEccCCceee
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------dg~v~v~d~~~~~~~~ 116 (203)
-.|..+. +.+..+.. .+.+ ..+ ..| .+..+++++. .|.|+-+|..+|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9998764 44433321 1110 011 112 2345555542 6889999999998876
Q ss_pred ee
Q 028802 117 PI 118 (203)
Q Consensus 117 ~~ 118 (203)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 65
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.16 E-value=0.17 Score=43.41 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=77.3
Q ss_pred CeEEEEEcC--CCeEE-----EeecCCcccEEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc---
Q 028802 17 GTLSVCNLR--KNTVQ-----TRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS--- 83 (203)
Q Consensus 17 ~~i~v~d~~--~~~~~-----~~~~~~~~~i~~l~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--- 83 (203)
|.+.||++. .|++. .........+.-+.|.| +.-++.++..++.+++..+.. .....+.+ |...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 678899875 34322 22222233444455554 555666677788888876643 22233333 4322
Q ss_pred -------eeEE--EeeCCCEEEEEcCCCcEEEEEcc-CC----ceeeeeccCCCcceEEEEEeCC-------C--CeEEE
Q 028802 84 -------VDAL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSEYPIESLALSHD-------R--KFLGS 140 (203)
Q Consensus 84 -------v~~~--~~~~~~~l~~~~~dg~v~v~d~~-~~----~~~~~~~~~~~~~i~~~~~~~~-------~--~~l~~ 140 (203)
+.-+ .+|||+.++.++.||.++.|.+. +| +++..+..|.+.+-.|.-++.. + .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 2222 59999999999999999998865 22 3444555554322222223221 2 22344
Q ss_pred Ee-CCCcEEEEeCCCccc
Q 028802 141 IS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~ 157 (203)
++ .++.+++|......+
T Consensus 310 ttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred cccCCcceeEeeccchhh
Confidence 44 567789998665544
No 423
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.15 E-value=0.35 Score=24.30 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.9
Q ss_pred ccCCEEEEEc-CCCeEEEEEcCCCeEEEeecC
Q 028802 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 5 p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~ 35 (203)
|++++|+++. .+++|.++|..++..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788776654 578999999988887777665
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.91 E-value=3.6 Score=35.05 Aligned_cols=141 Identities=10% Similarity=0.020 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeecC----------------CcccEEEEEEee--CCCEEEEecCCCeEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEF----------------SEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~----------------~~~~i~~l~~~~--~~~~l~~~~~d~~i~ 62 (203)
.++|+++. .+.|.||++..-.. ...+.. -.-.|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58999999864211 111100 011244443332 345788889999999
Q ss_pred EEEcCCccc-------------------cceeeecCCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCcee----e
Q 028802 63 LYSWGYFKD-------------------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRII----Q 116 (203)
Q Consensus 63 v~d~~~~~~-------------------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~dg~v~v~d~~~~~~~----~ 116 (203)
+|.+..--. +...+. .....+.+ ++ ...++||++++...|.||-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 997632100 011111 23456777 66 77888888888888888765432111 1
Q ss_pred eeccCCCcceEEEEEeCCC---C---eEEEEeCCCcEEEEeC
Q 028802 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDL 152 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 152 (203)
... + ...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 2 2268889987643 2 6778888999988887
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=93.87 E-value=2.4 Score=32.78 Aligned_cols=143 Identities=11% Similarity=0.006 Sum_probs=73.9
Q ss_pred cccccCCEEEEEcCCCeEEEE-EcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVC-NLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~-d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.+.|++.+++++.. |.+..- + ..++ -..........++++.+.++++.++++. .|.+.+=.. ..+........
T Consensus 179 ~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~-d~G~sW~~~~~- 253 (334)
T PRK13684 179 RRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDP-DDLESWSKPII- 253 (334)
T ss_pred EECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccC-CCCCccccccC-
Confidence 34566655555543 544432 2 1111 1111223346788999999988777654 566543222 22333332221
Q ss_pred C----CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 80 S----PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~----~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ...+..+ +.|++..++ ++.+|.|. .....++.-..... ......+.+.|..+++.+++ +..|.|..|+-
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 1 1235666 677766554 45566554 33344444333322 11125777888777666554 45788877763
No 426
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.75 E-value=2.9 Score=33.38 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.|.+++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488999999889999999999999999975
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=3 Score=37.60 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=79.7
Q ss_pred cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe-e-------CCCEEEEecCCCeEEEEEcCCcc--ccceee------e
Q 028802 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-K-------NGRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (203)
Q Consensus 14 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-~-------~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~------~ 77 (203)
+-|+.+.+|+..++.....+.+-...|..+..- | .=+++++...--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 347899999999876666666655556555432 2 22344443444456665442111 111111 1
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEE--EEEccCC---c-e----------------eeeeccCCCcceEEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLIS--LVGILPN---R-I----------------IQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~--v~d~~~~---~-~----------------~~~~~~~~~~~i~~~~~~~~ 134 (203)
. ..-.|.++ ...+|+.+++| .||.|+ +|....+ + + +..+.+....+|..++....
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2 34567777 56677666555 455443 2222221 1 1 11122122338999999888
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028802 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.+-+..++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88899999999999999977
No 428
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.57 E-value=3.4 Score=33.66 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc---eeEE-EeeC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (203)
...+.++|.. |.++..+.........+...++|.+++... ..+..+|+. ++.+..... .... -..+ .-|+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 3456666643 455555543222222256678888887665 778888875 455444443 2221 2334 5788
Q ss_pred CCEEEEEcC-------------CCcEEEEEccCCceeeeecc--C-----------------------CC-cceEEEEEe
Q 028802 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIAE--H-----------------------SE-YPIESLALS 132 (203)
Q Consensus 92 ~~~l~~~~~-------------dg~v~v~d~~~~~~~~~~~~--~-----------------------~~-~~i~~~~~~ 132 (203)
|++|+.+.. .-.|..+| .+|+.+..+.. | .+ ..+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887771 11244445 55554433210 0 00 147889999
Q ss_pred C-CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 133 H-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ ++.+|+++-.-..|...|.+++.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred CCCCeEEEEcCcceEEEEEECCCCc
Confidence 9 55555555555678888866654
No 429
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.40 E-value=4.1 Score=34.05 Aligned_cols=143 Identities=11% Similarity=0.023 Sum_probs=75.3
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028802 7 AMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~ 72 (203)
+..++.|+.. ..+..||..++.-. ..+... ..-.+++.. ++...++|+.+ ..+..||.... .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~--~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN--Q 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC--c
Confidence 4566777766 35778888776332 222221 222333433 55777888888 35777887642 2
Q ss_pred ceeeecCCCCc-eeEEEeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCCcceEEE-EEeCCCCeEEEEeCCC
Q 028802 73 SDRFVGLSPNS-VDALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-ALSHDRKFLGSISHDS 145 (203)
Q Consensus 73 ~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~-----v~v~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~ 145 (203)
+..+....... -..+..-+|.+.++|+.+|. |-.||..+.+-...-... . +.... .-.-+|...++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-T-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-c-ceeeeEEEEECCEEEEEcCcCC
Confidence 43332201111 11123557888888888864 667887665432221111 1 12222 2233677777777443
Q ss_pred ------cEEEEeCCCc
Q 028802 146 ------MLKLWDLDDI 155 (203)
Q Consensus 146 ------~i~iwd~~~~ 155 (203)
.+..||..+.
T Consensus 439 ~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETN 454 (571)
T ss_pred CccccceEEEEcCCCC
Confidence 4667776654
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.25 E-value=0.72 Score=31.88 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.2
Q ss_pred cEEEEEEeeCC------CEEEEecCCCeEEEEEcC
Q 028802 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 39 ~i~~l~~~~~~------~~l~~~~~d~~i~v~d~~ 67 (203)
.+..++|||.| -+|++.+.++.|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888899854 367788888888888754
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.16 E-value=1.6 Score=35.97 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=63.9
Q ss_pred CcccccC----CEEEEEcCCCeEEEEEcCC-----CeEEEeecCC---cc--cEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 1 MTFAADA----MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS---EE--ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~----~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~---~~--~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
+.|.|-+ ..|++.-....|.||-+.. ++.+..-..+ .- -...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 4577642 2343444558899998752 2222221111 11 1245779999888887766555566677
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEc
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-GLISLVGI 109 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g~v~v~d~ 109 (203)
+.....++.-.. ..+-|.|. |.+||+.++++-.. -.-++||-
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 643333332223 56778888 99999988876543 34568884
No 432
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.14 E-value=4.2 Score=35.27 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=68.5
Q ss_pred cccEEEEEEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeecCCCC----------ceeEE-EeeCCCEEEEEcC
Q 028802 37 EEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPN----------SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 37 ~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~----------~v~~~-~~~~~~~l~~~~~ 100 (203)
..+...++|+| +...|++....|...||++... ...+..... ..+ ....+ |.++.+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 45677899998 4568999999999999999211 011111111 111 12244 7677777777665
Q ss_pred CCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 028802 101 NGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 101 dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (203)
. .+.++|+.+..... .....+...|..+.-+|... +++.. +...|...++..
T Consensus 224 ~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 S-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred C-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 4 57889998775533 23332233788888877632 22222 335677777666
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.92 E-value=2 Score=35.57 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=42.6
Q ss_pred eCCCEEEEecCCCeEEEEEcCC---ccccceee-----------ecC---C-------CCceeEE-Eee----CCCEEEE
Q 028802 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDRF-----------VGL---S-------PNSVDAL-LKL----DEDRVIT 97 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~-----------~~~---~-------~~~v~~~-~~~----~~~~l~~ 97 (203)
++...++++..+|.+....... .+..+... .+. . ......+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 11111111 000 0 1122333 444 6788999
Q ss_pred EcCCCcEEEEEccCCceeeee
Q 028802 98 GSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 98 ~~~dg~v~v~d~~~~~~~~~~ 118 (203)
.+.|+.+++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885543
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.87 E-value=3 Score=30.98 Aligned_cols=123 Identities=11% Similarity=-0.030 Sum_probs=71.9
Q ss_pred EEEeecCCcc-cEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCc
Q 028802 29 VQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGL 103 (203)
Q Consensus 29 ~~~~~~~~~~-~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~ 103 (203)
.+.++..... -...+.|..++.++-+.+.-| .|+.+|+.+ ++......- ......= ... +.+.....-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPL--PPRYFGEGITILGDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE---TTT--EEEEEEETTEEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEEC--CccccceeEEEECCEEEEEEecCCe
Confidence 3444443233 345677878888888877765 688888875 344433322 1222211 222 3334444456889
Q ss_pred EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 104 v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+||..+.+.+.++....+ =+.++ .++..|+.......|+++|..+....
T Consensus 112 ~f~yd~~tl~~~~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEEccccceEEEEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 99999999888888866533 35555 56777777777789999998877543
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=3.1 Score=33.97 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc---------cCCceeeeec----------cCCCcceEEEEEeCCC---CeEEE
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGI---------LPNRIIQPIA----------EHSEYPIESLALSHDR---KFLGS 140 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~---------~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~l~~ 140 (203)
|..+ .++.|..++.++.+|.+.++=. +.|+..-+.+ ..+.-.+..++|+|+. .+|+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 6889999999999987654421 2333221111 1111146778999975 67888
Q ss_pred EeCCCcEEEEeCCCcc
Q 028802 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
...|..|++|++....
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 8899999999987654
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.54 E-value=3.1 Score=32.11 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee----cCCcccEEEEEEeeC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~---~~~~----~~~~~~i~~l~~~~~ 48 (203)
|+|.|+|+++++ ...|.|++++ ..+.. +..+ ......+..++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999877665 5589999999 43332 2222 234567899999994
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.45 E-value=2.4 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=25.6
Q ss_pred ceEEEEEeCCC-----C-eEEEEeCCCcEEEEeCCCcc
Q 028802 125 PIESLALSHDR-----K-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~~~~~~~~-----~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
.+.+++|||-| + .|++.+.++.|.||......
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~ 124 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP 124 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc
Confidence 68899999944 2 57788899999999977543
No 438
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.27 E-value=0.79 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.3
Q ss_pred eCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEE
Q 028802 90 LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 90 ~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (203)
|+++.+++++. ++.|.++|..+++.+..+... . ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-G-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-C-CCceEEe
Confidence 56777776654 788999999888887777654 2 2344554
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.26 E-value=0.77 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CC--CcEEEE
Q 028802 125 PIESLALSHDRKFLGSIS-HD--SMLKLW 150 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~-~d--~~i~iw 150 (203)
.-....|+|||++|+.++ .+ |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 567889999999987665 44 555555
No 440
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.21 E-value=0.74 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=19.8
Q ss_pred cCCcccEEEEEEeeCCCEEEEecC-C--CeEEEE
Q 028802 34 EFSEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (203)
Q Consensus 34 ~~~~~~i~~l~~~~~~~~l~~~~~-d--~~i~v~ 64 (203)
...........|+|||+.|+.++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456778899999998886654 4 555444
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.03 E-value=1.2 Score=36.92 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=41.6
Q ss_pred eCCCEEEEEcCCCcEEEEEccC----Cceeeee-----------ccC----------CCcceEEEEEeC----CCCeEEE
Q 028802 90 LDEDRVITGSENGLISLVGILP----NRIIQPI-----------AEH----------SEYPIESLALSH----DRKFLGS 140 (203)
Q Consensus 90 ~~~~~l~~~~~dg~v~v~d~~~----~~~~~~~-----------~~~----------~~~~i~~~~~~~----~~~~l~~ 140 (203)
++...++.+..+|.+....... +...... .+- .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3777888888888887776653 2111110 000 011345566666 6789999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028802 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
.+.|+.|++||+.++.+
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999887
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.95 E-value=4.6 Score=34.43 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCC-------C----e---------EEEeecCCcccEEEEEEe--eCCCEEEEecCCCeEEEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~-------~----~---------~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~d~~i~v~ 64 (203)
...|+.+..||.|.+|.+.+ . . +...+. ....+++++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788889999999997631 0 0 011111 24568999998 778899999888888888
Q ss_pred EcCCccc--cceeeecCCCCceeEE-Eee-----CCC-EEEEEcCCCcEEEEEc
Q 028802 65 SWGYFKD--CSDRFVGLSPNSVDAL-LKL-----DED-RVITGSENGLISLVGI 109 (203)
Q Consensus 65 d~~~~~~--~~~~~~~~~~~~v~~~-~~~-----~~~-~l~~~~~dg~v~v~d~ 109 (203)
-+..... ....-.. +...|-++ |-+ .|. .+++++..|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6653211 1111112 45566667 533 233 6778888999998887
No 443
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.87 E-value=1.2 Score=32.45 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~ 47 (203)
+...+|++.+++-..++|...|..+|+.+..+.-+..+|++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3445677777777778999999999999999988899999999964
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.66 E-value=8.4 Score=33.46 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=87.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccE-------------EEEEEee--CCCEEEEecC----------CCeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGTV 61 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-------------~~l~~~~--~~~~l~~~~~----------d~~i 61 (203)
+..|+.++.|+.|.-.|..+|+....+... +.+ ..+.-.| .+..+++++. .|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 457888889999999999999888765321 111 0111111 1345555532 5789
Q ss_pred EEEEcCCccccceeeec---------------CCCCceeEE--EeeCCCEEEEEc------------------CCCcEEE
Q 028802 62 LLYSWGYFKDCSDRFVG---------------LSPNSVDAL--LKLDEDRVITGS------------------ENGLISL 106 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~---------------~~~~~v~~~--~~~~~~~l~~~~------------------~dg~v~v 106 (203)
+-+|..+.......-.. .....++.. +.+...+++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999764333221110 001122222 344444444322 1245777
Q ss_pred EEccCCceeeeecc-CCC-------cceEEEEEeC-CCC---eEEEEeCCCcEEEEeCCCcccCCCC
Q 028802 107 VGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 107 ~d~~~~~~~~~~~~-~~~-------~~i~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+.+|+....++. |.+ ....-+.+.. +|+ .++.++.+|.++++|-++++..-..
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88889998877754 221 0111122332 553 6788889999999999998765443
No 445
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.56 E-value=4.6 Score=30.26 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=88.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--C
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~ 79 (203)
+-+|||..-+++...+.|--.|..+|+....-.+.......|..-||+..-++-+.. -|.-+|-++ ..+..|.- .
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 445677777777777777777777777655444555566777788888766654333 344444432 12222221 0
Q ss_pred -CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 -SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........ |.+.|++.+++... .---.|.. ...+.++....+..-+.|+-.|+|...++.-.+..|-..|..++
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 12334444 89999988887632 11111221 23344554443445678889999988777777778887777665
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.49 E-value=6 Score=31.45 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=58.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-----ceeeecC-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-----SDRFVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
...+..+.+.+++..++++ ..|.+..-. . .+.. ....... ....+..+ +.+++..+ .++..|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVSK-G-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEec-C-CCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-
Confidence 4568899999998887766 455544322 1 1221 1222110 11236667 66666554 555667665443
Q ss_pred cCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 110 LPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 110 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
..|+.-....... ....+.+.|.++++-+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3444433332111 1268889988776665555 57777655
No 447
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.46 E-value=6.2 Score=31.51 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+++..+ .||++++++.-..+|.+.+....-.+.+..+..........|.|..+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 3567777 89999999999999999988765555555554442335667777766443
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.04 E-value=7.2 Score=31.55 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeec-----CCcccEEEEEEeeCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSE-----FSEEELTSVVLMKNG 49 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~-----~~~~~i~~l~~~~~~ 49 (203)
|+|.|+|++|++--..|.|++++..++. .+..+. .....+..|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5789999877765446999999865442 222121 135678999999874
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=90.97 E-value=6.1 Score=30.56 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=58.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
...+..+.+.|++.+++++. .|.+..- ....+.............+..+ +.+++..++++ ..|.+++-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888887666654 4544431 1112233333332134556777 78888876665 4576643223333322
Q ss_pred eeeccC---CCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 116 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.....+ ....+..+.+.|++..+++ +.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 221111 1225788899998775554 4566554
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.86 E-value=3.3 Score=27.30 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=60.7
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCc
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
|......|+.++.-|.|.|.+..... .+..+. -...|++|+-.+ ....|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 45556678888888999999876321 223332 245577776544 2356666664 67999999754
Q ss_pred cccceeeecCCCCceeEE-E---ee-CCCEEEEEcCCCcEEEEEccCCceeee
Q 028802 70 KDCSDRFVGLSPNSVDAL-L---KL-DEDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~ 117 (203)
..... +. -...+.++ + .. ..++++ .+.+..|+-||..-.+...+
T Consensus 84 ~d~Fy--ke-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFY--KE-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhh--hh-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEE
Confidence 33322 11 23445555 3 22 233444 44445666666543333333
No 451
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=90.59 E-value=2.9 Score=36.42 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC-----eEEEEEcCCccccceeee
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~ 77 (203)
.+.|.+-|.........-..+..+|.+.+|||||++|+. .+..+ .|++-++.+.+.-+-.+.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 358888888765544331345778999999999999987 44333 588888876554433333
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=90.36 E-value=8.7 Score=31.35 Aligned_cols=103 Identities=11% Similarity=-0.039 Sum_probs=51.0
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeee
Q 028802 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~ 77 (203)
+..+++|+.+ ..+..||..++.-.. .+....... ++ ..-++...+.|+.+ ..+..||... ..+..+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~--n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGD--AAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCC--CeEEECC
Confidence 3345666643 356778877654322 222111111 22 23466777777753 3577787642 2233222
Q ss_pred cCCCCce--eEEEeeCCCEEEEEcCCC---cEEEEEccCCce
Q 028802 78 GLSPNSV--DALLKLDEDRVITGSENG---LISLVGILPNRI 114 (203)
Q Consensus 78 ~~~~~~v--~~~~~~~~~~l~~~~~dg---~v~v~d~~~~~~ 114 (203)
. -..+. .++..-+|+..+.|+.++ .+..||..+.+-
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 2 11111 112344677777777543 466788776543
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.11 E-value=7.3 Score=30.07 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=50.7
Q ss_pred cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee----ecCCCCceeEE-EeeC---CCEEEEEcC-C-------
Q 028802 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (203)
..+.|+|.|+++++++ ...|.|.+++..... ..+..+ .. ....+..+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987775 459999999832211 111111 11 23445666 7774 334443332 1
Q ss_pred -CcEEEEEccCC-------cee-eeecc--CCCcceEEEEEeCCCCeEEEEeC
Q 028802 102 -GLISLVGILPN-------RII-QPIAE--HSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 102 -g~v~v~d~~~~-------~~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
..|.-|....+ +.+ ..+.. ........|+|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13433444332 111 11222 11114567999999966665553
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.07 E-value=5.5 Score=28.58 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=36.7
Q ss_pred CEEEEEcCCCeEEEEEcCC--CeEEEeecCCcccEEEEEEeeCCCEEEEecC
Q 028802 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 57 (203)
..|+.+.....|.+|++.+ .+++..+..- ++|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 4555545667899999883 3556667653 78999999999999998543
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.04 E-value=7.8 Score=30.31 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=78.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC-cee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~ 85 (203)
.++++..+|.|.-.|..++..+....... ..+..-.+..+|+ ++.++.++.++.+|..+ +..+-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CCCeEEe
Confidence 45555778888888988887665444321 2333333444665 77778888888888854 444434433 221 011
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeC--CCcEEEEeCCCcccC
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISH--DSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~ 158 (203)
...-.....++.++.++.+...+..+|..+....... ...+..-....+ ..++.+.. ++.+.-+++.++...
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEe
Confidence 1111123344444477888888888888766644321 111111111122 33344443 556777777666544
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.88 E-value=2.8 Score=33.61 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=59.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
+.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+.+ .-++..+..| +.+|-+......++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 469999999999999999999998543322 222333456888899865 4455444434 6666664444445544
Q ss_pred ecCCCCce-eEEEeeCCCEEEEEc
Q 028802 77 VGLSPNSV-DALLKLDEDRVITGS 99 (203)
Q Consensus 77 ~~~~~~~v-~~~~~~~~~~l~~~~ 99 (203)
+. +...| +-+|.++.+.++.++
T Consensus 150 ks-~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hh-cccCccEEEEccccceEeeec
Confidence 44 44443 333666666555443
No 457
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.84 E-value=1.3 Score=20.87 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.7
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRS 33 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~ 33 (203)
.+++++.++.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999988877653
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.21 E-value=0.49 Score=40.74 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=61.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEE-----------EEeeCCCEEEEecCCCeEEEEEcCCcc----
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSV-----------VLMKNGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l-----------~~~~~~~~l~~~~~d~~i~v~d~~~~~---- 70 (203)
+.-++.++-.+++|++..+.+... ..+..|..++..+ ..+|||..|+..+.||.++.|.+...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 455677777888888877654321 2233344433322 268999999999999998888764332
Q ss_pred ccceeeecCCCCc-eeEE-EeeCC---------CEEEEEc-CCCcEEEEEccCCcee
Q 028802 71 DCSDRFVGLSPNS-VDAL-LKLDE---------DRVITGS-ENGLISLVGILPNRII 115 (203)
Q Consensus 71 ~~~~~~~~~~~~~-v~~~-~~~~~---------~~l~~~~-~dg~v~v~d~~~~~~~ 115 (203)
.++...+. |... -.|. |+... .++++++ ..+-+++|....-+|+
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 33444455 5532 2222 32221 1233333 3455888876655555
No 459
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.92 E-value=9.7 Score=29.84 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=52.4
Q ss_pred ccEEEEEEeeCCCEEEEec-----------CCC-eEEEEEcCC-cccc--ceeeecCCCCceeEE-EeeCCCEEEEEcCC
Q 028802 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~-----------~d~-~i~v~d~~~-~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....|+|.++|+++++.. ..+ .|.+++-.. .+.. ...+.. .......+ +.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 3456789999999877753 223 676665422 2221 233333 33344566 67777 4444444
Q ss_pred CcEEEEEccC-C----c--ee-eeeccC---CCcceEEEEEeCCCCeEEEEe
Q 028802 102 GLISLVGILP-N----R--II-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 g~v~v~d~~~-~----~--~~-~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...++.+... + + .+ ..+... .......++|.|||.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333334421 1 1 11 112211 011467899999998766544
No 460
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.46 E-value=1.8 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.3
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
.+++++.+|.|+-+|..+|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566789999999999999999877654
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=9.3 Score=29.00 Aligned_cols=143 Identities=8% Similarity=0.020 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--eeecCCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~ 81 (203)
+++.+.+..+.-++|.|+.+... +..+.. .+--. .|.-.|++..++..+.-+.+.|+.....+.- .... ..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEE--EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence 45666777778899999986532 222222 12122 3445688999888666677889875433321 1221 22
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....+ .-.|++.+.++.++-+.+.|+... .+...-....+..++++..+++--+++.. +.-+.+-|..+..
T Consensus 172 ~d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 172 GDTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CCceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 222222 346778888889999999998643 22211111112257777777775555544 4456666766554
No 462
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.36 E-value=1.9 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.8
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecC
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~ 35 (203)
.++.++.+|.|+-.|..+|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466678999999999999999887764
No 463
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=16 Score=31.43 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.7
Q ss_pred EEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 19 i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
|+||++. |+++..+......+..+.|+.+. .|++...+|++++|++.
T Consensus 66 I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 6666653 55555555445578899998654 56667889999999985
No 464
>PRK10115 protease 2; Provisional
Probab=87.67 E-value=17 Score=31.24 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=70.0
Q ss_pred CcccccCCEEEEEcCC------CeEEEEEcCCC--eEEEeecCCcccEE-EEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELT-SVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------~~i~v~d~~~~--~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~---d~~i~v~d~~~ 68 (203)
++|++|++.|+.+..+ ..|+.+++.++ +....+........ .+..+.++.+++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4789999877665432 46888888877 33333433223333 2233337777654433 45788888532
Q ss_pred c-cccceeeecCCCCceeEEEeeCCCEEEEEcCC----CcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 69 F-KDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~-~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ......+.. .......+.+.. ..++..+.. ..|...++. +++....+.......|..+.+. .+..+++..
T Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPR-RKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred CCCCceEEEEC-CCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence 1 222222222 222222223323 333333322 234444444 2222222322223357777776 223444555
Q ss_pred CCCcEEEEe
Q 028802 143 HDSMLKLWD 151 (203)
Q Consensus 143 ~d~~i~iwd 151 (203)
.++.-+++-
T Consensus 334 ~~g~~~l~~ 342 (686)
T PRK10115 334 QRGLTSLRQ 342 (686)
T ss_pred eCCEEEEEE
Confidence 566544443
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.40 E-value=11 Score=28.78 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=34.4
Q ss_pred CCCEEEEecC-----CCeEEEEEcCCccccceeeecCC-CCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCce
Q 028802 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS-PNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRI 114 (203)
Q Consensus 48 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~dg----~v~v~d~~~~~~ 114 (203)
++...+.|+. ...+.+||+.+ ..+..+.... ....... ...++++.+.|+.++ .+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLET--QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCC--CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5566666664 24678888763 3333332101 1111112 345677777777653 356888876543
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.18 E-value=11 Score=28.67 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=66.9
Q ss_pred ccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----cc-ccceeeecC----CCCceeEE-EeeCC------------CE
Q 028802 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FK-DCSDRFVGL----SPNSVDAL-LKLDE------------DR 94 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~-~~~~~~~~~----~~~~v~~~-~~~~~------------~~ 94 (203)
..-+.|+++|.+.+-++....+...+||... .. ..+-.+... .....+.+ |+... ..
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3457899999888777777788999999851 11 112222210 01233334 44322 23
Q ss_pred EEEEcCCCcEEEEEccCCce-----eeeeccCCCcceE-EEEEeC--CCCeEEEEe-CCCcEEEEeCC
Q 028802 95 VITGSENGLISLVGILPNRI-----IQPIAEHSEYPIE-SLALSH--DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 95 l~~~~~dg~v~v~d~~~~~~-----~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~-~d~~i~iwd~~ 153 (203)
++.++++|+|.-|...-+.. ...+.......|+ .+++.. .+.+|+.+. ..++|.|||-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 67889999999998543222 1222211112343 355543 356766555 78999999854
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.94 E-value=12 Score=28.77 Aligned_cols=111 Identities=12% Similarity=0.206 Sum_probs=62.9
Q ss_pred EEEEEeeCCCEEEEecCC------CeEEEEEcCCccccceeee-------------c-CCCCceeEE-EeeCCCEEEEEc
Q 028802 41 TSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFV-------------G-LSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~-------------~-~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
-+|++.+++.++++.-.+ ..|..++.. +.....+. . .....+-.+ ++|+|+.|+++.
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 377887788888776666 778888764 33333321 0 023346677 799999766654
Q ss_pred C-----CC--c-------EEE--EEccC-Cceee--eeccC------CCcceEEEEEeCCCCeEEEEe-----CCCcEEE
Q 028802 100 E-----NG--L-------ISL--VGILP-NRIIQ--PIAEH------SEYPIESLALSHDRKFLGSIS-----HDSMLKL 149 (203)
Q Consensus 100 ~-----dg--~-------v~v--~d~~~-~~~~~--~~~~~------~~~~i~~~~~~~~~~~l~~~~-----~d~~i~i 149 (203)
+ ++ . +++ ||..+ +.... .+... ....|+.+.+-+++++|+.-- ....++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 3 22 1 344 55544 32221 22222 134789999999998776322 2344555
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
+.+.
T Consensus 246 ~~v~ 249 (326)
T PF13449_consen 246 YRVD 249 (326)
T ss_pred EEEE
Confidence 5443
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=20 Score=30.86 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.9
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
.+|+..+|+.-...|.|.+.+....+++..+......+.-.|+|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688888898888899998888777666655542222133356665443
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.36 E-value=4.4 Score=29.07 Aligned_cols=48 Identities=8% Similarity=0.172 Sum_probs=35.2
Q ss_pred CEEEEEcCCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 93 DRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 93 ~~l~~~~~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..++.+...+.|-+|++.. .+.+..+..- + .|..+.++..|.||++.=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEE
Confidence 4444446677899999883 3455556544 3 799999999999999865
No 470
>PLN02193 nitrile-specifier protein
Probab=85.08 E-value=19 Score=29.31 Aligned_cols=145 Identities=10% Similarity=-0.089 Sum_probs=67.3
Q ss_pred CEEEEEcCC-----CeEEEEEcCCCeEEE--eecC-CcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccce
Q 028802 8 MKLLGTSGD-----GTLSVCNLRKNTVQT--RSEF-SEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~-~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~ 74 (203)
++++.|+.+ +.+.+||+.+.+-.. .+.. ...+....+..-++++++.|+.++ .+..||+.+ ..+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t--~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD--KKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC--CEEE
Confidence 344555543 357788887653322 1110 111111112223556666666543 466777653 2222
Q ss_pred eeecC-----CCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc---CCCcceEEEEEeCCCCeEEEEe
Q 028802 75 RFVGL-----SPNSVDALLKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~~-----~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
.+... .... ..+...+++.++.++.+ ..+.+||+.+.+-...-.. .......++ ..-+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 22110 0111 11223466777776654 4588999887654322111 111111222 233566777777
Q ss_pred CC--------------CcEEEEeCCCcc
Q 028802 143 HD--------------SMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d--------------~~i~iwd~~~~~ 156 (203)
.. ..+.+||+.+..
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCE
Confidence 43 246778876553
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.78 E-value=6.2 Score=24.02 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 100 ~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..|.+..||+.+++....+.+- . -...|++++|+.+|+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 3567888999887765444443 2 367899999999876554
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.71 E-value=18 Score=32.30 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=65.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
|..|-..++++|-. ..+++|++...++++..+ .-...|..+.+ .+..+++|...-.+.++-.+.....+..+..
T Consensus 940 Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 45565666666544 689999998776654443 22456667766 4667888877666666655544455555543
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEc
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
..+..+++++.-|...++.+..-|.+.+.-+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0223455555667777888877787777654
No 473
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.69 E-value=14 Score=27.27 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=64.7
Q ss_pred EEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecC-C--CeEEEEEcCC-ccc-cce----eeecCCCCceeEEEe
Q 028802 20 SVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLYSWGY-FKD-CSD----RFVGLSPNSVDALLK 89 (203)
Q Consensus 20 ~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~-d--~~i~v~d~~~-~~~-~~~----~~~~~~~~~v~~~~~ 89 (203)
.+||+.+++... +.. ...-..+-.+.++|++|++|+. + ..+++|+... ... .+. .+.. ..--.+...-
T Consensus 49 ~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 467777664422 221 1112223346689999998876 2 3477776532 000 111 1111 1111222246
Q ss_pred eCCCEEEEEcCCCc-EEEEEccC-C-cee-eeecc----CCCcceE-EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 90 LDEDRVITGSENGL-ISLVGILP-N-RII-QPIAE----HSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 90 ~~~~~l~~~~~dg~-v~v~d~~~-~-~~~-~~~~~----~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+|+.|+.|+.... .-+|.... . ... ..+.. ......+ .+...|+|+.++.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 79999999887643 33444321 1 111 11111 0010111 356789999998887654 45566554
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=13 Score=26.82 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeecCCCCc
Q 028802 7 AMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
|.++.+.+. ...|++|++.+++.+..-.-....+..--...-+..+..-. .+|....||..+ .+++..+. ..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~--y~Ge 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS--YEGE 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc--cCCc
Confidence 444445443 35699999999887655443222333222233344444333 467778888764 34444443 2344
Q ss_pred eeEEEeeCCCEEEEEcCCCcEEEEEccCCc
Q 028802 84 VDALLKLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 84 v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~ 113 (203)
-+.+ ..++.-++.+...-.++.-|..+..
T Consensus 133 GWgL-t~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 133 GWGL-TSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ceee-ecCCcceEeeCCceEEEecCHHHhh
Confidence 4555 3344556666555567776765543
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.56 E-value=14 Score=27.24 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred cccccCCEEEEEcC-C--CeEEEEEcCC---C-eEE---EeecCCcccEEEEEEeeCCCEEEEecCCC-eEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSG-D--GTLSVCNLRK---N-TVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d--~~i~v~d~~~---~-~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-~i~v~d~~~~~ 70 (203)
++-|||++|.+|+. + ..+++++... . ... ..+ .....--.....|||+.|+.|+... +..+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 35689999988865 2 3577777543 1 110 011 1122333455668999999988764 34444432111
Q ss_pred c-cce--eeec---CCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028802 71 D-CSD--RFVG---LSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 71 ~-~~~--~~~~---~~~~~v~-~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~ 119 (203)
. ... .+.. ......+ .+ ..|+|++++.+..+. .+||..+.+.+..+.
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 1 111 1110 0111222 22 489999999998764 457887776655554
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.38 E-value=25 Score=30.00 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc---------CCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC---eEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL---------RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG---TVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~---------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~---~i~v~d~~ 67 (203)
+.|.++++.+++...+|.|.+|+. ........-..+..-|..........++++.+. .+ ..+++.+.
T Consensus 135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~ 214 (670)
T PF10395_consen 135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLS 214 (670)
T ss_pred EEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEec
Q ss_pred Cccccceeee---cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC-------CCcceEEEEEeCCCC
Q 028802 68 YFKDCSDRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-------SEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~ 136 (203)
.....+..+. . +....... |......++.- .+..|.+|++...+...++... .. .|.-.+.+++ +
T Consensus 215 ~~~~~~~El~s~~~-e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~-~vSl~~~s~n-R 290 (670)
T PF10395_consen 215 NESSSIFELSSTIL-ENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDD-LVSLKPPSPN-R 290 (670)
T ss_pred cCCcceEEeehhee-ccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccccc-ceEeecCCCC-e
Q ss_pred eEEEEeCCCcEEEEeC
Q 028802 137 FLGSISHDSMLKLWDL 152 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~ 152 (203)
.|++. +..|++.|+
T Consensus 291 vLLs~--~nkIyLld~ 304 (670)
T PF10395_consen 291 VLLSV--NNKIYLLDL 304 (670)
T ss_pred EEEEc--CCEEEEEee
No 477
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.27 E-value=17 Score=28.05 Aligned_cols=41 Identities=5% Similarity=-0.143 Sum_probs=18.5
Q ss_pred cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.+.+||..+.+-...-... .......+..-+++.++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp-~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLP-QGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCC-CCceeeEEEEcCCEEEEEeccC
Confidence 3567887654322111111 1112222334466677777644
No 478
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=83.83 E-value=3 Score=19.02 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 126 IESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
...++.+++|+.+++-.....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4667778888777777666666654
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.78 E-value=3.9 Score=35.03 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=48.8
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+.++ -+|.+.-+++++.||.|.+|+.-+.+........ . +-..+.|...| |++...|+...-|.-..-.+++
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~-p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqq 89 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-K-PKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQ 89 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-C-Cccceeeeccc--eEEEeccchhheeeccCcchhh
Confidence 35556 5799999999999999999998765543333322 1 34556665444 6666778888888765544443
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.03 E-value=15 Score=27.99 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccC
Q 028802 91 DEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 91 ~~~~l~~~~~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++++.|+.+| +++.++.. +.....+.. . +|+++...+.-+.|++.+ ....++++++.....+
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~--~-~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~ 78 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGR--R-SVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEK 78 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecCc--C-ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhh
Confidence 346899999998 45555554 334443322 2 799999999888777665 3445999999776643
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.95 E-value=18 Score=27.31 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeecC----CCCcee
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGL----SPNSVD 85 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~----~~~~v~ 85 (203)
...|++||..+.+-...-.+-.+.|+.|.|..+.++++.|. ....+..||+.. ..+..+... -.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45699999887654443344567899999986666666654 345678888863 344444330 235666
Q ss_pred EE-E-eeCCCEEE-EEc-CC--CcEEEEEcc
Q 028802 86 AL-L-KLDEDRVI-TGS-EN--GLISLVGIL 110 (203)
Q Consensus 86 ~~-~-~~~~~~l~-~~~-~d--g~v~v~d~~ 110 (203)
.+ + ..++..+. .|. .. ..|..||-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 66 3 34444343 333 22 346667643
No 482
>PLN02153 epithiospecifier protein
Probab=82.86 E-value=20 Score=27.70 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=49.2
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEE--EeecC---CcccEEEEEEeeCCCEEEEecCC-----------CeEEEEE
Q 028802 7 AMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEF---SEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~v~d~~~~~~~--~~~~~---~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~v~d 65 (203)
+++++.|+.+ ..+.+||+.+.+-. ..+.. ...+....+..-++..++.|+.+ ..+.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 3444555542 35778888765322 22210 11122222223355666666643 2467788
Q ss_pred cCCccccceeeecCCC----Cc-eeEEEeeCCCEEEEEcC-------------CCcEEEEEccCCcee
Q 028802 66 WGYFKDCSDRFVGLSP----NS-VDALLKLDEDRVITGSE-------------NGLISLVGILPNRII 115 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~----~~-v~~~~~~~~~~l~~~~~-------------dg~v~v~d~~~~~~~ 115 (203)
..+ ..+..+.. .. .. -.++...++++++.++. ...|.+||+.+.+-.
T Consensus 166 ~~~--~~W~~l~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IAD--GKWVQLPD-PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCC--CeEeeCCC-CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 753 23333322 11 00 01122345566555442 145888998776433
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.85 E-value=22 Score=28.16 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=80.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe----eCCCE--EEEec-CC---CeEEEEEcCCccccce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~----~~~~~--l~~~~-~d---~~i~v~d~~~~~~~~~ 74 (203)
|...+|+.....+-+.+||+... .++.+.. ++++.+..- -.++. |++++ .+ ..|++|-+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 44557777788899999998754 5555643 334444322 23433 33433 32 5799998853222333
Q ss_pred eeec------CCCCceeEE--E-ee-CCC-EEEEEcCCCcEEEEEcc---CC----ceeeeeccCCCcceEEEEEeCCCC
Q 028802 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~dg~v~v~d~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
.+.. .....+..+ + +| +|. +++....+|.+..|-+. .+ +.+..+...+ .+..++......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3321 011223333 3 44 455 44456678888888764 23 3456666553 688889988888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028802 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+|+.+-.+.-|.-|+.+
T Consensus 221 ~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred CEEEecCccEEEEEecC
Confidence 99999888777777765
No 484
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.45 E-value=8.8 Score=29.21 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=48.4
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc--ce--EEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--PI--ESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~--~i--~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.++ ..++|.+|+++-.-..|.+.+..+|+.+..+.+.... .. ...+|-.+-+++-.+..++.|.+||=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4455 4668899999988899999999999999988665211 11 113344454555455678889999863
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.14 E-value=6.2 Score=32.29 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
..++|+|+.-|-|++||--.-+...-+.+-...|..+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 458999999999999996544444455666778999999999998876654 566777764
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=81.86 E-value=9.1 Score=23.13 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 125 PIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
....|.++|++++|.+++ ..+.|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 356789999999987666 67889999864
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.32 E-value=13 Score=24.58 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=60.2
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCcc-------ccceeeecCCCCceeEE-E---ee--CCCEEEEEcCCCcEEEEEcc
Q 028802 44 VLMKNGRKVVCGSQSGTVLLYSWGYFK-------DCSDRFVGLSPNSVDAL-L---KL--DEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~v~~~-~---~~--~~~~l~~~~~dg~v~v~d~~ 110 (203)
.|.....-|++++..+.|.|++..... ..+..+. -...|+++ . .| ....|+.|+.. .|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 344444567777777888888764321 1223333 34556666 2 22 34556666554 68899998
Q ss_pred CCceeeeeccCCCcceEEEEEeC---CCCeEEEEeCCCcEEEEeCCC
Q 028802 111 PNRIIQPIAEHSEYPIESLALSH---DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+..-..+ + .+.++.+-. ...-|+..+.+..|.-||...
T Consensus 82 ~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 77666544444 3 466666632 223445555567777777643
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.00 E-value=23 Score=27.26 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=57.7
Q ss_pred cccEEEEEEeeCCCEEEEecCCCe------EEEEEcCCcccc---ce-----eeecCCCC--------ceeEE-EeeCCC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGT------VLLYSWGYFKDC---SD-----RFVGLSPN--------SVDAL-LKLDED 93 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~------i~v~d~~~~~~~---~~-----~~~~~~~~--------~v~~~-~~~~~~ 93 (203)
-+.+..|.+.+++..++..+.++. ++.+.+...... +. .+.. ..+ ..-.+ +.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRD-PDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccC-CCCCcCCcCCCChhHeEEecCCC
Confidence 356788888865555666666666 555555431100 00 1111 111 22345 556676
Q ss_pred EEEEEcCC------CcEEEEEccCCceeeeecc--------------CCCcceEEEEEeCCCCeEEEEe
Q 028802 94 RVITGSEN------GLISLVGILPNRIIQPIAE--------------HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 94 ~l~~~~~d------g~v~v~d~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
++++.=.+ ..|+.++.. |+.+..+.. .......+++++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 66665555 678888865 554433311 1122688999999999666554
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.65 E-value=34 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 132 SHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.+++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67789999999999999999998755
No 490
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=80.63 E-value=1.2 Score=31.63 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=11.5
Q ss_pred CCCEEEEecCCCeEEEEE
Q 028802 48 NGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d 65 (203)
++++..+-..+|.+++|-
T Consensus 46 NSrYATVr~dngkLyLym 63 (303)
T COG5129 46 NSRYATVRADNGKLYLYM 63 (303)
T ss_pred cCcceEEEecCCEEEEEe
Confidence 445555556677888774
No 491
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.05 E-value=11 Score=28.76 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=44.2
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----EEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
.++|.+|+++-.-.+|.+.+-.+|+.+..+.+.... -...+|-.+-+.+-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 457889999988899999999999999988765221 111334344445545567888999985
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.87 E-value=19 Score=31.38 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe---EEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEE--------EEcCCccccce
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNT---VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLL--------YSWGYFKDCSD 74 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~---~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v--------~d~~~~~~~~~ 74 (203)
...+..|+.++.|-++.-..+. ..... ......+.++.+++. .+..|.-||++-+ ||.. +-.
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e----p~~ 620 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE----PNI 620 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC----Ccc
Confidence 3457788888999998866321 11222 223445666666543 2333444444443 4432 111
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. ...++... +.. -++.++.+|.|.+|...+......+..|- ...|++|....+|-+++..+.| .++.++
T Consensus 621 ~~~~-g~lPvrsla~~e---d~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfh 695 (925)
T KOG3522|consen 621 SIPT-GSLPVRSLAFQE---DFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFH 695 (925)
T ss_pred cccc-CCccccchhhhh---ceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEec
Confidence 1122 23455555 322 25677889999999987654444433331 2279999998888777666544 566667
Q ss_pred CCCcccCC
Q 028802 152 LDDILKGS 159 (203)
Q Consensus 152 ~~~~~~~~ 159 (203)
..+....+
T Consensus 696 tetl~hlq 703 (925)
T KOG3522|consen 696 TETLWHLQ 703 (925)
T ss_pred ccccCCcc
Confidence 76665443
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.61 E-value=37 Score=27.65 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=23.9
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
-...+.|+|.|++++|++--..|.|++++-.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 4557889999999877766546999998754
No 494
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.93 E-value=37 Score=27.31 Aligned_cols=58 Identities=17% Similarity=-0.005 Sum_probs=35.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
.+|++-+-||.+.+|+-+.-.....+.. .--..-+.+.+....|++++.+..+..|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4677888999999999665433333322 111223466666667777766666666544
No 495
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.77 E-value=9.6 Score=23.20 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 56 (203)
+|.+..||..+++....+.+ -.-.+.+++++++.+|+++-
T Consensus 36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 57788899888865444433 23467899999999766643
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.29 E-value=6.8 Score=19.40 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=15.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRK 26 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~ 26 (203)
.+..|+.++.+|.|+.+|..+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788888899999988753
No 497
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.44 E-value=27 Score=25.98 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEE---EeeCCCEEEEecCCCeEEEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV---LMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~---~~~~~~~l~~~~~d~~i~v~ 64 (203)
..|+.|..+|.|.|.|.+.-..+..+.-...++.-.+ |..-.-.+++++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3688999999999999887777666665444442111 21122357778889988763
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.39 E-value=35 Score=26.21 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=43.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC------CC-eEEEeecC-----CcccEEEEEEeeCCC------------EEEEec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR------KN-TVQTRSEF-----SEEELTSVVLMKNGR------------KVVCGS 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~------~~-~~~~~~~~-----~~~~i~~l~~~~~~~------------~l~~~~ 56 (203)
|+++|.+.+.++....+...+||.. .. .++..+.. .....+.+.|+.... .++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 5788988888887778899999986 11 23334432 123466677764322 356678
Q ss_pred CCCeEEEEEc
Q 028802 57 QSGTVLLYSW 66 (203)
Q Consensus 57 ~d~~i~v~d~ 66 (203)
++|+|.-|.-
T Consensus 108 EdGTisaW~p 117 (336)
T TIGR03118 108 EDGTLSGWAP 117 (336)
T ss_pred CCceEEeecC
Confidence 8888888863
No 499
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=75.11 E-value=62 Score=29.02 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-ecCCCCce
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~v 84 (203)
+|++||.. ...|++|.+.+.+.++.--.+..++..+.+.-.+..+++|.--+.+.+...+........+ ...++.+.
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wm 916 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWM 916 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccce
Confidence 45555544 4579999998886666555677888889988899999999887877776554322112222 11144555
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEc
Q 028802 85 DALLKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
.++-.-++..++-+...|.+.+...
T Consensus 917 taveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 917 TAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred eeEEEecCceEEeecccccEEEEEe
Confidence 5553345556666667777776543
No 500
>PRK13615 lipoprotein LpqB; Provisional
Probab=75.00 E-value=49 Score=27.78 Aligned_cols=152 Identities=15% Similarity=0.104 Sum_probs=84.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~ 80 (203)
+.|+++..++....++.++++..... ....+. ...++...|.+++ .+.+.......++......+.... ......
T Consensus 340 avS~dg~~~A~v~~~~~l~vg~~~~~-~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~~ 415 (557)
T PRK13615 340 TLSADGRQAAVRNASGVWSVGDGDRD-AVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWTA 415 (557)
T ss_pred eEcCCCceEEEEcCCceEEEecCCCc-ceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccccC
Confidence 56788888888777777777765522 222222 2345666777776 555544433344443322222211 111112
Q ss_pred CCceeEE-EeeCCCEEEEEcC---CCcEEEEEcc--CCc--ee--e--eeccCCCcceEEEEEeCCCCeEEEE---eCCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSE---NGLISLVGIL--PNR--II--Q--PIAEHSEYPIESLALSHDRKFLGSI---SHDS 145 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~--~~~--~~--~--~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~ 145 (203)
...|..+ .+++|..++.... .+.|++--+. .+. .+ . .+..... .+.++.|..++..++.+ +.+.
T Consensus 416 ~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~-~v~sl~W~~~~~laVl~~~~~~~~ 494 (557)
T PRK13615 416 TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPG-TPLDATWVDELDVATLTLAPDGER 494 (557)
T ss_pred CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcC-cceeeEEcCCCEEEEEeccCCCCc
Confidence 3568888 8999998876543 3456653322 221 12 1 1111113 68899999998876554 2446
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.+++..+....+.
T Consensus 495 ~v~~v~v~g~~~~ 507 (557)
T PRK13615 495 QVELHQVGGPSKD 507 (557)
T ss_pred eEEEEECCCcccc
Confidence 7888888755444
Done!