BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028804
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 150/172 (87%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD SADQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
RL+MSTERL +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH T+
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 259 bits (662), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 149/172 (86%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR
Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N ARDELLE+GMAD + SADQR
Sbjct: 61 NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTV 172
RL+MST+ L +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH T+
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETL 172
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/171 (71%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
MS VFEGYERQYCELS LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S + ++R+EL+ESGMAD VSADQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHN 171
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+ P + M +++R YK ++ L+ + KR ++ R+ELL DA S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELL----GDAGNSSENQR 115
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHN 170
LL +TERL S+ R++ + +ETE++G +L++L R+ + A +
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+ P + M +++R YK ++ L+ + KR ++ R+ELL D S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELL----GDDGNSSENQR 115
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
LL +TERL S+ R++ + +ETE++G +L++L R+ + A
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRA 163
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K + L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
+ P + M +++R YK ++ L+ + KR ++ R+ELL ++G + + ++
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELLGDAGNSSENQLIKLR 119
Query: 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH 169
++R LL +TERL S+ R++ + +ETE++G +L++L R+ + A
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRAR 171
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP 64
E YE++Y L A + K S GE + + L++ D +I +M++E +
Sbjct: 1 METYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPT 57
Query: 65 NVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQA---ARDELLESGMADAMMVSADQRG 121
+ + ++ ++R Y++ L + +K + +A RDE SG A DQR
Sbjct: 58 SERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRT 115
Query: 122 RLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
RLL T RL S+ R+ ES+R ETE +G SIL+DLH QR L H+
Sbjct: 116 RLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHS 162
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 31 GELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDL 81
E Q LS+ T L D+ L+ +MD+E + + +A +KLRE+K
Sbjct: 24 AEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK--- 80
Query: 82 NNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESR 141
+++++KR V+ RD L G +A + DQR +LL + L S DR+K++
Sbjct: 81 KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDAS 138
Query: 142 RTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLI 179
R ETE +G I+ DL QR++L +A T+ + S +
Sbjct: 139 RIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYV 176
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Query: 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
VFE E+ + + ++R+ GE KK + E++ +D+A I +M+ A++
Sbjct: 3 VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHP 62
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSAD-QRGR 122
+K L +K ++Y +D+ K EV+ + NQ + S D D QR
Sbjct: 63 QRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW--SNAPDDYQSQYDNQRQH 118
Query: 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQ 161
LL + L+ ++DR+ + + ++E++G +IL DL +Q
Sbjct: 119 LLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQ 157
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
T R ++ A + M QR LL TE LN +T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETD 157
Query: 149 ELGVSILQDLHQQRQSL 165
++G I+++L +QR L
Sbjct: 158 QIGSEIIEELGEQRDQL 174
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
T AR ++ A + M QR LL T+ LN +T I+ S R ET+
Sbjct: 98 TPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETD 157
Query: 149 ELGVSILQDLHQQRQSL 165
++G I+++L +QR L
Sbjct: 158 QIGSEIIEELGEQRDQL 174
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
T R +L LE+ + + QR LL TE LN +T I+ S R
Sbjct: 98 TPLTAAPGGRGDLKYGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAT 154
Query: 146 ETEELGVSILQDLHQQRQSL 165
ET+++G I+++L +QR L
Sbjct: 155 ETDQIGTEIIEELGEQRDQL 174
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
T R +L LE+ + + QR LL TE LN +T I+ S R
Sbjct: 98 TPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAA 154
Query: 146 ETEELGVSILQDLHQQRQSL 165
ET+++G I+++L +QR L
Sbjct: 155 ETDQIGSEIIEELGEQRDQL 174
>sp|P48759|PTX3_MOUSE Pentraxin-related protein PTX3 OS=Mus musculus GN=Ptx3 PE=1 SV=2
Length = 381
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 15 LSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAM--LLS 72
L+ G++R C A D L + ++ D + L R D EAR + V + +L
Sbjct: 95 LAGGMARPCAAGGPADARLVRALEPLLQESRDASLRLARLEDAEARRPEATVPGLGAVLE 154
Query: 73 KLREYKTDLNNLKNEVKR 90
+LR + DL+ +++ V R
Sbjct: 155 ELRRTRADLSAVQSWVAR 172
>sp|Q54HH2|SRR_DICDI Probable serine racemase OS=Dictyostelium discoideum GN=srr PE=3
SV=1
Length = 324
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%)
Query: 57 LEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVS 116
+ A+SL PN+K L T + L E+++ T G N A L G ++
Sbjct: 192 ITAKSLNPNIKVFAAEPLGADDTYRSLLSGEIQKHTPGKPNTIADGLLTTVGSLTFPIIK 251
Query: 117 ADQRGRLLMSTERLNHSTDRIKESRRTMLE 146
+ G +L++ + + ++ + E + ++E
Sbjct: 252 ENCDGVILVTEDEIKYAMKLVWERMKIIIE 281
>sp|Q3IHQ9|Y2242_PSEHT Putative reductase PSHAa2242 OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=PSHAa2242 PE=3 SV=1
Length = 397
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 17 AGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLRE 76
AGL K A E+K++ + IK L D +I + R PN + S L+
Sbjct: 101 AGLWSKNINGDAFSNEIKQKAIDTIKADLGKVDLIIYSL-ASPRRTDPNTGEVFSSTLKP 159
Query: 77 YKT-----DLNNLKNEVKRVTSGNVNQAARDELLE 106
+LN K E+ +T NQ D ++
Sbjct: 160 IGNAVTTKNLNTSKREIDEITVEAANQDDIDNTIK 194
>sp|P37718|ACSC_GLUXY Cellulose synthase operon protein C OS=Gluconacetobacter xylinus
GN=acsC PE=1 SV=1
Length = 1302
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 109 MADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHA 168
+AD M + AD RL M +++ T ++E+ T GV++ DL +QR +LHA
Sbjct: 595 IADEMAIKADLASRLSM----VSNPTPLVREALAAPDPTGARGVAV-ADLFRQRGDMLHA 649
Query: 169 H 169
H
Sbjct: 650 H 650
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSL 165
++I+E ++ + ET EE G++ L Q+R L
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSL 165
++I+E ++ + ET EE G++ L Q+R L
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSL 165
++I+E ++ + ET EE G++ L Q+R L
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus
GN=SMC3 PE=1 SV=1
Length = 1218
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSL 165
++I+E ++ + ET EE G++ L Q+R L
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus
norvegicus GN=Smc3 PE=1 SV=1
Length = 1191
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSL 165
++I+E ++ + ET EE G++ L Q+R L
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1
Length = 298
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 82 NNLKNEVKR----VTSGNVNQAARDELLESGMADAMMVSADQ---RGRLLMSTERLNHST 134
N K V+R +T ++ D L+ SG ++ + A Q RG++L + +
Sbjct: 146 NEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERH 205
Query: 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLI 179
D +KE + +LE ++ + + + Q Q L + + V +SS +
Sbjct: 206 DAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFV 250
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 73 KLREYKTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTER 129
++RE K+ ++ +K E ++++S + Q + EL + D + +++QR RLL ++
Sbjct: 273 QVRELKSKISAMKEEKEQLSSERQEQIKQRTKLELKTKDLQDELAGNSEQRKRLLKERQK 332
Query: 130 LNHSTDRIKESRRTMLETEELGVSILQ 156
L ++I+E ++ + ETE S+ Q
Sbjct: 333 L---LEKIEEKQKELAETEPKFSSVKQ 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,784,197
Number of Sequences: 539616
Number of extensions: 2207481
Number of successful extensions: 8964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 8878
Number of HSP's gapped (non-prelim): 253
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)