Query 028804
Match_columns 203
No_of_seqs 111 out of 386
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 5.7E-45 1.2E-49 290.4 20.2 180 1-180 1-180 (220)
2 PF05008 V-SNARE: Vesicle tran 99.7 5.2E-17 1.1E-21 113.1 11.8 79 12-90 1-79 (79)
3 KOG3251 Golgi SNAP receptor co 99.5 7.4E-13 1.6E-17 106.8 15.3 166 1-177 1-171 (213)
4 PF12352 V-SNARE_C: Snare regi 99.1 2E-10 4.3E-15 77.2 4.8 55 128-182 1-55 (66)
5 KOG3208 SNARE protein GS28 [In 99.0 1.4E-08 3E-13 82.3 13.8 189 1-198 3-230 (231)
6 KOG3065 SNAP-25 (synaptosome-a 97.5 0.00035 7.5E-09 59.4 7.6 83 119-202 62-145 (273)
7 KOG3202 SNARE protein TLG1/Syn 97.4 0.029 6.2E-07 46.8 17.5 192 4-198 8-226 (235)
8 PF03908 Sec20: Sec20; InterP 97.0 0.0012 2.7E-08 47.0 4.6 49 132-180 5-53 (92)
9 smart00397 t_SNARE Helical reg 96.2 0.016 3.5E-07 37.6 5.6 56 128-183 5-60 (66)
10 PF09753 Use1: Membrane fusion 94.6 1.4 3E-05 37.0 13.1 44 40-83 28-71 (251)
11 KOG1666 V-SNARE [Intracellular 94.5 2 4.4E-05 35.2 13.2 124 41-186 70-193 (220)
12 KOG0809 SNARE protein TLG2/Syn 94.2 3.3 7.2E-05 35.6 16.7 89 7-95 61-163 (305)
13 COG3883 Uncharacterized protei 90.2 9.3 0.0002 32.5 12.2 137 35-180 37-175 (265)
14 cd00193 t_SNARE Soluble NSF (N 90.1 0.91 2E-05 28.6 4.8 50 135-184 6-55 (60)
15 PF05739 SNARE: SNARE domain; 89.4 1.2 2.5E-05 28.8 5.0 49 135-183 4-52 (63)
16 KOG0811 SNARE protein PEP12/VA 88.7 14 0.00031 31.5 17.5 50 131-180 176-225 (269)
17 PF06160 EzrA: Septation ring 88.4 22 0.00048 33.4 15.7 166 9-177 251-421 (560)
18 PF06008 Laminin_I: Laminin Do 87.9 15 0.00033 30.8 16.2 41 119-159 183-223 (264)
19 PF12352 V-SNARE_C: Snare regi 85.0 4.5 9.7E-05 26.4 5.9 62 121-182 1-62 (66)
20 PF05667 DUF812: Protein of un 84.8 28 0.00061 33.1 13.2 61 121-189 471-531 (594)
21 PF07527 Hairy_orange: Hairy O 84.8 5.1 0.00011 24.1 5.6 42 6-47 1-42 (43)
22 PF12128 DUF3584: Protein of u 83.8 56 0.0012 33.7 17.3 22 3-24 373-394 (1201)
23 smart00511 ORANGE Orange domai 82.2 4.3 9.4E-05 24.6 4.6 43 6-48 1-43 (45)
24 TIGR00255 conserved hypothetic 81.2 35 0.00075 29.4 12.9 147 13-168 131-290 (291)
25 PF06008 Laminin_I: Laminin Do 80.9 32 0.0007 28.8 16.8 52 41-92 151-205 (264)
26 PRK11820 hypothetical protein; 80.7 36 0.00078 29.3 13.0 147 13-168 129-287 (288)
27 PRK15374 pathogenicity island 80.3 52 0.0011 30.9 13.8 77 5-86 122-200 (593)
28 PF00261 Tropomyosin: Tropomyo 80.3 27 0.00058 28.9 10.2 49 128-176 92-140 (237)
29 KOG4025 Putative apoptosis rel 80.2 15 0.00033 29.1 8.0 85 4-89 87-174 (207)
30 PF08702 Fib_alpha: Fibrinogen 79.1 27 0.00059 26.9 10.6 29 1-29 23-51 (146)
31 PF15188 CCDC-167: Coiled-coil 77.6 18 0.00039 25.4 7.0 58 37-94 6-65 (85)
32 PF10168 Nup88: Nuclear pore c 77.5 46 0.00099 32.4 12.0 28 67-94 634-661 (717)
33 PF10805 DUF2730: Protein of u 77.4 25 0.00054 25.5 8.2 57 35-91 34-91 (106)
34 PF03962 Mnd1: Mnd1 family; I 75.0 23 0.00049 28.5 8.0 61 31-91 64-129 (188)
35 PRK10780 periplasmic chaperone 73.4 41 0.00089 26.1 10.1 41 4-44 51-95 (165)
36 PRK11637 AmiB activator; Provi 73.2 70 0.0015 28.8 11.6 52 38-90 77-128 (428)
37 PF07889 DUF1664: Protein of u 72.7 39 0.00084 25.5 10.6 75 10-92 39-116 (126)
38 PF06696 Strep_SA_rep: Strepto 70.8 14 0.00031 19.8 4.2 22 69-90 2-23 (25)
39 KOG0812 SNARE protein SED5/Syn 70.7 70 0.0015 27.6 18.3 45 136-180 228-272 (311)
40 COG4575 ElaB Uncharacterized c 70.2 26 0.00057 25.5 6.5 19 67-85 43-61 (104)
41 TIGR01069 mutS2 MutS2 family p 69.9 57 0.0012 32.0 10.8 85 4-89 505-589 (771)
42 COG5074 t-SNARE complex subuni 69.6 67 0.0015 27.0 15.5 43 136-178 186-228 (280)
43 KOG0250 DNA repair protein RAD 67.7 1.5E+02 0.0032 30.3 14.3 54 7-60 278-333 (1074)
44 PF04880 NUDE_C: NUDE protein, 67.2 11 0.00024 29.8 4.5 46 38-88 2-47 (166)
45 PF12128 DUF3584: Protein of u 67.1 1.6E+02 0.0035 30.4 16.3 21 73-93 772-792 (1201)
46 PF08181 DegQ: DegQ (SacQ) fam 66.9 16 0.00035 21.9 4.0 35 43-78 4-38 (46)
47 cd02682 MIT_AAA_Arch MIT: doma 65.4 41 0.00089 23.0 6.5 41 48-88 29-70 (75)
48 KOG3385 V-SNARE [Intracellular 64.6 16 0.00034 27.1 4.5 58 141-198 42-109 (118)
49 PF05659 RPW8: Arabidopsis bro 64.3 56 0.0012 25.1 7.9 49 35-91 65-113 (147)
50 PF09177 Syntaxin-6_N: Syntaxi 64.1 48 0.001 23.3 11.5 59 3-61 1-64 (97)
51 PF03938 OmpH: Outer membrane 62.8 65 0.0014 24.4 10.5 57 4-60 44-104 (158)
52 PRK04778 septation ring format 62.4 1.4E+02 0.003 28.1 14.8 82 9-93 255-338 (569)
53 PRK10807 paraquat-inducible pr 61.7 1.4E+02 0.0031 28.0 12.5 46 13-61 416-461 (547)
54 PF10458 Val_tRNA-synt_C: Valy 61.5 43 0.00093 21.9 7.4 34 58-91 32-65 (66)
55 KOG3046 Transcription factor, 60.5 47 0.001 25.5 6.6 54 32-85 8-61 (147)
56 PF05701 WEMBL: Weak chloropla 59.0 1.6E+02 0.0034 27.5 14.8 130 38-182 213-342 (522)
57 PF05335 DUF745: Protein of un 59.0 95 0.0021 25.0 11.3 49 133-181 114-162 (188)
58 KOG0810 SNARE protein Syntaxin 58.8 1.2E+02 0.0026 26.2 19.6 46 135-180 206-251 (297)
59 PF05546 She9_MDM33: She9 / Md 58.7 1E+02 0.0022 25.3 11.8 54 1-60 3-56 (207)
60 PF04697 Pinin_SDK_N: pinin/SD 58.3 5.4 0.00012 30.2 1.1 25 162-186 9-33 (134)
61 PF03233 Cauli_AT: Aphid trans 57.9 67 0.0015 25.3 7.2 48 43-90 111-160 (163)
62 PF10498 IFT57: Intra-flagella 57.6 1.4E+02 0.003 26.6 12.1 99 69-177 231-329 (359)
63 PRK10132 hypothetical protein; 55.5 79 0.0017 23.1 7.1 18 7-24 16-33 (108)
64 cd02677 MIT_SNX15 MIT: domain 55.3 63 0.0014 21.9 6.7 22 65-86 47-68 (75)
65 PRK14065 exodeoxyribonuclease 55.0 57 0.0012 22.8 5.7 52 11-62 26-79 (86)
66 PF07106 TBPIP: Tat binding pr 54.9 98 0.0021 24.0 10.8 56 37-94 80-138 (169)
67 PRK15422 septal ring assembly 54.8 68 0.0015 22.1 7.1 46 45-91 27-72 (79)
68 COG3074 Uncharacterized protei 54.8 64 0.0014 21.8 8.7 22 67-88 48-69 (79)
69 PF10805 DUF2730: Protein of u 54.5 74 0.0016 23.0 6.6 25 38-62 67-91 (106)
70 PF00261 Tropomyosin: Tropomyo 53.7 1.3E+02 0.0027 24.9 14.6 124 38-176 108-231 (237)
71 PF05667 DUF812: Protein of un 53.6 2.1E+02 0.0045 27.3 13.0 51 38-88 456-507 (594)
72 PF07106 TBPIP: Tat binding pr 53.4 77 0.0017 24.6 7.1 25 38-62 74-98 (169)
73 PRK10404 hypothetical protein; 52.9 84 0.0018 22.6 10.0 53 35-87 8-60 (101)
74 PF05957 DUF883: Bacterial pro 52.0 79 0.0017 22.0 7.9 49 7-55 2-50 (94)
75 PF06013 WXG100: Proteins of 1 51.9 64 0.0014 21.0 7.1 63 30-92 5-71 (86)
76 PF12998 ING: Inhibitor of gro 51.1 76 0.0016 22.2 6.3 41 41-81 31-73 (105)
77 KOG0995 Centromere-associated 50.9 2.2E+02 0.0049 26.9 12.6 54 39-92 255-314 (581)
78 TIGR02284 conserved hypothetic 50.1 1.1E+02 0.0024 23.1 11.7 121 41-174 5-137 (139)
79 PRK10929 putative mechanosensi 49.3 2.4E+02 0.0052 29.1 11.3 26 64-89 172-197 (1109)
80 PF05008 V-SNARE: Vesicle tran 49.0 60 0.0013 21.6 5.2 7 72-78 68-74 (79)
81 PF01627 Hpt: Hpt domain; Int 48.8 75 0.0016 20.9 10.0 82 3-84 1-87 (90)
82 PRK00409 recombination and DNA 48.7 2.1E+02 0.0046 28.2 10.7 23 67-89 572-594 (782)
83 cd07651 F-BAR_PombeCdc15_like 48.3 1.5E+02 0.0033 24.2 11.1 31 61-91 146-176 (236)
84 PF10174 Cast: RIM-binding pro 48.3 2.9E+02 0.0062 27.4 16.4 183 4-189 198-404 (775)
85 PF07851 TMPIT: TMPIT-like pro 48.0 2E+02 0.0042 25.4 10.5 82 5-91 6-87 (330)
86 PF00804 Syntaxin: Syntaxin; 47.7 88 0.0019 21.3 9.0 53 7-59 7-72 (103)
87 KOG0860 Synaptobrevin/VAMP-lik 47.6 41 0.00088 25.0 4.3 44 155-198 59-108 (116)
88 PRK13729 conjugal transfer pil 47.5 96 0.0021 28.7 7.5 56 35-91 68-123 (475)
89 PF05791 Bacillus_HBL: Bacillu 46.8 1.5E+02 0.0032 23.6 11.9 75 7-88 84-158 (184)
90 PF09748 Med10: Transcription 46.2 66 0.0014 24.1 5.4 49 42-90 2-51 (128)
91 PF04799 Fzo_mitofusin: fzo-li 46.2 1.3E+02 0.0027 24.0 7.1 52 37-88 114-167 (171)
92 PF00957 Synaptobrevin: Synapt 46.0 51 0.0011 22.7 4.5 34 138-171 6-39 (89)
93 KOG0161 Myosin class II heavy 45.9 4.5E+02 0.0098 29.0 17.0 70 117-186 1846-1915(1930)
94 COG5019 CDC3 Septin family pro 45.6 1.8E+02 0.004 26.0 8.8 45 43-91 324-368 (373)
95 PF08317 Spc7: Spc7 kinetochor 45.3 2.1E+02 0.0044 24.9 16.6 30 35-64 74-103 (325)
96 PF09738 DUF2051: Double stran 45.3 1.6E+02 0.0034 25.6 8.3 97 73-191 78-178 (302)
97 COG1256 FlgK Flagellar hook-as 45.1 2.7E+02 0.0059 26.3 10.4 76 12-91 109-189 (552)
98 PF14335 DUF4391: Domain of un 45.1 1.2E+02 0.0026 24.7 7.3 49 30-81 173-221 (221)
99 PF06160 EzrA: Septation ring 45.0 2.7E+02 0.0059 26.2 19.9 92 3-95 60-159 (560)
100 PF10146 zf-C4H2: Zinc finger- 44.9 1.8E+02 0.0039 24.2 10.0 48 37-92 54-101 (230)
101 PF09403 FadA: Adhesion protei 44.8 1.3E+02 0.0029 22.6 10.8 27 65-91 86-112 (126)
102 TIGR01843 type_I_hlyD type I s 44.2 2.2E+02 0.0048 24.9 17.8 7 102-108 185-191 (423)
103 PF14257 DUF4349: Domain of un 44.1 1.9E+02 0.0041 24.1 10.0 82 11-93 106-190 (262)
104 KOG3564 GTPase-activating prot 43.9 1.4E+02 0.003 27.9 7.9 37 41-78 68-104 (604)
105 PRK10404 hypothetical protein; 43.8 1.2E+02 0.0026 21.8 7.2 53 6-58 8-60 (101)
106 PRK04778 septation ring format 43.7 2.8E+02 0.0062 26.0 17.6 16 152-167 482-497 (569)
107 PF04212 MIT: MIT (microtubule 43.7 89 0.0019 20.2 6.5 44 41-87 25-68 (69)
108 PF04111 APG6: Autophagy prote 43.3 85 0.0018 27.3 6.4 18 4-21 10-27 (314)
109 PF13864 Enkurin: Calmodulin-b 43.1 74 0.0016 22.5 5.1 55 29-90 37-92 (98)
110 PF09177 Syntaxin-6_N: Syntaxi 42.7 1.2E+02 0.0025 21.3 8.1 56 38-93 7-67 (97)
111 smart00745 MIT Microtubule Int 42.3 99 0.0021 20.4 6.1 28 63-90 47-74 (77)
112 PF13801 Metal_resist: Heavy-m 42.2 1.2E+02 0.0025 21.2 8.9 65 4-68 53-124 (125)
113 PF08317 Spc7: Spc7 kinetochor 42.2 2.3E+02 0.005 24.6 17.7 45 48-92 192-236 (325)
114 PF06657 Cep57_MT_bd: Centroso 41.7 1.1E+02 0.0025 20.9 7.3 39 3-41 17-59 (79)
115 PF11621 Sbi-IV: C3 binding do 41.7 99 0.0021 20.2 6.7 24 56-79 37-60 (69)
116 PF02388 FemAB: FemAB family; 41.2 1.6E+02 0.0035 26.4 8.1 52 36-92 242-293 (406)
117 PRK12806 flagellin; Provisiona 40.9 2.5E+02 0.0054 26.0 9.3 53 33-85 70-127 (475)
118 PF00038 Filament: Intermediat 40.8 2.2E+02 0.0049 24.0 12.0 22 39-60 212-233 (312)
119 cd07669 BAR_SNX33 The Bin/Amph 40.3 77 0.0017 26.0 5.3 57 38-94 7-63 (207)
120 cd07668 BAR_SNX9 The Bin/Amphi 40.1 78 0.0017 26.0 5.3 57 38-94 7-63 (210)
121 PF04156 IncA: IncA protein; 39.7 1.8E+02 0.004 22.7 10.6 28 65-92 123-150 (191)
122 PF04111 APG6: Autophagy prote 39.5 2.5E+02 0.0055 24.3 11.0 26 67-92 45-70 (314)
123 KOG0946 ER-Golgi vesicle-tethe 39.5 4E+02 0.0088 26.6 15.0 20 8-27 616-635 (970)
124 PF06005 DUF904: Protein of un 39.5 1.2E+02 0.0026 20.5 7.4 22 39-60 7-28 (72)
125 PF09006 Surfac_D-trimer: Lung 39.4 93 0.002 19.2 4.7 33 68-108 2-34 (46)
126 PF01496 V_ATPase_I: V-type AT 38.3 1.8E+02 0.004 28.3 8.5 75 9-88 203-277 (759)
127 KOG2129 Uncharacterized conser 37.4 3.3E+02 0.0072 25.0 10.3 25 69-93 250-274 (552)
128 PF08855 DUF1825: Domain of un 37.2 1.7E+02 0.0036 21.5 9.4 49 10-58 15-63 (108)
129 PRK14082 hypothetical protein; 36.9 98 0.0021 20.5 4.4 42 6-47 5-47 (65)
130 PF01765 RRF: Ribosome recycli 36.9 2E+02 0.0043 22.3 7.5 34 27-60 85-118 (165)
131 COG1196 Smc Chromosome segrega 36.2 5E+02 0.011 26.8 16.0 44 131-174 873-916 (1163)
132 PRK10697 DNA-binding transcrip 36.1 68 0.0015 23.9 4.0 34 32-65 77-110 (118)
133 cd00520 RRF Ribosome recycling 35.8 1.5E+02 0.0032 23.5 6.3 35 26-60 98-132 (179)
134 PRK11281 hypothetical protein; 35.1 5.3E+02 0.012 26.7 16.2 24 68-91 124-147 (1113)
135 PRK13588 flagellin B; Provisio 35.0 3.4E+02 0.0074 25.4 9.3 55 33-87 70-129 (514)
136 PF07851 TMPIT: TMPIT-like pro 34.7 94 0.002 27.4 5.3 29 31-59 63-91 (330)
137 COG1561 Uncharacterized stress 34.6 3.1E+02 0.0066 23.8 13.8 30 139-168 260-289 (290)
138 PRK00083 frr ribosome recyclin 34.5 2.4E+02 0.0052 22.5 8.0 29 26-54 102-130 (185)
139 PRK13589 flagellin; Provisiona 34.4 3.6E+02 0.0079 25.6 9.3 55 33-87 70-129 (576)
140 PF11802 CENP-K: Centromere-as 34.3 3E+02 0.0064 23.6 9.8 87 4-91 86-173 (268)
141 cd07670 BAR_SNX18 The Bin/Amph 34.2 1.3E+02 0.0028 24.7 5.6 57 38-94 7-63 (207)
142 PF03904 DUF334: Domain of unk 34.0 2.8E+02 0.006 23.1 10.0 41 52-92 99-140 (230)
143 PF00435 Spectrin: Spectrin re 34.0 1.4E+02 0.0031 19.8 12.0 85 5-89 3-97 (105)
144 PRK03598 putative efflux pump 33.8 3E+02 0.0066 23.5 13.4 61 36-109 81-141 (331)
145 PF11460 DUF3007: Protein of u 33.7 1.1E+02 0.0024 22.3 4.7 36 4-42 67-103 (104)
146 TIGR03545 conserved hypothetic 33.7 2.6E+02 0.0057 26.4 8.4 22 6-27 167-188 (555)
147 PF03993 DUF349: Domain of Unk 33.2 1.4E+02 0.003 19.5 6.5 48 9-63 4-51 (77)
148 PF07361 Cytochrom_B562: Cytoc 33.1 1.8E+02 0.004 20.8 6.9 20 41-60 58-77 (103)
149 PRK11546 zraP zinc resistance 32.8 2.3E+02 0.005 21.8 8.3 17 69-85 93-109 (143)
150 TIGR03185 DNA_S_dndD DNA sulfu 32.3 4.5E+02 0.0098 25.1 10.9 84 10-94 205-291 (650)
151 PF10146 zf-C4H2: Zinc finger- 32.0 3E+02 0.0065 22.9 13.3 50 43-93 25-74 (230)
152 PF03962 Mnd1: Mnd1 family; I 31.9 2.7E+02 0.0058 22.3 12.2 62 30-92 101-162 (188)
153 cd07626 BAR_SNX9_like The Bin/ 31.7 1.3E+02 0.0028 24.4 5.4 52 41-92 2-53 (199)
154 TIGR00496 frr ribosome recycli 31.4 2.6E+02 0.0057 22.1 8.0 35 26-60 93-127 (176)
155 PRK05729 valS valyl-tRNA synth 31.2 2.8E+02 0.006 27.6 8.6 55 37-91 816-872 (874)
156 KOG0161 Myosin class II heavy 31.2 7.6E+02 0.017 27.3 15.6 27 66-92 1626-1652(1930)
157 KOG0612 Rho-associated, coiled 31.2 6.4E+02 0.014 26.5 15.9 58 117-174 573-630 (1317)
158 PF04728 LPP: Lipoprotein leuc 31.0 1.1E+02 0.0023 19.8 3.8 25 68-92 13-37 (56)
159 COG4190 Predicted transcriptio 30.4 98 0.0021 23.7 4.1 12 80-91 91-102 (144)
160 COG4477 EzrA Negative regulato 30.1 4.8E+02 0.01 24.7 12.5 43 135-177 382-424 (570)
161 PF08581 Tup_N: Tup N-terminal 30.1 1.9E+02 0.004 19.9 9.4 70 3-81 4-73 (79)
162 PF15188 CCDC-167: Coiled-coil 29.9 2E+02 0.0043 20.2 7.3 26 65-90 43-68 (85)
163 TIGR02978 phageshock_pspC phag 29.8 99 0.0021 23.1 4.0 34 32-65 80-113 (121)
164 TIGR02436 conserved hypothetic 29.7 2.2E+02 0.0047 20.6 8.8 75 14-88 27-108 (111)
165 PRK10787 DNA-binding ATP-depen 29.1 2.5E+02 0.0054 27.7 7.7 62 115-176 175-245 (784)
166 PF06120 Phage_HK97_TLTM: Tail 28.9 3.9E+02 0.0084 23.2 15.0 33 123-155 143-175 (301)
167 PRK10884 SH3 domain-containing 28.7 3.2E+02 0.007 22.2 9.5 21 180-200 172-192 (206)
168 PF06005 DUF904: Protein of un 28.1 1.9E+02 0.0042 19.4 9.8 22 1-22 1-23 (72)
169 PF10456 BAR_3_WASP_bdg: WASP- 27.9 2.1E+02 0.0046 23.9 6.1 60 35-94 33-92 (237)
170 PF14235 DUF4337: Domain of un 27.8 2.9E+02 0.0063 21.5 9.9 47 46-92 47-93 (157)
171 TIGR02680 conserved hypothetic 27.8 7.5E+02 0.016 26.2 16.8 159 1-180 225-385 (1353)
172 PRK09706 transcriptional repre 27.8 1.9E+02 0.0041 21.4 5.4 39 54-92 91-129 (135)
173 PF10779 XhlA: Haemolysin XhlA 27.7 1.9E+02 0.004 19.1 6.1 51 41-92 4-54 (71)
174 PRK10132 hypothetical protein; 27.5 2.5E+02 0.0054 20.5 7.5 51 33-83 13-63 (108)
175 PRK10884 SH3 domain-containing 27.4 3.4E+02 0.0074 22.1 10.8 10 42-51 124-133 (206)
176 PF13125 DUF3958: Protein of u 27.2 2.4E+02 0.0052 20.3 6.4 21 6-26 16-36 (99)
177 PF11221 Med21: Subunit 21 of 27.1 2.8E+02 0.0061 21.0 13.1 92 1-92 1-124 (144)
178 PRK08411 flagellin; Reviewed 27.0 5.6E+02 0.012 24.4 9.4 52 35-86 72-128 (572)
179 COG5509 Uncharacterized small 27.0 1.9E+02 0.0041 19.0 4.8 36 68-106 28-63 (65)
180 PF10280 Med11: Mediator compl 26.5 2.6E+02 0.0056 20.4 7.3 51 40-90 14-66 (117)
181 COG0233 Frr Ribosome recycling 26.3 3.1E+02 0.0067 22.1 6.5 34 27-60 105-138 (187)
182 TIGR01834 PHA_synth_III_E poly 26.3 4.5E+02 0.0097 23.1 8.4 29 65-93 289-317 (320)
183 KOG0250 DNA repair protein RAD 26.1 7.4E+02 0.016 25.5 14.9 43 138-180 758-800 (1074)
184 COG5278 Predicted periplasmic 26.0 3.7E+02 0.008 22.0 9.4 50 7-56 77-132 (207)
185 PLN02320 seryl-tRNA synthetase 25.9 4.9E+02 0.011 24.3 8.7 58 33-93 101-158 (502)
186 PF12709 Kinetocho_Slk19: Cent 25.6 1.5E+02 0.0032 20.9 4.0 35 59-93 36-70 (87)
187 KOG4674 Uncharacterized conser 25.4 9.3E+02 0.02 26.5 17.4 57 120-176 390-446 (1822)
188 PRK11637 AmiB activator; Provi 25.3 5E+02 0.011 23.3 18.3 21 70-90 101-121 (428)
189 PRK07191 flgK flagellar hook-a 25.1 5.3E+02 0.011 23.5 11.0 80 13-93 106-187 (456)
190 PRK12584 flagellin A; Reviewed 25.1 5.6E+02 0.012 23.9 8.9 54 33-86 70-128 (510)
191 PLN02943 aminoacyl-tRNA ligase 25.0 4.1E+02 0.009 26.9 8.6 55 38-92 891-951 (958)
192 PF04799 Fzo_mitofusin: fzo-li 24.8 3.6E+02 0.0078 21.5 7.3 57 36-92 106-164 (171)
193 KOG2150 CCR4-NOT transcription 24.8 6.1E+02 0.013 24.1 15.5 75 10-84 8-90 (575)
194 cd07625 BAR_Vps17p The Bin/Amp 24.8 4.1E+02 0.0088 22.1 8.4 51 38-88 159-209 (230)
195 PF11304 DUF3106: Protein of u 24.6 2.7E+02 0.0059 20.0 6.3 19 58-76 55-73 (107)
196 cd04779 HTH_MerR-like_sg4 Heli 24.5 3.1E+02 0.0067 20.6 6.5 8 45-52 59-66 (134)
197 PF11068 YlqD: YlqD protein; 24.3 3.2E+02 0.0068 20.7 8.2 33 30-62 14-46 (131)
198 PF10498 IFT57: Intra-flagella 24.3 5.1E+02 0.011 23.0 10.6 25 69-93 291-315 (359)
199 cd01145 TroA_c Periplasmic bin 24.3 2.7E+02 0.0059 22.1 6.1 48 46-93 115-162 (203)
200 PF14712 Snapin_Pallidin: Snap 24.2 2.4E+02 0.0052 19.3 9.9 26 67-92 59-84 (92)
201 PF07439 DUF1515: Protein of u 24.2 3E+02 0.0064 20.3 6.9 53 37-93 9-61 (112)
202 PRK10378 inactive ferrous ion 24.0 5.2E+02 0.011 23.2 8.2 75 12-87 291-371 (375)
203 PF08649 DASH_Dad1: DASH compl 23.9 2.1E+02 0.0046 18.5 4.8 29 120-151 18-46 (58)
204 PF08006 DUF1700: Protein of u 23.9 1.5E+02 0.0032 23.2 4.4 31 49-79 4-34 (181)
205 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.8 1.4E+02 0.0029 20.4 3.4 25 37-61 27-51 (79)
206 PRK00488 pheS phenylalanyl-tRN 23.6 5.2E+02 0.011 22.9 9.8 37 49-85 36-72 (339)
207 PRK08471 flgK flagellar hook-a 23.6 6.5E+02 0.014 24.0 13.6 88 64-175 131-219 (613)
208 KOG0933 Structural maintenance 23.3 8.4E+02 0.018 25.2 18.0 42 67-108 908-949 (1174)
209 PF06013 WXG100: Proteins of 1 23.3 2.1E+02 0.0046 18.3 7.5 25 3-27 14-38 (86)
210 PF11221 Med21: Subunit 21 of 23.2 3.4E+02 0.0073 20.6 8.4 50 4-53 66-121 (144)
211 PF03961 DUF342: Protein of un 23.0 5.7E+02 0.012 23.1 8.8 16 74-89 384-399 (451)
212 COG3074 Uncharacterized protei 22.9 2.5E+02 0.0054 19.0 7.2 24 37-60 5-28 (79)
213 PRK10929 putative mechanosensi 22.6 8.8E+02 0.019 25.2 16.9 42 51-92 188-235 (1109)
214 PRK15422 septal ring assembly 22.5 2.7E+02 0.0059 19.2 8.6 26 37-62 5-30 (79)
215 PF06305 DUF1049: Protein of u 22.3 1.4E+02 0.003 19.1 3.3 23 68-90 44-66 (68)
216 PF01297 TroA: Periplasmic sol 22.2 3.4E+02 0.0074 22.2 6.5 46 49-94 102-147 (256)
217 cd07685 F-BAR_Fes The F-BAR (F 21.9 4.8E+02 0.01 21.9 11.2 13 79-91 131-143 (237)
218 PF05478 Prominin: Prominin; 21.9 7.8E+02 0.017 24.3 17.1 45 128-172 335-380 (806)
219 PF03670 UPF0184: Uncharacteri 21.8 2.9E+02 0.0063 19.3 6.3 25 39-63 54-78 (83)
220 KOG2669 Regulator of nuclear m 21.8 5.6E+02 0.012 22.6 8.4 12 43-54 226-237 (325)
221 TIGR00606 rad50 rad50. This fa 21.8 9.4E+02 0.02 25.2 17.0 54 121-174 577-630 (1311)
222 PTZ00419 valyl-tRNA synthetase 21.4 4.3E+02 0.0092 26.8 7.9 54 39-92 932-991 (995)
223 KOG3366 Mitochondrial F1F0-ATP 21.4 4.2E+02 0.0092 21.1 8.9 18 38-55 89-106 (172)
224 PF00170 bZIP_1: bZIP transcri 21.3 2.3E+02 0.0051 18.0 5.0 20 68-87 43-62 (64)
225 PF10163 EnY2: Transcription f 21.1 2.9E+02 0.0062 19.0 9.2 30 48-77 54-84 (86)
226 PF11570 E2R135: Coiled-coil r 21.0 3.8E+02 0.0083 20.4 7.9 57 34-92 41-97 (136)
227 PF10234 Cluap1: Clusterin-ass 21.0 5.3E+02 0.011 22.0 9.6 56 37-93 163-218 (267)
228 TIGR02169 SMC_prok_A chromosom 20.9 8.6E+02 0.019 24.4 18.1 21 41-61 263-283 (1164)
229 cd07646 I-BAR_IMD_IRSp53 Inver 20.8 5E+02 0.011 21.7 8.6 35 57-92 107-141 (232)
230 PF05873 Mt_ATP-synt_D: ATP sy 20.8 1.5E+02 0.0031 23.2 3.7 14 72-85 110-123 (161)
231 smart00787 Spc7 Spc7 kinetocho 20.8 5.6E+02 0.012 22.2 16.0 40 52-91 191-230 (312)
232 PF15035 Rootletin: Ciliary ro 20.7 4.2E+02 0.009 21.1 6.3 23 66-88 17-39 (182)
233 PF04880 NUDE_C: NUDE protein, 20.6 2E+02 0.0043 22.7 4.4 46 5-55 2-47 (166)
234 PF06476 DUF1090: Protein of u 20.5 3.6E+02 0.0077 19.8 6.7 35 61-95 59-93 (115)
235 PF06698 DUF1192: Protein of u 20.4 2.6E+02 0.0056 18.2 4.3 26 68-93 24-49 (59)
236 PF02609 Exonuc_VII_S: Exonucl 20.3 2.3E+02 0.0049 17.5 7.1 46 14-59 3-50 (53)
237 PF04048 Sec8_exocyst: Sec8 ex 20.0 3.9E+02 0.0084 20.1 9.4 11 12-22 45-55 (142)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-45 Score=290.36 Aligned_cols=180 Identities=53% Similarity=0.738 Sum_probs=171.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~ 80 (203)
||++|+.||++|..+.++|+.+++.+++.++++|+..+++|+..++||+++|.||++||+.+||+.|..|..|+++||.+
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD 80 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 81 LNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ 160 (203)
Q Consensus 81 l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~ 160 (203)
+++|+.+++...+......+|++++++...++.+.+.+||++||++|++|++++++|.+|+|+|.|||+||.+|+++|++
T Consensus 81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~ 160 (220)
T KOG1666|consen 81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG 160 (220)
T ss_pred HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998855444568999998766666777899999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhccccccchhH
Q 028804 161 QRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 161 QRe~L~~~~~~l~~~d~~i~ 180 (203)
|||+|++++.+|+++|+++.
T Consensus 161 QRe~L~rar~rL~~td~~lg 180 (220)
T KOG1666|consen 161 QREQLERARERLRETDANLG 180 (220)
T ss_pred HHHHHHHHHHHHHhchhhhh
Confidence 99999999999999999776
No 2
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.74 E-value=5.2e-17 Score=113.13 Aligned_cols=79 Identities=38% Similarity=0.648 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 12 ~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
|..++++|.+++..+++.+|++|+..+++++..|+||+++|++|++|++++|++.|..|+.+|+.||+++++|+++|++
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999988899999999999999999999999999999999999999999999999999999999863
No 3
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7.4e-13 Score=106.80 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=133.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCCh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~-~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~ 79 (203)
|+.+|.+ .+..+++++..+..+++... .+-..++..++..|.++...|..|+.-+++.||+.|.+..-++.+.+.
T Consensus 1 m~~ly~~----t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~ 76 (213)
T KOG3251|consen 1 MDALYQS----TNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE 76 (213)
T ss_pred CchHHHH----HHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence 5556655 45667778888888876544 455678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC----ChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028804 80 DLNNLKNEVKRVTSGNV----NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSIL 155 (203)
Q Consensus 80 ~l~~l~~e~~~~~~~~~----~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il 155 (203)
++..++..++....... ...+|.+|++++|+...+......|..++.. .+|.+|++.+++.-.-|.+|+
T Consensus 77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~-------d~l~~s~~~lDd~l~~G~~il 149 (213)
T KOG3251|consen 77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQEN-------DSLKRSHNMLDDLLESGSAIL 149 (213)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhh-------hHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988876653 2346888988877654222222255566555 566899999999999999999
Q ss_pred HHHHHhhHHHHhhhhccccccc
Q 028804 156 QDLHQQRQSLLHAHNTVCPSSS 177 (203)
Q Consensus 156 ~~L~~QRe~L~~~~~~l~~~d~ 177 (203)
++|..||-.|.++++++.++-+
T Consensus 150 e~l~~Q~~~L~~~~~ki~~~~n 171 (213)
T KOG3251|consen 150 ENLVEQRLTLKGTQKKILDILN 171 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.07 E-value=2e-10 Score=77.18 Aligned_cols=55 Identities=31% Similarity=0.417 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
+.|.+++.+|.+|++++.||+++|.+|+.+|..||++|.+++++|.++++++...
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s 55 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKS 55 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3567788899999999999999999999999999999999999999999988743
No 5
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.4e-08 Score=82.26 Aligned_cols=189 Identities=24% Similarity=0.232 Sum_probs=131.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhc---------------CChH--HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASA---------------LDGE--LKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~---------------~~~~--~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p 63 (203)
|++-|+....+-..+=.++..+|..+.. ..+. .-+..-.+|+..|++..++.++|.- +-..|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence 4567888888888888888887765521 1121 2245678899999999999999988 44445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCc-c---cccHHHHHHHHhhhhhhhhhHHHHHH
Q 028804 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA-M---MVSADQRGRLLMSTERLNHSTDRIKE 139 (203)
Q Consensus 64 ~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~-~---~~~~~~r~~ll~~~~~L~~~~~~L~~ 139 (203)
.+ -...+..++.++.-|.....+|++.........+|..|+++.-.+. . .+...-++.+++.+ ..|++
T Consensus 82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~-------~~in~ 153 (231)
T KOG3208|consen 82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEH-------DHINN 153 (231)
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHh-------ccccc
Confidence 33 3566667777777777777777777665544457888876532221 0 11111235555555 45678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh---hc---------------ccchhhhhhhhhcc
Q 028804 140 SRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY---LG---------------GHGWCYKSLIFTCV 198 (203)
Q Consensus 140 s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~---~~---------------r~~~c~~~~~~~~~ 198 (203)
+.++++|...++.++.++|..||..+.++..+|.++..-++.. +. =++-|++.||||.+
T Consensus 154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999998744421 11 12559999999864
No 6
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00035 Score=59.36 Aligned_cols=83 Identities=16% Similarity=0.040 Sum_probs=62.9
Q ss_pred HHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccchhhhhhhhhc
Q 028804 119 QRGRLLM-STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWCYKSLIFTC 197 (203)
Q Consensus 119 ~r~~ll~-~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~c~~~~~~~~ 197 (203)
..+.|.+ .......+..+..++..++.|++..|..++..|..|+|+|.+|+..|+.++..+++- .|+..-+..+-=.|
T Consensus 62 ~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~-er~l~~l~~~~g~~ 140 (273)
T KOG3065|consen 62 EVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRA-ERNLTELKGLFGLL 140 (273)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHH-HHHHHHHHHHhccc
Confidence 3344443 333445777888899999999999999999999999999999999999999988865 44422222222288
Q ss_pred ccCCC
Q 028804 198 VAPWG 202 (203)
Q Consensus 198 ~~~~~ 202 (203)
+-||.
T Consensus 141 ~~p~~ 145 (273)
T KOG3065|consen 141 VKPFK 145 (273)
T ss_pred CCccc
Confidence 88986
No 7
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.029 Score=46.79 Aligned_cols=192 Identities=16% Similarity=0.173 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh----c-CC-hHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAAS----A-LD-GELKKQKLS-EIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKL 74 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~----~-~~-~~~r~~~i~-~i~~~l~ea~~~l~qme~Ev~~~--p~~~r~~~~~kv 74 (203)
.|.-|. +...+.+.++..+.... . .+ .++....++ .++..++..++.+.-++--.... |.-+-..=...+
T Consensus 8 ~~~v~~-e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i 86 (235)
T KOG3202|consen 8 FFRVKN-ETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFI 86 (235)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHH
Confidence 455555 78888888888876553 2 12 223444555 66666666666555554433332 222233333456
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCC---c----ccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 028804 75 REYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMAD---A----MMVSADQRGRLLMSTERLNHSTDRIKESRRTMLET 147 (203)
Q Consensus 75 ~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~---~----~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Et 147 (203)
.+.+..+..++..+...... +...|+.|++....+ . .+..+.-.......+..++.....|......+.-.
T Consensus 87 ~~lr~q~~~~~~~~~~~~~~--~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rl 164 (235)
T KOG3202|consen 87 DNLRTQLRQMKSKMAMSGFA--NSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRL 164 (235)
T ss_pred HHHHHHHHHHHHHHHhhccc--cccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777662211 112477777532111 1 01111111111223455667778888888888888
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhccccccchhH--------Hhh---cccchhhhhhhhhcc
Q 028804 148 EELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV--------VYL---GGHGWCYKSLIFTCV 198 (203)
Q Consensus 148 e~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~--------~~~---~r~~~c~~~~~~~~~ 198 (203)
-.+|..|-++|..|..-|..-...++.|++-+. |+- ++..||.+.++|..+
T Consensus 165 k~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~ 226 (235)
T KOG3202|consen 165 KGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLL 226 (235)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 999999999999999999987777777766333 221 233678777766543
No 8
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.01 E-value=0.0012 Score=47.00 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 132 ~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
..+..|.++++.+.+.-+-|...++.|..|.++|..+++.+.+.++.+.
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~ 53 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLK 53 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999988665
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=96.23 E-value=0.016 Score=37.64 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=50.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhh
Q 028804 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYL 183 (203)
Q Consensus 128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~ 183 (203)
..+......|.+....+.++.++|..|...+..|.+.|.++...+..++.+++.-.
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666778899999999999999999999999999999999999999998887543
No 10
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=94.59 E-value=1.4 Score=36.99 Aligned_cols=44 Identities=5% Similarity=0.081 Sum_probs=30.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 40 EIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 40 ~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
.++..+..++++|.+++.+....++..=.+|..||..++.-+..
T Consensus 28 rl~~yv~~L~~~l~~L~~~~~~~s~e~l~eY~~ri~~Lk~l~~~ 71 (251)
T PF09753_consen 28 RLEKYVETLREMLEELEESLSKPSKEVLNEYSERIDFLKGLIEA 71 (251)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 46777888888888888886655555556777777776655543
No 11
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=2 Score=35.17 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=77.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHH
Q 028804 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r 120 (203)
+..+|.+.+.-++++..|++..| +.+.... +.+.+-..+.. .........|..|+.+ -
T Consensus 70 ~~~KlR~yksdl~~l~~e~k~~~-~~~~~~~--------~rde~~~~~~a-dd~~~~~dQR~rLl~n------------T 127 (220)
T KOG1666|consen 70 YLSKLREYKSDLKKLKRELKRTT-SRNLNAG--------DRDELLEALEA-DDQNISADQRARLLQN------------T 127 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccccccc--------hHHHHHhhhhc-cccccchhHHHHHHhh------------h
Confidence 44566667777777777777666 1111110 00011111100 0000112467777743 2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
++|-+.++++..+-+-..++.++..+.-+==..=-+.|.+=|+.|..+.+.|.....-++.++.|.
T Consensus 128 erLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~ 193 (220)
T KOG1666|consen 128 ERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRL 193 (220)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHH
Confidence 567778888888888889999988887654455578899999999999999988887777666544
No 12
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=3.3 Score=35.60 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh---------hcCC-hHHHHH----HHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028804 7 GYERQYCELSAGLSRKCTAA---------SALD-GELKKQ----KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLS 72 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l---------~~~~-~~~r~~----~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~ 72 (203)
.-.+|....+..|+.+++.+ |+.+ +.+... +-..|-..|..++..|....--.+..|++++.-..+
T Consensus 61 d~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n 140 (305)
T KOG0809|consen 61 DVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKN 140 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34566777777777777655 4432 111122 223445555666666666655555667777665556
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 028804 73 KLREYKTDLNNLKNEVKRVTSGN 95 (203)
Q Consensus 73 kv~~yk~~l~~l~~e~~~~~~~~ 95 (203)
=...|=..+..+..+|+.+++.+
T Consensus 141 ~~~~la~~LQ~~s~~fR~~Qs~Y 163 (305)
T KOG0809|consen 141 AQGYLALQLQTLSREFRGLQSKY 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777766553
No 13
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.25 E-value=9.3 Score=32.49 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=83.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCc--
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA-- 112 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~-- 112 (203)
...+.+++.....+..-|+.|+-.+..+. +.......++.+.+.+++.++.++..+... ..+|.++|..+.+.-
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~-~k~~~~~~~i~~~~~eik~l~~eI~~~~~~---I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQ-SKIDELQKEIDQSKAEIKKLQKEIAELKEN---IVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666554 346778888888888888888888877654 368888886542211
Q ss_pred ccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 113 MMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 113 ~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.+.+..+-+-++. ...+..-..++.-...|+. --.+|++++......|+.....|.+.-..+.
T Consensus 113 nG~~t~Yidvil~-SkSfsD~IsRvtAi~~iv~----aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~ 175 (265)
T COG3883 113 NGTATSYIDVILN-SKSFSDLISRVTAISVIVD----ADKKILEQQKEDKKSLEEKQAALEDKLETLV 175 (265)
T ss_pred cCChhHHHHHHHc-cCcHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344555553 3444444444444444442 2356777777777777776666655544433
No 14
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=90.05 E-value=0.91 Score=28.58 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhc
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLG 184 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~ 184 (203)
..|......+.+...++..|...+..|.+.|.++...+..+...++.-..
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~ 55 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANK 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888999999999999999999999999999999888775443
No 15
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=89.39 E-value=1.2 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhh
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYL 183 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~ 183 (203)
+.|......+.+..+++..|-..+..|.+.|.++.+.+..+...+..-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~ 52 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGN 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999999999999998877543
No 16
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.72 E-value=14 Score=31.50 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 131 ~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
+.-.+.+.+.++-+.|.++|=.+...=-+.|.+.+..|...|..+..++.
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 33444555556666666555555555567899999999999888887555
No 17
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.43 E-value=22 Score=33.39 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Q 028804 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 9 e~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
+.++..+-+++...+..|..+.-+.-...+..+...|++ +-..|+-|+..-+. .....+...+...+.....|..
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~---lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQ---LYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444444444444444433 33445555553321 2233444555555555555555
Q ss_pred HHHHHhccCC---ChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 028804 87 EVKRVTSGNV---NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQ 163 (203)
Q Consensus 87 e~~~~~~~~~---~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe 163 (203)
++..++.+.. ...++-.-+......-........+.+-.+...-..-...+......+.+.+.-=..+.+.|..=|.
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544431 0001111111000000000001111111122222222344445555555555555555556665555
Q ss_pred HHHhhhhccccccc
Q 028804 164 SLLHAHNTVCPSSS 177 (203)
Q Consensus 164 ~L~~~~~~l~~~d~ 177 (203)
.=..|+.+|.....
T Consensus 408 dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 408 DEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666665554
No 18
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.92 E-value=15 Score=30.84 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLH 159 (203)
Q Consensus 119 ~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~ 159 (203)
-++.|-+....|...-..|++|...+.+++.+=..+-..|.
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE 223 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666655554444443
No 19
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=85.00 E-value=4.5 Score=26.40 Aligned_cols=62 Identities=24% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
++|++.++.|+++...+.++..++.+|-.-=..=-+.|..=+.++..+...|..++..|+..
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I 62 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI 62 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35677777888888888888888877766545555677777778888877777777666544
No 20
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.81 E-value=28 Score=33.10 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=40.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccchh
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWC 189 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~c 189 (203)
.+|....+++.+...+-.=++||. .|..|++.|++-|.++-...+.+...|-...||..++
T Consensus 471 ~qL~~e~e~~~k~~~Rs~Yt~RIl--------EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 471 KQLVKELEKLPKDVNRSAYTRRIL--------EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555544444555554 6778899999999998888888887777776665443
No 21
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=84.75 E-value=5.1 Score=24.07 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHH
Q 028804 6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDD 47 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~e 47 (203)
+.|..-|...+.+|.+-|...++.++.-+..++..+...+.+
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~ 42 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQ 42 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcC
Confidence 478999999999999999999887777777888877766554
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.84 E-value=56 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 028804 3 QVFEGYERQYCELSAGLSRKCT 24 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~ 24 (203)
+.+.+.+..|......+.....
T Consensus 373 ~~~~di~~ky~~~~~~l~~~~~ 394 (1201)
T PF12128_consen 373 SKHQDIESKYNKLKQKLEEAFN 394 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 23
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=82.22 E-value=4.3 Score=24.56 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHH
Q 028804 6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDA 48 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea 48 (203)
++|..-|...+.++.+-|...+..+++.+..++..+...+.+.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~ 43 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQL 43 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Confidence 3688899999999999999998877778888888887665543
No 24
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=81.20 E-value=35 Score=29.43 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHH--HHHHHHHH
Q 028804 13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYK-TDL--NNLKNEVK 89 (203)
Q Consensus 13 ~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk-~~l--~~l~~e~~ 89 (203)
..+..-+...|..+......+-..+..++...++..+.++.+++--+...+...|..+..|+..+- ..+ ..+..++-
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qEva 210 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQEAA 210 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 466677777777776555556677888999999999999999988888888888899999988875 122 23555543
Q ss_pred HHhccCC--ChHhh--------HHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 90 RVTSGNV--NQAAR--------DELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLH 159 (203)
Q Consensus 90 ~~~~~~~--~~~~R--------~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~ 159 (203)
-...+.. ++-.| .+++..+ ++-..--+-|+|.-.+=-+| -.|+-.-.+.-..+.++-..|.
T Consensus 211 l~adK~DI~EEl~RL~sHl~~f~~~L~~~-----~~vGrkLDFL~QEmnRE~NT----igSKs~d~~is~~vVe~K~eiE 281 (291)
T TIGR00255 211 LLAQRIDIAEEIDRLDSHVKEFYNILKKG-----EAVGRKLDFMMQELNRESNT----LASKAIDADITNLAVEMKVLIE 281 (291)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhcC-----CCcCcchhHHHHHHhHHHHH----HHHccCcHHHHHHHHHHHHHHH
Confidence 3322211 11111 1122211 11112223333321111111 2455566677888889999999
Q ss_pred HhhHHHHhh
Q 028804 160 QQRQSLLHA 168 (203)
Q Consensus 160 ~QRe~L~~~ 168 (203)
.=|||++++
T Consensus 282 kiREQVQNI 290 (291)
T TIGR00255 282 KIKEQIQNI 290 (291)
T ss_pred HHHHHHhcC
Confidence 999999875
No 25
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.88 E-value=32 Score=28.83 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 41 IKTGLDDADALIRKMDLEARSLQ---PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p---~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
++..+.+|+.+|..+.-++...- ..-...+...+.+|...|..++.-+..+.
T Consensus 151 Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 151 AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555543221 11134456666666666666666665554
No 26
>PRK11820 hypothetical protein; Provisional
Probab=80.67 E-value=36 Score=29.28 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 028804 13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN--NLKNEVKR 90 (203)
Q Consensus 13 ~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~--~l~~e~~~ 90 (203)
..+..-+...|..+......+-..+..++...++..+.++..++-.+...+...|..+..|+..+-..++ .|..|+--
T Consensus 129 ~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval 208 (288)
T PRK11820 129 AALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEVAL 208 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4555666666666655444555678888999999999999999888888888888888888888742222 23333322
Q ss_pred HhccCC--ChHhh--------HHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 91 VTSGNV--NQAAR--------DELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ 160 (203)
Q Consensus 91 ~~~~~~--~~~~R--------~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~ 160 (203)
...+.. ++-.| .+++..+ ++-..--+-|+|.-.+=-+| -.|+-.-.+.-+++.++-..|..
T Consensus 209 ~adK~DI~EEi~RL~sHl~~f~~~L~~~-----~~vGrkLDFL~QEm~RE~NT----igSKs~~~~is~~vVe~K~elEk 279 (288)
T PRK11820 209 LAQKADIAEELDRLKSHLKEFREILKKG-----GPVGRKLDFLMQELNREANT----LGSKSNDAEITNLVVELKVLIEQ 279 (288)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHhcC-----CCCCcchhHHHHHHhHHHHH----HHHccCcHHHHHHHHHHHHHHHH
Confidence 221110 00011 1122111 11112223333321111111 24555666777888888899999
Q ss_pred hhHHHHhh
Q 028804 161 QRQSLLHA 168 (203)
Q Consensus 161 QRe~L~~~ 168 (203)
=|||++++
T Consensus 280 iREQVQNI 287 (288)
T PRK11820 280 MREQVQNI 287 (288)
T ss_pred HHHHHhcC
Confidence 99998875
No 27
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=80.34 E-value=52 Score=30.92 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Q 028804 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLN 82 (203)
Q Consensus 5 fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~ 82 (203)
|..+-++|+..+...+..-+.+... ..-...++..+++|+..|+.++..+....| ..-.+.+..+.+-+.++.
T Consensus 122 ~~~lS~~ledaL~aaq~~ad~l~q~-----~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~l~~a~~av~~a~~~a~ 196 (593)
T PRK15374 122 GIQVSKEFQTALGEAQEATDLYEAS-----IKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEAT 196 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444321 112445777888888888888777776532 123333444444444444
Q ss_pred HHHH
Q 028804 83 NLKN 86 (203)
Q Consensus 83 ~l~~ 86 (203)
+...
T Consensus 197 ~a~~ 200 (593)
T PRK15374 197 EAKE 200 (593)
T ss_pred HHHH
Confidence 4443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.29 E-value=27 Score=28.94 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=21.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccccc
Q 028804 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSS 176 (203)
Q Consensus 128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d 176 (203)
++++.--..|..+...+.+++.-=..+..-|..-...|.++..++..+.
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E 140 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAE 140 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444555555555544444444444444444444444433333
No 29
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=80.19 E-value=15 Score=29.12 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHH---HHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAG---LSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~---i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~ 80 (203)
..+.||++|+.+-.. +...|++||.. =.+|+.-+..|..--..++.+|+-...--+-+|...+..+..+-+++-.=
T Consensus 87 ~v~r~E~~fqeLn~ka~aLk~iLSriPdE-inDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t~~~AvE~rKkEFVkY 165 (207)
T KOG4025|consen 87 IVSRYEQDFQELNKKAIALKRILSRIPDE-INDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLTAQPAVEKRKKEFVKY 165 (207)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHhCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 346688888887654 45567888762 24677766666655566667777777777778877777777776665544
Q ss_pred HHHHHHHHH
Q 028804 81 LNNLKNEVK 89 (203)
Q Consensus 81 l~~l~~e~~ 89 (203)
-+++...++
T Consensus 166 SK~FS~TLK 174 (207)
T KOG4025|consen 166 SKRFSNTLK 174 (207)
T ss_pred HHHHHHHHH
Confidence 444444443
No 30
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=79.12 E-value=27 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcC
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASAL 29 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~ 29 (203)
|.+++..|+.+|..-+++++..|..+.+.
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~ 51 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNS 51 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999988653
No 31
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=77.63 E-value=18 Score=25.39 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=45.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~--~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
-|..++.++.++..-|+.++.-.+. +|+..|..+.......+..+.+..++++.++..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3556777788888888888877775 467778888888888888888888888877653
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.45 E-value=46 Score=32.43 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
-.+|...++.++..+..++..+..++..
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777888888888777777776543
No 33
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.35 E-value=25 Score=25.50 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPN-VKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~-~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
+.-+..+...+++.+.=+..+|.++..+|.. .=+.++..+...+.+++.+...++.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456678888889999999999999999964 46677777777777777777777654
No 34
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.03 E-value=23 Score=28.50 Aligned_cols=61 Identities=20% Similarity=0.427 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSL-----QPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 31 ~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~-----p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
...+...+..+...+.++..-+..++-++... +...|..+..++.+++.++..|+.++...
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777777776666655533 34679999999999999999999999754
No 35
>PRK10780 periplasmic chaperone; Provisional
Probab=73.44 E-value=41 Score=26.15 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh----cCChHHHHHHHHHHHhh
Q 028804 4 VFEGYERQYCELSAGLSRKCTAAS----ALDGELKKQKLSEIKTG 44 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~----~~~~~~r~~~i~~i~~~ 44 (203)
.|..+..++...-.+++.....+. ..+..++...-+++...
T Consensus 51 ~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~ 95 (165)
T PRK10780 51 EFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQ 95 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 455555555555555555555442 23444444444444333
No 36
>PRK11637 AmiB activator; Provisional
Probab=73.19 E-value=70 Score=28.79 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
+..++..|..+..-|...+-++..+.. .-..+..++...+.+++..+..+..
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~-ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNK-QIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544332 2244445555555555555554433
No 37
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.67 E-value=39 Score=25.50 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhhhcCChHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 10 RQYCELSAGLSRKCTAASALDGELKK---QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 10 ~e~~~l~~~i~~~l~~l~~~~~~~r~---~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
..+...++.|...|.++...-...|+ ..|..++.+|++..++.+++.-||.. ++..+.+.+.+++.++.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~--------v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTE--------VREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHH
Confidence 44556666666666666432222232 45778889999999999999998854 44455666666666666
Q ss_pred HHHHHh
Q 028804 87 EVKRVT 92 (203)
Q Consensus 87 e~~~~~ 92 (203)
-+..+.
T Consensus 111 ~V~~Le 116 (126)
T PF07889_consen 111 MVEGLE 116 (126)
T ss_pred HHHHHH
Confidence 655544
No 38
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=70.84 E-value=14 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028804 69 MLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.|..++.+|..+|..+++....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 5788899999999999887654
No 39
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.71 E-value=70 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 136 ~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.+.+..-...|.-+|=.++..=...|+|.++|+.+.+++++.+|.
T Consensus 228 ~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~ 272 (311)
T KOG0812|consen 228 TMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIE 272 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence 344444445555555556666667899999999999999997665
No 40
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=70.16 E-value=26 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028804 67 KAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~ 85 (203)
|......+++-+..+...+
T Consensus 43 R~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 43 RSKAESALKEARDRLGDTG 61 (104)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3334444444444444443
No 41
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.93 E-value=57 Score=32.02 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
++...+.++..+++++...-..+... -++-....++++....+++...+.++-+-...-...+.+++.-+++.+.+.+.
T Consensus 505 ~~~~~~~~~~~li~~L~~~~~~~e~~-~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 505 FYGEFKEEINVLIEKLSALEKELEQK-NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655444321 01111222333333333333333333333333333344455555555555555
Q ss_pred HHHHHH
Q 028804 84 LKNEVK 89 (203)
Q Consensus 84 l~~e~~ 89 (203)
+-++++
T Consensus 584 ~i~~lk 589 (771)
T TIGR01069 584 IIRELK 589 (771)
T ss_pred HHHHHH
Confidence 555444
No 42
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=69.58 E-value=67 Score=27.00 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccch
Q 028804 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSL 178 (203)
Q Consensus 136 ~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~ 178 (203)
-|....+.++|.-++=+.+.+....|-+...-+.+.|.++..+
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n 228 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQEN 228 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhh
Confidence 3455666777777777888888888888888777777665543
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.74 E-value=1.5e+02 Score=30.27 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC--ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 7 GYERQYCELSAGLSRKCTAASAL--DGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l~~~--~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
.++.+++.+.+.|..+=.+.+++ .-+++...+..+..++.+.+.-+...-.|+.
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~ 333 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVD 333 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 45666666666655544333322 1223333344444444444444444444433
No 44
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=67.15 E-value=11 Score=29.77 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
+.+++.++..|-+=---||.|+ .+|..+.-.+..+|.|+.+|+.|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888777888888 568888888888888888888888
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=67.08 E-value=1.6e+02 Score=30.44 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 028804 73 KLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 73 kv~~yk~~l~~l~~e~~~~~~ 93 (203)
.|..|+.+++.|+++++.+..
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777776653
No 46
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=66.92 E-value=16 Score=21.90 Aligned_cols=35 Identities=11% Similarity=0.333 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028804 43 TGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYK 78 (203)
Q Consensus 43 ~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk 78 (203)
..|+|.+.+|=.+|.|++....+- ...+..+++|.
T Consensus 4 ~~ieelkqll~rle~eirett~sl-~ninksidq~d 38 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSL-RNINKSIDQYD 38 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHh
Confidence 467888999999999999876654 44566666654
No 47
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.39 E-value=41 Score=22.97 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 48 ADALIRKMDLEARSLQ-PNVKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 48 a~~~l~qme~Ev~~~p-~~~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
-.+.++.|--.++..| .+.+..|+.++.+|....+.|++.+
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666778877 4558889999999999999999875
No 48
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.60 E-value=16 Score=27.14 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhh----------cccchhhhhhhhhcc
Q 028804 141 RRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYL----------GGHGWCYKSLIFTCV 198 (203)
Q Consensus 141 ~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~----------~r~~~c~~~~~~~~~ 198 (203)
+.-+.-...+.-.|-.+.+.|-..|.+..+..+.+.+.+.--. |+..+|.+++.++++
T Consensus 42 ~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 42 QQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVA 109 (118)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3334444555578888899999999999999988887555222 355779877666554
No 49
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=64.29 E-value=56 Score=25.15 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
+..+..+...|.++.++ |..++...|-.+..+.+ |...+.++..++.+.
T Consensus 65 ~ee~e~L~~~L~~g~~L-------V~k~sk~~r~n~~kk~~-y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 65 QEEIERLKELLEKGKEL-------VEKCSKVRRWNLYKKPR-YARKIEELEESLRRF 113 (147)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHhccccHHHHHhhHh-HHHHHHHHHHHHHHH
Confidence 45566666666666666 44555544555554444 788888888888764
No 50
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=64.13 E-value=48 Score=23.34 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcC-----ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASAL-----DGELKKQKLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~-----~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
+.|-...+|....++.+...+...... +..+...+-+++...|++++.-|..++--|.-
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888877655321 22355667788889999999999998888775
No 51
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=62.85 E-value=65 Score=24.41 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh----cCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 4 VFEGYERQYCELSAGLSRKCTAAS----ALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~----~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
.|..+..++...-.+++.....+. ..+++++....++++.+..+.......+.-++.
T Consensus 44 ~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 44 KFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 234445555555555555555554444444433
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.37 E-value=1.4e+02 Score=28.10 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHH
Q 028804 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 9 e~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
+.++..+-++|...+..|.++.-+.-...+..+...|+..-+. |+-|+..-+. .....+...+...+.....+..
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~---lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDI---LEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333444444444333333 3333332221 1123344444444444444555
Q ss_pred HHHHHhc
Q 028804 87 EVKRVTS 93 (203)
Q Consensus 87 e~~~~~~ 93 (203)
++..+..
T Consensus 332 Ei~~l~~ 338 (569)
T PRK04778 332 EIDRVKQ 338 (569)
T ss_pred HHHHHHH
Confidence 5544443
No 53
>PRK10807 paraquat-inducible protein B; Provisional
Probab=61.74 E-value=1.4e+02 Score=28.03 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 13 ~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
..+.+++...++++...+- ..++..+..-|++++..+++++-.+..
T Consensus 416 ~~l~~~~~~il~kin~lpl---e~i~~~l~~tL~~~~~tl~~l~~~l~~ 461 (547)
T PRK10807 416 AQIQQKLMEALDKINNLPL---NPMIEQATSTLSESQRTMRELQTTLDS 461 (547)
T ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445544444444332 234556677777777777777666643
No 54
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.48 E-value=43 Score=21.91 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 58 EARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 58 Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.+..+|+.....-..++..|..++..+...+..+
T Consensus 32 F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 32 FVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557898888999999999999999998877654
No 55
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=60.47 E-value=47 Score=25.53 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
++-..-+..+++.+++.-+.+.++-+-|.++|+.....+..++..+-..+..+-
T Consensus 8 ~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~ 61 (147)
T KOG3046|consen 8 DQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLD 61 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhH
Confidence 344556778899999999999999999999998888999999999887776644
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.04 E-value=1.6e+02 Score=27.54 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=74.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSA 117 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~ 117 (203)
...++..+.+++.-+..|..++ .....+..++..-..++..|+.++....... +-... +......
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~-----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~--------l~~~~--~~~~~~~ 277 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL-----EAAKDLESKLAEASAELESLQAELEAAKESK--------LEEEA--EAKEKSS 277 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhH--Hhhhhhh
Confidence 3445555666666666666665 3345555666666666666666666554210 00000 0000111
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 118 ~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
.....+-..+.-|+.....|..+..=+......-..+-.+|...+.-|.+++.+.....+.+.-+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L 342 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSL 342 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 22233444555666666667666666666666667777888888888888888877776655433
No 57
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=58.96 E-value=95 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHH
Q 028804 133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVV 181 (203)
Q Consensus 133 ~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~ 181 (203)
-...|..+...+...+.+..+.-.+|..++.-|..++.||..+..++..
T Consensus 114 L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 114 LKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777888899999999999999999988887763
No 58
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.82 E-value=1.2e+02 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.-+.+-.+.+.|..++=..+..--..|.|.+.++...|..+..++.
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~ 251 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVE 251 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566677788888888888889999999999999988887555
No 59
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=58.70 E-value=1e+02 Score=25.30 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
+|..|+.|-++++.-+......++.+.+.+ .|..+...+.+.+.-|+....+++
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs------~Ie~LK~~i~~~E~~l~~~r~~~~ 56 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYS------EIEKLKKSIEELEDELEAARQEVR 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888776543 355566666666666555555554
No 60
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=58.31 E-value=5.4 Score=30.15 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=22.4
Q ss_pred hHHHHhhhhccccccchhHHhhccc
Q 028804 162 RQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 162 Re~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
.++|+.++..|..+|.+|+.++||-
T Consensus 9 q~qlE~Ake~Lk~vDenIkKltGRD 33 (134)
T PF04697_consen 9 QAQLEKAKESLKNVDENIKKLTGRD 33 (134)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhCCC
Confidence 4678899999999999999999976
No 61
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=57.92 E-value=67 Score=25.32 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 43 TGLDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 43 ~~l~ea~~~l~qme~Ev~~~p~~--~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
..|.++..-+..++-++..++.. ........|+.+..++..++..++.
T Consensus 111 ~~L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 111 PTLEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455666666666666532 2567777888888888888777764
No 62
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.63 E-value=1.4e+02 Score=26.57 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 028804 69 MLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete 148 (203)
.+...+...+..|++|..++.....+. ..|+.-+++.+. ...+..-..++.|.........+...+.+-.
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI---~sREk~iN~qle-------~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKI---ESREKYINNQLE-------PLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344445555666666666666554332 456666654321 2223333345555555555555555555555
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhccccccc
Q 028804 149 ELGVSILQDLHQQRQSLLHAHNTVCPSSS 177 (203)
Q Consensus 149 ~iG~~Il~~L~~QRe~L~~~~~~l~~~d~ 177 (203)
..=+.|.++|......|+.=...+.+..-
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 55566777777777777766666666554
No 63
>PRK10132 hypothetical protein; Provisional
Probab=55.53 E-value=79 Score=23.09 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028804 7 GYERQYCELSAGLSRKCT 24 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~ 24 (203)
....||..+++++...+.
T Consensus 16 ~L~~Dl~~L~~~le~ll~ 33 (108)
T PRK10132 16 DIQNDVNQLADSLESVLK 33 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 64
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.29 E-value=63 Score=21.87 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028804 65 NVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
..|..++.|+.+|-...+.+..
T Consensus 47 ~~k~~ir~K~~eYl~RAE~i~~ 68 (75)
T cd02677 47 ERREAVKRKIAEYLKRAEEILR 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554444443
No 65
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=55.02 E-value=57 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhh--cCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 11 QYCELSAGLSRKCTAAS--ALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 11 e~~~l~~~i~~~l~~l~--~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
.|..-++.+...|..+. ..+-++--.+-++.-..|.+|..+|+.-.+++..+
T Consensus 26 sFE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eAqk~LE~AkLe~~eI 79 (86)
T PRK14065 26 SFEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEYEKL 79 (86)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444554442 23333444444555555555666655555555443
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.91 E-value=98 Score=23.99 Aligned_cols=56 Identities=20% Similarity=0.456 Sum_probs=35.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSL---QPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~---p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
-+..+...+.+...-++.++.|+..+ |++ .++...+.+++.++..+...+..++..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35666666677777777777666654 332 456666666666666666666665543
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.79 E-value=68 Score=22.14 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 45 l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
|+|.++--..+.-|+..+. +.|..+..+-.+++.+-..++..++.+
T Consensus 27 ieELKekn~~L~~e~~~~~-~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQ-HQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433332 235666677777777777777666544
No 68
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.78 E-value=64 Score=21.80 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028804 67 KAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
|..+..+-.++|.+-..++..+
T Consensus 48 reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 48 REALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 69
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.46 E-value=74 Score=22.99 Aligned_cols=25 Identities=4% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
+..++-.+.+...-++.|+-.+..+
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555555555555433
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.67 E-value=1.3e+02 Score=24.87 Aligned_cols=124 Identities=12% Similarity=0.228 Sum_probs=70.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSA 117 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~ 117 (203)
..+++.+++++..=|..++.++..+.. .-.....++..+..++..+...++.+.........|. .
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEe-R~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re--------------~ 172 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEE-RAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE--------------D 172 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH--------------H
Confidence 334444444444444444444433221 1234456666666666666666665543211111222 2
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccccc
Q 028804 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSS 176 (203)
Q Consensus 118 ~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d 176 (203)
....++-.-+.+|..+-.+...+.+-+...+..=..+-.+|...++....+...|+.+=
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444566777777888888888877777777778888888888887777766553
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.57 E-value=2.1e+02 Score=27.34 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=31.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~-~~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
++.+...+..=++.++++.-|+.++|. ..|..|-.||-+.-.-+.+-+.++
T Consensus 456 ~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI 507 (594)
T PF05667_consen 456 IKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEI 507 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444456677777788888874 348888877766554444433333
No 72
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.37 E-value=77 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
+..++..+.+..+-+..+.-++..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555433
No 73
>PRK10404 hypothetical protein; Provisional
Probab=52.88 E-value=84 Score=22.62 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e 87 (203)
..+..++...+++++++++.-.-+...--...|..+...+...+..+..+...
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444455555555555444433332222333455555555555444444443
No 74
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=52.00 E-value=79 Score=22.01 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 028804 7 GYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKM 55 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qm 55 (203)
+...++..+.+++...+.......++.-..+-..+...++++.+-+..+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~ 50 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA 50 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655543333332333334444444444444433
No 75
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=51.95 E-value=64 Score=20.96 Aligned_cols=63 Identities=14% Similarity=0.321 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 30 ~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p----~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+++.-...+..+.....++++.+.+|+-.+..++ +..+..+.....++...+.++...|..+.
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~ 71 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELS 71 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777777777776653 33456666666666666666666665543
No 76
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=51.13 E-value=76 Score=22.17 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=18.0
Q ss_pred HHhhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHH
Q 028804 41 IKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDL 81 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~--~p~~~r~~~~~kv~~yk~~l 81 (203)
+...+.+++..+..+--...+ +|++.+..+..++...-..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ 73 (105)
T PF12998_consen 31 SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERA 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333 44445555555544433333
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.90 E-value=2.2e+02 Score=26.94 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 39 SEIKTGLDDADALIRKMDLEARSLQP------NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~~~p~------~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.....+++..++....|.--++++-. +.+..|-+++...+.++..-..+...++
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544332 2234455555555555555555555554
No 78
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=50.07 E-value=1.1e+02 Score=23.11 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-hHhhH----------HHhhcC
Q 028804 41 IKTGLDDADALIRKMDLEARSLQ-PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVN-QAARD----------ELLESG 108 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p-~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~-~~~R~----------~L~~~~ 108 (203)
+...|.-..+-+.-++--+..+. |..|..+.....++..-...|+..+...-..... ++-.. .+|+++
T Consensus 5 Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~~~ 84 (139)
T TIGR02284 5 LNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATLTPN 84 (139)
T ss_pred HHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHcCC
Confidence 34444444455555555555554 5567777777777777777777777655322210 00000 011110
Q ss_pred cCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccc
Q 028804 109 MADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCP 174 (203)
Q Consensus 109 ~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~ 174 (203)
....+| +.+.++-+.+....+-|.+..++...+..-|..|...+++.++.+..
T Consensus 85 ----------~d~aiL---~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 85 ----------DDYVVL---EEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred ----------ChHHHH---HHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 011222 23455666677777777777679999999999999999999988754
No 79
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.31 E-value=2.4e+02 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 64 PNVKAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 64 ~~~r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
++.+..++.+..-++..+..++.++.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666655554
No 80
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=48.99 E-value=60 Score=21.64 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 028804 72 SKLREYK 78 (203)
Q Consensus 72 ~kv~~yk 78 (203)
..+..++
T Consensus 68 ~~l~~lk 74 (79)
T PF05008_consen 68 SELKKLK 74 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 81
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=48.82 E-value=75 Score=20.87 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTG-----LDDADALIRKMDLEARSLQPNVKAMLLSKLREY 77 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~-----l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~y 77 (203)
++++.|.++....+..+...+..+...+.+.-...+..+... +..+..++.++|..++..+......+..-+...
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~~l 80 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLDEL 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 578889999999999999988544332333334444444443 345677788888888876543322344444444
Q ss_pred HHHHHHH
Q 028804 78 KTDLNNL 84 (203)
Q Consensus 78 k~~l~~l 84 (203)
...++.+
T Consensus 81 ~~~l~~l 87 (90)
T PF01627_consen 81 EAMLEQL 87 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 82
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.66 E-value=2.1e+02 Score=28.17 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
+.+++.-++..+.+...+-++++
T Consensus 572 ~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 572 EKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 83
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=48.35 E-value=1.5e+02 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 61 ~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.+++..-.++..++.....++...+.+|..+
T Consensus 146 ~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~ 176 (236)
T cd07651 146 LTWGKELEKNNAKLNKAQSSINSSRRDYQNA 176 (236)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555555555444
No 84
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.29 E-value=2.9e+02 Score=27.39 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCC-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----C--HHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALD-GELKKQKLSEIKTGLDDADALIRKMDLEARSL----Q--PNVKAMLLSKLRE 76 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~-~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~----p--~~~r~~~~~kv~~ 76 (203)
+.+.++.+...+-.++...+..-|... ...-+.+|..-+.++.+++.+|..++.|+..+ + ...|......+..
T Consensus 198 lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~ 277 (775)
T PF10174_consen 198 LLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEV 277 (775)
T ss_pred HHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 456666666666666666654444321 11225678888999999999999999998865 1 2346666666677
Q ss_pred HHHHHHHHHHHHHHHhccCCChHhhH-HHhh--cCcCCcccccHHHHHHHHhhhhh--------------hhhhHHHHHH
Q 028804 77 YKTDLNNLKNEVKRVTSGNVNQAARD-ELLE--SGMADAMMVSADQRGRLLMSTER--------------LNHSTDRIKE 139 (203)
Q Consensus 77 yk~~l~~l~~e~~~~~~~~~~~~~R~-~L~~--~~~~~~~~~~~~~r~~ll~~~~~--------------L~~~~~~L~~ 139 (203)
|+.....++..+..+.... +.++ ++++ ....+-.....+.|+++-...+. +++=...|.+
T Consensus 278 ~~s~~~~mK~k~d~~~~eL---~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 278 YKSHSLAMKSKMDRLKLEL---SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7666666665555444332 1111 2211 00000011122223333222111 1222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccchh
Q 028804 140 SRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGWC 189 (203)
Q Consensus 140 s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~c 189 (203)
.+.....-...-..+-.++....--|...++.++-.+.-|.++.+|+.++
T Consensus 355 k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~L 404 (775)
T PF10174_consen 355 KNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433444445555555555556666666666666666665443
No 85
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.02 E-value=2e+02 Score=25.41 Aligned_cols=82 Identities=7% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 028804 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNL 84 (203)
Q Consensus 5 fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l 84 (203)
+++.++||+.+-+.-..-..++.... ++...+-..|+.-..-++++...+..++++...+-...+++.+.++...
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~-----~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELS-----KLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Confidence 56667777776666555555554322 2222333444444444455555555554333334444455555555555
Q ss_pred HHHHHHH
Q 028804 85 KNEVKRV 91 (203)
Q Consensus 85 ~~e~~~~ 91 (203)
+..+..+
T Consensus 81 ~~~l~Dm 87 (330)
T PF07851_consen 81 RCQLFDM 87 (330)
T ss_pred HhhHHHH
Confidence 5444443
No 86
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.66 E-value=88 Score=21.33 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--------cCChH--HH---HHHHHHHHhhHHHHHHHHHHHHHHH
Q 028804 7 GYERQYCELSAGLSRKCTAAS--------ALDGE--LK---KQKLSEIKTGLDDADALIRKMDLEA 59 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l~--------~~~~~--~r---~~~i~~i~~~l~ea~~~l~qme~Ev 59 (203)
..-+++...++.|...+..|. ....+ .+ ..+..++...+..+..-|+.|+...
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666655551 11111 11 2355667777777777777777764
No 87
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.62 E-value=41 Score=25.02 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHhhhhccccccchhHHhh------cccchhhhhhhhhcc
Q 028804 155 LQDLHQQRQSLLHAHNTVCPSSSLIVVYL------GGHGWCYKSLIFTCV 198 (203)
Q Consensus 155 l~~L~~QRe~L~~~~~~l~~~d~~i~~~~------~r~~~c~~~~~~~~~ 198 (203)
|.+|.+--++|..+-+........++.-. -|+..|++++||+.|
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~i 108 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLVV 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666655555221 133445555555444
No 88
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.46 E-value=96 Score=28.70 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
+..+.+.+.+.++++.-|..+.-|+..+. ..+..+..+|+.+..+++.|+..++.+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~s-aq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLN-KQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777788888887777776665433 346678899999999999999998543
No 89
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=46.80 E-value=1.5e+02 Score=23.59 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 7 GYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
+|..-|..+...|...+ ...+.+.-...|..+...+.+-.+-...+-.++. .++..+....+.++.+...+..
T Consensus 84 ~Y~~~f~syY~~L~~~i---d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~----~f~~~l~~D~~~l~~~~~~l~~ 156 (184)
T PF05791_consen 84 NYNTTFQSYYDTLVEAI---DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELN----DFKDKLQKDSRNLKTDVDELQS 156 (184)
T ss_dssp HHHHHHHHHHHHHHHHH---HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHH
Confidence 45666666666666655 2223333334444444444444444444443333 3445555555555555444444
Q ss_pred HH
Q 028804 87 EV 88 (203)
Q Consensus 87 e~ 88 (203)
-+
T Consensus 157 ~l 158 (184)
T PF05791_consen 157 IL 158 (184)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 90
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.24 E-value=66 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=41.0
Q ss_pred HhhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 42 KTGLDDADALIRKMDLEARSLQ-PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 42 ~~~l~ea~~~l~qme~Ev~~~p-~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
+..|+++-+.|.++.+-|.... ++.+..+..++.++...|..+.+--..
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677888888999999999997 677899999999999988888766554
No 91
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.17 E-value=1.3e+02 Score=24.01 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~~--~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
+...++.-..+.++-|++|+-++..+... .-..+++|...+..+|+.+++.|
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555544321 12345555555555555555554
No 92
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=46.01 E-value=51 Score=22.66 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhc
Q 028804 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNT 171 (203)
Q Consensus 138 ~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~ 171 (203)
...+..+.++.++=..-++.+-...+.|+...++
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~k 39 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDKLLERGEKLEELEDK 39 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3444444444444444444444555555444443
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.86 E-value=4.5e+02 Score=28.98 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 117 ADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 117 ~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
.+.+......++.+++.+.++..=.+.+.|+|+..+..+...+.-.--++.+.++...+.+.+..+-+|+
T Consensus 1846 eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~ 1915 (1930)
T KOG0161|consen 1846 EEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKL 1915 (1930)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888999999999999999999999999999999999999999999999999888775554
No 94
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=45.61 E-value=1.8e+02 Score=26.01 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 43 TGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 43 ~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.++.+-++-++++|..+. ..+..|+.++..+..++..++..+...
T Consensus 324 ~ki~~~e~~l~~~E~~l~----~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 324 EKIREKEKRLEELEQNLI----EERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555666666666655 456666666666666666666655543
No 95
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.30 E-value=2.1e+02 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCH
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQP 64 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~ 64 (203)
...++++.+.|.+...+++++|.++..-||
T Consensus 74 ~~~c~EL~~~I~egr~~~~~~E~~~~~~nP 103 (325)
T PF08317_consen 74 QFSCRELKKYISEGRQIFEEIEEETYESNP 103 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 457899999999999999999999886543
No 96
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.28 E-value=1.6e+02 Score=25.63 Aligned_cols=97 Identities=14% Similarity=0.250 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC-ChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 028804 73 KLREYKTDLNNLKNEVKRVTSGNV-NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELG 151 (203)
Q Consensus 73 kv~~yk~~l~~l~~e~~~~~~~~~-~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG 151 (203)
.++.++..|..++..|++++..+. =..++..|++ +-+.|- +.|..-.+.+...++-.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y------------qvd~Lk---d~lee~eE~~~~~~re~------- 135 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY------------QVDLLK---DKLEELEETLAQLQREY------- 135 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH------------HHHHHH---HHHHHHHHHHHHHHHHH-------
Confidence 578889999999999998875430 0012222221 112221 22222223333333333
Q ss_pred HHHHHHHHHhhHHHHhhhhccccccchhH---Hhhcccchhhh
Q 028804 152 VSILQDLHQQRQSLLHAHNTVCPSSSLIV---VYLGGHGWCYK 191 (203)
Q Consensus 152 ~~Il~~L~~QRe~L~~~~~~l~~~d~~i~---~~~~r~~~c~~ 191 (203)
..=..+|..|+..+...+..+..+..+|+ -++-.||.+++
T Consensus 136 ~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 136 REKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 22344677888888888887777777766 44566665554
No 97
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=45.06 E-value=2.7e+02 Score=26.31 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhc--CChHHHHHHHHHHHhhHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 12 YCELSAGLSRKCTAASA--LDGELKKQKLSEIKTGLDDADALIRKMD---LEARSLQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 12 ~~~l~~~i~~~l~~l~~--~~~~~r~~~i~~i~~~l~ea~~~l~qme---~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
+...++++...+..+-. .+...|+.++..++......+++-++++ -.+. .+-...-.+|-+|-.++.+|.+
T Consensus 109 l~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~----~~I~~~V~~vNsLl~qIa~lN~ 184 (552)
T COG1256 109 LSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDIN----AEIAATVDEVNSLLKQIADLNK 184 (552)
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444421 1345677777666666555555544443 3333 2233344455555566666666
Q ss_pred HHHHH
Q 028804 87 EVKRV 91 (203)
Q Consensus 87 e~~~~ 91 (203)
.+.+.
T Consensus 185 qI~~~ 189 (552)
T COG1256 185 QIRKV 189 (552)
T ss_pred HHHHh
Confidence 66554
No 98
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=45.06 E-value=1.2e+02 Score=24.70 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 028804 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL 81 (203)
Q Consensus 30 ~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l 81 (203)
+-+++.....+++....++..+=+++.-|.+ .+.|.+++.++++++.++
T Consensus 173 ~~~~~~~~~~~i~~L~kei~~L~~~~~kEkq---~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIERLEQIEKLEKEIAKLKKKIKKEKQ---FNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcC
Confidence 3355555555565555555555555554443 578889998888877653
No 99
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.03 E-value=2.7e+02 Score=26.19 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHH----HHHHHHhhhhh----cCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELS----AGLSRKCTAAS----ALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKL 74 (203)
Q Consensus 3 ~~fe~ye~e~~~l~----~~i~~~l~~l~----~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv 74 (203)
+.|+.++.+|..+. .+|...+..+. ...--.-+..+..++..|+.+++-++.+.-++..+-.++ ..-...+
T Consensus 60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e-~~nr~~i 138 (560)
T PF06160_consen 60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE-EKNREEI 138 (560)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 47888888887776 33444443332 222223356778888888888888888888888775443 4455667
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 028804 75 REYKTDLNNLKNEVKRVTSGN 95 (203)
Q Consensus 75 ~~yk~~l~~l~~e~~~~~~~~ 95 (203)
..++..+..+++.+..-+...
T Consensus 139 ~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 139 EELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777776654443
No 100
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.86 E-value=1.8e+02 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=26.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.++.|..++...+..|++.+-|- ......+..+-.++..|+.++..+.
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er--------~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESER--------NKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655444 3444444444456666666665544
No 101
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.82 E-value=1.3e+02 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
-.|.+|+.-++.|+.-+++|.+++..-
T Consensus 86 ~yk~eYk~llk~y~~~~~~L~k~I~~~ 112 (126)
T PF09403_consen 86 WYKDEYKELLKKYKDLLNKLDKEIAEQ 112 (126)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999888654
No 102
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=44.16 E-value=2.2e+02 Score=24.89 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=3.4
Q ss_pred HHHhhcC
Q 028804 102 DELLESG 108 (203)
Q Consensus 102 ~~L~~~~ 108 (203)
..|+..|
T Consensus 185 ~~L~~~g 191 (423)
T TIGR01843 185 RKLKEKG 191 (423)
T ss_pred HHHHHcC
Confidence 3455544
No 103
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.05 E-value=1.9e+02 Score=24.07 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhh--cCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 11 QYCELSAGLSRKCTAAS--ALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL-QPNVKAMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 11 e~~~l~~~i~~~l~~l~--~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~-p~~~r~~~~~kv~~yk~~l~~l~~e 87 (203)
.|..+++.+. .++.+. +.+.++......+++.+|+..+...+++.--+... +...--++..++.+.+.+++.++..
T Consensus 106 ~~~~~l~~l~-~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 106 KFDSFLDELS-ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHh-ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 334442 34455666666778888888888887776666555 4677888899999999999999988
Q ss_pred HHHHhc
Q 028804 88 VKRVTS 93 (203)
Q Consensus 88 ~~~~~~ 93 (203)
++.+..
T Consensus 185 ~~~l~~ 190 (262)
T PF14257_consen 185 LKYLDD 190 (262)
T ss_pred HHHHHH
Confidence 887753
No 104
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.91 E-value=1.4e+02 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=15.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028804 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYK 78 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk 78 (203)
++-+|+.|...++ |+++.|......+..|..++...+
T Consensus 68 ldvklkha~~~vd-a~ik~rr~ae~d~~~~E~~i~~i~ 104 (604)
T KOG3564|consen 68 LDVKLKHARNQVD-AEIKRRRRAEADCEKLETQIQLIK 104 (604)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444432 334444333333444444444433
No 105
>PRK10404 hypothetical protein; Provisional
Probab=43.80 E-value=1.2e+02 Score=21.81 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028804 6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLE 58 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~E 58 (203)
+....|++.+++++...+..-....+++-..+=..++..|+++.+-+....-.
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45678888888888888876655555555556667778888887777665554
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.70 E-value=2.8e+02 Score=26.05 Aligned_cols=16 Identities=13% Similarity=0.327 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhHHHHh
Q 028804 152 VSILQDLHQQRQSLLH 167 (203)
Q Consensus 152 ~~Il~~L~~QRe~L~~ 167 (203)
..-+..|..|++-|..
T Consensus 482 ~~~~~~L~~q~~dL~~ 497 (569)
T PRK04778 482 TEDVETLEEETEELVE 497 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 107
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.65 E-value=89 Score=20.23 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e 87 (203)
++...+-++-++.-+..+ .++..|..+..++.+|....+.++.-
T Consensus 25 ~~~Y~~ai~~l~~~~~~~---~~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 25 LELYKEAIEYLMQALKSE---SNPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555544 34667888999999999998888764
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.31 E-value=85 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSR 21 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~ 21 (203)
+++.++.++.....+...
T Consensus 10 l~~~l~~~~~~~~~E~~~ 27 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDT 27 (314)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455554444444433
No 109
>PF13864 Enkurin: Calmodulin-binding
Probab=43.05 E-value=74 Score=22.48 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 29 LDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNV-KAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 29 ~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~-r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.+.++|..++..+... ..++.-|.+++|... -.....+-..+..+|..+.+++..
T Consensus 37 l~eeER~~lL~~Lk~~-------~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~ 92 (98)
T PF13864_consen 37 LSEEERQELLEGLKKN-------WDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKK 92 (98)
T ss_pred CCHHHHHHHHHHHHHH-------HHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777766655444 445555666666321 222333334444444444444443
No 110
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=42.67 E-value=1.2e+02 Score=21.32 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=43.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQ-----PNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p-----~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
-.+++..|+.++.++..........+ ...+..+..-+...+.+|..|.+.+.-+..
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888887777666 345788888899999999999988877653
No 111
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.35 E-value=99 Score=20.39 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 63 QPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 63 p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
++..+..+..++.+|....+.++..+.+
T Consensus 47 ~~~~~~~~~~k~~eyl~raE~lk~~~~~ 74 (77)
T smart00745 47 DSKRREAVKAKAAEYLDRAEEIKKSLLE 74 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667899999999999999999987753
No 112
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=42.25 E-value=1.2e+02 Score=21.20 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh------hcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAA------SALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL-QPNVKA 68 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l------~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~-p~~~r~ 68 (203)
++..|..++..+..++...-..+ ++.+++.-..+++++...-.+.....-.+-+++... +|.+|.
T Consensus 53 ~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 53 LMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 44555555555555555543333 233444445566666666666666666677777653 555443
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.23 E-value=2.3e+02 Score=24.57 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 48 a~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
--..+++..-|+..+++..=..++.++...+.++...++++..++
T Consensus 192 e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 192 ELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555655555555556665555555555555443
No 114
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=41.73 E-value=1.1e+02 Score=20.88 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH---hhhhhc-CChHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRK---CTAASA-LDGELKKQKLSEI 41 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~---l~~l~~-~~~~~r~~~i~~i 41 (203)
+++...++||..+.-+.+.. +..+.. .+...|+.+..++
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l 59 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQEL 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 45666666666666555555 555543 2333444444444
No 115
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=41.70 E-value=99 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=17.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Q 028804 56 DLEARSLQPNVKAMLLSKLREYKT 79 (203)
Q Consensus 56 e~Ev~~~p~~~r~~~~~kv~~yk~ 79 (203)
..||+.+|+..+..++..++++..
T Consensus 37 QR~VNK~~~D~~~~~QK~LD~i~A 60 (69)
T PF11621_consen 37 QREVNKAPMDSKNHFQKQLDQINA 60 (69)
T ss_dssp HHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHHHHhc
Confidence 468899999888888877777543
No 116
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.16 E-value=1.6e+02 Score=26.39 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=36.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..+..++..+.+++.-+..++..+...| ....+++++...++.+.+++..+.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888877777 555666666666666666665554
No 117
>PRK12806 flagellin; Provisional
Probab=40.89 E-value=2.5e+02 Score=26.02 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HHHhc----CCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMD-LEARS----LQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme-~Ev~~----~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
.-...++..+..|.++.++|.+|. +-++. ..+..|..+...+.+++.++..+-
T Consensus 70 dgis~lqtae~aL~~i~~iLqr~reLavqaaNgt~s~~dR~ai~~Ei~~L~~~i~~ia 127 (475)
T PRK12806 70 DGISLAQVAEGAMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIA 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888999999999995 55554 346778888888888777777665
No 118
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.79 E-value=2.2e+02 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=9.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh
Q 028804 39 SEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
..+...+.++...+..+..++.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~ 233 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELE 233 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhh
Confidence 3344444444444444444444
No 119
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=40.32 E-value=77 Score=25.99 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=45.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
..+++.+++....-+++|+--|..+-.-.....+.-+-.||.++.++-..|..+...
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~Lsqa 63 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHS 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988765555556666778888999988888776544
No 120
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=40.07 E-value=78 Score=26.00 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
..+++.+++....-+++|+--|+.+..-.....+.-+-.||.++.++-..|..+...
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsqa 63 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATV 63 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 457889999999999999999888765555566666778889999988888776544
No 121
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.66 E-value=1.8e+02 Score=22.70 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..+..+..++..++..++.+.+++..+.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666554
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.55 E-value=2.5e+02 Score=24.31 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
...+..++..++.+-..+..++..+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELE 70 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555543
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.48 E-value=4e+02 Score=26.62 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 028804 8 YERQYCELSAGLSRKCTAAS 27 (203)
Q Consensus 8 ye~e~~~l~~~i~~~l~~l~ 27 (203)
+.-+|..++.+....+.++-
T Consensus 616 lD~~f~kL~kele~~i~k~l 635 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLL 635 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34467888888888877663
No 124
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.45 E-value=1.2e+02 Score=20.46 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=10.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh
Q 028804 39 SEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
..++.++..|-+.|..+..|+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~e 28 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENE 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444
No 125
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=39.43 E-value=93 Score=19.22 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcC
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESG 108 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~ 108 (203)
+.++.++..+...+..|+..|...+ .-+||.+|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK--------Ka~lFp~G 34 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK--------KAELFPNG 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHTTTE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCCc
Confidence 3567777888888888888887643 45788654
No 126
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=38.31 E-value=1.8e+02 Score=28.29 Aligned_cols=75 Identities=9% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 9 e~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
++++..+++...-..-.+|.. .......+++++..++++++.+++.+-+.+.. ...+...+..+...+...+..+
T Consensus 203 ~~kv~~il~~~~f~~~~~p~~-~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~----~~~~~~~l~~~~~~l~~~~~~~ 277 (759)
T PF01496_consen 203 EEKVKKILRSFGFERYDLPED-EGTPEEAIKELEEEIEELEKELEELEEELKKL----LEKYAEELEAWYEYLRKEKEIY 277 (759)
T ss_dssp HHHHHHHHHTTT--B----GG-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCceecCCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444443344542 33456788899999999999999998888843 3334444555555554444333
No 127
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=37.41 E-value=3.3e+02 Score=25.00 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 69 MLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
.++.-++-+++++..|++.+..++.
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666554
No 128
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=37.20 E-value=1.7e+02 Score=21.51 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028804 10 RQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLE 58 (203)
Q Consensus 10 ~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~E 58 (203)
.++.....+|-.....++..+.+.|...|.+++..++.-+-..+++++.
T Consensus 15 ~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS 63 (108)
T PF08855_consen 15 QDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS 63 (108)
T ss_pred HHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455555667888899999988888888888888877777765
No 129
>PRK14082 hypothetical protein; Provisional
Probab=36.89 E-value=98 Score=20.54 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhcCChHHHHHHHHHHHhhHHH
Q 028804 6 EGYERQYCELSAGLSRKCT-AASALDGELKKQKLSEIKTGLDD 47 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~-~l~~~~~~~r~~~i~~i~~~l~e 47 (203)
.+++.++..+++.+.-++. .+.+++.++|..+.+++.-++=+
T Consensus 5 ~~~~~e~e~ii~~FepkIkKsL~~T~yqeREDLeQElk~Ki~e 47 (65)
T PRK14082 5 KDDTEEIEHLIENFSPMIKKKLSNTSYQEREDLEQELKIKIIE 47 (65)
T ss_pred hhhHHHHHHHHHHccHHHHHHHhcCChhhHHHHHHHHHHHHHH
Confidence 3577888889988888874 67778888998888777665543
No 130
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=36.87 E-value=2e+02 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.0
Q ss_pred hcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 27 SALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 27 ~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
|..+.+.|..+++.+....+++...|+....+..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~ 118 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAM 118 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888888776665544443
No 131
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.23 E-value=5e+02 Score=26.78 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccc
Q 028804 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCP 174 (203)
Q Consensus 131 ~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~ 174 (203)
......|........+.+.--......+...++.+.....++..
T Consensus 873 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 132
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=36.09 E-value=68 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHH
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN 65 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~ 65 (203)
+..+.++++++.+++.++.=|.+||--|-+-...
T Consensus 77 ~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~ 110 (118)
T PRK10697 77 PSSSELLDEVDRELAAGEQRLREMERYVTSDTFT 110 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 3556789999999999999999999999875543
No 133
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=35.82 E-value=1.5e+02 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=25.6
Q ss_pred hhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 26 ASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 26 l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
+|..+.+.|+.+++.+....++|...++....++.
T Consensus 98 iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~ 132 (179)
T cd00520 98 LPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDAN 132 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888999998888888887665444443
No 134
>PRK11281 hypothetical protein; Provisional
Probab=35.09 E-value=5.3e+02 Score=26.72 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.++.+++.+...++...+..+...
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666544
No 135
>PRK13588 flagellin B; Provisional
Probab=34.95 E-value=3.4e+02 Score=25.43 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMD-LEARS----LQPNVKAMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme-~Ev~~----~p~~~r~~~~~kv~~yk~~l~~l~~e 87 (203)
.-...+...+..|.++.++|.+|. +-+.. ..+..|..+...+.+++.++..+-+.
T Consensus 70 dgis~lqtae~aL~~i~~iLqrireLavqAaNgt~s~~dR~aiq~Ei~qL~~eI~~iant 129 (514)
T PRK13588 70 DAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANT 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334567788899999999999995 55554 34678999888888888777776543
No 136
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.70 E-value=94 Score=27.38 Aligned_cols=29 Identities=3% Similarity=0.164 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028804 31 GELKKQKLSEIKTGLDDADALIRKMDLEA 59 (203)
Q Consensus 31 ~~~r~~~i~~i~~~l~ea~~~l~qme~Ev 59 (203)
+.+....+++++..+.++...+..||..+
T Consensus 63 ~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 63 SAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 44556788999999999999999999665
No 137
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=34.55 E-value=3.1e+02 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 028804 139 ESRRTMLETEELGVSILQDLHQQRQSLLHA 168 (203)
Q Consensus 139 ~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~ 168 (203)
.|+-++.+.-..|.+.-..+..=|||++++
T Consensus 260 ~SKS~~~~it~~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 260 GSKSNAAEITAAVVELKVLIEQMREQVQNI 289 (290)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 678888899999999999999999999875
No 138
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=34.46 E-value=2.4e+02 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred hhcCChHHHHHHHHHHHhhHHHHHHHHHH
Q 028804 26 ASALDGELKKQKLSEIKTGLDDADALIRK 54 (203)
Q Consensus 26 l~~~~~~~r~~~i~~i~~~l~ea~~~l~q 54 (203)
+|..+.+-|+.+++.+....++|+..++.
T Consensus 102 iP~lT~E~R~elvK~~k~~~E~aKv~iRn 130 (185)
T PRK00083 102 IPPLTEERRKELVKQVKKEAEEAKVAIRN 130 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777888888888888888766543
No 139
>PRK13589 flagellin; Provisional
Probab=34.43 E-value=3.6e+02 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMD-LEARSL----QPNVKAMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme-~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~e 87 (203)
.-...++..+..|+++.++|.+|. +-++.. .+..|..+...+.+++.++..+-+.
T Consensus 70 dgiS~LQTAEgAL~ei~diLQRmRELAVQAANGT~S~~DR~AIq~El~qL~eeI~~IANt 129 (576)
T PRK13589 70 DAIGILQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANT 129 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335577888999999999999994 555543 3567999988888888887776653
No 140
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.32 E-value=3e+02 Score=23.55 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKL-REYKTDLN 82 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv-~~yk~~l~ 82 (203)
++.--.++|..+..++.-.++.+...+ +.-+.-+..-+.-|++..++++.|..-.+.+....+.....++ +..+..+.
T Consensus 86 L~~lgkeelqkl~~eLe~vLs~~q~Kn-ekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~ 164 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMVLSTVQSKN-EKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIE 164 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 028804 83 NLKNEVKRV 91 (203)
Q Consensus 83 ~l~~e~~~~ 91 (203)
+++.-...+
T Consensus 165 ~~k~~~e~L 173 (268)
T PF11802_consen 165 KIKEYKEKL 173 (268)
T ss_pred HHHHHHHHH
No 141
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.20 E-value=1.3e+02 Score=24.73 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
..+++.+++....-.++|+--|+.+-.-.....+.-+-.||.++.++-..|..+...
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsqa 63 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQA 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988765555666677788899999988888776544
No 142
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.00 E-value=2.8e+02 Score=23.13 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 52 IRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 52 l~qme~Ev~~~p~-~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
++-+.-++..+.. ..+..+...+..++.+++...++++.+.
T Consensus 99 ~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~ 140 (230)
T PF03904_consen 99 QDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSH 140 (230)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444432 3355666667677777777666666544
No 143
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=33.98 E-value=1.4e+02 Score=19.76 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---h-cCChHHH---HHHHHHHHhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 028804 5 FEGYERQYCELSAGLSRKCTAA---S-ALDGELK---KQKLSEIKTGLDDADALIRKMDLEARSL---QPNVKAMLLSKL 74 (203)
Q Consensus 5 fe~ye~e~~~l~~~i~~~l~~l---~-~~~~~~r---~~~i~~i~~~l~ea~~~l~qme~Ev~~~---p~~~r~~~~~kv 74 (203)
+..|..++..+..=|...-..+ + +.+.+.- ....+.++..+.....-+..+.-.+..+ ++.....+..++
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5566666666666666654444 2 1222222 2334445555555555555555444433 344567788888
Q ss_pred HHHHHHHHHHHHHHH
Q 028804 75 REYKTDLNNLKNEVK 89 (203)
Q Consensus 75 ~~yk~~l~~l~~e~~ 89 (203)
..+...+..|...+.
T Consensus 83 ~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 83 EELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777776664
No 144
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=33.79 E-value=3e+02 Score=23.50 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCc
Q 028804 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGM 109 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~ 109 (203)
..+...+..+..+...+.++....+ ..+-......+...+.++...++++.+ ...|+..|.
T Consensus 81 ~~l~~~~a~l~~~~~~l~~~~~~~~---~~~i~~~~~~l~~ak~~l~~a~~~~~r----------~~~L~~~g~ 141 (331)
T PRK03598 81 NALMQAKANVSVAQAQLDLMLAGYR---DEEIAQARAAVKQAQAAYDYAQNFYNR----------QQGLWKSRT 141 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHCCC
Confidence 3445555566666665555543332 122233444455555555555555543 235776654
No 145
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.74 E-value=1.1e+02 Score=22.29 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHH-HHHHhhhhhcCChHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAG-LSRKCTAASALDGELKKQKLSEIK 42 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~-i~~~l~~l~~~~~~~r~~~i~~i~ 42 (203)
-..+||+.+..+.++ +++ ++...+|++..++.++++
T Consensus 67 Q~k~Ye~a~~~~~~~~lqk---Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 67 QRKDYEEAVDQLTNEELQK---RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHhCCHHHHHHHHHHhc
Confidence 445666666555444 222 444556677666666554
No 146
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.73 E-value=2.6e+02 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 028804 6 EGYERQYCELSAGLSRKCTAAS 27 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~~l~ 27 (203)
+..+..+...-+........+|
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444
No 147
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=33.25 E-value=1.4e+02 Score=19.47 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 028804 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (203)
Q Consensus 9 e~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p 63 (203)
-..|..+++.+-.....+-.. .-...+.-+..-..+|.+++--+.+.+
T Consensus 4 w~~F~~a~~~~~~~~~~~~~~-------~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 4 WKRFRAACDAFFDRRKEFFEE-------QDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445666666666655544221 112233445555566666655454443
No 148
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=33.12 E-value=1.8e+02 Score=20.78 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=7.8
Q ss_pred HHhhHHHHHHHHHHHHHHHh
Q 028804 41 IKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~ 60 (203)
....++....-|...+-.|.
T Consensus 58 Y~~Gl~~li~~id~a~~~~~ 77 (103)
T PF07361_consen 58 YQEGLDKLIDQIDKAEALAE 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 149
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.80 E-value=2.3e+02 Score=21.83 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028804 69 MLLSKLREYKTDLNNLK 85 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~ 85 (203)
++..++..++..+...+
T Consensus 93 aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 93 AVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.26 E-value=4.5e+02 Score=25.06 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHHHHHHHHHH
Q 028804 10 RQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKA---MLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 10 ~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~---~~~~kv~~yk~~l~~l~~ 86 (203)
.+...-++++...+..+.. ..+.-...+..++..++++..-+...+.+.+........ .+..+++.++.++...++
T Consensus 205 ~~~~~~~~~le~el~~l~~-~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSE-KYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcc
Q 028804 87 EVKRVTSG 94 (203)
Q Consensus 87 e~~~~~~~ 94 (203)
.+......
T Consensus 284 ~l~~l~~~ 291 (650)
T TIGR03185 284 QLRELAAD 291 (650)
T ss_pred HHHHHhcc
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.02 E-value=3e+02 Score=22.88 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 43 TGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 43 ~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
..++.-+.+|.++.-|...+- .+|..+...+++..+|+..|...++.+..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~-~Er~~h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELL-QERMAHVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666665554 46888999999999999999999988763
No 152
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.91 E-value=2.7e+02 Score=22.27 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 30 ~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..++|..++.+++..-.+...+-.+++ .....+|..=..+...+..++..++.+-..+-.+.
T Consensus 101 ~~~eR~~~l~~l~~l~~~~~~l~~el~-~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 101 ESEEREELLEELEELKKELKELKKELE-KYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456888888887777777777777777 44455666667777777777777777777765554
No 153
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=31.74 E-value=1.3e+02 Score=24.41 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
++..++....-++.|+--|..+-.-...........||.++.++-..|..+.
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~ 53 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLG 53 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4566666777777777776666544444555556677777777777776664
No 154
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=31.40 E-value=2.6e+02 Score=22.09 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred hhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 26 ASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 26 l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
+|..+.+-|+.+++.+....++|...|+....+++
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~ 127 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDAN 127 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888876654444333
No 155
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=31.24 E-value=2.8e+02 Score=27.63 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 37 KLSEIKTGLDDADALIRKMDL--EARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~--Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
+.++++..-++++.+.+.+.. -+.++|+.....-+.|+.+|..++..++..+..+
T Consensus 816 L~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 816 LEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444433 3346898889999999999999999999887654
No 156
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.21 E-value=7.6e+02 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 66 VKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 66 ~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
....+...++.|...+..++.++..++
T Consensus 1626 ~~~d~~K~lkk~q~~~k~lq~~~e~~~ 1652 (1930)
T KOG0161|consen 1626 ANEDAQKQLKKLQAQLKELQRELEDAQ 1652 (1930)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356777778888888888888887765
No 157
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.17 E-value=6.4e+02 Score=26.45 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccc
Q 028804 117 ADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCP 174 (203)
Q Consensus 117 ~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~ 174 (203)
..+.+.++..+..+......|..+.....+-+.-....++..++|+-.+..+...+.+
T Consensus 573 ~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 573 SKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677777777777788888888888777777888888888888888776665544
No 158
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.95 E-value=1.1e+02 Score=19.77 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..++.+|.++..++..++.++..++
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665544
No 159
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=30.42 E-value=98 Score=23.70 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 028804 80 DLNNLKNEVKRV 91 (203)
Q Consensus 80 ~l~~l~~e~~~~ 91 (203)
+++++.+++..+
T Consensus 91 dv~nvhr~Ls~l 102 (144)
T COG4190 91 DVKNVHRTLSTL 102 (144)
T ss_pred chHHHHHHHHHH
Confidence 444455555444
No 160
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.15 E-value=4.8e+02 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccc
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSS 177 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~ 177 (203)
..|++....+.+.++=-..+.+.|.+=|.-=..|++.+....+
T Consensus 382 ~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~ 424 (570)
T COG4477 382 DNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKS 424 (570)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544455555555544443444444444444
No 161
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.12 E-value=1.9e+02 Score=19.92 Aligned_cols=70 Identities=9% Similarity=0.205 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL 81 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l 81 (203)
|+|+....||..+..++...=. .. ++=...+..--..+....+.+.+||..-. .-|..|...|..++.++
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~--~~---~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~----kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKH--QK---DEYEHKINSQIQEMQQIRQKVYELEQAHR----KMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5777777777777776655422 11 11011122222333444445555554433 34555555555554444
No 162
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.90 E-value=2e+02 Score=20.16 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.+...++.++..|..++..|+++=++
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 45566667777777777777766443
No 163
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=29.83 E-value=99 Score=23.08 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHH
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN 65 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~ 65 (203)
+..+.++++++..++.++.=|.+||--|-+-...
T Consensus 80 ~~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f~ 113 (121)
T TIGR02978 80 QSPRQALREVKREFRDLERRLRNMERYVTSDTFR 113 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3456789999999999999999999988875543
No 164
>TIGR02436 conserved hypothetical protein TIGR02436. This family consists of a few small, well-conserved proteins found so far in Bacteroides thetaiotaomicron VPI-5482, Nostoc sp. PCC 7120, Clostridium tetani E88, Chlorobium tepidum TLS, and Prevotella ruminicola 23. The function is unknown.
Probab=29.67 E-value=2.2e+02 Score=20.59 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhhc-----CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 14 ELSAGLSRKCTAASA-----LDGELKKQKLSEIKTGLDDADALIRKMDLEAR--SLQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 14 ~l~~~i~~~l~~l~~-----~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~--~~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
.+.++|.+.-..+|. ......+.-++.+.-.+.++.++..++++-.. .+|......+..++.+....+..+.+
T Consensus 27 ~L~~Qi~Rs~~SI~aNIAEg~~r~s~~df~~fl~ia~gs~~E~~~~L~la~~~~~l~~~~~~~l~~e~~ei~~~L~~li~ 106 (111)
T TIGR02436 27 IISKQLLRSGTSIGANIREAQAAESTADFIHKLSIALKEGSETEYWIRLLIQTELIPENRYESIKGDCLELLKILAATVV 106 (111)
T ss_pred hHHHHHHHhhccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776555542 11123456778888888899998888887544 46766677777777777777766665
Q ss_pred HH
Q 028804 87 EV 88 (203)
Q Consensus 87 e~ 88 (203)
..
T Consensus 107 ~~ 108 (111)
T TIGR02436 107 KT 108 (111)
T ss_pred Hh
Confidence 43
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.11 E-value=2.5e+02 Score=27.73 Aligned_cols=62 Identities=6% Similarity=0.127 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHhhhhcccccc
Q 028804 115 VSADQRGRLLMST---ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQ------RQSLLHAHNTVCPSS 176 (203)
Q Consensus 115 ~~~~~r~~ll~~~---~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~Q------Re~L~~~~~~l~~~d 176 (203)
.+..++|.||... +++..-...|.+-..++.=-..|...+-+++..| ||||+-+++.|.+.+
T Consensus 175 l~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~ 245 (784)
T PRK10787 175 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 245 (784)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCC
Confidence 3456777777754 5555555666665556655566777888888777 789999999998754
No 166
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.87 E-value=3.9e+02 Score=23.23 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=20.1
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028804 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSIL 155 (203)
Q Consensus 123 ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il 155 (203)
|-..+.+++++.......+.++.++++-+..++
T Consensus 143 L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 143 LAVAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666444
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.65 E-value=3.2e+02 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHhhcccchhhhhhhhhcccC
Q 028804 180 VVYLGGHGWCYKSLIFTCVAP 200 (203)
Q Consensus 180 ~~~~~r~~~c~~~~~~~~~~~ 200 (203)
.-++-..+--..+|||-.|+|
T Consensus 172 ~wf~~Gg~v~~~GlllGlilp 192 (206)
T PRK10884 172 QWFMYGGGVAGIGLLLGLLLP 192 (206)
T ss_pred HHHHHchHHHHHHHHHHHHhc
Confidence 344444455556666666666
No 168
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.12 E-value=1.9e+02 Score=19.43 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=14.3
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHH
Q 028804 1 MS-QVFEGYERQYCELSAGLSRK 22 (203)
Q Consensus 1 Ms-~~fe~ye~e~~~l~~~i~~~ 22 (203)
|| ++|+..|.-+...++.|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L 23 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL 23 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 45 57888887777777766654
No 169
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=27.92 E-value=2.1e+02 Score=23.89 Aligned_cols=60 Identities=7% Similarity=0.216 Sum_probs=44.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
.....+++..++.....++.||--|+.+-...-...+.-...||.++.++-..|..+...
T Consensus 33 ~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~a 92 (237)
T PF10456_consen 33 PLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQA 92 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHH
Confidence 334678899999999999999999987765444444555678899999999888776543
No 170
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.85 E-value=2.9e+02 Score=21.45 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 46 ~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+..+..+-++..+.-.+....+..+..++..|+.+.++.+.+-..+.
T Consensus 47 KsiK~~l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~ 93 (157)
T PF14235_consen 47 KSIKQHLAELAADLLELELAARAAYQKKIARYKKEKARYKSEAEELE 93 (157)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555555554433388999999999999999888866554
No 171
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.81 E-value=7.5e+02 Score=26.16 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNV--KAMLLSKLREYK 78 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~--r~~~~~kv~~yk 78 (203)
|++-|++|+ ++...++++...+..+......-+.-.-........+.-....+++--...+.... .......+....
T Consensus 225 l~e~~~~~~-~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1353)
T TIGR02680 225 VADALEQLD-EYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELD 303 (1353)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 79 TDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDL 158 (203)
Q Consensus 79 ~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L 158 (203)
.++..++.+...+. ...++|-++. ..+..+.|.+--+.+......+...+.--..--..+
T Consensus 304 ~~~~~le~~~~~l~------~~~~~l~~~~--------------a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~ 363 (1353)
T TIGR02680 304 ARTEALEREADALR------TRLEALQGSP--------------AYQDAEELERARADAEALQAAAADARQAIREAESRL 363 (1353)
T ss_pred HHHHHHHHHHHHHH------HHHHHhcCCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHhhhhccccccchhH
Q 028804 159 HQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 159 ~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
..-+..+.....++.+....+.
T Consensus 364 e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 364 EEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 172
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=27.76 E-value=1.9e+02 Score=21.38 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 54 KMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 54 qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+-...+.+|+..+..+..-++.....++.+-.++-+.+
T Consensus 91 ~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (135)
T PRK09706 91 ELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKAR 129 (135)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678888888888877777777777777766544
No 173
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.65 E-value=1.9e+02 Score=19.13 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
++.++.+.+.-++.++-.++.+... -..+...+.+...++++++...+|.-
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~-~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKR-DAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333221 23344456777778888888887764
No 174
>PRK10132 hypothetical protein; Provisional
Probab=27.46 E-value=2.5e+02 Score=20.48 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
++..+..++...++.++++++.---....--..-|..+...++.-+..+..
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666665544333322223345555555554444443
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.44 E-value=3.4e+02 Score=22.09 Aligned_cols=10 Identities=10% Similarity=0.385 Sum_probs=3.7
Q ss_pred HhhHHHHHHH
Q 028804 42 KTGLDDADAL 51 (203)
Q Consensus 42 ~~~l~ea~~~ 51 (203)
+..+.+.+..
T Consensus 124 ~~~~~~~~~~ 133 (206)
T PRK10884 124 QQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 176
>PF13125 DUF3958: Protein of unknown function (DUF3958)
Probab=27.20 E-value=2.4e+02 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 028804 6 EGYERQYCELSAGLSRKCTAA 26 (203)
Q Consensus 6 e~ye~e~~~l~~~i~~~l~~l 26 (203)
+.-|.+|..+-.--....+.|
T Consensus 16 Eq~E~df~E~~~r~~rLF~ri 36 (99)
T PF13125_consen 16 EQAEQDFHEWRNRSNRLFNRI 36 (99)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 177
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.08 E-value=2.8e+02 Score=21.00 Aligned_cols=92 Identities=10% Similarity=0.135 Sum_probs=53.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhh------cCChHH-H-----H--------------HHHHHHHhhHHH----HHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAAS------ALDGEL-K-----K--------------QKLSEIKTGLDD----ADA 50 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~------~~~~~~-r-----~--------------~~i~~i~~~l~e----a~~ 50 (203)
|++.+-..-+.++.+...+...++-+. ..++.. . . .--...+..+.+ +-.
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 777777777777777777777766552 111111 0 0 011223333333 233
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 51 LIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 51 ~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.-++.+.-+.++|. ..-..-..+++.+..++.....++..+.
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999996 2344555888898888888888887765
No 178
>PRK08411 flagellin; Reviewed
Probab=26.99 E-value=5.6e+02 Score=24.43 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=39.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH-HHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 35 KQKLSEIKTGLDDADALIRKMD-LEARSL----QPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme-~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
...+...+..|+++.++|.+|. +-+... .+..|..+...+.+++.++..+-+
T Consensus 72 iS~LqtAEgAL~ei~diLqRiRELaVQAaNGT~S~~DR~AIq~EI~qL~eqI~~IAN 128 (572)
T PRK08411 72 LGILQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIAN 128 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788889999999999994 555543 467799999888888888777665
No 179
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.97 E-value=1.9e+02 Score=18.96 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhh
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLE 106 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~ 106 (203)
.++..||.-++.++..++.++.+..... +.-+.||+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~sr---sAAeaLFr 63 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKASR---SAAEALFR 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHh
Confidence 5677888888999999999987765432 34456774
No 180
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=26.53 E-value=2.6e+02 Score=20.44 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 40 EIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 40 ~i~~~l~ea~~~l~qme~Ev~~--~p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
+|-..|+.|..++..+--.-.. -|+..+..+..-..+|-..++.+...+++
T Consensus 14 ~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~ 66 (117)
T PF10280_consen 14 KIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRR 66 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555442 24456788888888888888886666654
No 181
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=26.30 E-value=3.1e+02 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred hcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 27 SALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 27 ~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
|.+..+.|+.+++.+...-+++.--++-+..+++
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~ 138 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN 138 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888999998888888877776666655
No 182
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.29 E-value=4.5e+02 Score=23.09 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
++=.++..+|.++++++..|++++..+..
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55667889999999999999999987653
No 183
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.09 E-value=7.4e+02 Score=25.54 Aligned_cols=43 Identities=7% Similarity=-0.006 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 138 ~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
...+.-+..++.-...+-+.-...|+.|++.-++|...++.++
T Consensus 758 e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 758 EKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333334444444455555666666666666666666655444
No 184
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.96 E-value=3.7e+02 Score=21.99 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC--ChHHHHHHHHHHH----hhHHHHHHHHHHHH
Q 028804 7 GYERQYCELSAGLSRKCTAASAL--DGELKKQKLSEIK----TGLDDADALIRKMD 56 (203)
Q Consensus 7 ~ye~e~~~l~~~i~~~l~~l~~~--~~~~r~~~i~~i~----~~l~ea~~~l~qme 56 (203)
+|-+.|....+++..++.++... ++++....+..++ .++.++++.+.--.
T Consensus 77 ~yL~py~~a~~~~~~~~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i~~~r 132 (207)
T COG5278 77 EYLEPYEEATEELDQKLEELRALTADDPELLESLDDLEPLIQWKLAEADETIPLRR 132 (207)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666432 2234444444333 35666666654433
No 185
>PLN02320 seryl-tRNA synthetase
Probab=25.93 E-value=4.9e+02 Score=24.34 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
+++++..+++..-.+-+.+-+++.. ........++..+++.++.++..++.++..+..
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~---~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKG---KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566555555555555543 122234567888888888888888888877653
No 186
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.61 E-value=1.5e+02 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 59 ARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 59 v~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
|..++.+.-..|..+++.+..++..+.++...++.
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566777777777777777777776653
No 187
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.42 E-value=9.3e+02 Score=26.49 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccccc
Q 028804 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSS 176 (203)
Q Consensus 120 r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d 176 (203)
+.......+.+..---.+.+........-.--....--|..||.-+.|+...+..+.
T Consensus 390 ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~ 446 (1822)
T KOG4674|consen 390 YSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELS 446 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555544444445555667777777777666655444
No 188
>PRK11637 AmiB activator; Provisional
Probab=25.34 E-value=5e+02 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028804 70 LLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 70 ~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.+.++.....++..++.++..
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 189
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.14 E-value=5.3e+02 Score=23.51 Aligned_cols=80 Identities=6% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhhc--CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 13 CELSAGLSRKCTAASA--LDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 13 ~~l~~~i~~~l~~l~~--~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
...+.++...+..+.. .+...|..++..++...+....+-.+++-.-..+.. .-...-.+|-++-.++..|.+++..
T Consensus 106 ~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~-~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 106 ATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQ-QRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555532 245567777766666665555544444322222221 1223334555555666667777765
Q ss_pred Hhc
Q 028804 91 VTS 93 (203)
Q Consensus 91 ~~~ 93 (203)
+..
T Consensus 185 ~~~ 187 (456)
T PRK07191 185 NRS 187 (456)
T ss_pred hhc
Confidence 443
No 190
>PRK12584 flagellin A; Reviewed
Probab=25.07 E-value=5.6e+02 Score=23.93 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HHHhc----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMD-LEARS----LQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme-~Ev~~----~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
.-...+...+..|.++.++|.+|. +-+.. ..+..|..+...+.+++.++..+-.
T Consensus 70 ~g~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dR~ai~~Ei~~L~~ei~~ian 128 (510)
T PRK12584 70 DGMGIIQVADKAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGN 128 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567788899999999999996 44443 2467799999888888888777655
No 191
>PLN02943 aminoacyl-tRNA ligase
Probab=24.99 E-value=4.1e+02 Score=26.87 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=38.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 38 LSEIKTGLDDADALIRKMDLEA------RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev------~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+..++++++.++.-+...+.-+ .++|+.....-+.|+..+..++..++..+..+.
T Consensus 891 ~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 891 VERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555554443 367888888889999999999999998887654
No 192
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.78 E-value=3.6e+02 Score=21.45 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 36 QKLSEIKTGLDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~--~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+-.-..+.-..++.....|+-|+..+... .-.....+.+.+|+...-|..++....
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566777788888888877643 245677788888888888888887654
No 193
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=24.77 E-value=6.1e+02 Score=24.13 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhh-------h-cCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 028804 10 RQYCELSAGLSRKCTAA-------S-ALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL 81 (203)
Q Consensus 10 ~e~~~l~~~i~~~l~~l-------~-~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l 81 (203)
.++..++..|..++..+ . ..+..+|.++-.++.+.|+-...+-+|..-=+.+-....+..+..-=+-....+
T Consensus 8 ~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~M 87 (575)
T KOG2150|consen 8 QEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRM 87 (575)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHH
Confidence 34445555555444322 2 235677878888888888888888777776666655545544443333333344
Q ss_pred HHH
Q 028804 82 NNL 84 (203)
Q Consensus 82 ~~l 84 (203)
+++
T Consensus 88 Erf 90 (575)
T KOG2150|consen 88 ERF 90 (575)
T ss_pred HHH
Confidence 433
No 194
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.76 E-value=4.1e+02 Score=22.08 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=27.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
+.++...|++|+....++...+..+..+-+.++..-...+..++...=++|
T Consensus 159 vdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey 209 (230)
T cd07625 159 VDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREY 209 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555544444444444444444444444
No 195
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.63 E-value=2.7e+02 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 028804 58 EARSLQPNVKAMLLSKLRE 76 (203)
Q Consensus 58 Ev~~~p~~~r~~~~~kv~~ 76 (203)
.-..+++.+|..+...+..
T Consensus 55 ~W~~LspeqR~~~R~~~~~ 73 (107)
T PF11304_consen 55 RWAALSPEQRQQARENYQR 73 (107)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444443
No 196
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.52 E-value=3.1e+02 Score=20.61 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 028804 45 LDDADALI 52 (203)
Q Consensus 45 l~ea~~~l 52 (203)
|+++.+++
T Consensus 59 L~eI~~~l 66 (134)
T cd04779 59 LAEIKDQL 66 (134)
T ss_pred HHHHHHHH
Confidence 34444443
No 197
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=24.35 E-value=3.2e+02 Score=20.66 Aligned_cols=33 Identities=12% Similarity=0.411 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 30 ~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
.+..|..+.+.+...+..++.=|.+++.+.+.+
T Consensus 14 Te~~K~~l~~~l~~~i~~~d~el~QLefq~kr~ 46 (131)
T PF11068_consen 14 TEKWKEELLQELQEQIQQLDQELQQLEFQGKRM 46 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888888887754
No 198
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.34 E-value=5.1e+02 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 69 MLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
+....|...-.+|+.+..++...+.
T Consensus 291 ~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 291 QASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666554
No 199
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.30 E-value=2.7e+02 Score=22.07 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 46 ~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
.-+..+.+.+--.+..+.|..+..|....+.|..+++.|.+.++..-.
T Consensus 115 ~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~ 162 (203)
T cd01145 115 NNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFE 162 (203)
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666677777899999999999999999999876543
No 200
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.22 E-value=2.4e+02 Score=19.25 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
...|..|+..++.++..+...+..++
T Consensus 59 ~~~y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 59 LDPYVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999998888776
No 201
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.19 E-value=3e+02 Score=20.28 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
.+..+..+++++.+-++ +-|-++ ...|..+..|+++....+..++.....++.
T Consensus 9 q~~~l~~~v~~lRed~r--~SEdrs--a~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIR--RSEDRS--AASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHh--hhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666 222222 345888888888888888888777766653
No 202
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=23.97 E-value=5.2e+02 Score=23.23 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhhhhcCChHHH-HHHHHHHHhhHHHHHHHHHHHHH----HH-hcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 12 YCELSAGLSRKCTAASALDGELK-KQKLSEIKTGLDDADALIRKMDL----EA-RSLQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 12 ~~~l~~~i~~~l~~l~~~~~~~r-~~~i~~i~~~l~ea~~~l~qme~----Ev-~~~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
|..-++..+..+.-+...- ++| ..++..|+..++.++.+|..+.. .. -.++...|..+...|..+-..|.+|.
T Consensus 291 f~ANveGa~~~~~~l~P~l-~~~dp~l~~~id~~f~~v~~lL~~~~~~~G~~~y~~l~~~dr~~L~~~v~~LaE~Ls~l~ 369 (375)
T PRK10378 291 FQANVDGSQKIVDLLRPLL-EKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLR 369 (375)
T ss_pred HHHHHHHHHHHHHHhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhcCHHHHHHHHHHHHHHHhHHHHhh
Confidence 4444444444444443211 222 34667788888888888877762 22 23566677777777777777666655
Q ss_pred HH
Q 028804 86 NE 87 (203)
Q Consensus 86 ~e 87 (203)
..
T Consensus 370 ~~ 371 (375)
T PRK10378 370 GV 371 (375)
T ss_pred hh
Confidence 43
No 203
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=23.92 E-value=2.1e+02 Score=18.52 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 028804 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELG 151 (203)
Q Consensus 120 r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG 151 (203)
-+.++.+.+.|+ .+|+.+..+..|-+.|+
T Consensus 18 ~e~vl~nlN~LN---RsLE~~i~VGkEF~~V~ 46 (58)
T PF08649_consen 18 MESVLNNLNALN---RSLESVISVGKEFESVS 46 (58)
T ss_pred HHHHHHHHHHHH---HhHHHHHHHhhhHHHHH
Confidence 455666655555 34555566666655554
No 204
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.89 E-value=1.5e+02 Score=23.16 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028804 49 DALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (203)
Q Consensus 49 ~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~ 79 (203)
++.|++++.+.+.+|.++|.+.....++|=.
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~ 34 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEYFD 34 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4677888888888898887777665555443
No 205
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.84 E-value=1.4e+02 Score=20.45 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
.+-+++..|+.++..|+.++.||+.
T Consensus 27 svgd~e~eLerCK~sirrLeqevnk 51 (79)
T PF09036_consen 27 SVGDIEQELERCKASIRRLEQEVNK 51 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999984
No 206
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=23.58 E-value=5.2e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 49 DALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 49 ~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
+..|..+--++..+|+.+|..+-..+.++|+++..+-
T Consensus 36 kg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~ 72 (339)
T PRK00488 36 KGELTELLKGLGKLPPEERKEAGALINELKQAIEAAL 72 (339)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566778899999999888888888877743
No 207
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.57 E-value=6.5e+02 Score=24.04 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcCcCCcccccHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 028804 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRT 143 (203)
Q Consensus 64 ~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~ 143 (203)
...|..+..+...+-..+..+...+..++... ..++-...+.++.-...|..-.+.
T Consensus 131 ~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~------------------------~~~i~~~V~~iN~ll~~Ia~LN~q 186 (613)
T PRK08471 131 SAQKQALAQKTETLTNNIKDTRERLDTLQKKV------------------------NEELKVTVDEINSLGKQIAEINKQ 186 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588888888888888877777777654221 111122223333333444444444
Q ss_pred HHHHHHHHHH-HHHHHHHhhHHHHhhhhccccc
Q 028804 144 MLETEELGVS-ILQDLHQQRQSLLHAHNTVCPS 175 (203)
Q Consensus 144 a~Ete~iG~~-Il~~L~~QRe~L~~~~~~l~~~ 175 (203)
+...+..|.. ...+|.+||+.|.+--..+.++
T Consensus 187 I~~~~~~g~~~~~ndL~DqRD~ll~eLS~~v~v 219 (613)
T PRK08471 187 IKEVEAGKTLKHANELRDKRDELELTLSKLVGA 219 (613)
T ss_pred HHhhhcCCCCCCchhhHHHHHHHHHHHHhhcCe
Confidence 4444433322 4678999999998855554444
No 208
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.32 E-value=8.4e+02 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhcC
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESG 108 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~~ 108 (203)
|..+...+..|..+-+...+++..+.....-..+-..+||.+
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~ 949 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKK 949 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCC
Confidence 555556666655555555555554443332222344688653
No 209
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=23.29 E-value=2.1e+02 Score=18.30 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAAS 27 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~ 27 (203)
..|..+..++...+..+...+..+.
T Consensus 14 ~~~~~~~~~l~~~~~~l~~~~~~l~ 38 (86)
T PF06013_consen 14 QQLQAQADELQSQLQQLESSIDSLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777888888888777774
No 210
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.17 E-value=3.4e+02 Score=20.56 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHH----HHHHHHHhhhhhcCC--hHHHHHHHHHHHhhHHHHHHHHH
Q 028804 4 VFEGYERQYCEL----SAGLSRKCTAASALD--GELKKQKLSEIKTGLDDADALIR 53 (203)
Q Consensus 4 ~fe~ye~e~~~l----~~~i~~~l~~l~~~~--~~~r~~~i~~i~~~l~ea~~~l~ 53 (203)
-|+.+-.+|..- ..+|...|+.||+.. .++....|+.++..+.++..-+.
T Consensus 66 ~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~ 121 (144)
T PF11221_consen 66 EFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQ 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443 446777788888743 33434556666666555554433
No 211
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.96 E-value=5.7e+02 Score=23.14 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 028804 74 LREYKTDLNNLKNEVK 89 (203)
Q Consensus 74 v~~yk~~l~~l~~e~~ 89 (203)
...+...++.++.++.
T Consensus 384 ~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 384 KKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 212
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.92 E-value=2.5e+02 Score=18.99 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 37 KLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
.+.+++.+++.|-+.|.-+.+|+-
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEie 28 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIE 28 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666665555554
No 213
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.59 E-value=8.8e+02 Score=25.19 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 51 LIRKMDLEARSLQP------NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 51 ~l~qme~Ev~~~p~------~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
-+...+.|..+.+. ..+.-+..++.+....+..|+..+...+
T Consensus 188 ~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 188 LVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555442 2244455666666666666666665543
No 214
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.52 E-value=2.7e+02 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
++..++.+|..|-+.|.-+.+|+-.+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieEL 30 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555543
No 215
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.33 E-value=1.4e+02 Score=19.10 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
-.++.+++.++++++++++++..
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666543
No 216
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.16 E-value=3.4e+02 Score=22.15 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 49 DALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 49 ~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
..+.+.+--.+..+.|..+..|....+.|..++..+.+.++.....
T Consensus 102 ~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 147 (256)
T PF01297_consen 102 KKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAK 147 (256)
T ss_dssp HHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445577788999999999999999999999876543
No 217
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=21.91 E-value=4.8e+02 Score=21.88 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 028804 79 TDLNNLKNEVKRV 91 (203)
Q Consensus 79 ~~l~~l~~e~~~~ 91 (203)
.++++++++|..+
T Consensus 131 ~eveK~Kk~Y~~~ 143 (237)
T cd07685 131 QDIEKLKSQYRSL 143 (237)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 218
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.87 E-value=7.8e+02 Score=24.30 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHhhhhcc
Q 028804 128 ERLNHSTDRIKESR-RTMLETEELGVSILQDLHQQRQSLLHAHNTV 172 (203)
Q Consensus 128 ~~L~~~~~~L~~s~-r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l 172 (203)
....++..++++.- .+..+|.++-..+...|...++.+...-+.+
T Consensus 335 ~~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i 380 (806)
T PF05478_consen 335 SIVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQI 380 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666643 4455677777777777777777777544433
No 219
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.79 E-value=2.9e+02 Score=19.28 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=11.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCC
Q 028804 39 SEIKTGLDDADALIRKMDLEARSLQ 63 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~~~p 63 (203)
..+...|++-.+.-.++.-+....|
T Consensus 54 ~~L~~LLesnrq~R~e~~~~~~~~~ 78 (83)
T PF03670_consen 54 AQLQELLESNRQIRLEFQEQLSKAP 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3444444444444444444444443
No 220
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=21.79 E-value=5.6e+02 Score=22.58 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q 028804 43 TGLDDADALIRK 54 (203)
Q Consensus 43 ~~l~ea~~~l~q 54 (203)
..+++++.+|++
T Consensus 226 k~lee~~~lL~e 237 (325)
T KOG2669|consen 226 KHLEEEEMLLRE 237 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 221
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.78 E-value=9.4e+02 Score=25.22 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=40.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhcccc
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCP 174 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~ 174 (203)
+-+-.-...+.........+.+.+.+.+.--..+..+|..-+..|......+.+
T Consensus 577 ~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~ 630 (1311)
T TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD 630 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445566777777778888888888888888888888888888877766663
No 222
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=21.44 E-value=4.3e+02 Score=26.82 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 39 SEIKTGLDDADALIRKMDLEA------RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev------~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..+++.++.++.-+...+.-+ .++|+....+-+.|+.++..+++.++..+..+.
T Consensus 932 ~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 932 AKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333 357888888889999999999999998887654
No 223
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=21.40 E-value=4.2e+02 Score=21.06 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=7.7
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKM 55 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qm 55 (203)
+..++...+.+...|+..
T Consensus 89 ~~~vda~~k~~~~~~ke~ 106 (172)
T KOG3366|consen 89 LKEVDAEEKAAVKEIKEY 106 (172)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 334444444444444433
No 224
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.27 E-value=2.3e+02 Score=18.02 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028804 68 AMLLSKLREYKTDLNNLKNE 87 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e 87 (203)
..|...+..++.++..|+.+
T Consensus 43 ~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555444
No 225
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=21.14 E-value=2.9e+02 Score=18.99 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 028804 48 ADALIRKMDLEARSL-QPNVKAMLLSKLREY 77 (203)
Q Consensus 48 a~~~l~qme~Ev~~~-p~~~r~~~~~kv~~y 77 (203)
.++++....=.++.. |.+.|.++..+|+.|
T Consensus 54 ~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~ 84 (86)
T PF10163_consen 54 FEDLLEEITPKARAMVPDEVKKELLQRIRAF 84 (86)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 678888888888865 999999999999886
No 226
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=21.01 E-value=3.8e+02 Score=20.37 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 34 KKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 34 r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
|+..+..+...+.+| -+++++.-++.-|.+.=..+..+|++...++..=+..|..+.
T Consensus 41 r~seldqA~~~~~ea--e~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~AA~ 97 (136)
T PF11570_consen 41 RRSELDQANKKVKEA--EIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKAAQ 97 (136)
T ss_dssp HHHHHHHHHHHHHHH--HHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhcccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555442 233333333444444455677899999999998888887765
No 227
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.99 E-value=5.3e+02 Score=22.01 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
+-+.+...+..+..-+.++.-.+.++.. .-..+..|+..-+.+++..++-+..++.
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~-de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLAS-DEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666777776666654 4578888888888899988888887763
No 228
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.87 E-value=8.6e+02 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.463 Sum_probs=8.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhc
Q 028804 41 IKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~ 61 (203)
++..+.+++.-+..++-++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 263 LEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444433
No 229
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=20.82 E-value=5e+02 Score=21.69 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 57 LEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 57 ~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+.++.+|.. ...|+...+.--.-+++.+.++++++
T Consensus 107 ~D~k~i~a~-~Kky~~e~k~k~~sleK~qseLKKlR 141 (232)
T cd07646 107 LDSRYLTAA-LKKYQTEHRSKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444432 23333333333334444444444443
No 230
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.82 E-value=1.5e+02 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 028804 72 SKLREYKTDLNNLK 85 (203)
Q Consensus 72 ~kv~~yk~~l~~l~ 85 (203)
.++.+++.++++++
T Consensus 110 ~~i~~l~keL~~i~ 123 (161)
T PF05873_consen 110 KRIAELEKELANIE 123 (161)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 231
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.81 E-value=5.6e+02 Score=22.25 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 52 IRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 52 l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
|++..-|+..+++.+-..++.+++....++...++++...
T Consensus 191 L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 191 LKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666555555555555555555555555443
No 232
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.72 E-value=4.2e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 66 VKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 66 ~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
--..++.||.+||+.+..+...+
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999888
No 233
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.65 E-value=2e+02 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 028804 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKM 55 (203)
Q Consensus 5 fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qm 55 (203)
++++|.-|+..++.---.=..| ++|..+..++++.-+|+.++-.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665554322111222 455555556666666666554333
No 234
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=20.53 E-value=3.6e+02 Score=19.84 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 028804 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (203)
Q Consensus 61 ~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~ 95 (203)
..+..-+...+.+|..-+.++...+.+|..++...
T Consensus 59 Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G 93 (115)
T PF06476_consen 59 CTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKG 93 (115)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33456677888888888888888888888877553
No 235
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.36 E-value=2.6e+02 Score=18.16 Aligned_cols=26 Identities=8% Similarity=0.258 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
.++..+|..++.++..++..+.....
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888876653
No 236
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.34 E-value=2.3e+02 Score=17.52 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhhc--CChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028804 14 ELSAGLSRKCTAASA--LDGELKKQKLSEIKTGLDDADALIRKMDLEA 59 (203)
Q Consensus 14 ~l~~~i~~~l~~l~~--~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev 59 (203)
..+..+...+.++.+ .+-++--.+..+.-..++.|.+.|+..+..+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555532 2333333444444444445555554444433
No 237
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.03 E-value=3.9e+02 Score=20.10 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 028804 12 YCELSAGLSRK 22 (203)
Q Consensus 12 ~~~l~~~i~~~ 22 (203)
|..+.+.+...
T Consensus 45 f~~~~~~~~~~ 55 (142)
T PF04048_consen 45 FEELKKRIEKA 55 (142)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!