Query 028804
Match_columns 203
No_of_seqs 111 out of 386
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.9 7.1E-24 2.4E-28 153.7 11.7 89 1-89 13-102 (102)
2 1vcs_A Vesicle transport throu 99.9 9.2E-24 3.1E-28 153.2 9.1 94 1-94 3-96 (102)
3 3onj_A T-snare VTI1; helix, HA 99.9 2.3E-22 7.9E-27 144.5 12.5 91 3-93 1-94 (97)
4 2nps_C Vesicle transport throu 99.7 4.7E-17 1.6E-21 112.9 4.2 65 118-182 2-66 (81)
5 1gl2_C VTI1B, vesicle transpor 99.5 3.4E-14 1.2E-18 94.5 4.9 55 128-182 2-56 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.2 4.7E-11 1.6E-15 82.1 6.8 62 121-182 9-70 (79)
7 1nhl_A Synaptosomal-associated 98.8 5E-09 1.7E-13 66.8 4.0 45 138-182 3-47 (54)
8 1l4a_C S-SNAP25 fusion protein 98.3 9.5E-07 3.2E-11 60.9 5.8 57 126-182 18-74 (83)
9 3b5n_C Protein transport prote 98.3 8.3E-07 2.8E-11 59.3 5.2 53 130-182 7-59 (70)
10 3hd7_B Syntaxin-1A; membrane p 91.0 0.48 1.7E-05 33.7 5.7 46 135-180 21-66 (109)
11 2c5k_T Syntaxin TLG1, T-snare 90.1 3.4 0.00012 28.5 9.5 83 1-89 3-92 (95)
12 1gl2_D Syntaxin 8, vesicle tra 89.2 0.57 2E-05 29.9 4.4 59 130-188 4-62 (65)
13 3b5n_D Protein transport prote 87.6 1 3.6E-05 28.8 4.8 53 134-186 9-61 (64)
14 1n7s_D SNAP-25A; neuronal snar 86.7 1.1 3.7E-05 28.7 4.5 56 132-187 7-62 (66)
15 1sfc_D Protein (SNAP-25B), pro 84.4 2 6.8E-05 29.1 5.2 57 130-186 24-80 (87)
16 4dnd_A Syntaxin-10, SYN10; str 83.1 11 0.00039 27.4 11.8 86 3-88 27-128 (130)
17 2nps_D Syntaxin-6; vesicle fus 82.8 1.1 3.6E-05 30.1 3.2 58 129-186 13-70 (82)
18 3ghg_A Fibrinogen alpha chain; 81.1 7.7 0.00026 34.8 8.9 25 3-27 53-77 (562)
19 4aj5_A SKA1, spindle and kinet 81.0 11 0.00037 25.7 10.2 56 3-60 4-61 (91)
20 1l4a_D S-SNAP25 fusion protein 80.2 2 6.7E-05 29.2 3.9 54 133-186 28-81 (87)
21 3ol1_A Vimentin; structural ge 78.0 16 0.00055 26.0 10.2 52 1-60 11-62 (119)
22 1m1j_B Fibrinogen beta chain; 76.0 31 0.0011 30.5 11.3 51 3-54 89-139 (464)
23 2xhe_B Syntaxin1; exocytosis, 70.7 40 0.0014 27.2 13.4 45 136-180 218-262 (279)
24 1d7m_A Cortexillin I; coiled-c 69.6 23 0.0008 24.0 9.0 49 11-60 22-75 (101)
25 3na7_A HP0958; flagellar bioge 68.4 44 0.0015 26.7 16.3 8 187-194 202-209 (256)
26 1nlw_A MAD protein, MAX dimeri 67.7 23 0.0008 23.3 7.1 44 8-51 12-55 (80)
27 2avr_X Adhesion A; antiparalle 62.6 40 0.0014 24.2 10.9 79 4-92 10-95 (119)
28 2db7_A Hairy/enhancer-OF-split 61.1 18 0.00063 22.9 4.9 44 4-47 15-61 (64)
29 3mq9_A Bone marrow stromal ant 60.9 71 0.0024 27.4 10.5 30 34-63 395-424 (471)
30 2v66_B Nuclear distribution pr 58.0 47 0.0016 23.5 11.2 19 127-145 58-76 (111)
31 1deq_A Fibrinogen (alpha chain 57.6 92 0.0031 26.8 10.4 26 3-28 56-81 (390)
32 1nkp_A C-MYC, MYC proto-oncoge 56.7 41 0.0014 22.5 8.2 51 8-58 17-67 (88)
33 3lay_A Zinc resistance-associa 56.6 52 0.0018 25.1 7.7 23 67-89 115-137 (175)
34 2v71_A Nuclear distribution pr 56.2 68 0.0023 24.8 14.7 20 128-147 112-131 (189)
35 1t3j_A Mitofusin 1; coiled coi 55.4 48 0.0016 22.8 7.1 52 37-88 41-94 (96)
36 2v4h_A NF-kappa-B essential mo 55.2 52 0.0018 23.2 8.2 54 37-90 25-80 (110)
37 1i6z_A BAG-family molecular ch 54.4 57 0.002 23.8 7.2 88 5-94 23-129 (135)
38 3hd7_A Vesicle-associated memb 52.8 25 0.00085 23.8 4.8 43 135-177 5-47 (91)
39 2l3l_A Tubulin-specific chaper 51.9 59 0.002 22.8 10.1 66 5-90 33-102 (111)
40 4afl_A P29ING4, inhibitor of g 51.8 54 0.0018 22.3 7.7 76 4-87 5-80 (104)
41 3c98_B Syntaxin-1A; protein co 51.3 83 0.0029 24.4 12.8 53 127-179 204-256 (279)
42 3u1c_A Tropomyosin alpha-1 cha 51.3 56 0.0019 22.4 9.3 68 16-92 4-71 (101)
43 3ajm_A Programmed cell death p 51.0 89 0.003 24.6 9.5 75 10-89 94-168 (213)
44 3etw_A Adhesin A; antiparallel 50.9 65 0.0022 23.0 11.7 86 4-92 10-95 (119)
45 1m1j_C Fibrinogen gamma chain; 50.6 1.2E+02 0.0042 26.2 12.5 26 3-28 27-52 (409)
46 3jsv_C NF-kappa-B essential mo 50.1 59 0.002 22.3 8.0 62 39-106 5-68 (94)
47 3iox_A AGI/II, PA; alpha helix 45.6 1.5E+02 0.0052 26.3 9.8 21 9-29 4-24 (497)
48 3qh9_A Liprin-beta-2; coiled-c 44.8 66 0.0023 21.3 6.1 26 65-90 40-65 (81)
49 1ic2_A Tropomyosin alpha chain 43.0 67 0.0023 20.9 9.0 66 18-92 3-68 (81)
50 1sz9_A PCF11 protein; RNA poly 42.6 79 0.0027 23.0 6.6 65 12-76 5-69 (144)
51 1u2m_A Histone-like protein HL 42.2 13 0.00044 26.9 2.1 52 4-55 31-83 (143)
52 3ghg_B Fibrinogen beta chain; 40.9 1.9E+02 0.0064 25.5 10.1 49 3-52 84-132 (461)
53 3oa7_A Head morphogenesis prot 40.8 63 0.0022 25.2 5.9 47 47-94 27-73 (206)
54 3u59_A Tropomyosin beta chain; 39.9 86 0.003 21.3 9.3 67 16-91 4-70 (101)
55 3gwk_C SAG1039, putative uncha 39.0 79 0.0027 20.6 7.5 63 29-91 8-74 (98)
56 4afl_A P29ING4, inhibitor of g 38.7 90 0.0031 21.1 8.6 19 36-54 25-43 (104)
57 3ljc_A ATP-dependent protease 38.4 1.3E+02 0.0043 23.7 7.8 61 115-175 182-251 (252)
58 1uk5_A BAG-family molecular ch 38.2 70 0.0024 22.6 5.3 13 50-62 63-75 (111)
59 1k1f_A Breakpoint cluster regi 37.6 40 0.0014 21.6 3.6 25 37-61 27-51 (72)
60 3v47_C Flagellin; innate immun 35.8 1.4E+02 0.0049 25.9 8.1 55 32-86 28-87 (425)
61 4dci_A Uncharacterized protein 34.3 1.4E+02 0.0048 22.1 9.2 34 29-62 22-55 (150)
62 1jth_B Syntaxin 1A; coiled-coi 33.7 77 0.0027 20.3 4.8 45 136-180 11-55 (77)
63 1m62_A BAG-family molecular ch 32.9 83 0.0029 21.1 4.9 12 51-62 45-56 (87)
64 2jee_A YIIU; FTSZ, septum, coi 32.8 1.1E+02 0.0037 20.3 11.1 18 3-20 6-23 (81)
65 3zbh_A ESXA; unknown function, 32.1 1E+02 0.0035 19.9 9.4 64 29-92 9-76 (99)
66 3ghg_A Fibrinogen alpha chain; 31.7 2.9E+02 0.0097 24.9 10.5 13 156-168 138-150 (562)
67 3tul_A Cell invasion protein S 31.7 1.6E+02 0.0054 21.9 9.8 52 41-92 74-127 (158)
68 1dn1_B Syntaxin 1A, syntaxin b 31.5 2E+02 0.0068 23.0 18.1 44 137-180 202-245 (267)
69 1m7k_A Silencer of death domai 30.3 94 0.0032 21.4 4.9 12 51-62 58-69 (99)
70 3ol1_A Vimentin; structural ge 30.2 1.4E+02 0.0049 20.9 11.3 86 2-88 15-106 (119)
71 3axj_A GM27569P, translin; tra 29.6 1.8E+02 0.006 23.2 7.2 33 32-64 67-99 (249)
72 3i00_A HIP-I, huntingtin-inter 29.5 1.5E+02 0.0052 21.0 8.2 51 31-85 10-60 (120)
73 1gl2_C VTI1B, vesicle transpor 29.5 1E+02 0.0036 19.1 4.8 27 118-144 34-60 (65)
74 2nps_B Syntaxin 13, vesicle-as 29.3 1.1E+02 0.0037 19.2 7.5 30 31-60 1-30 (71)
75 1jcd_A Major outer membrane li 28.9 78 0.0027 19.1 3.8 25 68-92 14-38 (52)
76 1hs7_A Syntaxin VAM3; UP-and-D 28.9 1.4E+02 0.0048 20.4 10.3 71 13-90 16-89 (97)
77 3gwk_C SAG1039, putative uncha 28.8 1.2E+02 0.0041 19.7 8.2 23 4-26 19-41 (98)
78 1jth_B Syntaxin 1A; coiled-coi 28.5 96 0.0033 19.8 4.5 29 32-60 6-34 (77)
79 2v4h_A NF-kappa-B essential mo 28.4 1.5E+02 0.0053 20.7 8.5 25 65-89 83-107 (110)
80 1deq_A Fibrinogen (alpha chain 28.2 2E+02 0.007 24.6 7.5 22 38-59 136-157 (390)
81 1ugo_A BCL2-associated athanog 27.9 1.4E+02 0.0046 20.6 5.3 13 50-62 51-63 (99)
82 1i6z_A BAG-family molecular ch 27.2 1.8E+02 0.0062 21.1 12.4 27 35-61 20-46 (135)
83 1gax_A Valrs, valyl-tRNA synth 27.1 1.2E+02 0.004 28.9 6.5 55 36-90 800-860 (862)
84 2jee_A YIIU; FTSZ, septum, coi 26.8 1.4E+02 0.0048 19.7 7.4 26 37-62 7-32 (81)
85 2lp4_A Chemotaxis protein CHEA 26.4 2.2E+02 0.0076 21.9 7.8 28 1-28 5-32 (225)
86 1t3j_A Mitofusin 1; coiled coi 26.3 1.6E+02 0.0054 20.1 7.3 47 45-91 42-90 (96)
87 1skv_A ORF D-63, hypothetical 26.1 1.3E+02 0.0044 19.1 5.5 24 3-26 9-33 (69)
88 4ioe_A Secreted protein ESXB; 26.1 1.3E+02 0.0045 19.2 9.8 62 29-90 9-74 (93)
89 3oja_A Leucine-rich immune mol 25.4 2.3E+02 0.0078 24.3 7.8 19 41-59 412-430 (487)
90 3k8w_A Flagellin homolog; flag 25.0 3E+02 0.01 23.0 9.3 54 33-86 50-108 (326)
91 1sfc_B Protein (syntaxin 1A), 24.4 1.2E+02 0.0042 19.7 4.5 29 32-60 17-45 (83)
92 3tnu_A Keratin, type I cytoske 23.7 2E+02 0.0067 20.4 9.1 24 69-92 74-97 (131)
93 2nps_C Vesicle transport throu 23.7 1.6E+02 0.0053 19.2 6.7 59 121-179 12-70 (81)
94 2rpa_A Katanin P60 ATPase-cont 23.4 1.6E+02 0.0055 19.2 6.1 39 47-85 34-73 (78)
95 2p2u_A HOST-nuclease inhibitor 22.8 2.4E+02 0.0082 21.0 10.2 65 33-106 17-81 (171)
96 3o0z_A RHO-associated protein 22.8 1.9E+02 0.0065 21.8 5.7 59 35-94 89-151 (168)
97 3v86_A De novo design helix; c 22.7 85 0.0029 15.8 3.8 15 74-88 9-23 (27)
98 2vs0_A Virulence factor ESXA; 22.7 1.6E+02 0.0053 18.8 7.6 62 30-91 7-72 (97)
99 1io1_A Phase 1 flagellin; beta 22.6 3.6E+02 0.012 22.9 9.0 54 33-86 17-75 (398)
100 1gl2_B Syntaxin 7; membrane pr 22.6 1.4E+02 0.0049 18.3 4.8 43 138-180 12-54 (65)
101 1zxa_A CGMP-dependent protein 22.6 1.2E+02 0.0042 19.3 4.0 26 36-61 25-50 (67)
102 4etr_A Putative uncharacterize 22.3 2.2E+02 0.0076 20.4 11.6 134 35-175 10-148 (153)
103 4dnd_A Syntaxin-10, SYN10; str 22.3 2.2E+02 0.0075 20.3 7.8 56 37-92 32-94 (130)
104 3tnu_B Keratin, type II cytosk 21.9 2.1E+02 0.0073 20.1 9.0 24 69-92 72-95 (129)
105 1kd8_B GABH BLL, GCN4 acid bas 21.7 1.1E+02 0.0039 16.9 4.2 25 68-92 4-28 (36)
106 2d4x_A Flagellar HOOK-associat 21.6 2.8E+02 0.0097 21.4 7.8 53 33-85 30-87 (248)
107 3b5n_B Protein SSO1; snare com 21.5 1.6E+02 0.0053 18.4 4.8 45 136-180 11-55 (69)
108 4h22_A Leucine-rich repeat fli 21.3 1.8E+02 0.0062 20.1 4.9 59 38-107 32-90 (103)
109 3fav_B ESAT-6, 6 kDa early sec 21.3 1.7E+02 0.0058 18.7 6.7 60 33-92 9-72 (94)
110 3swk_A Vimentin; cytoskeleton, 21.2 1.8E+02 0.0063 19.1 7.3 46 33-83 15-60 (86)
111 3fav_A ESAT-6-like protein ESX 21.1 1.8E+02 0.0062 19.0 8.6 61 32-92 10-74 (101)
112 2iub_A CORA, divalent cation t 20.7 3.6E+02 0.012 22.2 15.1 51 39-92 191-241 (363)
113 4i0x_A ESAT-6-like protein MAB 20.5 1.9E+02 0.0063 18.9 8.1 62 31-92 2-67 (94)
114 3mfq_A TROA, high-affinity zin 20.3 3.3E+02 0.011 21.7 7.3 47 46-92 110-156 (282)
115 1pq4_A Periplasmic binding pro 20.3 2E+02 0.0068 23.1 6.0 50 45-94 138-187 (291)
116 2prs_A High-affinity zinc upta 20.3 2E+02 0.0069 22.9 6.0 46 48-93 125-170 (284)
117 2o1e_A YCDH; alpha-beta protei 20.2 2E+02 0.0067 23.5 6.0 47 47-93 140-186 (312)
118 3cx3_A Lipoprotein; zinc-bindi 20.0 2E+02 0.0069 22.9 5.9 46 48-93 128-173 (284)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.91 E-value=7.1e-24 Score=153.70 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=85.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~-~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~ 79 (203)
||++|++||++|+.++++|+.+++.++.. ++++|+..+++++..|+||+++|++|++|++++|++.|..|+.||++||.
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999876 77999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028804 80 DLNNLKNEVK 89 (203)
Q Consensus 80 ~l~~l~~e~~ 89 (203)
++++|+++|+
T Consensus 93 dL~~lk~elk 102 (102)
T 2qyw_A 93 DLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhcC
Confidence 9999999873
No 2
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.90 E-value=9.2e-24 Score=153.16 Aligned_cols=94 Identities=29% Similarity=0.534 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~ 80 (203)
+|++|++||++|+.++++|+.++..++..+|++|+..|++|+..|+||+++|.+|++|++++|++.|..|+.||++||.+
T Consensus 3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~d 82 (102)
T 1vcs_A 3 SGSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE 82 (102)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028804 81 LNNLKNEVKRVTSG 94 (203)
Q Consensus 81 l~~l~~e~~~~~~~ 94 (203)
+++|+++|+.+...
T Consensus 83 L~~lk~elk~~~~~ 96 (102)
T 1vcs_A 83 MGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.89 E-value=2.3e-22 Score=144.51 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTD 80 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~--p~~~r~~~~~kv~~yk~~ 80 (203)
++|++||++|+.++++|+.+|+.+++.+|++|+..++.|+..++||.++|.+|++|++++ |++.|..|+.||++||.+
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHH-HHHHHHHHhc
Q 028804 81 LNN-LKNEVKRVTS 93 (203)
Q Consensus 81 l~~-l~~e~~~~~~ 93 (203)
+++ |+++|+.+..
T Consensus 81 l~~~lk~~lk~l~d 94 (97)
T 3onj_A 81 IQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 999 9999998763
No 4
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.66 E-value=4.7e-17 Score=112.90 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 118 ~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
+||++||+++++|++++++|.+|++++.|||+||.+|+.+|+.|||+|.+++++|+++|+++...
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s 66 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKS 66 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999988744
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.47 E-value=3.4e-14 Score=94.45 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=51.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 128 ~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
++|++++++|.+|+++|.|||+||.+|+.+|+.|||+|.+++++|+++|+++...
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s 56 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKS 56 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHH
Confidence 5799999999999999999999999999999999999999999999999988754
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.18 E-value=4.7e-11 Score=82.12 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=57.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
......+++++++++++.++.++|.||+++|.+|+.+|..|||+|.+++..|+++++++++.
T Consensus 9 ~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a 70 (79)
T 1n7s_C 9 EMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEA 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHH
Confidence 33444788999999999999999999999999999999999999999999999999999865
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.78 E-value=5e-09 Score=66.78 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 138 ~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
.++.++|.||+++|..|+.+|..|||+|.+++..|+++++++++.
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a 47 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRET 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHH
Confidence 689999999999999999999999999999999999999999865
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.32 E-value=9.5e-07 Score=60.91 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 126 STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 126 ~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
.....+.+..+..++.++|.+++++|..++..|..|+|+|.|++..|+.+++++++.
T Consensus 18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~A 74 (83)
T 1l4a_C 18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDA 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999999999999999999999999999876
No 9
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.31 E-value=8.3e-07 Score=59.28 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=49.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHh
Q 028804 130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVY 182 (203)
Q Consensus 130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~ 182 (203)
-+.+..+..++.++|.|++++|..++..|..|+|+|.+++..|+.++.++++.
T Consensus 7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~a 59 (70)
T 3b5n_C 7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVA 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999876
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=91.03 E-value=0.48 Score=33.66 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
+.+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~ 66 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 66 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456666777788888888888899999999999999998887665
No 11
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=90.12 E-value=3.4 Score=28.54 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=45.0
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CC--HHHHHHHHHH
Q 028804 1 MS-QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS----LQ--PNVKAMLLSK 73 (203)
Q Consensus 1 Ms-~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~----~p--~~~r~~~~~k 73 (203)
|| +.|.....|....+..+...+..-.+.++ +....+++.-++++.+.|..++--|.- -| ...|..+
T Consensus 3 ~s~DPF~~V~~D~~~ql~~l~~~~~~~~~~~~---~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~--- 76 (95)
T 2c5k_T 3 NSEDPFQQVVKDTKEQLNRINNYITRHNTAGD---DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQ--- 76 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTCCC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---
Confidence 56 69999999999999999998765422111 123334444444444444444332221 22 2345444
Q ss_pred HHHHHHHHHHHHHHHH
Q 028804 74 LREYKTDLNNLKNEVK 89 (203)
Q Consensus 74 v~~yk~~l~~l~~e~~ 89 (203)
|.+++.++..++.++.
T Consensus 77 v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 77 VKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455557777776663
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=89.19 E-value=0.57 Score=29.93 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccch
Q 028804 130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHGW 188 (203)
Q Consensus 130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~~ 188 (203)
+.+..+.|......+...-.+|..|=.+|..|-+.|.+..+.++.+++.++.-..|..+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888999999999999999999999999999999988876665543
No 13
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=87.58 E-value=1 Score=28.84 Aligned_cols=53 Identities=6% Similarity=0.067 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 134 ~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
...|.....++.-...+|..+-.+|..|-+.|.++..++..++..|+.-.-|.
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl 61 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRL 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777788888889999999999999999999999999999887655443
No 14
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=86.73 E-value=1.1 Score=28.69 Aligned_cols=56 Identities=4% Similarity=0.029 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhcccc
Q 028804 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGHG 187 (203)
Q Consensus 132 ~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~~ 187 (203)
+..+.|......+...-.+|..|=.+|..|-+.|.++...+..++..|+.-..|..
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456777788888888999999999999999999999999999998887665543
No 15
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.44 E-value=2 Score=29.13 Aligned_cols=57 Identities=5% Similarity=0.040 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 130 L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
..+..+.|......+.....+|..|=.+|..|-+.|.++...++.++..|+.-..|.
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl 80 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334556778888888888999999999999999999999999999999888665554
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.09 E-value=11 Score=27.37 Aligned_cols=86 Identities=7% Similarity=-0.004 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh---cC----ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---------CHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAAS---AL----DGELKKQKLSEIKTGLDDADALIRKMDLEARSL---------QPNV 66 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~---~~----~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~---------p~~~ 66 (203)
+.|-...+|....++.++..+.... .. +.++-..+-+++...|.+++.-|..++--|.-+ ++.+
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~E 106 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGD 106 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHH
Confidence 5899999999999999998887542 11 112444556677777777777777777666632 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028804 67 KAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
-..=+.-|...+.++..++.++
T Consensus 107 i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2223334445555555555543
No 17
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=82.78 E-value=1.1 Score=30.12 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=45.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 129 ~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
.+.+..+.|......+...-.+|..|=++|..|-+-|......++.+++-|+.-..|.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~ 70 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKL 70 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678888888889999999999999999999999999999988777555544
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.15 E-value=7.7 Score=34.83 Aligned_cols=25 Identities=4% Similarity=0.066 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAAS 27 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~ 27 (203)
.++...|.+|...+++|+..+..+.
T Consensus 53 glLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988874
No 19
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=81.02 E-value=11 Score=25.73 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh--hhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 3 QVFEGYERQYCELSAGLSRKCT--AASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~--~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
+-+++.-.-++.=+..|.+.+. .++. .| ..+..++++-..+--..++|..||.||.
T Consensus 4 s~LEdlc~hineKIs~ikk~L~Lr~~gq-dP-~lk~~L~Kig~Ei~~l~eLLn~~E~eV~ 61 (91)
T 4aj5_A 4 SDLEQLCSHVNEKIGNIKKTLSLRNCGQ-EP-TLKTVLNKIGDEIIVINELLNKLELEIQ 61 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666543 3332 33 4557889999999999999999999997
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=80.17 E-value=2 Score=29.22 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhHHhhccc
Q 028804 133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIVVYLGGH 186 (203)
Q Consensus 133 ~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~~~~~r~ 186 (203)
..+.|.....++...-.+|..|-.+|..|-+.|.++..+++.++..|+.-..|.
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888889999999999999999999999999999888665554
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.00 E-value=16 Score=26.00 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=29.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
||.+..-|+..+..+-.+|... . .++..+.-++.+.-..+++.-..++-|+.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~----~----~e~a~l~leldn~~~~~edfk~KyE~E~~ 62 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQL----T----NDKARVEVERDNLAEDIMRLREKLQEEML 62 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5556666776655555544333 1 14444555666666666777667776664
No 22
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.99 E-value=31 Score=30.47 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRK 54 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~q 54 (203)
+.|..|+..+..-++++...+..+.....+ -..++..|+..+++.+.-+..
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~-~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTT-MYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhcccccccc
Confidence 567899999999999999999888653322 223444444444444333333
No 23
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=70.74 E-value=40 Score=27.20 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 136 ~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.+....+.+.|..+|=..+..=...|.+.|.+|...|..+..++.
T Consensus 218 eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~ 262 (279)
T 2xhe_B 218 DIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVK 262 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444446799999999999888887665
No 24
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=69.61 E-value=23 Score=24.04 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHh
Q 028804 11 QYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALI-----RKMDLEAR 60 (203)
Q Consensus 11 e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l-----~qme~Ev~ 60 (203)
++-...+++.+.+..|.+ .+++|...+++++.+|+++-..| ..|++|.|
T Consensus 22 eL~kQk~eL~~~l~~l~~-e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~R 75 (101)
T 1d7m_A 22 QLIKQKDQLNSLLASLES-EGAEREKRLRELEAKLDETLKNLELEKLARMELEAR 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344445566666666655 45788899999999998875444 34555544
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.36 E-value=44 Score=26.70 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=4.5
Q ss_pred chhhhhhh
Q 028804 187 GWCYKSLI 194 (203)
Q Consensus 187 ~~c~~~~~ 194 (203)
+.|-+.|+
T Consensus 202 ~GC~~~lp 209 (256)
T 3na7_A 202 GGCFIRLN 209 (256)
T ss_dssp TTTCCBCC
T ss_pred CCCCeeeC
Confidence 55666553
No 26
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.73 E-value=23 Score=23.32 Aligned_cols=44 Identities=7% Similarity=-0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHH
Q 028804 8 YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADAL 51 (203)
Q Consensus 8 ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~ 51 (203)
...+++..+..+...+..++......+..++..+-..|....+-
T Consensus 12 RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~ 55 (80)
T 1nlw_A 12 RRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDS 55 (80)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45667777777777765554332223444444444444433333
No 27
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=62.64 E-value=40 Score=24.15 Aligned_cols=79 Identities=10% Similarity=0.212 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDA-------DALIRKMDLEARSLQPNVKAMLLSKLRE 76 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea-------~~~l~qme~Ev~~~p~~~r~~~~~kv~~ 76 (203)
-|+..|.+|..|...=......- +.....+...|.+- .+-+..+.- +.. -.-++.+|...++.
T Consensus 10 ~l~~LEaeyq~L~~kE~qrynqe--------ka~AE~A~~~L~~~~~m~~~i~ek~~~i~~-~~~-~~~yK~eY~~L~Kk 79 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFNEE--------RAQADAARQALAQNEQVYNELSQRAQRLQA-EAN-TRFYKSQYQELASK 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-SCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccHHHHHHHHHHHH
Confidence 46666777776665554443322 22333333333333 333333322 111 13459999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028804 77 YKTDLNNLKNEVKRVT 92 (203)
Q Consensus 77 yk~~l~~l~~e~~~~~ 92 (203)
|+.-+..|.+++....
T Consensus 80 Yk~~~~~Ld~eI~~qe 95 (119)
T 2avr_X 80 YEDALKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987644
No 28
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=61.12 E-value=18 Score=22.93 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.3
Q ss_pred hHHHHHH-HHHHHHHHHHHHhhhhhcCChH--HHHHHHHHHHhhHHH
Q 028804 4 VFEGYER-QYCELSAGLSRKCTAASALDGE--LKKQKLSEIKTGLDD 47 (203)
Q Consensus 4 ~fe~ye~-e~~~l~~~i~~~l~~l~~~~~~--~r~~~i~~i~~~l~e 47 (203)
+..+|.. -|.....+|.+-|..++..++. -+..++..+...+.+
T Consensus 15 ~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~ 61 (64)
T 2db7_A 15 LAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61 (64)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhc
Confidence 4578885 9999999999999999876654 677777777655543
No 29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.88 E-value=71 Score=27.43 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 028804 34 KKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (203)
Q Consensus 34 r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p 63 (203)
....-+.++++|++++..+-+.+-.+..+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 344556677888888888877777666543
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.02 E-value=47 Score=23.47 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=11.2
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 028804 127 TERLNHSTDRIKESRRTML 145 (203)
Q Consensus 127 ~~~L~~~~~~L~~s~r~a~ 145 (203)
--.|+..++-|.++.|++.
T Consensus 58 iReLEq~NDDLER~~R~t~ 76 (111)
T 2v66_B 58 VRELEQANDDLERAKRATI 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHH
Confidence 3345566666666666653
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.62 E-value=92 Score=26.76 Aligned_cols=26 Identities=4% Similarity=0.057 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhc
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASA 28 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~ 28 (203)
.++...+.+|..-+++|+..|..+..
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 46778888899999999888887754
No 32
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=56.66 E-value=41 Score=22.47 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028804 8 YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLE 58 (203)
Q Consensus 8 ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~E 58 (203)
+...++..+..+...+..++......+..++..+-..|.....-...+..+
T Consensus 17 RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 17 RRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666653333455556555555555554444444433
No 33
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.59 E-value=52 Score=25.07 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 67 KAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 67 r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
=.++..++...+.++....-++.
T Consensus 115 I~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.15 E-value=68 Score=24.79 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 028804 128 ERLNHSTDRIKESRRTMLET 147 (203)
Q Consensus 128 ~~L~~~~~~L~~s~r~a~Et 147 (203)
-.|+..++-|.++.|++..+
T Consensus 112 reLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 112 RELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhh
Confidence 34555566666666665444
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.39 E-value=48 Score=22.80 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEV 88 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~~--~r~~~~~kv~~yk~~l~~l~~e~ 88 (203)
+...++.-..+.++=|++|+-|+..+... .-..+++|..-+..+|+.+.+.|
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555566666666666654422 22344455555555555555444
No 36
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.16 E-value=52 Score=23.17 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.+..+...|..|++.|..+..++..+-. ..+.+-..+|.-++..+.-++.+|..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777888888888777777665432 22444445666666677777777764
No 37
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=54.37 E-value=57 Score=23.83 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=45.8
Q ss_pred HHHHHHHHHH---HHHHHHHHhhhhhcC---Ch---HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHH------HHH
Q 028804 5 FEGYERQYCE---LSAGLSRKCTAASAL---DG---ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNV------KAM 69 (203)
Q Consensus 5 fe~ye~e~~~---l~~~i~~~l~~l~~~---~~---~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~------r~~ 69 (203)
+.++|..+.. -++++...+.+|... .+ +....+-+.+....+++-.+|.+|+ .-.+|++. |..
T Consensus 23 L~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LD--s~~ip~~~~~~R~kRK~ 100 (135)
T 1i6z_A 23 LKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEID--TMVLPEQFKDSRLKRKN 100 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--cccCCccHHHHHHHHHH
Confidence 3445555444 555666666666431 12 2223333444444444444444443 23345432 667
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcc
Q 028804 70 LLSKLREYKTDLNNLKNEVK----RVTSG 94 (203)
Q Consensus 70 ~~~kv~~yk~~l~~l~~e~~----~~~~~ 94 (203)
+-.+|..+-...+++..++. ++++.
T Consensus 101 lV~~iQ~~L~~~D~l~~~~~~~~~~~q~~ 129 (135)
T 1i6z_A 101 LVKKVQVFLAECDTVEQYICQETERLQST 129 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777777777776666 55543
No 38
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=52.83 E-value=25 Score=23.76 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccc
Q 028804 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSS 177 (203)
Q Consensus 135 ~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~ 177 (203)
+.|...+.-+.|+.+|=..-.+.+-...|+|..-.++-.+..+
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3444455555555555555555555556666555554444443
No 39
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=51.93 E-value=59 Score=22.81 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHH
Q 028804 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS----LQPNVKAMLLSKLREYKTD 80 (203)
Q Consensus 5 fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~----~p~~~r~~~~~kv~~yk~~ 80 (203)
-+.|...|..-...|...|+.++ ....++++-.-|..|+-+|.. +|+-. +++|...
T Consensus 33 ~~~F~~~F~~~~~~Ie~~l~~~~-------------~~~~ld~i~~~I~~Lqk~v~das~fLp~YD-------~R~~q~~ 92 (111)
T 2l3l_A 33 SHFFVATFARERAAVEELLERAE-------------SVERLEEAASRLQGLQKLINDSVFFLAAYD-------LRQGQEA 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-------------SHHHHHHHHHHHHHHHHHHHHSTTTSCHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc-------------hhhHHHHHHHHHHHHHHHHHHHhhhccHHH-------HHHHHHH
Confidence 34566677777777777777553 223455556666666666664 46654 5666666
Q ss_pred HHHHHHHHHH
Q 028804 81 LNNLKNEVKR 90 (203)
Q Consensus 81 l~~l~~e~~~ 90 (203)
++.|+..+..
T Consensus 93 i~~L~~~l~e 102 (111)
T 2l3l_A 93 LARLQAALAE 102 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 40
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=51.84 E-value=54 Score=22.33 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
.+++|-+.+..+=.++++.+..|...+ ..+...+.+++..++.+--...+.+++.|.....+|.+.=..+..
T Consensus 5 yledyld~ie~LP~El~r~~~~irelD--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~ 76 (104)
T 4afl_A 5 YLEHYLDSIENLPFELQRNFQLMRDLD--------QRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKE 76 (104)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHH
Confidence 455666555555566666555553221 122333333444444443334466777776555555554444444
Q ss_pred HHHH
Q 028804 84 LKNE 87 (203)
Q Consensus 84 l~~e 87 (203)
+..+
T Consensus 77 l~dE 80 (104)
T 4afl_A 77 FGDD 80 (104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 41
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=51.35 E-value=83 Score=24.40 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=43.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchh
Q 028804 127 TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLI 179 (203)
Q Consensus 127 ~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i 179 (203)
...+......+......+.+..++-..|..-...|.+.+..+...+..+..++
T Consensus 204 ~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v 256 (279)
T 3c98_B 204 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 256 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888899999999999999999999888887776543
No 42
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.28 E-value=56 Score=22.38 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 16 SAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 16 ~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+.|..++..+.. ..+.-......++..++.++.-..+.+-|+.+ ++.|+.....++..++..+..+.
T Consensus 4 MdaIKkKm~~lk~-e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s--------L~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 4 MDAIKKKMQMLKL-DKENALDRAEQAEADKKAAEERSKQLEDDIVQ--------LEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766643 12222334556777888888888888888775 45556666666666666665443
No 43
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=50.99 E-value=89 Score=24.59 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 10 RQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 10 ~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
++++.--..+...|++||.--+ +|..-+.-|..--+.++.+|+...--....|+..+..+..+- .++=+..+.|.
T Consensus 94 qel~~rA~~LK~iLSrIPdEI~-dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~K----reFVkySKrFS 168 (213)
T 3ajm_A 94 QDLNEKARALKQILSKIPDEIN-DRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQK----KEFVKYSKSFS 168 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH----HHHHHHhhHhh
Confidence 4555556667777888887433 444444444444444556666666666667766455444444 44444444443
No 44
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.93 E-value=65 Score=23.01 Aligned_cols=86 Identities=14% Similarity=0.245 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
-|+..+.+|..+...=...+..-.. ..+.....+..-.....++.+-+..|.-+... .-++..|...+++|+..++.
T Consensus 10 ~l~~Leae~q~L~~~E~qry~~eka-~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~--~~yk~~y~~l~k~Y~~~~ke 86 (119)
T 3etw_A 10 ELQALDAEYQNLANQEEARFNEERA-QADAARQALAQNEQVYNELSQRAQRLQAEANT--RFYKSQYQELASKYEDALKK 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHH
Confidence 3666777777766666665554432 11222233333444444445555554443322 23478999999999999999
Q ss_pred HHHHHHHHh
Q 028804 84 LKNEVKRVT 92 (203)
Q Consensus 84 l~~e~~~~~ 92 (203)
|.++++.-.
T Consensus 87 Ld~~ik~qe 95 (119)
T 3etw_A 87 LEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987644
No 45
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.62 E-value=1.2e+02 Score=26.16 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhc
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASA 28 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~ 28 (203)
+.+..|+..+..-+.++...+..+.+
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 34566666666666666666555543
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.09 E-value=59 Score=22.26 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhh
Q 028804 39 SEIKTGLDDADALIRKMDLEARSLQ--PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLE 106 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~~~p--~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~ 106 (203)
..+...|..|++.|..+...+..+- ..........+.-++..+.-++.+|..=+ ++|+.+-+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aER------adREkl~~ 68 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAER------HAREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHh
Confidence 3455566666666666665555442 12233444666666677777777776533 46666644
No 47
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=45.59 E-value=1.5e+02 Score=26.30 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q 028804 9 ERQYCELSAGLSRKCTAASAL 29 (203)
Q Consensus 9 e~e~~~l~~~i~~~l~~l~~~ 29 (203)
|.+|+.-+...+..+.++...
T Consensus 4 ~a~yq~~la~yq~elarvqka 24 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKA 24 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655443
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.77 E-value=66 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
++|.+|..+++.-|.++..|+..+..
T Consensus 40 nErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 40 NERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 67999999999999999999988864
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.02 E-value=67 Score=20.92 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 18 GLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 18 ~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.|..++..+.. ..+.-..-+..++..+.+++.-..+.+-|+. .++.|+..+..++......+..+.
T Consensus 3 ~ikkKm~~lk~-e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~--------~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 3 AIKKKMQMLKL-DKENALDRAEQAEADKKAAEERSKQLEDELV--------ALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555532 1122233344566666666666666666654 466677777777777776666544
No 50
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=42.57 E-value=79 Score=22.97 Aligned_cols=65 Identities=6% Similarity=0.005 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028804 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLRE 76 (203)
Q Consensus 12 ~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~ 76 (203)
...+.++....|..|...++..-..+-.-+....+.|+.+++-.+-.+..+|+..|-...-=+.+
T Consensus 5 ~~~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~Ds 69 (144)
T 1sz9_A 5 TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDS 69 (144)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHH
Confidence 34455555555555532233333344455667788999999999999999999887665544333
No 51
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=42.15 E-value=13 Score=26.92 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-hcCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 028804 4 VFEGYERQYCELSAGLSRKCTAA-SALDGELKKQKLSEIKTGLDDADALIRKM 55 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l-~~~~~~~r~~~i~~i~~~l~ea~~~l~qm 55 (203)
.|..|..++...-.+++.....+ +..+++++...-+++..+..+....-..+
T Consensus 31 ~~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~ 83 (143)
T 1u2m_A 31 EFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAF 83 (143)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556655555555554433 23344555444444444444444433333
No 52
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.94 E-value=1.9e+02 Score=25.48 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALI 52 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l 52 (203)
+.|..|+..+..-++++...|..|.+.+ .+-..++..|+..+..++...
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~T-s~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTS-SSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhccccCCC
Confidence 5678899999999999999999886533 233445555555555554433
No 53
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.83 E-value=63 Score=25.18 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 47 DADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 47 ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
|-.+++.|++.|..++-+ .-+.+..+....+.+++.|+..+.++...
T Consensus 27 ~~~~~~~~~~a~~~s~~s-~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVS-EYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 446678888888877654 45788889999999999999999998754
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.90 E-value=86 Score=21.28 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 16 SAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 16 ~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.+.|..++..+.. ..+.-......++..++.++.-..+.+-|+.+ ++.|+.....++..+...+..+
T Consensus 4 md~iKkKm~~lk~-e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~s--------L~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 4 MEAIKKKMQMLKL-DKENAIDRAEQAEADKKQAEDRCKQLEEEQQG--------LQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777765542 12222334556777777777777777777765 4455555555655555555443
No 55
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=39.04 E-value=79 Score=20.62 Aligned_cols=63 Identities=8% Similarity=0.173 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 29 LDGELKKQKLSEIKTGLDDADALIRKMDLEARSL----QPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 29 ~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
.+|++-......+...-.+++..+..|.-.+..+ .......|.....+++..+.++...|...
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i 74 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDI 74 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777777754 33445566666666666666666555544
No 56
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=38.69 E-value=90 Score=21.14 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=10.7
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q 028804 36 QKLSEIKTGLDDADALIRK 54 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~q 54 (203)
..|++++....++..-+.+
T Consensus 25 ~~irelD~~~~~~~~~i~~ 43 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAEIDK 43 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555443
No 57
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=38.43 E-value=1.3e+02 Score=23.69 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHhhhhccccc
Q 028804 115 VSADQRGRLLMS---TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQ------RQSLLHAHNTVCPS 175 (203)
Q Consensus 115 ~~~~~r~~ll~~---~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~Q------Re~L~~~~~~l~~~ 175 (203)
.+...++.+|.. .++|..-...|.+-..++.=...|...+-+++..| ||||+-+++.|.+.
T Consensus 182 l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 182 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455677777763 45666666667777777766777888888888887 78999999888764
No 58
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=38.16 E-value=70 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.164 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhcC
Q 028804 50 ALIRKMDLEARSL 62 (203)
Q Consensus 50 ~~l~qme~Ev~~~ 62 (203)
++|.+.=+.+=++
T Consensus 63 E~L~k~LLkLD~I 75 (111)
T 1uk5_A 63 EYLTKELLALDSV 75 (111)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCc
Confidence 3444444444444
No 59
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=37.62 E-value=40 Score=21.56 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
.+.+++..|+.+...|+.+|.|++.
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678999999999999999999983
No 60
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=35.78 E-value=1.4e+02 Score=25.92 Aligned_cols=55 Identities=4% Similarity=0.064 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEAR-----SLQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~-----~~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
..-...++-.+..|.++.++|.+|.--+- ...+..|..+...+++++.++..+-.
T Consensus 28 ~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 28 NDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466788889999999999999875543 23567899999888888877776653
No 61
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=34.28 E-value=1.4e+02 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 29 LDGELKKQKLSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 29 ~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
..+..|..+.+.+...+..++.=|.+++.+.+.+
T Consensus 22 VTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~ 55 (150)
T 4dci_A 22 VTPTWKEEAEREISNGIANADQQLAQLEQEGQTV 55 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999998888753
No 62
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=33.67 E-value=77 Score=20.30 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 136 ~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.+....+.+.|..++=.....=...|.+.|.++...+..+..++.
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (77)
T 1jth_B 11 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344555556666666667777778999999999999988887665
No 63
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=32.86 E-value=83 Score=21.11 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.1
Q ss_pred HHHHHHHHHhcC
Q 028804 51 LIRKMDLEARSL 62 (203)
Q Consensus 51 ~l~qme~Ev~~~ 62 (203)
+|.+.=+++=++
T Consensus 45 ~L~k~LLkLD~I 56 (87)
T 1m62_A 45 MLTKELLELDSV 56 (87)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCc
Confidence 444444444444
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.77 E-value=1.1e+02 Score=20.31 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028804 3 QVFEGYERQYCELSAGLS 20 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~ 20 (203)
++|+..|.-++..++.|.
T Consensus 6 ElleqLE~KIq~avdtI~ 23 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTIT 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555544444444443
No 65
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=32.09 E-value=1e+02 Score=19.85 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 29 LDGELKKQKLSEIKTGLDDADALIRKMDLEARSL----QPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 29 ~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+|++-......+...-.+++..+..|.-.+..+ .......|.....+++..+.++...|..+.
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 76 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVG 76 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777777777777777653 445567777777777777777776666543
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.75 E-value=2.9e+02 Score=24.86 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=8.3
Q ss_pred HHHHHhhHHHHhh
Q 028804 156 QDLHQQRQSLLHA 168 (203)
Q Consensus 156 ~~L~~QRe~L~~~ 168 (203)
..|+.||..|++-
T Consensus 138 snLedq~~kIQRL 150 (562)
T 3ghg_A 138 KNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566777777763
No 67
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.71 E-value=1.6e+02 Score=21.85 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 41 IKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev~~~p~--~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
++..++.++.-+.+.+.++..+.| ..-.+...-+.+.+.|+...+..+..+-
T Consensus 74 A~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 74 AKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666667776643 3355666777777777777777766554
No 68
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=31.54 E-value=2e+02 Score=22.96 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 137 L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
+....+.+.|..+|=..+..=...|.+.|.++...+..+..++.
T Consensus 202 i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~ 245 (267)
T 1dn1_B 202 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 245 (267)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555556667899999999999888877554
No 69
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=30.30 E-value=94 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.4
Q ss_pred HHHHHHHHHhcC
Q 028804 51 LIRKMDLEARSL 62 (203)
Q Consensus 51 ~l~qme~Ev~~~ 62 (203)
+|.+.=+++=++
T Consensus 58 ~L~k~LLkLD~I 69 (99)
T 1m7k_A 58 MLTKELLELDSV 69 (99)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCc
Confidence 444444444444
No 70
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.20 E-value=1.4e+02 Score=20.88 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHH
Q 028804 2 SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP------NVKAMLLSKLR 75 (203)
Q Consensus 2 s~~fe~ye~e~~~l~~~i~~~l~~l~~~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~------~~r~~~~~kv~ 75 (203)
..+|+.|=.++...+..+...=.++... -+.-+..+.++..+.++--..-..+|.++..+-. -.|..+..++.
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~le-ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVE-RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 4678999999999888888764444211 0111234455556665555555666666554422 12666777777
Q ss_pred HHHHHHHHHHHHH
Q 028804 76 EYKTDLNNLKNEV 88 (203)
Q Consensus 76 ~yk~~l~~l~~e~ 88 (203)
.++.++.=+++-+
T Consensus 94 sL~eEl~FLKk~h 106 (119)
T 3ol1_A 94 SLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
No 71
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=29.58 E-value=1.8e+02 Score=23.23 Aligned_cols=33 Identities=6% Similarity=-0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCH
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQP 64 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~ 64 (203)
.+...++.+++..|+++.+.++++.-++...|.
T Consensus 67 ~~~~~~~~eA~~~l~~i~~~~~~L~~~l~~~~~ 99 (249)
T 3axj_A 67 SQISAACGLARKQVELCAQKYQKLAELVPAGQY 99 (249)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 346678899999999999999999888887774
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.55 E-value=1.5e+02 Score=20.99 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 31 ~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
+++|-.+|..+...++....-++.+-.|.+.++ ..|..+|.++..+|..-+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v----~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVV----LQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 467777888898888888888888888877433 345555555555555544
No 73
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=29.50 E-value=1e+02 Score=19.12 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 028804 118 DQRGRLLMSTERLNHSTDRIKESRRTM 144 (203)
Q Consensus 118 ~~r~~ll~~~~~L~~~~~~L~~s~r~a 144 (203)
.||+++....+.+......|..|.+++
T Consensus 34 ~QREql~~t~~~l~~~d~~l~~s~k~L 60 (65)
T 1gl2_C 34 EQRDQLERTKSRLVNTNENLSKSRKIL 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhHHHhHHHhHHhHHHHHHHHH
Confidence 345555555555555555555554443
No 74
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=29.28 E-value=1.1e+02 Score=19.25 Aligned_cols=30 Identities=7% Similarity=0.426 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 31 GELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 31 ~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
|.+|...+..|+..+.++.+++..|..-|.
T Consensus 1 ~~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 1 GSMRETAIQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999988886
No 75
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.92 E-value=78 Score=19.13 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
..+..+|.++..++..++.++..++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655444
No 76
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=28.88 E-value=1.4e+02 Score=20.38 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 13 CELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLD-DADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 13 ~~l~~~i~~~l~~l~~~-~~~~r~~~i~~i~~~l~-ea~~~l~qme~Ev~~~p~-~~r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
..-+..+...+.+|.+. ++.+ +...|+ +..--+.+|.-+++.++. +.+..+...+......+..+++.+.
T Consensus 16 s~niq~l~k~~~qlGTkrD~~~-------LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 16 AEQSRVLEKECTKIGSKRDSKE-------LRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHH-------HHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHH-------HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334566666677653 2222 333333 333444444444444432 2455555555555555555555554
Q ss_pred H
Q 028804 90 R 90 (203)
Q Consensus 90 ~ 90 (203)
.
T Consensus 89 e 89 (97)
T 1hs7_A 89 Q 89 (97)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=28.85 E-value=1.2e+02 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 028804 4 VFEGYERQYCELSAGLSRKCTAA 26 (203)
Q Consensus 4 ~fe~ye~e~~~l~~~i~~~l~~l 26 (203)
.|...-.++...+..+...+..+
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 78
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=28.51 E-value=96 Score=19.83 Aligned_cols=29 Identities=7% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
.+|...+..++..+.+..++...|..-|.
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 34 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVE 34 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999988886
No 79
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.44 E-value=1.5e+02 Score=20.72 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 65 NVKAMLLSKLREYKTDLNNLKNEVK 89 (203)
Q Consensus 65 ~~r~~~~~kv~~yk~~l~~l~~e~~ 89 (203)
+.|-.+..+..++..++..|++.+.
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655543
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.20 E-value=2e+02 Score=24.62 Aligned_cols=22 Identities=5% Similarity=0.318 Sum_probs=9.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 028804 38 LSEIKTGLDDADALIRKMDLEA 59 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev 59 (203)
|+.++..|+....-|++||+-|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 81
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=27.90 E-value=1.4e+02 Score=20.58 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcC
Q 028804 50 ALIRKMDLEARSL 62 (203)
Q Consensus 50 ~~l~qme~Ev~~~ 62 (203)
++|.+.=+++=++
T Consensus 51 E~L~k~LLkLD~I 63 (99)
T 1ugo_A 51 RILTKQLFEIDSV 63 (99)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCc
Confidence 3343333333333
No 82
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=27.15 E-value=1.8e+02 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
-..+++++..++....-+..++.++..
T Consensus 20 lKkL~dveksv~~~~k~l~~l~~el~~ 46 (135)
T 1i6z_A 20 LKKLKDLEVSAEKIANHLQELNKELSG 46 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666654
No 83
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=27.12 E-value=1.2e+02 Score=28.90 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 36 QKLSEIKTGLDDADALIRKMDLE------ARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~qme~E------v~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.....+.+.+..+..-++.++-. +.++|+....+-+.|+..|+.++++++..+..
T Consensus 800 ~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (862)
T 1gax_A 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 860 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555544 44678888888899999999999999887764
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.84 E-value=1.4e+02 Score=19.74 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcC
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSL 62 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~ 62 (203)
++..++.+|++|=+.|.-+..|+..+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888777777776644
No 85
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=26.43 E-value=2.2e+02 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 028804 1 MSQVFEGYERQYCELSAGLSRKCTAASA 28 (203)
Q Consensus 1 Ms~~fe~ye~e~~~l~~~i~~~l~~l~~ 28 (203)
|+++++-|-+|-..++..+...|-.+..
T Consensus 5 ~~~~l~~F~~Ea~e~L~~l~~~Ll~le~ 32 (225)
T 2lp4_A 5 ISDFYQTFFDEADELLADMEQHLLDLVP 32 (225)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999988864
No 86
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.26 E-value=1.6e+02 Score=20.14 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 45 LDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 45 l~ea~~~l~qme~Ev~~~p~~--~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
-..++.....|+.|+..+... .-.....+.+.+|++..-|..++...
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455555566666655432 23344455555555555555555443
No 87
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=26.14 E-value=1.3e+02 Score=19.12 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hhhh
Q 028804 3 QVFEGYERQYCELSAGLSRK-CTAA 26 (203)
Q Consensus 3 ~~fe~ye~e~~~l~~~i~~~-l~~l 26 (203)
++|....++...++.-|... ++-+
T Consensus 9 elF~eLD~diReLLSlvheIKID~I 33 (69)
T 1skv_A 9 ELFEMLDEDVRELLSLIHEIKIDRI 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheeee
Confidence 69999999999999988885 4444
No 88
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.12 E-value=1.3e+02 Score=19.16 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 29 LDGELKKQKLSEIKTGLDDADALIRKMDLEARSL----QPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (203)
Q Consensus 29 ~~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~e~~~ 90 (203)
.+|++-......+...-.+++..+..|.-.+..+ .......+.....+.+..+.++...+..
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 74 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEG 74 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888888888888888888888876 3555667777555555555555444443
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.43 E-value=2.3e+02 Score=24.27 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=9.2
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 028804 41 IKTGLDDADALIRKMDLEA 59 (203)
Q Consensus 41 i~~~l~ea~~~l~qme~Ev 59 (203)
+...++.-+++..+++.|-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQ 430 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555544
No 90
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=25.03 E-value=3e+02 Score=22.97 Aligned_cols=54 Identities=6% Similarity=0.082 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARS-----LQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~-----~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
.-...+.-.+..|.++.++|.+|.--+-. .++..|..+...+.+++.++..+-+
T Consensus 50 da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~iAN 108 (326)
T 3k8w_A 50 DGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAE 108 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556777888889999999888755432 3567899999988888888877665
No 91
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=24.44 E-value=1.2e+02 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.292 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~ 60 (203)
.+|...+..++..+.+..+++..|..-|.
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 45 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999998887
No 92
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.74 E-value=2e+02 Score=20.36 Aligned_cols=24 Identities=4% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 69 MLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+...+.+|+..+..++.++..++
T Consensus 74 ~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 74 RYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666665544
No 93
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=23.72 E-value=1.6e+02 Score=19.19 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchh
Q 028804 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLI 179 (203)
Q Consensus 121 ~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i 179 (203)
++|-++.++|.++...+.++..+..++-.-=..=-+.|..=+..+..+.+.|......|
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l 70 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRIL 70 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHH
Confidence 34444555555555555555555555433222223444444455555544444444333
No 94
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.42 E-value=1.6e+02 Score=19.20 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Q 028804 47 DADALIRKMDLEARSL-QPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 47 ea~~~l~qme~Ev~~~-p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
=-+..+.+++-.++.+ +|..|.++++=..+...|++.++
T Consensus 34 yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 34 YYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456667777777777 67778888776666666665554
No 95
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.83 E-value=2.4e+02 Score=21.01 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhh
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLE 106 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~ 106 (203)
+-...++++-..-.+...+-..|+.|+. ..+..+...+..++...+.|+..+...-. ..|++||.
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~----~ik~~~~~~~~~l~~~i~~l~~~l~~y~e-----~~r~elf~ 81 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAID----AAKARASQKSAPLLARRKELEDGVATFAT-----LNKTEMFK 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHhcC
Confidence 3344555555544555555555666665 56788888899999999999988887653 47889975
No 96
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.79 E-value=1.9e+02 Score=21.84 Aligned_cols=59 Identities=8% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcc
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK----NEVKRVTSG 94 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~----~e~~~~~~~ 94 (203)
...+.+++.++..+..=++.+..-...+. ..+..+..+|.....+...+. -+++.++..
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~-~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVE-GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566676776666666665544333322 457788888888888888777 666666643
No 97
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.70 E-value=85 Score=15.79 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028804 74 LREYKTDLNNLKNEV 88 (203)
Q Consensus 74 v~~yk~~l~~l~~e~ 88 (203)
+-.++.++..|+.++
T Consensus 9 vgelkgevralkdev 23 (27)
T 3v86_A 9 VGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 333334444444443
No 98
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=22.68 E-value=1.6e+02 Score=18.82 Aligned_cols=62 Identities=6% Similarity=0.164 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSL----QPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (203)
Q Consensus 30 ~~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~----p~~~r~~~~~kv~~yk~~l~~l~~e~~~~ 91 (203)
+|++-......+...-.+++..+..|.-.+..+ .......|.....+++..+.++...|..+
T Consensus 7 ~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 72 (97)
T 2vs0_A 7 SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEI 72 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566667777777777777777776653 22334555555566666666666555544
No 99
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=22.60 E-value=3.6e+02 Score=22.92 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHh-c----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEAR-S----LQPNVKAMLLSKLREYKTDLNNLKN 86 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~-~----~p~~~r~~~~~kv~~yk~~l~~l~~ 86 (203)
.-...++-.+..|.++.++|.+|.--+- . .++..|..+...+.+++.++..+-.
T Consensus 17 ~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~ 75 (398)
T 1io1_A 17 DGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSG 75 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355677788888888888888874443 2 3467899999999998888886543
No 100
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=22.58 E-value=1.4e+02 Score=18.35 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 138 ~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
....+.+.|..++=.....=...|.+.|.++...+..+..++.
T Consensus 12 ~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 54 (65)
T 1gl2_B 12 RQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQ 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566566566666667899999999999988887665
No 101
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.57 E-value=1.2e+02 Score=19.30 Aligned_cols=26 Identities=12% Similarity=0.376 Sum_probs=13.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhc
Q 028804 36 QKLSEIKTGLDDADALIRKMDLEARS 61 (203)
Q Consensus 36 ~~i~~i~~~l~ea~~~l~qme~Ev~~ 61 (203)
..|++++..|.+.++.|..+..++..
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 102
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=22.34 E-value=2.2e+02 Score=20.44 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=80.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhc---CcC
Q 028804 35 KQKLSEIKTGLDDADALIRKMDLEARSLQ-PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES---GMA 110 (203)
Q Consensus 35 ~~~i~~i~~~l~ea~~~l~qme~Ev~~~p-~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~---~~~ 110 (203)
...+..+...|.-..+.+..++--+..+. +..|..+.....+++.-...|+..+..+-... .....+.|. .+.
T Consensus 10 ~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p---~~~~s~~g~~hr~~~ 86 (153)
T 4etr_A 10 DDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKP---KDSTSFAGDLHRRWV 86 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCcHHHHHHHHHH
Confidence 34566677777777888888888777774 67788888888898888888988888764332 111112111 010
Q ss_pred Ccc-cccHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccc
Q 028804 111 DAM-MVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPS 175 (203)
Q Consensus 111 ~~~-~~~~~~r~~ll~~~~~L~~~~~~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~ 175 (203)
+-. ..+......+|.. +.++-.....+.+-+.+ ......+..-|..|...++..++.+...
T Consensus 87 ~lks~~~~~~~~~iL~~---~~~gE~~~~~~Y~~al~-~~lp~~~r~ll~~q~~~~~~~~d~~~~L 148 (153)
T 4etr_A 87 DLKSLVTGKDEEAVLNE---CERGEDVAKHRYQAALE-KSLPAEIHQVIERQYQGVLRHHDRVRAL 148 (153)
T ss_dssp ----------CHHHHHH---HHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHH---HHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011112234432 33344445555555555 3477888888999999999988877643
No 103
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.26 E-value=2.2e+02 Score=20.33 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 37 KLSEIKTGLDDADALIRKMDLEARSLQ-------PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 37 ~i~~i~~~l~ea~~~l~qme~Ev~~~p-------~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+-.+++..|+.++.++.+........+ ...+.++..-+...+.+|..|.+.+.-+.
T Consensus 32 Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888887764443322 23477888888888888888888887654
No 104
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.93 E-value=2.1e+02 Score=20.09 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 69 MLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 69 ~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.+...+.+|+..+..++.++..++
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344455555555666666655544
No 105
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.68 E-value=1.1e+02 Score=16.89 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 68 AMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 68 ~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+++..||.++..+...|+.++.+++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777777777776654
No 106
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=21.55 E-value=2.8e+02 Score=21.41 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARS-----LQPNVKAMLLSKLREYKTDLNNLK 85 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~-----~p~~~r~~~~~kv~~yk~~l~~l~ 85 (203)
.-...+...+..|.++.++|.+|.--+-. .++..|..+...+++++.++..+-
T Consensus 30 ~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~a 87 (248)
T 2d4x_A 30 FATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLA 87 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888888888888765543 345678888887777776665544
No 107
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.50 E-value=1.6e+02 Score=18.38 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccccccchhH
Q 028804 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTVCPSSSLIV 180 (203)
Q Consensus 136 ~L~~s~r~a~Ete~iG~~Il~~L~~QRe~L~~~~~~l~~~d~~i~ 180 (203)
.+....+.+.|..++=.....=...|.+.|.++...+..+..++.
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666677899999999999988887665
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.35 E-value=1.8e+02 Score=20.13 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhhHHHhhc
Q 028804 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES 107 (203)
Q Consensus 38 i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~~~~~~~R~~L~~~ 107 (203)
+.-+...|.+.++.+.++..|.+.- ...+...|.....|+.++..++... .+|++|+..
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK--------~re~e~~Kr~~~~L~~~~~~lk~~L---~qRD~LI~E 90 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEK--------NKEFEREKHAHSILQFQFAEVKEAL---KQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---HTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3445555666666666555555421 2224445556666666666655432 467777754
No 109
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.33 E-value=1.7e+02 Score=18.72 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p----~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.-......+.....+++..|..|+-.+..+. ......|.....++.....++..-|..+.
T Consensus 9 ~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~ 72 (94)
T 3fav_B 9 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLA 72 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777888877777653 23355566666666666666666655543
No 110
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.21 E-value=1.8e+02 Score=19.11 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 028804 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (203)
Q Consensus 33 ~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~ 83 (203)
++..+.-++++.-..+++.-..+|-|++ .|..+...+..+|.+++.
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~-----~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEML-----QREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHH
Confidence 4455566677777777777777777765 355555555554444443
No 111
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=21.08 E-value=1.8e+02 Score=18.97 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 32 ~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p----~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
+.-.....++...-.+++..|..|+-.+..+. ......|.....+++....++..-|..+.
T Consensus 10 ~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 74 (101)
T 3fav_A 10 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 74 (101)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777888888888888886653 45567777777777777777777666554
No 112
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.67 E-value=3.6e+02 Score=22.24 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 39 SEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 39 ~~i~~~l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
...-..+++.++-++.+|-++..-|. .....++-.++.++-.+++.+...+
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~~~~~---~~~l~~l~~lrr~l~~lrr~l~p~~ 241 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVLERPE---KETVQRTHQLKRNLVELRKTIWPLR 241 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777778888888776553 3456678888888888888776543
No 113
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.51 E-value=1.9e+02 Score=18.86 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 31 ~~~r~~~i~~i~~~l~ea~~~l~qme~Ev~~~p----~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
|++-......+...-.++...|..|+-.+..+. ......|.....+++....++..-|..+.
T Consensus 2 peel~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777888888888887664 35567777777777777777777776654
No 114
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.29 E-value=3.3e+02 Score=21.70 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028804 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (203)
Q Consensus 46 ~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~ 92 (203)
.-+..+.+.+.-.+..+.|.-+..|....+.|..+|+.|..+++..-
T Consensus 110 ~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l 156 (282)
T 3mfq_A 110 PLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKEL 156 (282)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667778888899999999999999999999998653
No 115
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.26 E-value=2e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028804 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (203)
Q Consensus 45 l~ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~~ 94 (203)
..-+..+.+.+.-.+..+.|.-+..|....+.|..+|+.|..+++..-..
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455556666666666778889999999999999999999999876443
No 116
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.26 E-value=2e+02 Score=22.92 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 48 a~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
+..+.+.+--.+..+.|.-+..|....+.|..+|+.|..+++..-.
T Consensus 125 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~ 170 (284)
T 2prs_A 125 ARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELA 170 (284)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555556667788999999999999999999999987643
No 117
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.20 E-value=2e+02 Score=23.48 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 47 DADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 47 ea~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
-+..+.+.+.-.+..+.|.-+..|....+.|..+|+.|..+++..-.
T Consensus 140 n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~ 186 (312)
T 2o1e_A 140 LAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAK 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555666677888999999999999999999999987643
No 118
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.02 E-value=2e+02 Score=22.95 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028804 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (203)
Q Consensus 48 a~~~l~qme~Ev~~~p~~~r~~~~~kv~~yk~~l~~l~~e~~~~~~ 93 (203)
+..+.+.+.-.+..+.|.-+..|....+.|..+|+.|..+++..-.
T Consensus 128 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~ 173 (284)
T 3cx3_A 128 AGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFE 173 (284)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555667788999999999999999999999987543
Done!