BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028805
MVSQDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELK
KQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLES
VGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNIL
LFIWQIPTGIDIVFKVLEFTKWP

High Scoring Gene Products

Symbol, full name Information P value
AT3G61870 protein from Arabidopsis thaliana 2.8e-66

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028805
        (203 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079517 - symbol:AT3G61870 "AT3G61870" species...   674  2.8e-66   1


>TAIR|locus:2079517 [details] [associations]
            symbol:AT3G61870 "AT3G61870" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009706 "chloroplast inner membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009706
            GO:GO:0009534 EMBL:AL138642 InterPro:IPR025067 Pfam:PF13301
            EMBL:AY058164 EMBL:AY098978 IPI:IPI00519386 PIR:T47979
            RefSeq:NP_191746.1 UniGene:At.22960 IntAct:Q9M277 STRING:Q9M277
            PaxDb:Q9M277 PRIDE:Q9M277 EnsemblPlants:AT3G61870.1 GeneID:825360
            KEGG:ath:AT3G61870 TAIR:At3g61870 eggNOG:NOG08010
            HOGENOM:HOG000264449 InParanoid:Q9M277 OMA:FAYTLWA PhylomeDB:Q9M277
            ProtClustDB:CLSN2684100 Genevestigator:Q9M277 Uniprot:Q9M277
        Length = 272

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 126/203 (62%), Positives = 148/203 (72%)

Query:     4 QDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQV 63
             QDA A  GEFGILEGRS AL+HPIVMG L  YTLW GYLGWQWRRVRTIQ++I++LKKQ+
Sbjct:    70 QDAAAAGGEFGILEGRSFALIHPIVMGGLFAYTLWTGYLGWQWRRVRTIQSEISDLKKQL 129

Query:    64 KPTPVTPDGAPA---ETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLES 120
             KPTPV+PDG+ A    + PS  E++IQ+LTEERKEL+KGSYRD+H++AGS+LLGFGVLE+
Sbjct:   130 KPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEA 189

Query:   121 VGGGVNTYLRAGKLFPGPHLFXXXXXXXXXXXXXXXXXXMQKGSETXXXXXXXXXXXXXX 180
             V GGVNTYLR GKLFPGPHL+                  MQKG++T              
Sbjct:   190 VFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNDTARSLHIALNAVNVL 249

Query:   181 XXXWQIPTGIDIVFKVLEFTKWP 203
                WQIPTG+DIV KV EFTKWP
Sbjct:   250 LFIWQIPTGLDIVLKVFEFTKWP 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.139   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       168   0.00079  108 3  11 22  0.41    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.99u 0.08s 18.07t   Elapsed:  00:00:20
  Total cpu time:  17.99u 0.08s 18.07t   Elapsed:  00:00:22
  Start:  Thu May  9 15:01:38 2013   End:  Thu May  9 15:02:00 2013

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