BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028805
         (203 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2UG94|MED5_ASPOR Mediator of RNA polymerase II transcription subunit 5
           OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
           GN=NUT1 PE=3 SV=2
          Length = 1013

 Score = 35.8 bits (81), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 12  EFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPD 71
           EF  L+G    L+ P ++ SL+V   W G   W+     TI   +  L+  V P+ ++ D
Sbjct: 644 EFDTLKGGFEYLLEPFLLPSLVVALTWLGNHIWETESDPTIP--LKTLQSLVNPSSISGD 701

Query: 72  GAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLE 119
               E   + + I  + L E+ K++     R RH N   I     VLE
Sbjct: 702 A--REIHKTVLNITARSLDEQLKDI-----RSRHPNRADIKPILDVLE 742


>sp|Q8R3N1|NOP14_MOUSE Nucleolar protein 14 OS=Mus musculus GN=Nop14 PE=1 SV=2
          Length = 860

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 60 KKQVKPTPVTPDGAPAETAPSPVEIKIQQ 88
          ++QV   P    G PA+T P+P E+K+ +
Sbjct: 10 RRQVHKAPAGASGGPAKTNPNPFEVKVNR 38


>sp|O97507|FA12_PIG Coagulation factor XII OS=Sus scrofa GN=F12 PE=2 SV=1
          Length = 616

 Score = 30.8 bits (68), Expect = 6.4,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 35/143 (24%)

Query: 37  LWAG-YLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPV---------EIKI 86
           +W G  L WQ+ R+   Q  I E      P  +TP  +P+E   SP+         +   
Sbjct: 279 VWRGDQLSWQYCRLARCQAPIGE-----APPILTPTQSPSEHQDSPLLSREPQPTTQTPS 333

Query: 87  QQLT-------EERKELLKGS-------YRDRHYNAGSILLGFGVLESVGGGVNTYLRAG 132
           Q LT       E+R  L            R R  +   I+ G   L     G + Y+ A 
Sbjct: 334 QNLTSAWCAPPEQRGPLPSAGLVGCGQRLRKRLSSLNRIVGGLVALP----GAHPYIAA- 388

Query: 133 KLFPGPHLFAGAAITVLWALAAA 155
            L+ G +  AG+ I   W L AA
Sbjct: 389 -LYWGQNFCAGSLIAPCWVLTAA 410


>sp|Q1LLK8|TAL_RALME Transaldolase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123
           / DSM 2839) GN=tal PE=3 SV=1
          Length = 318

 Score = 30.4 bits (67), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 19/97 (19%)

Query: 45  QWRRVRTIQTDINE--LKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYR 102
           Q R+  T+  D  +  L KQ KP   T       T PS +   +Q+   E + LL+ + R
Sbjct: 6   QLRQFTTVVADTGDFQLMKQYKPQDAT-------TNPSLIFKAVQK--PEYRPLLEQAVR 56

Query: 103 DRHYNAG------SILLGFG--VLESVGGGVNTYLRA 131
           D H N+G       +L+ FG  +L  V G V+T + A
Sbjct: 57  DHHGNSGLDGVMDQLLIAFGCEILAIVPGRVSTEVDA 93


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,875,762
Number of Sequences: 539616
Number of extensions: 3311331
Number of successful extensions: 10273
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10270
Number of HSP's gapped (non-prelim): 14
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)