Query 028805
Match_columns 203
No_of_seqs 137 out of 159
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13301 DUF4079: Protein of u 100.0 2E-46 4.3E-51 313.5 17.1 172 21-196 2-175 (175)
2 PF03188 Cytochrom_B561: Eukar 98.6 2.3E-06 4.9E-11 66.6 13.2 91 100-190 33-130 (137)
3 smart00665 B561 Cytochrome b-5 98.5 6.6E-06 1.4E-10 64.4 13.1 90 101-190 33-129 (129)
4 cd08761 Cyt_b561_CYB561D2_like 98.4 9.9E-06 2.1E-10 67.1 12.8 93 100-192 56-157 (183)
5 cd08554 Cyt_b561 Eukaryotic cy 98.2 4.4E-05 9.5E-10 59.6 12.5 89 101-189 35-130 (131)
6 cd08760 Cyt_b561_FRRS1_like Eu 97.9 0.00041 8.9E-09 57.5 13.4 131 17-195 31-165 (191)
7 cd08763 Cyt_b561_CYB561 Verteb 97.9 0.00053 1.2E-08 56.2 13.2 90 102-191 41-137 (143)
8 cd08766 Cyt_b561_ACYB-1_like P 97.8 0.00078 1.7E-08 55.3 13.7 85 102-190 41-136 (144)
9 cd08764 Cyt_b561_CG1275_like N 97.7 0.0013 2.8E-08 57.4 14.0 90 101-190 57-155 (214)
10 cd08765 Cyt_b561_CYBRD1 Verteb 97.7 0.0013 2.8E-08 54.8 13.1 85 102-190 48-143 (153)
11 KOG1619 Cytochrome b [Energy p 97.4 0.0024 5.1E-08 57.1 12.0 99 102-200 89-194 (245)
12 cd08762 Cyt_b561_CYBASC3 Verte 97.3 0.0066 1.4E-07 51.9 13.0 84 103-190 72-166 (179)
13 PLN02680 carbon-monoxide oxyge 97.1 0.012 2.5E-07 52.2 12.7 91 103-195 81-178 (232)
14 PLN02810 carbon-monoxide oxyge 97.0 0.026 5.5E-07 50.2 14.0 89 102-190 80-175 (231)
15 PLN02351 cytochromes b561 fami 96.7 0.052 1.1E-06 48.5 12.9 85 102-190 84-178 (242)
16 PF03188 Cytochrom_B561: Eukar 93.4 0.75 1.6E-05 35.6 8.5 59 100-158 67-130 (137)
17 PF01292 Ni_hydr_CYTB: Prokary 92.8 1.1 2.4E-05 35.7 8.9 90 100-193 5-123 (182)
18 PF00033 Cytochrom_B_N: Cytoch 92.5 2 4.3E-05 34.0 10.1 90 100-189 45-171 (188)
19 cd08760 Cyt_b561_FRRS1_like Eu 91.4 1 2.2E-05 37.3 7.5 87 101-190 35-124 (191)
20 smart00665 B561 Cytochrome b-5 91.3 1.5 3.2E-05 34.2 7.8 83 109-191 3-91 (129)
21 cd08761 Cyt_b561_CYB561D2_like 90.8 3.2 6.9E-05 34.4 9.8 61 100-160 90-157 (183)
22 cd08554 Cyt_b561 Eukaryotic cy 90.3 2.9 6.3E-05 32.5 8.7 57 100-156 68-129 (131)
23 PF13172 PepSY_TM_1: PepSY-ass 89.3 0.77 1.7E-05 28.8 3.9 30 164-193 2-31 (34)
24 PF14362 DUF4407: Domain of un 85.1 14 0.00031 32.6 10.9 34 101-134 11-44 (301)
25 PF00033 Cytochrom_B_N: Cytoch 85.1 6.9 0.00015 30.9 8.1 93 100-192 7-127 (188)
26 cd08763 Cyt_b561_CYB561 Verteb 83.9 5.8 0.00013 32.6 7.3 58 100-157 73-135 (143)
27 PF02628 COX15-CtaA: Cytochrom 82.1 19 0.00042 31.8 10.5 84 109-192 103-189 (302)
28 PRK06743 flagellar motor prote 81.9 17 0.00036 32.6 10.0 130 16-152 16-186 (254)
29 PF13706 PepSY_TM_3: PepSY-ass 80.5 4.7 0.0001 25.9 4.5 30 164-193 1-30 (37)
30 PF10067 DUF2306: Predicted me 79.7 14 0.00031 28.2 7.7 36 100-135 4-39 (103)
31 PF09990 DUF2231: Predicted me 79.4 24 0.00053 26.5 9.4 60 137-196 41-101 (104)
32 TIGR02796 tolQ TolQ protein. T 79.2 19 0.0004 31.1 9.1 50 109-158 129-180 (215)
33 cd08766 Cyt_b561_ACYB-1_like P 78.1 15 0.00032 30.3 7.8 58 100-157 73-135 (144)
34 PF13301 DUF4079: Protein of u 71.8 19 0.00041 30.6 7.1 58 100-160 112-171 (175)
35 cd08764 Cyt_b561_CG1275_like N 71.5 59 0.0013 28.6 10.3 91 100-190 92-192 (214)
36 PRK08456 flagellar motor prote 71.3 27 0.00058 31.0 8.2 28 106-133 147-174 (257)
37 PLN02680 carbon-monoxide oxyge 69.0 27 0.00059 31.2 7.7 87 100-187 112-211 (232)
38 cd00284 Cytochrome_b_N Cytochr 68.1 34 0.00074 29.4 8.0 86 106-192 23-127 (200)
39 PRK09109 motC flagellar motor 67.8 87 0.0019 27.6 12.3 76 107-186 148-230 (246)
40 PRK10639 formate dehydrogenase 67.7 76 0.0016 26.9 11.0 25 165-189 147-171 (211)
41 COG1612 CtaA Uncharacterized p 67.5 1.1E+02 0.0023 28.5 11.8 81 111-192 115-199 (323)
42 PF13172 PepSY_TM_1: PepSY-ass 67.2 12 0.00025 23.4 3.7 29 100-128 4-32 (34)
43 COG4648 Predicted membrane pro 65.9 23 0.00051 30.9 6.5 49 148-196 70-118 (201)
44 PF13703 PepSY_TM_2: PepSY-ass 64.9 33 0.00071 25.2 6.4 28 101-128 60-87 (88)
45 PRK08990 flagellar motor prote 64.3 65 0.0014 28.7 9.3 75 107-185 145-226 (254)
46 PF02322 Cyto_ox_2: Cytochrome 64.2 1.2E+02 0.0025 27.9 11.2 38 15-53 147-185 (328)
47 CHL00070 petB cytochrome b6 63.7 30 0.00065 30.3 6.9 84 106-190 34-136 (215)
48 PRK03735 cytochrome b6; Provis 63.4 18 0.00038 31.9 5.5 84 106-190 42-144 (223)
49 PF01794 Ferric_reduct: Ferric 63.1 55 0.0012 24.1 7.4 79 101-180 33-123 (125)
50 PRK15028 cytochrome bd-II oxid 62.6 1.3E+02 0.0029 28.5 11.4 126 13-183 75-216 (378)
51 PF08285 DPM3: Dolichol-phosph 61.7 16 0.00035 28.1 4.3 35 29-63 42-77 (91)
52 cd08765 Cyt_b561_CYBRD1 Verteb 60.8 45 0.00098 27.9 7.1 58 100-157 80-142 (153)
53 PF02628 COX15-CtaA: Cytochrom 59.5 43 0.00093 29.7 7.3 46 104-149 255-300 (302)
54 TIGR02805 exbB2 tonB-system en 58.1 1.1E+02 0.0024 25.5 10.4 103 24-157 7-111 (138)
55 PF11377 DUF3180: Protein of u 57.6 53 0.0011 26.7 6.9 81 20-136 25-105 (138)
56 cd08762 Cyt_b561_CYBASC3 Verte 57.1 1.3E+02 0.0028 26.0 9.5 58 100-157 103-165 (179)
57 PF13703 PepSY_TM_2: PepSY-ass 56.5 72 0.0016 23.3 7.0 26 167-192 60-85 (88)
58 cd02862 NorE_like NorE_like su 55.8 74 0.0016 26.3 7.7 90 103-193 6-103 (186)
59 COG3658 Cytochrome b [Energy p 55.7 59 0.0013 28.4 7.1 78 31-133 41-121 (192)
60 PF01578 Cytochrom_C_asm: Cyto 53.9 1.3E+02 0.0028 25.0 11.2 85 103-194 126-210 (214)
61 PLN02810 carbon-monoxide oxyge 53.9 1.2E+02 0.0025 27.3 9.0 86 100-185 112-208 (231)
62 PF14015 DUF4231: Protein of u 52.8 93 0.002 23.1 8.6 48 100-151 13-60 (112)
63 PF02322 Cyto_ox_2: Cytochrome 52.0 1.9E+02 0.0042 26.5 12.5 129 13-186 70-210 (328)
64 PRK13685 hypothetical protein; 52.0 41 0.00088 30.2 5.9 18 21-38 4-21 (326)
65 PTZ00127 cytochrome c oxidase 51.1 83 0.0018 29.8 8.1 65 137-203 219-290 (403)
66 TIGR02125 CytB-hydogenase Ni/F 50.2 1.3E+02 0.0029 24.6 8.3 52 100-153 6-66 (211)
67 KOG1563 Mitochondrial protein 49.8 7.2 0.00016 35.9 0.8 40 27-66 58-98 (288)
68 PRK11513 cytochrome b561; Prov 49.7 1.4E+02 0.003 24.8 8.4 87 101-193 9-105 (176)
69 PF11026 DUF2721: Protein of u 49.3 1.3E+02 0.0029 23.9 9.0 30 26-55 5-36 (130)
70 COG1290 QcrB Cytochrome b subu 49.1 71 0.0015 30.4 7.3 85 105-190 38-141 (381)
71 PRK12482 flagellar motor prote 48.5 1E+02 0.0022 28.3 7.9 47 82-133 147-193 (287)
72 PRK09609 hypothetical protein; 47.3 63 0.0014 30.2 6.5 79 23-107 77-167 (312)
73 PF00032 Cytochrom_B_C: Cytoch 47.0 84 0.0018 23.7 6.2 53 139-191 29-84 (102)
74 PF01618 MotA_ExbB: MotA/TolQ/ 46.6 1.4E+02 0.0031 23.4 8.5 29 106-134 59-87 (139)
75 COG1291 MotA Flagellar motor c 46.2 95 0.0021 28.4 7.3 104 81-189 128-234 (266)
76 PRK06926 flagellar motor prote 45.8 1.2E+02 0.0026 27.5 7.9 106 20-133 32-179 (271)
77 COG3295 Uncharacterized protei 44.6 20 0.00043 31.8 2.7 33 158-190 16-48 (213)
78 PF04018 DUF368: Domain of unk 44.6 1.9E+02 0.0041 26.1 8.9 11 144-154 88-98 (257)
79 COG3402 Uncharacterized conser 44.4 1.2E+02 0.0026 26.0 7.2 54 109-163 21-74 (161)
80 TIGR01583 formate-DH-gamm form 43.9 1.9E+02 0.0042 24.2 11.8 26 165-190 145-170 (204)
81 PF07584 BatA: Aerotolerance r 43.7 1.2E+02 0.0026 21.7 7.0 21 22-42 3-24 (77)
82 PF10348 DUF2427: Domain of un 43.1 1.6E+02 0.0034 22.9 8.4 54 137-190 45-100 (105)
83 PRK10520 rhtB homoserine/homos 42.9 1.9E+02 0.0042 23.9 9.9 25 25-49 68-93 (205)
84 PF14358 DUF4405: Domain of un 42.6 72 0.0016 22.0 4.8 23 164-186 38-60 (64)
85 PF09946 DUF2178: Predicted me 42.1 1.7E+02 0.0037 23.0 8.8 20 90-109 53-72 (111)
86 TIGR03144 cytochr_II_ccsB cyto 41.3 2.4E+02 0.0051 24.5 12.6 49 107-155 153-201 (243)
87 COG1422 Predicted membrane pro 41.1 1.6E+02 0.0035 26.0 7.7 130 20-160 40-195 (201)
88 TIGR02125 CytB-hydogenase Ni/F 40.6 2E+02 0.0044 23.5 10.8 26 165-190 163-188 (211)
89 PRK09110 flagellar motor prote 40.3 2.6E+02 0.0056 25.5 9.2 46 82-132 147-192 (283)
90 PF11190 DUF2976: Protein of u 39.8 1.7E+02 0.0037 22.5 7.1 63 95-157 17-81 (87)
91 PF08946 Osmo_CC: Osmosensory 39.5 32 0.0007 23.8 2.5 22 82-108 24-45 (46)
92 PF03929 PepSY_TM: PepSY-assoc 38.6 50 0.0011 20.1 3.0 25 101-125 1-25 (27)
93 PRK10801 colicin uptake protei 38.5 2E+02 0.0043 25.1 8.0 53 107-159 129-182 (227)
94 TIGR02056 ChlG chlorophyll syn 38.3 95 0.0021 27.9 6.1 27 99-127 94-120 (306)
95 PRK13848 conjugal transfer pro 38.3 27 0.00059 27.6 2.3 32 78-113 4-35 (98)
96 PF04156 IncA: IncA protein; 38.1 74 0.0016 26.0 5.0 58 104-162 3-63 (191)
97 PRK08124 flagellar motor prote 37.9 3E+02 0.0064 24.6 10.3 27 107-133 149-175 (263)
98 PF05656 DUF805: Protein of un 37.7 1.7E+02 0.0037 22.0 6.6 20 98-117 6-25 (120)
99 PRK10171 hydrogenase 1 b-type 37.5 2.7E+02 0.0059 24.0 8.6 88 100-194 58-152 (235)
100 TIGR01272 gluP glucose/galacto 37.4 2.5E+02 0.0053 24.6 8.4 33 100-132 136-170 (310)
101 TIGR00351 narI respiratory nit 36.8 1.7E+02 0.0038 25.5 7.3 89 102-192 43-142 (224)
102 cd02865 Heme_Cu_Oxidase_III_2 36.5 2.4E+02 0.0053 23.2 8.0 57 103-159 6-68 (184)
103 PF07332 DUF1469: Protein of u 35.9 1.4E+02 0.0031 22.6 6.0 30 84-113 10-39 (121)
104 PF01040 UbiA: UbiA prenyltran 35.9 1.6E+02 0.0034 24.4 6.6 35 152-187 106-140 (257)
105 TIGR03818 MotA1 flagellar moto 35.8 1.7E+02 0.0037 26.6 7.3 46 82-132 147-192 (282)
106 PTZ00127 cytochrome c oxidase 35.5 1.7E+02 0.0036 27.8 7.5 44 108-151 352-395 (403)
107 PF14358 DUF4405: Domain of un 35.0 49 0.0011 22.9 3.0 42 111-152 8-58 (64)
108 PRK15003 cytochrome d ubiquino 34.7 4.2E+02 0.009 25.3 11.1 73 100-172 117-205 (379)
109 PF04654 DUF599: Protein of un 34.5 1.6E+02 0.0034 25.5 6.6 31 101-131 54-84 (216)
110 TIGR02797 exbB tonB-system ene 34.4 1.1E+02 0.0023 26.2 5.6 53 108-160 125-178 (211)
111 PRK09877 2,3-diketo-L-gulonate 33.3 2.5E+02 0.0055 22.5 10.6 92 109-201 9-111 (157)
112 COG3374 Predicted membrane pro 33.2 2.9E+02 0.0062 24.5 7.9 95 103-203 97-194 (197)
113 PRK10414 biopolymer transport 32.8 2.5E+02 0.0054 25.0 7.8 52 107-158 135-187 (244)
114 PF13706 PepSY_TM_3: PepSY-ass 32.5 84 0.0018 20.0 3.5 29 100-128 3-31 (37)
115 KOG1619 Cytochrome b [Energy p 32.4 3.9E+02 0.0085 24.3 11.0 84 100-184 121-216 (245)
116 PF02665 Nitrate_red_gam: Nitr 32.3 3.3E+02 0.0072 23.5 12.0 40 149-190 100-139 (222)
117 COG2181 NarI Nitrate reductase 32.0 2E+02 0.0043 25.9 6.9 72 112-184 128-200 (228)
118 PF08566 Pam17: Mitochondrial 31.9 2.4E+02 0.0051 24.4 7.1 35 136-172 74-108 (173)
119 PF06305 DUF1049: Protein of u 31.7 33 0.00071 23.6 1.6 14 31-44 26-39 (68)
120 cd00290 cytochrome_b_C Cytochr 31.5 68 0.0015 26.0 3.7 54 141-194 82-137 (147)
121 PF04999 FtsL: Cell division p 31.3 1.1E+02 0.0024 22.6 4.6 16 82-97 47-62 (97)
122 PRK10171 hydrogenase 1 b-type 31.1 3.5E+02 0.0075 23.4 12.0 24 166-189 179-202 (235)
123 cd02863 Ubiquinol_oxidase_III 31.1 3.1E+02 0.0067 22.9 7.7 52 105-156 8-66 (186)
124 PLN00012 chlorophyll synthetas 30.4 1.1E+02 0.0024 28.8 5.4 10 99-108 163-172 (375)
125 PRK00293 dipZ thiol:disulfide 29.6 3E+02 0.0066 27.1 8.4 56 129-184 319-377 (571)
126 COG1612 CtaA Uncharacterized p 29.3 2.3E+02 0.0051 26.3 7.2 70 18-141 226-297 (323)
127 PRK15006 thiosulfate reductase 29.0 4.1E+02 0.009 23.6 11.8 27 164-190 216-242 (261)
128 PRK02943 SecA regulator SecM; 28.7 34 0.00073 29.4 1.5 31 122-152 1-31 (167)
129 PF02028 BCCT: BCCT family tra 27.7 4.2E+02 0.0092 25.9 8.9 80 108-187 175-265 (485)
130 PF04123 DUF373: Domain of unk 27.5 5.3E+02 0.011 24.3 10.7 33 155-187 282-314 (344)
131 PF01102 Glycophorin_A: Glycop 27.4 49 0.0011 26.8 2.2 25 23-47 68-92 (122)
132 TIGR03592 yidC_oxa1_cterm memb 27.1 3.6E+02 0.0079 22.3 9.0 19 174-192 145-163 (181)
133 PF10999 DUF2839: Protein of u 27.0 1.2E+02 0.0027 22.3 4.1 28 101-128 39-67 (68)
134 TIGR03145 cyt_nit_nrfE cytochr 27.0 4.5E+02 0.0098 26.8 9.2 76 123-198 286-379 (628)
135 COG5395 Predicted membrane pro 26.8 1.8E+02 0.0039 24.0 5.3 53 103-155 38-90 (131)
136 PRK00888 ftsB cell division pr 26.7 54 0.0012 25.5 2.2 33 31-63 10-43 (105)
137 PRK01622 OxaA-like protein pre 26.6 4.5E+02 0.0098 23.3 11.1 17 176-192 215-231 (256)
138 TIGR02897 QoxC cytochrome aa3 26.6 3.8E+02 0.0083 22.5 7.5 87 107-194 11-105 (190)
139 TIGR00949 2A76 The Resistance 26.4 3.4E+02 0.0074 21.7 8.0 26 24-49 49-75 (185)
140 PF07820 TraC: TraC-like prote 26.3 53 0.0012 25.7 2.1 33 78-114 3-35 (92)
141 TIGR02230 ATPase_gene1 F0F1-AT 26.3 3.2E+02 0.007 21.4 9.7 41 121-161 57-97 (100)
142 PF02665 Nitrate_red_gam: Nitr 26.2 4.3E+02 0.0093 22.8 9.8 69 111-183 126-196 (222)
143 PF05620 DUF788: Protein of un 26.0 1.5E+02 0.0033 24.6 4.9 24 25-48 113-136 (170)
144 PF05106 Phage_holin_3: Phage 25.8 2.9E+02 0.0063 21.2 6.1 40 148-187 25-64 (100)
145 KOG3912 Predicted integral mem 25.6 4.2E+02 0.0091 25.3 8.1 22 180-201 180-203 (372)
146 COG4329 Predicted membrane pro 25.3 42 0.00091 28.4 1.5 29 100-128 88-116 (160)
147 PF09527 ATPase_gene1: Putativ 25.0 86 0.0019 21.0 2.8 30 99-128 21-51 (55)
148 PF09990 DUF2231: Predicted me 24.9 3E+02 0.0064 20.5 6.2 16 169-184 41-56 (104)
149 PF06365 CD34_antigen: CD34/Po 24.8 61 0.0013 28.4 2.5 34 23-56 102-137 (202)
150 PF10883 DUF2681: Protein of u 24.7 1.9E+02 0.0041 22.3 4.8 20 31-50 10-29 (87)
151 PF06181 DUF989: Protein of un 24.6 2.8E+02 0.006 26.0 6.7 53 99-162 221-273 (300)
152 PF12911 OppC_N: N-terminal TM 24.6 1.1E+02 0.0025 20.1 3.3 31 97-127 9-39 (56)
153 PF11158 DUF2938: Protein of u 24.3 1.7E+02 0.0037 24.3 4.9 32 86-119 49-80 (150)
154 PF05915 DUF872: Eukaryotic pr 24.3 1.4E+02 0.0031 23.7 4.3 44 105-151 43-86 (115)
155 COG3090 DctM TRAP-type C4-dica 24.2 4.2E+02 0.0091 22.0 10.5 94 106-200 17-121 (177)
156 PF04977 DivIC: Septum formati 24.1 43 0.00094 23.3 1.2 23 42-64 12-34 (80)
157 MTH00191 CYTB cytochrome b; Pr 23.7 3.4E+02 0.0074 25.4 7.3 83 106-191 28-129 (365)
158 PF05425 CopD: Copper resistan 23.6 3.1E+02 0.0068 20.4 8.6 31 109-139 8-40 (105)
159 PF13748 ABC_membrane_3: ABC t 23.6 5.5E+02 0.012 23.2 9.7 130 14-175 39-170 (237)
160 PRK10179 formate dehydrogenase 23.5 4.7E+02 0.01 22.4 9.3 24 166-189 150-173 (217)
161 COG1280 RhtB Putative threonin 23.2 4.6E+02 0.0099 22.1 11.0 20 31-50 75-94 (208)
162 COG0811 TolQ Biopolymer transp 22.8 4.6E+02 0.01 22.5 7.5 27 106-132 123-149 (216)
163 PLN02776 prenyltransferase 22.7 3E+02 0.0065 25.8 6.7 60 127-196 115-175 (341)
164 PF10112 Halogen_Hydrol: 5-bro 22.3 2.4E+02 0.0053 23.5 5.5 27 23-49 29-56 (199)
165 COG5416 Uncharacterized integr 22.2 2.1E+02 0.0047 22.7 4.8 38 134-172 53-96 (98)
166 PF04678 DUF607: Protein of un 21.7 3.3E+02 0.0071 22.8 6.2 69 81-150 68-137 (180)
167 PF10883 DUF2681: Protein of u 21.6 77 0.0017 24.4 2.2 31 31-61 7-37 (87)
168 PF11377 DUF3180: Protein of u 21.6 2.6E+02 0.0056 22.7 5.4 50 113-162 2-53 (138)
169 PF01810 LysE: LysE type trans 21.4 4.3E+02 0.0094 21.1 10.2 26 25-50 55-81 (191)
170 PF01595 DUF21: Domain of unkn 21.2 4.2E+02 0.009 20.9 9.5 36 94-129 42-77 (183)
171 TIGR02230 ATPase_gene1 F0F1-AT 21.1 84 0.0018 24.7 2.3 43 108-150 48-91 (100)
172 MTH00119 CYTB cytochrome b; Pr 21.1 4.4E+02 0.0096 24.8 7.5 83 106-191 32-133 (380)
173 cd00386 Heme_Cu_Oxidase_III_li 21.0 4.6E+02 0.0099 21.3 8.5 29 103-131 6-34 (183)
174 PF03904 DUF334: Domain of unk 20.9 6.3E+02 0.014 22.8 8.8 50 107-160 153-212 (230)
175 PLN02351 cytochromes b561 fami 20.7 6.4E+02 0.014 22.8 8.8 91 100-190 115-217 (242)
176 COG5505 Predicted integral mem 20.7 3.3E+02 0.0071 26.2 6.4 92 4-123 140-232 (384)
177 PF12412 DUF3667: Protein of u 20.6 79 0.0017 21.2 1.9 17 14-30 21-37 (46)
No 1
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=100.00 E-value=2e-46 Score=313.52 Aligned_cols=172 Identities=45% Similarity=0.657 Sum_probs=155.0
Q ss_pred hhhhhhHHHHHH-HHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhh
Q 028805 21 VALVHPIVMGSL-LVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKG 99 (203)
Q Consensus 21 ~~~~HP~~M~~L-~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~kg 99 (203)
++++||++|+.+ |++++|+.|+|||+|++|+.++.-+.++..++.+ +.++. +.+..+.+..+.+++++||||+++
T Consensus 2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~ 77 (175)
T PF13301_consen 2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVA-VLIAL---AYSIARAIFLILALTGTRKELVKL 77 (175)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhcccccc-chhcc---cchhhHHHHHHHHHHHHHHHHHhh
Confidence 478999999955 9999999999999999999988555555555543 22232 233448999999999999999999
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCC-hhHHHHHHHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGS-ETARNLHIALNALN 178 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~-~~aR~lHi~LN~ll 178 (203)
++|++|+++|++++++++++++||+.+||.++|++|+|||+|+|+++++||++|++++|+|+++| +++|++|+++|+++
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~ 157 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLA 157 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975 59999999999999
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 028805 179 ILLFIWQIPTGIDIVFKV 196 (203)
Q Consensus 179 llLFl~QaiTG~~IVqk~ 196 (203)
++||+||++||++++|||
T Consensus 158 l~Lf~~q~itG~~ill~i 175 (175)
T PF13301_consen 158 LLLFAWQAITGWRILLKI 175 (175)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999996
No 2
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=98.58 E-value=2.3e-06 Score=66.65 Aligned_cols=91 Identities=22% Similarity=0.069 Sum_probs=73.7
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-------CChhHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHI 172 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-------g~~~aR~lHi 172 (203)
.....|..+-.+.+.+.++|.+....+.-.+..+-|.+.|-+.|++..+++.++...+-.... .|+..+..|.
T Consensus 33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~ 112 (137)
T PF03188_consen 33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHR 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHH
Confidence 345789988888888888887777766655555778999999999999999998875544421 3666777899
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 028805 173 ALNALNILLFIWQIPTGI 190 (203)
Q Consensus 173 ~LN~llllLFl~QaiTG~ 190 (203)
.+..++.++...++.+|.
T Consensus 113 ~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 113 WLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999997
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=98.46 E-value=6.6e-06 Score=64.37 Aligned_cols=90 Identities=18% Similarity=0.011 Sum_probs=74.8
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-------CChhHHHHHHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHIA 173 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-------g~~~aR~lHi~ 173 (203)
-..-|..+..+-+.+++.|.+.+..+.-.+..+-|.+.|-+.|++...|++++...+-.... .|..++..|..
T Consensus 33 ~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 112 (129)
T smart00665 33 WFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRF 112 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 45889999999888888888888877665555678999999999999999998877655422 26677789999
Q ss_pred HHHHHHHHHHHHhhhhH
Q 028805 174 LNALNILLFIWQIPTGI 190 (203)
Q Consensus 174 LN~llllLFl~QaiTG~ 190 (203)
+..+++.|-..++.+|.
T Consensus 113 ~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 113 VGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 99999999999999883
No 4
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.37 E-value=9.9e-06 Score=67.08 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=76.5
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh------h---cCChhHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM------Q---KGSETARNL 170 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i------~---kg~~~aR~l 170 (203)
.-...|..+-++.+.+.+.|......+-..+..+-|.+.|-+.|++.+.|++++...+-.. . ++|...+..
T Consensus 56 ~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~ 135 (183)
T cd08761 56 TKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKY 135 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHH
Confidence 3457899999988888888877777666555667789999999999999999998885532 1 346778889
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH
Q 028805 171 HIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 171 Hi~LN~llllLFl~QaiTG~~I 192 (203)
|..+..+++++-..++.+|.+-
T Consensus 136 H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 136 HRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999854
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=98.21 E-value=4.4e-05 Score=59.63 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=73.9
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hc-----CChhHHHHHHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QK-----GSETARNLHIA 173 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~k-----g~~~aR~lHi~ 173 (203)
-+.-|.-+..+-+.+.+.|.+.+..+.-.+..+-|.+.|-+.|++.+.|+.++..++-.. .+ .|+..+..|..
T Consensus 35 ~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 114 (131)
T cd08554 35 LKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRF 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 447899999988888888888888777656666789999999999999999998886333 11 15678889999
Q ss_pred HHHHHHHHHHHHhhhh
Q 028805 174 LNALNILLFIWQIPTG 189 (203)
Q Consensus 174 LN~llllLFl~QaiTG 189 (203)
+..+++.+-...+.+|
T Consensus 115 ~G~~~~~la~~t~~~G 130 (131)
T cd08554 115 FGLAIFVLAIATILLG 130 (131)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999887
No 6
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.91 E-value=0.00041 Score=57.50 Aligned_cols=131 Identities=16% Similarity=0.056 Sum_probs=95.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 028805 17 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL 96 (203)
Q Consensus 17 ~g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l 96 (203)
+.++....|+++|...|....=.+.+-.+.++. .+
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~------------------------------------------- 65 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GD------------------------------------------- 65 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-------------------------------------------
Confidence 356778899999997777766655554433311 00
Q ss_pred hhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc----CChhHHHHHH
Q 028805 97 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK----GSETARNLHI 172 (203)
Q Consensus 97 ~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k----g~~~aR~lHi 172 (203)
+.++ .-|..+=.+-+.+.+.+.+.|..+. ....+-+.+.|.+.|+++++|++++...+-.... .|+.++..|.
T Consensus 66 -~~~~-~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~ 142 (191)
T cd08760 66 -PVWF-YLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR 142 (191)
T ss_pred -chhH-HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence 0133 4798888777777777777777765 2344456899999999999999987766654322 3566788999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 028805 173 ALNALNILLFIWQIPTGIDIVFK 195 (203)
Q Consensus 173 ~LN~llllLFl~QaiTG~~IVqk 195 (203)
.+..++.+|-..|+.+|....+.
T Consensus 143 ~~G~~~~~l~~v~i~~G~~~~~~ 165 (191)
T cd08760 143 WLGRAALILAIVNIFLGLDLAGA 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988764
No 7
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.87 E-value=0.00053 Score=56.22 Aligned_cols=90 Identities=14% Similarity=-0.007 Sum_probs=67.4
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hcC-----ChhHHHHHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIAL 174 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~kg-----~~~aR~lHi~L 174 (203)
+.-|.-+..+.+.+++.|...=..+--.+..+-|+|.|-|.|++.+.|...++..+-.+ .++ |...+..|...
T Consensus 41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~ 120 (143)
T cd08763 41 KILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFF 120 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHH
Confidence 45888888777766666554333333334445779999999999999999988887433 332 46667799999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 028805 175 NALNILLFIWQIPTGID 191 (203)
Q Consensus 175 N~llllLFl~QaiTG~~ 191 (203)
+.+++++-...+.+|..
T Consensus 121 G~~~f~la~~t~~lG~~ 137 (143)
T cd08763 121 GRALFLSSVGTSLLGLT 137 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999973
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.84 E-value=0.00078 Score=55.33 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=62.6
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhh----cCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYL----RAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNL 170 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~----~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~l 170 (203)
+.-|.-+=.+.+.+.+. |++..+. +..+-|+|.|-|.|++.+.|..++...+- ...++ |...+..
T Consensus 41 k~iH~~l~~la~~~~vv----Gl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~ 116 (144)
T cd08766 41 KAVHLTLHLVALVLGIV----GIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPW 116 (144)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 35676655555544444 4444444 33445799999999999999998887773 33443 5666779
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 028805 171 HIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 171 Hi~LN~llllLFl~QaiTG~ 190 (203)
|...+.+++++-...+.+|.
T Consensus 117 H~~~G~~~~~la~~t~~lGl 136 (144)
T cd08766 117 HVFLGLAIYYLAIATAETGL 136 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997
No 9
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.72 E-value=0.0013 Score=57.37 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=66.0
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhc--CCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-ChhHH----HHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLR--AGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-SETAR----NLH 171 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~--~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-~~~aR----~lH 171 (203)
.+.-|.-+..+.+.+.+.|...-.-+.-.+ .-+-|+|.|-|.|++.+.|..++...+- ...++ +...| ..|
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H 136 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLH 136 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHH
Confidence 456899888888777777644322222222 3346799999999999999998887774 23432 33333 699
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 028805 172 IALNALNILLFIWQIPTGI 190 (203)
Q Consensus 172 i~LN~llllLFl~QaiTG~ 190 (203)
...+.+++++-...+.+|.
T Consensus 137 ~~~Gl~~fvLaiaT~~lGl 155 (214)
T cd08764 137 VFFGLFIFVLAVATALLGI 155 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997
No 10
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=97.70 E-value=0.0013 Score=54.82 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=61.3
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhh----cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhh--c-----CChhHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYL----RAGKLFPGPHLFAGAAITVLWALAAALVPAMQ--K-----GSETARNL 170 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~----~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~--k-----g~~~aR~l 170 (203)
+.-|.-+=.+.+.+. +.|.+..+. +..+-|+|.|-|.|++.+.|..+++..+-... + .|...+..
T Consensus 48 k~iH~~L~~~a~~~~----i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~ 123 (153)
T cd08765 48 KLIHAGLHILAFILA----IISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPL 123 (153)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 356765444444443 444444433 34557799999999999999999888774333 2 25566679
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 028805 171 HIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 171 Hi~LN~llllLFl~QaiTG~ 190 (203)
|+..+.++++|-..-+.+|+
T Consensus 124 H~~~G~~i~~Lai~t~~lG~ 143 (153)
T cd08765 124 HVYSGLFIFGTVIATALMGI 143 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996
No 11
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=97.45 E-value=0.0024 Score=57.07 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=74.1
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL 174 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lHi~L 174 (203)
|--|--+=++.+.+++.+...=+-+.-..+-+.|+|-|-|.|+..+.|-.++...+- ...++ |....+.|+.+
T Consensus 89 KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~ 168 (245)
T KOG1619|consen 89 KLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFL 168 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHH
Confidence 356877777777777777665555555555567899999999999999888776542 22332 66677799999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhc
Q 028805 175 NALNILLFIWQIPTGIDIVFKVLEFT 200 (203)
Q Consensus 175 N~llllLFl~QaiTG~~IVqk~l~~~ 200 (203)
++.++.+...|+.||.---.++.+++
T Consensus 169 Gl~~f~lai~ta~~Gl~ek~~f~~~~ 194 (245)
T KOG1619|consen 169 GLAIFILAIVTALTGLLEKLTFLCFG 194 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999995555566655
No 12
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.34 E-value=0.0066 Score=51.91 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=59.4
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhc----CCCCCcchhHHHHHHHHHHHHHHHHhhHh--hhcC-----ChhHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLR----AGKLFPGPHLFAGAAITVLWALAAALVPA--MQKG-----SETARNLH 171 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~----~G~Lf~gpHl~aGL~~v~L~l~Saal~p~--i~kg-----~~~aR~lH 171 (203)
.-|.-+=.+.+.+.+. |+...+-+ .-+-++|-|-|.|++.+.|..++...+-. ..++ |...+..|
T Consensus 72 ~~H~~L~~~Al~~~vv----Gl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H 147 (179)
T cd08762 72 LLHAGLLLLAFILTVI----GLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIH 147 (179)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHH
Confidence 6676655555544444 44444432 33356899999999999999987765542 2222 44555699
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 028805 172 IALNALNILLFIWQIPTGI 190 (203)
Q Consensus 172 i~LN~llllLFl~QaiTG~ 190 (203)
+..+..+.+|....+.||+
T Consensus 148 ~~~G~~if~Laiat~~lGl 166 (179)
T cd08762 148 VFFGAMILVLSIASCISGI 166 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996
No 13
>PLN02680 carbon-monoxide oxygenase
Probab=97.13 E-value=0.012 Score=52.22 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=62.7
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh--hcC-----ChhHHHHHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIALN 175 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--~kg-----~~~aR~lHi~LN 175 (203)
.-|.-+=.+.+.+.+.|...=.-+--.+..+-|+|.|-|.|++.+.|..++...+-.. .++ |......|...+
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 5687666666665555553311111112344679999999999999999888776432 332 344456999999
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 028805 176 ALNILLFIWQIPTGIDIVFK 195 (203)
Q Consensus 176 ~llllLFl~QaiTG~~IVqk 195 (203)
.++++|....+.+|. .+|
T Consensus 161 ~~if~LaiaT~~lG~--~Ek 178 (232)
T PLN02680 161 IYIYALAVATATTGI--LEK 178 (232)
T ss_pred HHHHHHHHHHHHHHH--HHH
Confidence 999999999999997 455
No 14
>PLN02810 carbon-monoxide oxygenase
Probab=97.05 E-value=0.026 Score=50.16 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=59.5
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL 174 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lHi~L 174 (203)
|.-|.-+=.+.+.+.+.|...=.-+--.+.-+-++|.|-|.|+..+.|..++...+- ...++ |......|+..
T Consensus 80 K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~ 159 (231)
T PLN02810 80 KLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLF 159 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHH
Confidence 356765554444444443332121111222345689999999999999998877665 33443 33444599999
Q ss_pred HHHHHHHHHHHhhhhH
Q 028805 175 NALNILLFIWQIPTGI 190 (203)
Q Consensus 175 N~llllLFl~QaiTG~ 190 (203)
+..+..|....+.+|.
T Consensus 160 Gl~if~LAiata~lGi 175 (231)
T PLN02810 160 GLFVYILAVGNAALGF 175 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999997
No 15
>PLN02351 cytochromes b561 family protein
Probab=96.66 E-value=0.052 Score=48.53 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=60.0
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC---CCCcchhHHHHHHHHHHHHHHHHhhH--hhhcC-----ChhHHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAG---KLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLH 171 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G---~Lf~gpHl~aGL~~v~L~l~Saal~p--~i~kg-----~~~aR~lH 171 (203)
+.-|.-+=.+.+.+.+.| +..-+-+.+ +-+++-|-|.|++.+.|..++...+- ...++ |...+..|
T Consensus 84 K~lH~~Lh~~Ali~~vvG----l~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~H 159 (242)
T PLN02351 84 KSVHLWLQGLALASGVFG----IWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWH 159 (242)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHH
Confidence 466766555555554444 444443433 34799999999999999988766553 23332 44556699
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 028805 172 IALNALNILLFIWQIPTGI 190 (203)
Q Consensus 172 i~LN~llllLFl~QaiTG~ 190 (203)
+..+..+.+|-..-+.||.
T Consensus 160 v~~Gl~if~LaiaTa~lGl 178 (242)
T PLN02351 160 VFLGLYTYGLAVATAETGL 178 (242)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996
No 16
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=93.35 E-value=0.75 Score=35.61 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=48.0
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhhH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVP 158 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~p 158 (203)
.+++-|-.+|.+.+.+.++-.+.|...-+....+ .+.-.|-+.|..+..|..++..++-
T Consensus 67 h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 67 HFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999988753322 3434499999999999888877765
No 17
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=92.77 E-value=1.1 Score=35.67 Aligned_cols=90 Identities=16% Similarity=0.018 Sum_probs=56.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCC--cchhHHHHHHHHHHHHHHHHhh--------------------
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALV-------------------- 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf--~gpHl~aGL~~v~L~l~Saal~-------------------- 157 (203)
..|-.|.-.-..++.+.+.|...-........+... ...|.++|+++.+++++-....
T Consensus 5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 5 FTRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 466778776666666666555443333333333343 5789999999999987766555
Q ss_pred -------HhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805 158 -------PAMQKGSETARNLHIALNALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 158 -------p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~~IV 193 (203)
|.-.+.++..|. ...++.++.+.+++||+-..
T Consensus 85 ~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKI----VHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred HHhcCCCCCCCcCChHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 111222444444 55667888889999998553
No 18
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=92.52 E-value=2 Score=34.00 Aligned_cols=90 Identities=21% Similarity=0.156 Sum_probs=53.7
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhh------------------hhhcC----CCCCcchhHHHHHHHHHHHHHHHHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVN------------------TYLRA----GKLFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~------------------T~~~~----G~Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
..+.-|...|.++++++++-.+-+... ...+. .+-+....-.+-.++..++++...++
T Consensus 45 ~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG 124 (188)
T PF00033_consen 45 LLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITG 124 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998888877777666 11110 01112222222222333333333344
Q ss_pred Hhh--------------h-cCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 158 PAM--------------Q-KGSETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 158 p~i--------------~-kg~~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
-.| + ....++|.+|.....+++.+++.+++-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a 171 (188)
T PF00033_consen 125 LIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAA 171 (188)
T ss_dssp HHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 1 1378899999999999999988887643
No 19
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.41 E-value=1 Score=37.30 Aligned_cols=87 Identities=16% Similarity=0.045 Sum_probs=64.8
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhh--cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhh-cCChhHHHHHHHHHHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYL--RAGKLFPGPHLFAGAAITVLWALAAALVPAMQ-KGSETARNLHIALNAL 177 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~--~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~-kg~~~aR~lHi~LN~l 177 (203)
...-| |.+|..-+.+..-.|++.... ..++.+.-.|...=+..+++.+++..+.-... .+++..+..|-.+.++
T Consensus 35 ~~~~H---g~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~ 111 (191)
T cd08760 35 LIKAH---GVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGII 111 (191)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCcchhhhHH
Confidence 34566 777777676666667766543 34456677898888777777777666655542 4577789999999999
Q ss_pred HHHHHHHHhhhhH
Q 028805 178 NILLFIWQIPTGI 190 (203)
Q Consensus 178 lllLFl~QaiTG~ 190 (203)
+++++..|.+.|.
T Consensus 112 ~~~l~~lQ~~~G~ 124 (191)
T cd08760 112 VLALAILQPLLGL 124 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999997
No 20
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=91.25 E-value=1.5 Score=34.18 Aligned_cols=83 Identities=12% Similarity=-0.088 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhh--c--CCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcC--ChhHHHHHHHHHHHHHHHH
Q 028805 109 GSILLGFGVLESVGGGVNTYL--R--AGKLFPGPHLFAGAAITVLWALAAALVPAMQKG--SETARNLHIALNALNILLF 182 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~--~--~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg--~~~aR~lHi~LN~llllLF 182 (203)
|.+|..-+++..-.|+..... + ..+.+..-|.........+.+++..+.-..... ++-..+.|..+.++.++|+
T Consensus 3 ~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~ 82 (129)
T smart00665 3 PVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLA 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHH
Confidence 344555555555566666653 2 123445789888888777777777766655332 2457789999999999999
Q ss_pred HHHhhhhHH
Q 028805 183 IWQIPTGID 191 (203)
Q Consensus 183 l~QaiTG~~ 191 (203)
..|.+.|.-
T Consensus 83 ~~Q~~~G~~ 91 (129)
T smart00665 83 GLQWLSGFL 91 (129)
T ss_pred HHHHHHHHH
Confidence 999999975
No 21
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=90.75 E-value=3.2 Score=34.36 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=50.0
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhh-------cCCCCCcchhHHHHHHHHHHHHHHHHhhHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYL-------RAGKLFPGPHLFAGAAITVLWALAAALVPAM 160 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~-------~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i 160 (203)
.+.+-|-.+|.+.+.+.++-.+.|...-+. +..+.+...|-+.|..+..|..++..++-+-
T Consensus 90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 90 HFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 578899999999999999999999875542 2334567889999999999998888877644
No 22
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=90.29 E-value=2.9 Score=32.47 Aligned_cols=57 Identities=25% Similarity=0.073 Sum_probs=46.0
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC-----CCCcchhHHHHHHHHHHHHHHHHh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAAL 156 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G-----~Lf~gpHl~aGL~~v~L~l~Saal 156 (203)
.+...|-.+|.+.+.+.++-.+.|...-+.... +.+...|-+.|.....+...+..+
T Consensus 68 h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~ 129 (131)
T cd08554 68 NLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILL 129 (131)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999887544443 355789999999998887776544
No 23
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=89.32 E-value=0.77 Score=28.79 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805 164 SETARNLHIALNALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG~~IV 193 (203)
+.++|.+|..+.....+..+..++||.-++
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999998543
No 24
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=85.09 E-value=14 Score=32.65 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.6
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL 134 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L 134 (203)
-|.||..+|+.+++..++.+++|.+..+...+..
T Consensus 11 er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~ 44 (301)
T PF14362_consen 11 ERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGP 44 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4578999999999999999888888877765443
No 25
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=85.08 E-value=6.9 Score=30.93 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=53.2
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhh----hhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhh---------------
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGG----GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--------------- 160 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG----~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i--------------- 160 (203)
..|--|.-....++.+.+.|.... ..............-|.+.|+++.+++++=....-.=
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 467889877776666666655543 1112222223346899999999887776533222111
Q ss_pred ---------hcCChhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028805 161 ---------QKGSETARNLHIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 161 ---------~kg~~~aR~lHi~LN~llllLFl~QaiTG~~I 192 (203)
.+...+.....-....++.++.+.+++||+-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122333344445556677788899999866
No 26
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=83.88 E-value=5.8 Score=32.60 Aligned_cols=58 Identities=16% Similarity=0.034 Sum_probs=45.6
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcC-----CCCCcchhHHHHHHHHHHHHHHHHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA-----GKLFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~-----G~Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
.+...|-.+|.+.+.+..+-.+.|+..=+... .+.....|-+.|+.+-.|.+.++.++
T Consensus 73 hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG 135 (143)
T cd08763 73 DMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLG 135 (143)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999975533222 23446789999999999888777665
No 27
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=82.05 E-value=19 Score=31.82 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcC-CCCCcchhHHHHHHHHHHHHHHHHhhHhhh--cCChhHHHHHHHHHHHHHHHHHHH
Q 028805 109 GSILLGFGVLESVGGGVNTYLRA-GKLFPGPHLFAGAAITVLWALAAALVPAMQ--KGSETARNLHIALNALNILLFIWQ 185 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~~~-G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~--kg~~~aR~lHi~LN~llllLFl~Q 185 (203)
..+.+.++++-.+.|........ .+.....|+..++++.+++...+.....-. .++...+.--..+-...+++...|
T Consensus 103 ~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~q 182 (302)
T PF02628_consen 103 ALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRPEESPRRLPRPRRLRWLAWAALVLVFIQ 182 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHH
Confidence 34445555554444555555553 566689999999999988887666555441 111112222223345566678888
Q ss_pred hhhhHHH
Q 028805 186 IPTGIDI 192 (203)
Q Consensus 186 aiTG~~I 192 (203)
.+.|..+
T Consensus 183 i~lGa~v 189 (302)
T PF02628_consen 183 IALGALV 189 (302)
T ss_pred Hhcccee
Confidence 8888643
No 28
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=81.91 E-value=17 Score=32.65 Aligned_cols=130 Identities=8% Similarity=0.082 Sum_probs=68.5
Q ss_pred cccch----hhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCC----------------CC---
Q 028805 16 LEGRS----VALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTP----------------DG--- 72 (203)
Q Consensus 16 ~~g~~----~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~----------------~g--- 72 (203)
+||-+ .+|+||-.+...+..++-|....+.++... +-.+.+|+.+.+...++ +|
T Consensus 16 l~Gg~~~~l~~~~~~~~~lIV~GGt~ga~li~~p~~~i~---~~~k~~~~~f~~~~~~~~~~i~~l~~la~~aRr~GlLa 92 (254)
T PRK06743 16 LGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIK---KYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLS 92 (254)
T ss_pred HcCCChhHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 45655 677999999999999888888777766443 23344555554332222 22
Q ss_pred -C-CCCCCCCh-------------hHHHHH-hhHHHHHHHhhhhhh--HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 028805 73 -A-PAETAPSP-------------VEIKIQ-QLTEERKELLKGSYR--DRHYNAGSILLGFGVLESVGGGVNTYLRAGKL 134 (203)
Q Consensus 73 -~-~~~~~~~~-------------~~~~~~-~~~~~rK~l~kg~~r--~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L 134 (203)
| ..+.++.| ...+++ .++++.+......-+ .-=..+|.+.=.++++|++.|++.+..+-++
T Consensus 93 LE~~~~~~~d~fl~~gl~l~vdg~~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP~lGllGTVlGLI~~~~~l~~- 171 (254)
T PRK06743 93 LEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQD- 171 (254)
T ss_pred HHhhccCCccHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccCC-
Confidence 0 01111111 111221 222222211111101 1112567777789999999999999987763
Q ss_pred CcchhHHHHHHHHHHHHH
Q 028805 135 FPGPHLFAGAAITVLWAL 152 (203)
Q Consensus 135 f~gpHl~aGL~~v~L~l~ 152 (203)
|-..++-.-++|+..
T Consensus 172 ---p~~lg~gIa~ALvtT 186 (254)
T PRK06743 172 ---TSQIGTGMAVAMLTT 186 (254)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 334444444444433
No 29
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=80.52 E-value=4.7 Score=25.86 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805 164 SETARNLHIALNALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG~~IV 193 (203)
+++++.+|..+.+++-++++..++||.-.+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~ 30 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV 30 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 467899999999999999999999996544
No 30
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=79.66 E-value=14 Score=28.16 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=31.2
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF 135 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf 135 (203)
|....|..+|-+-+..++..++.|+..+....+..+
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~~~~g~~ 39 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALSALFIAFYAPGGLW 39 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 567899999999999999999999999888665544
No 31
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=79.36 E-value=24 Score=26.50 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhhhcC-ChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028805 137 GPHLFAGAAITVLWALAAALVPAMQKG-SETARNLHIALNALNILLFIWQIPTGIDIVFKV 196 (203)
Q Consensus 137 gpHl~aGL~~v~L~l~Saal~p~i~kg-~~~aR~lHi~LN~llllLFl~QaiTG~~IVqk~ 196 (203)
..|...|+..+.+.++-++..-.+..+ .+..+..=..+.++.+.+...|++-|-+.|-+|
T Consensus 41 ~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy~~ 101 (104)
T PF09990_consen 41 WLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVYRY 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 578899998888888833333333222 234667788899999999999999999988764
No 32
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=79.20 E-value=19 Score=31.07 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCC--cchhHHHHHHHHHHHHHHHHhhH
Q 028805 109 GSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALVP 158 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~~~G~Lf--~gpHl~aGL~~v~L~l~Saal~p 158 (203)
+++-=.++++|+|.||+.++..-+.-. ..+-..+|=.-.+|+..++.+.-
T Consensus 129 ~~~aPllGLLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitTa~GL~v 180 (215)
T TIGR02796 129 GSTSPFIGLFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATAIGLFA 180 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444447999999999999998876532 34455555555555555554443
No 33
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=78.08 E-value=15 Score=30.26 Aligned_cols=58 Identities=21% Similarity=0.068 Sum_probs=45.0
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC-----CCCcchhHHHHHHHHHHHHHHHHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G-----~Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
.+..-|-.+|.+.+.+..+-.+.|...=+.... +-...-|-+.|+.+-+|.+.++.++
T Consensus 73 ~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lG 135 (144)
T cd08766 73 NLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETG 135 (144)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999876444332 2335689999999988877766654
No 34
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=71.85 E-value=19 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=47.2
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC--CCcchhHHHHHHHHHHHHHHHHhhHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK--LFPGPHLFAGAAITVLWALAAALVPAM 160 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~--Lf~gpHl~aGL~~v~L~l~Saal~p~i 160 (203)
-|..-|+..|..+++++++.+. ..+.+..|+ ....-|.+.+..+..|.+....++.++
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~a---l~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAA---LVPQIQKGNRPWARRLHIYLNSLALLLFAWQAITGWRI 171 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHH---HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667799999999999887655 556666653 457999999999999999999988776
No 35
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=71.54 E-value=59 Score=28.57 Aligned_cols=91 Identities=21% Similarity=0.074 Sum_probs=60.3
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC-----CCCcchhHHHHHHHHHHHHHHHHhhHhh-----hcCChhHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAALVPAM-----QKGSETARN 169 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G-----~Lf~gpHl~aGL~~v~L~l~Saal~p~i-----~kg~~~aR~ 169 (203)
.+...|-.+|.+.+.+..+-.+.|.+.-+.... +.....|-+.|+.+-.|.+.++.++-.= ++.-.....
T Consensus 92 hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~ 171 (214)
T cd08764 92 NMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPA 171 (214)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 567889999999999999999999866444221 2233579999999999888877766421 111112223
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 028805 170 LHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 170 lHi~LN~llllLFl~QaiTG~ 190 (203)
-....|++-+++.+.-++-..
T Consensus 172 e~~l~N~~gl~~~~fg~~V~~ 192 (214)
T cd08764 172 EGVLGNFIGIVLVIFGGLVVY 192 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455678877776665444333
No 36
>PRK08456 flagellar motor protein MotA; Validated
Probab=71.27 E-value=27 Score=31.03 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGK 133 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~ 133 (203)
..+|.+.=+++++|++.|++.+..+-++
T Consensus 147 ~~~a~~AP~lGllGTVlGlI~~~~~l~d 174 (257)
T PRK08456 147 ITAGETCPTMGLVGAVMGLMLALQKLDN 174 (257)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 3788888999999999999999888764
No 37
>PLN02680 carbon-monoxide oxygenase
Probab=68.97 E-value=27 Score=31.18 Aligned_cols=87 Identities=21% Similarity=0.131 Sum_probs=59.9
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhhHhhhc--------CChh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVPAMQK--------GSET 166 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~p~i~k--------g~~~ 166 (203)
.+...|-.+|.+.+.+..+=.+.|...=+...++ .....|.+.|+.+-.|.+.++.++- .+| +-..
T Consensus 112 nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~-~Ek~~f~~~~~~~~~ 190 (232)
T PLN02680 112 NFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGI-LEKATFLQSNKVISR 190 (232)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCccCC
Confidence 5668899999999999999999998774444332 3346799999999998888776653 221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028805 167 ARNLHIALNALNILLFIWQIP 187 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~Qai 187 (203)
...=....|++-+++.+.-++
T Consensus 191 ~~~e~~lvN~~gl~~~~fg~~ 211 (232)
T PLN02680 191 YSTEAMLVNSLGILIVVLGGF 211 (232)
T ss_pred CCchhhhHhHHHHHHHHHHHH
Confidence 223456778877766655443
No 38
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=68.11 E-value=34 Score=29.41 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcC-------------------CCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRA-------------------GKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~-------------------G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
|+.|++++...+.-.+-|+..+.... |.+..+-|.++.=.+..++.+=..-+-.....+ .
T Consensus 23 ~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~-~ 101 (200)
T cd00284 23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK-K 101 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 78999999888888888887665433 334568899988887777666443333332211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~I 192 (203)
.|..-=..+++++++....++||--.
T Consensus 102 pre~~W~~G~~l~~l~~~~af~GY~L 127 (200)
T cd00284 102 PRELTWVIGVILLLLTMATAFMGYVL 127 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccc
Confidence 45555677888888889999998543
No 39
>PRK09109 motC flagellar motor protein; Reviewed
Probab=67.82 E-value=87 Score=27.65 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHH-------HhhHhhhcCChhHHHHHHHHHHHHH
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAA-------ALVPAMQKGSETARNLHIALNALNI 179 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Sa-------al~p~i~kg~~~aR~lHi~LN~lll 179 (203)
.+|.+.=+++++|++.|++.++.+-++ |-..++-.-.+|+...+ ...|.-.|=+.....-.....+++-
T Consensus 148 ~~a~~AP~lGllGTVlGlI~~f~~l~~----p~~lg~gIa~ALvtT~~Gl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~e 223 (246)
T PRK09109 148 SMGGYAPTIGIIGAVMGLIHVMENLAD----PSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVE 223 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777799999999999999988864 44444433333333222 2224444323333334444445554
Q ss_pred HHHHHHh
Q 028805 180 LLFIWQI 186 (203)
Q Consensus 180 lLFl~Qa 186 (203)
.+...|.
T Consensus 224 gil~i~~ 230 (246)
T PRK09109 224 GLVAIAE 230 (246)
T ss_pred HHHHHhC
Confidence 4444443
No 40
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=67.74 E-value=76 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 165 ETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 165 ~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
..+|.+|-....++++.++++++-.
T Consensus 147 ~~~~~~H~~~a~~~i~~iivHiy~a 171 (211)
T PRK10639 147 RFALMLHSFAAVALIVVIMVHIYAA 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999988765
No 41
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=67.46 E-value=1.1e+02 Score=28.51 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHH-HHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-CChhHH--HHHHHHHHHHHHHHHHHh
Q 028805 111 ILLGFG-VLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-GSETAR--NLHIALNALNILLFIWQI 186 (203)
Q Consensus 111 ill~l~-vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-g~~~aR--~lHi~LN~llllLFl~Qa 186 (203)
+++++. +=+++||-+++..-+ .-...+|+..++.+...+++-+...-+-++ +++..+ .-=-..-.+.+++...|.
T Consensus 115 ~~l~l~~lQgliG~~tV~~gl~-~~~~~~h~~la~~l~aa~~il~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~i 193 (323)
T COG1612 115 LALALLILQGLIGGWTVTSGLL-PRIVASHLRLAMHLFAALVILALLIWTADGPGSPRLADGKKLRGLAGIGLGLLYLQI 193 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhcccccCccchhccchhHHHHHHHHHHHHHHH
Confidence 344444 445555556655544 456789999998887776665544444433 111111 111123344556667788
Q ss_pred hhhHHH
Q 028805 187 PTGIDI 192 (203)
Q Consensus 187 iTG~~I 192 (203)
++|--+
T Consensus 194 ~~GalV 199 (323)
T COG1612 194 YLGALV 199 (323)
T ss_pred Hhhhhh
Confidence 888654
No 42
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=67.15 E-value=12 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=23.9
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~ 128 (203)
..|+-|...|.+...+.++.++-|.+..+
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999998888888888876544
No 43
>COG4648 Predicted membrane protein [Function unknown]
Probab=65.91 E-value=23 Score=30.94 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028805 148 VLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKV 196 (203)
Q Consensus 148 ~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~~IVqk~ 196 (203)
.-++.-.+..+.|.+.....+.-|+..|...++-|..-...|..||.|+
T Consensus 70 ag~alc~a~A~~~~~~e~~LylypV~vN~mml~vFG~tL~ag~t~verf 118 (201)
T COG4648 70 AGIALCLAVASFMLKTEQLLYLYPVVVNAMMLAVFGGTLWAGMTIVERF 118 (201)
T ss_pred HHHHHHHhhhHHHhhhhhhhhhhHHHHHHHHHHHHhhhHhhchHHHHHH
Confidence 3334445677888888888999999999999999999999999999886
No 44
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=64.90 E-value=33 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.7
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhh
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~ 128 (203)
..|-|...|...+.+.++.++-|++.+|
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~~~~ 87 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLFFSF 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5689999999999999999999987664
No 45
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=64.26 E-value=65 Score=28.75 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHH-------hhHhhhcCChhHHHHHHHHHHHHH
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAA-------LVPAMQKGSETARNLHIALNALNI 179 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saa-------l~p~i~kg~~~aR~lHi~LN~lll 179 (203)
.+|.+.=+++++|++.|++.+..+-++ |-..++-.-++|+...+. ..|.-.|=+.+.+.-...-.++.-
T Consensus 145 ~~a~~aP~lGllGTVlGlI~~~~~l~~----p~~lg~gIa~ALitT~yGl~~An~v~~P~a~kl~~~~~~e~~~~~~i~e 220 (254)
T PRK08990 145 AFGDVAPAMGMIGTLIGLVAMLSNMDD----PKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMD 220 (254)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777789999999999999998874 444444444444443333 335444323333333344444444
Q ss_pred HHHHHH
Q 028805 180 LLFIWQ 185 (203)
Q Consensus 180 lLFl~Q 185 (203)
.+...|
T Consensus 221 gi~ai~ 226 (254)
T PRK08990 221 AVLAIQ 226 (254)
T ss_pred HHHHHh
Confidence 444433
No 46
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=64.24 E-value=1.2e+02 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=23.0
Q ss_pred ccccchhhhhhhHHHH-HHHHHHHHHHHHhhhheeeeccc
Q 028805 15 ILEGRSVALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTIQ 53 (203)
Q Consensus 15 ~~~g~~~~~~HP~~M~-~L~a~~lyA~yLG~q~rr~rt~~ 53 (203)
-..|--..|++|..-. +++..+++ .++|--|-..||.+
T Consensus 147 ~~~g~~~~~l~pf~ll~Gl~~v~~~-~~~GA~~l~~kt~g 185 (328)
T PF02322_consen 147 NYTGGFFDLLSPFSLLGGLAVVALF-ALHGAVFLALKTEG 185 (328)
T ss_pred cccCchHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhccH
Confidence 3445567789998877 55555554 45565555555544
No 47
>CHL00070 petB cytochrome b6
Probab=63.69 E-value=30 Score=30.32 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhc-------------------CCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLR-------------------AGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~-------------------~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
++.|++++...+.-.+-|+..+... +|.+..+-|.++.-.+..++.+=..-+-.....++
T Consensus 34 ~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~- 112 (215)
T CHL00070 34 YCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK- 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Confidence 7899999988888888898766433 23344688999998888888875554444433221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
-|..-=..+++++++....++||-
T Consensus 113 pre~~W~~Gv~l~~l~m~~af~GY 136 (215)
T CHL00070 113 PRELTWVTGVVLAVLTVSFGVTGY 136 (215)
T ss_pred CcccCcHHHHHHHHHHHHHHHccc
Confidence 254556678888888888888884
No 48
>PRK03735 cytochrome b6; Provisional
Probab=63.39 E-value=18 Score=31.88 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhh-------------------cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYL-------------------RAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~-------------------~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
|+.|+++....+.-.+-|+..+.. +.|.+..+.|.++.=.+..++.+=..-+-.....++
T Consensus 42 ~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~- 120 (223)
T PRK03735 42 YCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKK- 120 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcC-
Confidence 789999988888888888776542 334455789999999999988876655544433221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
-|..-=..+++++++....++||-
T Consensus 121 pre~~W~~Gv~l~~l~~~~af~GY 144 (223)
T PRK03735 121 PRELNWVVGVLIFFVTVGLGFTGY 144 (223)
T ss_pred CCCceeHHHHHHHHHHHHHHhccc
Confidence 244445677888888888888885
No 49
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=63.12 E-value=55 Score=24.09 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=48.4
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC----C-----CCcchhHHHHHHHHHHHHHHHHhh-Hhhh-c-CChhHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAG----K-----LFPGPHLFAGAAITVLWALAAALV-PAMQ-K-GSETAR 168 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G----~-----Lf~gpHl~aGL~~v~L~l~Saal~-p~i~-k-g~~~aR 168 (203)
...-|..+|.+.+.+.++=.+. ....+.+.+ . ....+-...|..+..++++-+.++ +.+. + .-+.++
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~ 111 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGVL-YLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFY 111 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4458999999999888776553 333332221 1 123455567777666666544444 5555 3 347899
Q ss_pred HHHHHHHHHHHH
Q 028805 169 NLHIALNALNIL 180 (203)
Q Consensus 169 ~lHi~LN~llll 180 (203)
.+|.......++
T Consensus 112 ~~H~~~~~~~~l 123 (125)
T PF01794_consen 112 YLHILFYIAFLL 123 (125)
T ss_pred HHHHHHHHHHHH
Confidence 999996665544
No 50
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=62.63 E-value=1.3e+02 Score=28.50 Aligned_cols=126 Identities=11% Similarity=-0.000 Sum_probs=73.1
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHH
Q 028805 13 FGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEE 92 (203)
Q Consensus 13 ~~~~~g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 92 (203)
|....+..++-.+..+|..|+++-+.+.- +++|..+... .-
T Consensus 75 FP~~Ya~lfS~lYlpl~l~L~~LIlRgva--fEfR~k~~~~-------------------------------------~w 115 (378)
T PRK15028 75 WPRVYAAAFSGFYVAMILVLCSLFFRPLA--FDYRGKIADA-------------------------------------RW 115 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh--heecccCCCh-------------------------------------HH
Confidence 34445566777778888888777777653 4444221100 01
Q ss_pred HHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhc--C--------CCC---CcchhHHHHHHHHHHHHHHHHhhHh
Q 028805 93 RKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLR--A--------GKL---FPGPHLFAGAAITVLWALAAALVPA 159 (203)
Q Consensus 93 rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~--~--------G~L---f~gpHl~aGL~~v~L~l~Saal~p~ 159 (203)
| +.+|+-+-+||++..+...-++|.++.-.-- + |.. +..-=+.+|+..+.+.++.-+.--.
T Consensus 116 r------~~Wd~~f~vgS~l~~f~~Gv~~g~~v~G~p~~~d~~~~~~~~G~~~~~l~Pf~ll~Gl~~v~l~~l~Ga~~L~ 189 (378)
T PRK15028 116 R------KMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 (378)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHcCceecccccccccccccHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 5889999999999877665555444333222 1 221 2334677888888887776665544
Q ss_pred hhcC---ChhHHHHHHHHHHHHHHHHH
Q 028805 160 MQKG---SETARNLHIALNALNILLFI 183 (203)
Q Consensus 160 i~kg---~~~aR~lHi~LN~llllLFl 183 (203)
+.-. +.++|+....++++.+++|+
T Consensus 190 ~KT~g~l~~rar~~a~~~~~~~~~~~~ 216 (378)
T PRK15028 190 LKTVGVIHLRSQLATKRAALLVMLCFL 216 (378)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 55666665544444444333
No 51
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=61.72 E-value=16 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-HHHHhhhheeeeccccchHHHhhhc
Q 028805 29 MGSLLVYTLW-AGYLGWQWRRVRTIQTDINELKKQV 63 (203)
Q Consensus 29 M~~L~a~~ly-A~yLG~q~rr~rt~~~~i~~~k~~~ 63 (203)
.+.++..+.| ...+||.....++..+.-.||+|+.
T Consensus 42 ~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI 77 (91)
T PF08285_consen 42 FYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEI 77 (91)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4677788888 5678999988876666555555544
No 52
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=60.76 E-value=45 Score=27.88 Aligned_cols=58 Identities=17% Similarity=0.015 Sum_probs=46.2
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC-----CCCcchhHHHHHHHHHHHHHHHHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G-----~Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
.+..-|-.+|.+.+.+..+=.+.|...=+...- +-...-|-+.|+.+-.|.+.++.++
T Consensus 80 ~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG 142 (153)
T cd08765 80 NMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMG 142 (153)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999766544432 2335789999999998888877665
No 53
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=59.54 E-value=43 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=33.1
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHH
Q 028805 104 RHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVL 149 (203)
Q Consensus 104 ~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L 149 (203)
+..+.+..++++.++-.+.|+.+.+.+.-......|...+..+.+.
T Consensus 255 ~~~~~~~~~~~ll~~Qv~lGi~~v~~~~p~~l~~~H~~~a~ll~~~ 300 (302)
T PF02628_consen 255 ALRRLAVLLLALLLLQVLLGILTVLTGLPVWLALLHQAGAALLLAA 300 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4456677888888888898988777766444467888777766554
No 54
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=58.12 E-value=1.1e+02 Score=25.47 Aligned_cols=103 Identities=18% Similarity=0.109 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhheee-eccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhhhhh
Q 028805 24 VHPIVMGSLLVYTLWAGYLGWQWRRV-RTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYR 102 (203)
Q Consensus 24 ~HP~~M~~L~a~~lyA~yLG~q~rr~-rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~kg~~r 102 (203)
+.-+.++.|.++++.+.+....+... |..+ .+ +-+++++-++++-|+-
T Consensus 7 ~dy~i~~~L~~ms~~~~~~~ier~~~~~~~~--~~---------------------------~y~~~~~l~~~l~k~L-- 55 (138)
T TIGR02805 7 SDYFIFGILGLMSIIALAMVIERYLFLRKIS--VA---------------------------HYSTIHQLDIDLNRNL-- 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--HH---------------------------hcCCHHHHHHHHHcCC--
Confidence 34567888999999999988765422 0000 00 0111122222222211
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCC-cchhHHHHHHHHHHHHHHHHhh
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf-~gpHl~aGL~~v~L~l~Saal~ 157 (203)
.-=..+++..=.++++|+|.||+.|+...|.-. ..+-..++=.-.+|....+.+.
T Consensus 56 ~~L~ti~s~APllGLLGTV~GmI~~F~~lg~~g~~~~~~la~GIs~ALitTa~GL~ 111 (138)
T TIGR02805 56 TVISIIGSNAPYIGLLGTVIGIMVTFYQMGHGGGIDPSVIMLGLSLALKATALGLL 111 (138)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhHHHHHHHHHHHHHH
Confidence 122345777778999999999999998887543 3344444444444444444433
No 55
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=57.57 E-value=53 Score=26.70 Aligned_cols=81 Identities=27% Similarity=0.297 Sum_probs=46.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhh
Q 028805 20 SVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKG 99 (203)
Q Consensus 20 ~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~kg 99 (203)
++--+-+..-..++.+++-..++||+.||++..+++ ++ ++|-++.-|--.+
T Consensus 25 ~lp~~p~~~~~~l~~la~~~~~~a~~vr~~~~~~~~----~~-----------------------~~~P~~aar~~vL-- 75 (138)
T PF11377_consen 25 SLPPIPWTAGVTLLVLAAVELWLAWQVRRRIEIGPG----RR-----------------------QLNPLTAARTLVL-- 75 (138)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CC-----------------------CcCHHHHHHHHHH--
Confidence 333333444448888888899999999988622211 01 1222234443322
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCc
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFP 136 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~ 136 (203)
--.|.+.+-.+.|.-.|......+.+.+-.
T Consensus 76 -------AkAsa~~GA~l~G~~~G~~~~~l~~~~~~a 105 (138)
T PF11377_consen 76 -------AKASALAGALLAGWYAGQLVYLLRHGELPA 105 (138)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 223556666667777788888776666653
No 56
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=57.11 E-value=1.3e+02 Score=25.98 Aligned_cols=58 Identities=22% Similarity=0.095 Sum_probs=46.1
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
.+-..|-.+|.+.+.+..+=.+.|...=+....+ -.-..|.+.|+.+-.|-+.++.++
T Consensus 103 nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lG 165 (179)
T cd08762 103 NLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISG 165 (179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999885544433 224789999999988888777665
No 57
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=56.53 E-value=72 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~I 192 (203)
++.+|..+.+..+...+.=++||+-+
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999743
No 58
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=55.85 E-value=74 Score=26.33 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=47.1
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhc-CC---CCC----cchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLR-AG---KLF----PGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIAL 174 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~-~G---~Lf----~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi~L 174 (203)
+.|-++|..+....-....++...+|+. +. +.+ ..++...+..-|.+++.|-.+.....+ .-..++-.-..
T Consensus 6 ~~~~~~g~~lfi~se~~~F~~l~~~y~~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~~~~~a~~-a~~~~~~~~~~ 84 (186)
T cd02862 6 RLPGKLGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVR-AARAGRRRRAR 84 (186)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCccCCccHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHH
Confidence 4455688888877777777888888872 21 112 123456677777777776544444322 01111122233
Q ss_pred HHHHHHHHHHHhhhhHHHH
Q 028805 175 NALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 175 N~llllLFl~QaiTG~~IV 193 (203)
..+.+.+.+..++.+.|+.
T Consensus 85 ~~L~~t~~lg~~Fl~~q~~ 103 (186)
T cd02862 85 RWLAAAVLLGLVFLVIKYF 103 (186)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455554433
No 59
>COG3658 Cytochrome b [Energy production and conversion]
Probab=55.66 E-value=59 Score=28.40 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhhhh--hHhHHhH
Q 028805 31 SLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSY--RDRHYNA 108 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~kg~~--r~~H~~~ 108 (203)
+.+++++.+.-|+|-+--..+.. . ...+|||. +--+.=||.+.|+- -.-|.-+
T Consensus 41 Gyav~allalRL~WG~igs~~AR--f------------------~af~pspa-----~a~~~lke~~~gr~~~h~gHNPl 95 (192)
T COG3658 41 GYAVLALLALRLCWGIIGSDTAR--F------------------SAFVPSPA-----GAREYLKEGIPGREHIHPGHNPL 95 (192)
T ss_pred HHHHHHHHHHHHHhcccccchhh--h------------------hccCCChH-----HHHHHHHhhccCCccCCCCCCch
Confidence 77888888999999887553332 1 14566664 23456677777543 2568889
Q ss_pred HHHHH-HHHHHHhhhhhhhhhhcCCC
Q 028805 109 GSILL-GFGVLESVGGGVNTYLRAGK 133 (203)
Q Consensus 109 Gsill-~l~vlg~vgG~~~T~~~~G~ 133 (203)
|.+|+ +++.+.++.|..+-+-+..+
T Consensus 96 GAlmv~Amw~~l~~~v~TG~lar~d~ 121 (192)
T COG3658 96 GALMVVAMWALLLAQVGTGWLARDDN 121 (192)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99998 77777777777766655543
No 60
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=53.92 E-value=1.3e+02 Score=25.02 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=42.3
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLF 182 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLF 182 (203)
.+....|-+++ .++.+.|.+=....+|.-+..-|=..-- .+..++.++.+--...+ .|.++.-..++++.+ ++
T Consensus 126 ~~~~~~gf~~l---ti~l~~G~~wa~~~wG~~w~wDpk~~~s-li~Wl~y~~~lh~r~~~--~~~gr~~a~~~i~gf-~~ 198 (214)
T PF01578_consen 126 YRLILIGFILL---TIGLITGAIWAKDSWGSYWSWDPKEVWS-LITWLVYGAYLHLRSWK--GWRGRRAAYLSIIGF-LL 198 (214)
T ss_pred HHHHHHHHHHH---HHHHccHHHHHHHhccchhHHhHHHHHH-HHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHH-HH
Confidence 44455555444 4556677777788888777434443322 23333333444333333 333333344555543 34
Q ss_pred HHHhhhhHHHHH
Q 028805 183 IWQIPTGIDIVF 194 (203)
Q Consensus 183 l~QaiTG~~IVq 194 (203)
+.-++.|+..+.
T Consensus 199 ~~~~~~gv~~~~ 210 (214)
T PF01578_consen 199 LLLSYFGVNLLL 210 (214)
T ss_pred HHHHHHHHHHhc
Confidence 455556665543
No 61
>PLN02810 carbon-monoxide oxygenase
Probab=53.86 E-value=1.2e+02 Score=27.32 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=58.1
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhhHh-----hh-cCChhHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVPA-----MQ-KGSETAR 168 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~p~-----i~-kg~~~aR 168 (203)
.+-..|-.+|...+.+..+=.+.|+..=+....+ ..-..|.+.|+.+-.|.+.++.++-. .+ ++-.+..
T Consensus 112 nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~ 191 (231)
T PLN02810 112 NLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYG 191 (231)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 5678999999999999999999998765554433 22478999999999888887766532 11 1112222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028805 169 NLHIALNALNILLFIWQ 185 (203)
Q Consensus 169 ~lHi~LN~llllLFl~Q 185 (203)
.-=...|++-+++.+.-
T Consensus 192 ~Ea~lvN~~Glliv~fg 208 (231)
T PLN02810 192 SEALLVNFTAIITILYG 208 (231)
T ss_pred chhhhHHHHHHHHHHHH
Confidence 33346677666655543
No 62
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=52.77 E-value=93 Score=23.06 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=27.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWA 151 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l 151 (203)
..+++|+..-.+-+.+.+++++.+.++...-. .+++-+..++.+.+-+
T Consensus 13 ~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~~~----~~~~~~~~~~~~~l~~ 60 (112)
T PF14015_consen 13 RAQRRYRRLRIASIILSVLGAVIPVLASLSGL----GGGSSWLKLVAAILSA 60 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHH
Confidence 56677777777777777777777764444332 2244444444443333
No 63
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=52.01 E-value=1.9e+02 Score=26.47 Aligned_cols=129 Identities=21% Similarity=0.216 Sum_probs=74.0
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHH
Q 028805 13 FGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEE 92 (203)
Q Consensus 13 ~~~~~g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 92 (203)
|.....-.++-.++.+|..|+++.+.+...-++-+.. + +..
T Consensus 70 FP~~ya~l~s~lylpl~liL~~li~RgvafefR~~~~---~------------------------------------~~~ 110 (328)
T PF02322_consen 70 FPLAYATLFSGLYLPLFLILLGLILRGVAFEFRHKAD---S------------------------------------PRW 110 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C------------------------------------hhh
Confidence 3344555667777788888888887776554433311 1 011
Q ss_pred HHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC---------CCCcchhHHHHHHHHHHHHHHHHhhHhhhcC
Q 028805 93 RKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG---------KLFPGPHLFAGAAITVLWALAAALVPAMQKG 163 (203)
Q Consensus 93 rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G---------~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg 163 (203)
| ..+|+=+-.||++..+....+++.++.-.--+. +++..-=+..|+..+.+.+.-.+.--...-.
T Consensus 111 r------~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~~~~GA~~l~~kt~ 184 (328)
T PF02322_consen 111 R------RFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALFALHGAVFLALKTE 184 (328)
T ss_pred H------HHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 578999999999987776666554443322221 1223344566776666665544333332221
Q ss_pred ---ChhHHHHHHHHHHHHHHHHHHHh
Q 028805 164 ---SETARNLHIALNALNILLFIWQI 186 (203)
Q Consensus 164 ---~~~aR~lHi~LN~llllLFl~Qa 186 (203)
+.++|+.......+.+++++.-+
T Consensus 185 g~l~~rar~~a~~~~~~~~~~~~~~~ 210 (328)
T PF02322_consen 185 GELRERARRWALRLGLAALVLFLAFA 210 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666655443
No 64
>PRK13685 hypothetical protein; Provisional
Probab=51.98 E-value=41 Score=30.25 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 028805 21 VALVHPIVMGSLLVYTLW 38 (203)
Q Consensus 21 ~~~~HP~~M~~L~a~~ly 38 (203)
++|.||...+.++...++
T Consensus 4 ~~F~~P~~l~ll~~~~~~ 21 (326)
T PRK13685 4 SGFAHPWFFLFLLVVAAL 21 (326)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 579999877765554333
No 65
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=51.08 E-value=83 Score=29.78 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHHHHHhh-----HhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HhhcCCC
Q 028805 137 GPHLFAGAAITVLWALAAALV-----PAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKV--LEFTKWP 203 (203)
Q Consensus 137 gpHl~aGL~~v~L~l~Saal~-----p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~~IVqk~--l~~~~~p 203 (203)
..|+..|+++.++++.-+... +.... .+..+.+ -.+..+.+++-..|+++|.-+-..+ +.+++||
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~-~~~~~~l-r~l~~~~~~l~~lqI~lGa~Vag~~AGlac~~wP 290 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAP-FPELLKM-RLLARGLFALVFLTAMSGAFVAGNDAGLAYNTWP 290 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccc-cccchhH-HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC
Confidence 689999998877766655322 11110 1111222 1233455666678999997766643 4556666
No 66
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=50.16 E-value=1.3e+02 Score=24.60 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=31.5
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcC--CC-------CCcchhHHHHHHHHHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA--GK-------LFPGPHLFAGAAITVLWALA 153 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~--G~-------Lf~gpHl~aGL~~v~L~l~S 153 (203)
..|--|......++++.+.|...+- .+... |+ .....|.++|..+++++++-
T Consensus 6 ~~R~~HW~~a~~~i~l~~tG~~~~~--~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~r 66 (211)
T TIGR02125 6 PVRLFHWVRALAIFVLIVTGFYIAY--PFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFR 66 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--CCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677898877666666666654321 11110 11 12366999999999888753
No 67
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=49.80 E-value=7.2 Score=35.90 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHh-hhheeeeccccchHHHhhhcCCC
Q 028805 27 IVMGSLLVYTLWAGYLG-WQWRRVRTIQTDINELKKQVKPT 66 (203)
Q Consensus 27 ~~M~~L~a~~lyA~yLG-~q~rr~rt~~~~i~~~k~~~~~~ 66 (203)
.+.|.++++-+-+.+|| ||.+|...--+-|++||++|--.
T Consensus 58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~ 98 (288)
T KOG1563|consen 58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQE 98 (288)
T ss_pred hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCC
Confidence 34558899999999999 99999988888899999998644
No 68
>PRK11513 cytochrome b561; Provisional
Probab=49.70 E-value=1.4e+02 Score=24.80 Aligned_cols=87 Identities=18% Similarity=0.106 Sum_probs=44.6
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHh-----hhcC-Chh----HHHH
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPA-----MQKG-SET----ARNL 170 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~-----i~kg-~~~----aR~l 170 (203)
.|-.|+-...++++.+..+-.-+.... .....+...|...|+.+.+|+++=....-. ..++ ++| ++..
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~ 86 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLG 86 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 567788655544444433322111111 111234578999999999998875443221 1111 222 3446
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Q 028805 171 HIALNALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 171 Hi~LN~llllLFl~QaiTG~~IV 193 (203)
|..+. ++.+.+.+||+-..
T Consensus 87 H~~LY----~lli~~plsG~~~~ 105 (176)
T PRK11513 87 HLVIY----LLFIALPVIGLVMM 105 (176)
T ss_pred HHHHH----HHHHHHHHHHHHHH
Confidence 65444 44455666777543
No 69
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=49.30 E-value=1.3e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=16.2
Q ss_pred hHHHH--HHHHHHHHHHHHhhhheeeeccccc
Q 028805 26 PIVMG--SLLVYTLWAGYLGWQWRRVRTIQTD 55 (203)
Q Consensus 26 P~~M~--~L~a~~lyA~yLG~q~rr~rt~~~~ 55 (203)
|.+|. .-..+..|..-++.-.-|.|...++
T Consensus 5 P~fLlsaig~ll~~~tnRl~ri~dR~R~L~~~ 36 (130)
T PF11026_consen 5 PAFLLSAIGLLLLVLTNRLARIVDRIRQLHDE 36 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67776 3333445555566555555555443
No 70
>COG1290 QcrB Cytochrome b subunit of the bc complex [Energy production and conversion]
Probab=49.10 E-value=71 Score=30.39 Aligned_cols=85 Identities=21% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhhhhcCCC-------------------CCcchhHHHHHHHHHHHHHHHHhhHhhhcCCh
Q 028805 105 HYNAGSILLGFGVLESVGGGVNTYLRAGK-------------------LFPGPHLFAGAAITVLWALAAALVPAMQKGSE 165 (203)
Q Consensus 105 H~~~Gsill~l~vlg~vgG~~~T~~~~G~-------------------Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~ 165 (203)
=|..|++++..++.-.+-|+..+....-+ ++.+.|.|++-.|..++.+-..-.-.....+
T Consensus 38 ~y~~G~l~~~~~v~~v~tGi~L~~~Y~p~~~~a~~S~~~i~~~V~~Gw~lr~~H~~~A~~m~~~~~iHm~r~~~~Gayk- 116 (381)
T COG1290 38 AYPLGGLLLFLFVIQVITGIFLALYYVPSAGLAFPSVPFIMREVPYGWLLRYMHLWGASLMFALVYLHMFRGFFYGAYK- 116 (381)
T ss_pred hhhhHHHHHHHHHHHHHHHHHheeEecCCCccccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccceec-
Confidence 35678888877777777777665443322 5578999999999999888666555554333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 166 TARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 166 ~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
..|.+=-++.++++++...++++|-
T Consensus 117 kPRel~Wi~Gvll~ll~~~~a~~GY 141 (381)
T COG1290 117 KPRELNWILGVLLFLLTMATAFFGY 141 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788888899999999999998884
No 71
>PRK12482 flagellar motor protein MotA; Provisional
Probab=48.48 E-value=1e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=35.1
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 028805 82 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK 133 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~ 133 (203)
.|.+|+..+++.++ ..+-=..+|..+=+++++|++.|++.+..+-++
T Consensus 147 Le~eie~~~~r~~~-----~a~v~~~~a~~aPa~GiiGtvlGLI~mL~~L~d 193 (287)
T PRK12482 147 LDQELDAVEEELLQ-----PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDG 193 (287)
T ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHHHchHHHHHHHHHHHHHHHHhcCC
Confidence 45566666666664 223335688999999999999999999999865
No 72
>PRK09609 hypothetical protein; Provisional
Probab=47.32 E-value=63 Score=30.20 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh------------heeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhH
Q 028805 23 LVHPIVMGSLLVYTLWAGYLGWQ------------WRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLT 90 (203)
Q Consensus 23 ~~HP~~M~~L~a~~lyA~yLG~q------------~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 90 (203)
-.||..+.+....++-+++.+|- .|-. .-+++|...|+|..-+...|+- +. ..-.+++|.-++
T Consensus 77 ~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~---~~-~~~~~~ki~~~~ 151 (312)
T PRK09609 77 VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIK-RYDNKIFKQKEQYDFALENPNS---EK-IQKIKQKIILLE 151 (312)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHhcCCCc---HH-HHHHHHHHHHHH
Confidence 55899988766777766666443 2222 3366888888886544322220 00 223455666677
Q ss_pred HHHHHHhhhhhhHhHHh
Q 028805 91 EERKELLKGSYRDRHYN 107 (203)
Q Consensus 91 ~~rK~l~kg~~r~~H~~ 107 (203)
++||.+-+.+ .++|..
T Consensus 152 ~k~~~~~~~~-~~~~~l 167 (312)
T PRK09609 152 KKKKKLEKTN-EEKSLL 167 (312)
T ss_pred HHHHHHHhcC-Ccchhh
Confidence 7777665433 334443
No 73
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=46.96 E-value=84 Score=23.72 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhcC---ChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028805 139 HLFAGAAITVLWALAAALVPAMQKG---SETARNLHIALNALNILLFIWQIPTGID 191 (203)
Q Consensus 139 Hl~aGL~~v~L~l~Saal~p~i~kg---~~~aR~lHi~LN~llllLFl~QaiTG~~ 191 (203)
.-..|+.+.++.++...+.|.+++. +..-|..+.....+.+..|..=.+-|.+
T Consensus 29 ~k~~Gv~~~~~~~~~l~~lP~ld~~~~~~~~~rp~~~~~~~~~v~~~~~L~~lG~~ 84 (102)
T PF00032_consen 29 NKLGGVIAMGLSILILFLLPFLDRSPVRSPRFRPIFRAAFWLFVISFIVLTWLGSQ 84 (102)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHTSCSSSSCGGSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccceeeecchhhhhHHHHHhhcchhhhhhhhcccccchhhhHHhHHHHHHHHhcC
Confidence 3358888888888899999999763 4445677766666666666665555543
No 74
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=46.60 E-value=1.4e+02 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGKL 134 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~L 134 (203)
..++++.-.++++|++.|++.++.+.+.-
T Consensus 59 ~~i~~~aP~lGLlGTv~Gmi~~f~~l~~~ 87 (139)
T PF01618_consen 59 RTIASIAPLLGLLGTVIGMIEAFQALAET 87 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677778999999999999999888643
No 75
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=46.15 E-value=95 Score=28.41 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=59.3
Q ss_pred hhHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHH--HHHHHHhhH
Q 028805 81 PVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVL--WALAAALVP 158 (203)
Q Consensus 81 ~~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L--~l~Saal~p 158 (203)
-.|.+|++++|+.+ ....-=-.+|-.+=++++.|++.|.+.+..+-++--.=-|..++..++-+ +.+++++..
T Consensus 128 ~me~Ei~~~ee~~~-----~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~p~~LG~~iA~Alv~T~~Gi~~ay~~~~ 202 (266)
T COG1291 128 LMEEEIETMEERHE-----KPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDDPAELGALIAAALVGTLYGIFLAYGLFG 202 (266)
T ss_pred HHHHHHHHHHHHHh-----hHHHHHHHHHhhCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667766665555 45555567899999999999999999999998872222222233222222 234444444
Q ss_pred hhhcC-ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 159 AMQKG-SETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 159 ~i~kg-~~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
-+..+ +...-.-+-.-.++.-.+...|.=.-
T Consensus 203 P~a~kLk~~~~~e~~~~~~i~e~ll~i~~G~n 234 (266)
T COG1291 203 PLANKLKQKSDEEVKLKEIIIEGLLAIQNGEN 234 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44321 11111234455666666666664333
No 76
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=45.78 E-value=1.2e+02 Score=27.47 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=66.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCC----------------CC-----------
Q 028805 20 SVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTP----------------DG----------- 72 (203)
Q Consensus 20 ~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~----------------~g----------- 72 (203)
-.+|+||-.....+..++-|....+.++.... -++.+|+.+.+....+ +|
T Consensus 32 ~~~~~~~~s~lIV~GGt~~a~lis~p~~~~~~---~~k~l~~~f~~~~~~~~~~i~~l~~la~~aRk~GlLaLE~~~~~~ 108 (271)
T PRK06926 32 FLSFIDLTSILIVTGGLCAALFISFSPKDLKL---APRVLKQAFQSQEDDVEELVQTFVSLSEKARREGLLSLEAELEEV 108 (271)
T ss_pred hHHHhhHhHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHHHHhhhcCC
Confidence 46889999988888888888877776664432 2233334443322111 12
Q ss_pred ---------------CCCCCCCChhHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 028805 73 ---------------APAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK 133 (203)
Q Consensus 73 ---------------~~~~~~~~~~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~ 133 (203)
.++..-..-.|.+|+..+++.++- ..-=..+|...=+++++|++.|++.+..+-++
T Consensus 109 ~d~Fl~~gl~lvvDG~~~~~i~~iLe~ei~~~~~r~~~~-----~~v~~~~g~~APafGmiGTviGLI~mL~~L~d 179 (271)
T PRK06926 109 KDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKG-----RRIFEKAGEYAPAWGMIGTLVGLVLMLKNLND 179 (271)
T ss_pred CChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHchHHHHHHHHHHHHHHHHhcCC
Confidence 111111112456666666666542 23335688999999999999999999999976
No 77
>COG3295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.64 E-value=20 Score=31.82 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=24.2
Q ss_pred HhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 158 PAMQKGSETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 158 p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
..++++|+|.|.+|......-+++-+.=++||+
T Consensus 16 ~~~~rrnkWLR~lH~W~~~~slv~~LlFaltGi 48 (213)
T COG3295 16 RAEHRRNKWLRKLHQWSGAWSLVGMLLFALTGI 48 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 345667999999999877666555555567775
No 78
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=44.58 E-value=1.9e+02 Score=26.09 Aligned_cols=11 Identities=9% Similarity=-0.263 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 028805 144 AAITVLWALAA 154 (203)
Q Consensus 144 L~~v~L~l~Sa 154 (203)
..-.+|++.|.
T Consensus 88 ~fF~GLIlgSi 98 (257)
T PF04018_consen 88 SFFFGLILGSI 98 (257)
T ss_pred HHHHHHHHHHH
Confidence 33445554443
No 79
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=44.36 E-value=1.2e+02 Score=26.02 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcC
Q 028805 109 GSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKG 163 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg 163 (203)
=.+-.++++++++ +..+.....+..=++||.-++...+.-+.+...+.|+..+.
T Consensus 21 ~~i~~~l~Ll~av-~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~~~Ry 74 (161)
T COG3402 21 EWIPIALVLLIAV-AAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQLVRY 74 (161)
T ss_pred HHHHHHHHHHHHH-HHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 3455566666666 55566665555556788888888888899999999976553
No 80
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=43.88 E-value=1.9e+02 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 165 ETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 165 ~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
.++|.+|...-.++++++.++++-..
T Consensus 145 ~~~~~~H~~~a~l~~~~vi~Hiy~a~ 170 (204)
T TIGR01583 145 RISALIHNFSAIILAVGFIVHIYMAV 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888877653
No 81
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=43.67 E-value=1.2e+02 Score=21.71 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHH-HHHHH
Q 028805 22 ALVHPIVMGSLLVYTL-WAGYL 42 (203)
Q Consensus 22 ~~~HP~~M~~L~a~~l-yA~yL 42 (203)
.|.||...+.+++..+ +..+.
T Consensus 3 ~F~~P~~L~~Llllp~~i~~~~ 24 (77)
T PF07584_consen 3 SFLNPWYLWLLLLLPLPIIIHY 24 (77)
T ss_pred chHhHHHHHHHHHHHHHHHHHH
Confidence 6889999998887777 44444
No 82
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=43.08 E-value=1.6e+02 Score=22.89 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhhhcCChh--HHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 137 GPHLFAGAAITVLWALAAALVPAMQKGSET--ARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 137 gpHl~aGL~~v~L~l~Saal~p~i~kg~~~--aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
..|..+=.+-.+++++++.++-...++.|. .-++|..+..+++.+...|.+.|+
T Consensus 45 r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv 100 (105)
T PF10348_consen 45 RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHGKMGWILFVLMIVQVILGV 100 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 348887777778888888877665544322 477999999999999999999885
No 83
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=42.89 E-value=1.9e+02 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=19.6
Q ss_pred hhHHHH-HHHHHHHHHHHHhhhheee
Q 028805 25 HPIVMG-SLLVYTLWAGYLGWQWRRV 49 (203)
Q Consensus 25 HP~~M~-~L~a~~lyA~yLG~q~rr~ 49 (203)
+|..+. .=++.+.|-.|+||+.-|+
T Consensus 68 ~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 68 SLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 465555 6677889999999998866
No 84
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=42.59 E-value=72 Score=22.00 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Q 028805 164 SETARNLHIALNALNILLFIWQI 186 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~Qa 186 (203)
+..+|.+|.......+++...+.
T Consensus 38 ~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 38 KHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666654
No 85
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=42.08 E-value=1.7e+02 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhHhHHhHH
Q 028805 90 TEERKELLKGSYRDRHYNAG 109 (203)
Q Consensus 90 ~~~rK~l~kg~~r~~H~~~G 109 (203)
+|||.+.|..+--.+=.+.-
T Consensus 53 eDER~~~I~ekAs~~Tl~V~ 72 (111)
T PF09946_consen 53 EDERTERISEKASRRTLQVF 72 (111)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 78999999887666655543
No 86
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=41.27 E-value=2.4e+02 Score=24.45 Aligned_cols=49 Identities=18% Similarity=-0.023 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHH
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAA 155 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saa 155 (203)
+.-.+-+.+..++.+.|.+=+...+|+.+...|=...-.++-++-.++.
T Consensus 153 ~~~~~Gf~~ltl~li~G~iWa~~~wg~~w~wDpK~~~sli~Wl~Y~~~l 201 (243)
T TIGR03144 153 RTIAIGFPLLTIGIISGAVWANEAWGSYWSWDPKETWALITWLIYAAYL 201 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333444555666778888888889998865666665444444433333
No 87
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.12 E-value=1.6e+02 Score=26.00 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=64.9
Q ss_pred hhhhhhhHHHHHH--HHHHHH---HHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHH
Q 028805 20 SVALVHPIVMGSL--LVYTLW---AGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERK 94 (203)
Q Consensus 20 ~~~~~HP~~M~~L--~a~~ly---A~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK 94 (203)
.++..||.+-..+ ...++| .-++-.-|-|-+..+++.+|+||...++. .+..+.++++|.++|.
T Consensus 40 ~i~~~~p~lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~-----------~~~d~~~lkkLq~~qm 108 (201)
T COG1422 40 LLSPLPPHLVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQ-----------ESGDMKKLKKLQEKQM 108 (201)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------HhCCHHHHHHHHHHHH
Confidence 3455788654322 122233 22333333333444555555555554442 3334677888888876
Q ss_pred H-------HhhhhhhHhHHhHHHHHH-HHHHHHhhhhhhhh-------hhcCCC-CCcchh-----HHHHHHHHHHHHHH
Q 028805 95 E-------LLKGSYRDRHYNAGSILL-GFGVLESVGGGVNT-------YLRAGK-LFPGPH-----LFAGAAITVLWALA 153 (203)
Q Consensus 95 ~-------l~kg~~r~~H~~~Gsill-~l~vlg~vgG~~~T-------~~~~G~-Lf~gpH-----l~aGL~~v~L~l~S 153 (203)
| +.|-.||.-=+.+=.+.+ +.++---+++.... +.-.+. ++++.| .|.|+=.++=+++|
T Consensus 109 em~~~Q~elmk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWi~WYfLcS~~vs 188 (201)
T COG1422 109 EMMDDQRELMKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDFLGWIGWYFLCSFVVS 188 (201)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccchHHHHHHHHHHHHHH
Confidence 4 566677766666554444 44444333332221 111222 234555 46666666666666
Q ss_pred HHhhHhh
Q 028805 154 AALVPAM 160 (203)
Q Consensus 154 aal~p~i 160 (203)
..+.+.+
T Consensus 189 ~ilrk~l 195 (201)
T COG1422 189 QILRKVL 195 (201)
T ss_pred HHHHHHH
Confidence 6555544
No 88
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=40.63 E-value=2e+02 Score=23.51 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 165 ETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 165 ~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
..+|.+|..+-.+++++++.+++-.+
T Consensus 163 ~~~~~iH~~~a~~l~~~i~~Hi~~a~ 188 (211)
T TIGR02125 163 ANVRFIHHLGMWAFVIFVPVHVYMAV 188 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788998888888888888877643
No 89
>PRK09110 flagellar motor protein MotA; Validated
Probab=40.27 E-value=2.6e+02 Score=25.47 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=32.8
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC
Q 028805 82 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG 132 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G 132 (203)
.|.+|+..++++++ ..+-=..+|..+=+++++|++.|++.+..+-+
T Consensus 147 Le~ei~~~~~~~~~-----~~~v~~~~g~~aPa~GiiGtv~GLI~~l~~l~ 192 (283)
T PRK09110 147 MDEEIETHHHEAEV-----PAHALQKVADALPAFGIVAAVLGVVKTMGSID 192 (283)
T ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHhhCchhHHHHHHHHHHHHHHhcC
Confidence 45555555555553 22233468888889999999999999998875
No 90
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=39.82 E-value=1.7e+02 Score=22.45 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhh--hcCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 028805 95 ELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTY--LRAGKLFPGPHLFAGAAITVLWALAAALV 157 (203)
Q Consensus 95 ~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~--~~~G~Lf~gpHl~aGL~~v~L~l~Saal~ 157 (203)
|.+|+-.+|-=--.|.++.+...+.-...++.|| .|.||--|+.=.......++|+.++.++.
T Consensus 17 ~~i~~y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 17 ETIKGYAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4566677777777777666555555555555555 34566655544444444444555544443
No 91
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.46 E-value=32 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=11.7
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhH
Q 028805 82 VEIKIQQLTEERKELLKGSYRDRHYNA 108 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~kg~~r~~H~~~ 108 (203)
++.+|++|.+.|+.|+ ++|..+
T Consensus 24 id~qIaeLe~KR~~Lv-----~qHP~i 45 (46)
T PF08946_consen 24 IDEQIAELEAKRQRLV-----DQHPRI 45 (46)
T ss_dssp HHHHHHHHHHHHHHHH-----HH----
T ss_pred HHHHHHHHHHHHHHHH-----HhCCCC
Confidence 4566777777777544 667653
No 92
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=38.55 E-value=50 Score=20.12 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=15.9
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhh
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGV 125 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~ 125 (203)
++|.|...+-+...+++..++.|.+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566776666666666666666654
No 93
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=38.46 E-value=2e+02 Score=25.13 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCC-cchhHHHHHHHHHHHHHHHHhhHh
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALVPA 159 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf-~gpHl~aGL~~v~L~l~Saal~p~ 159 (203)
.++++-=.++++|+|.||+.++..-+.-. ..|-..++=.-.+|+..++.+.-.
T Consensus 129 ti~~~aP~lGLlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitTa~GL~vA 182 (227)
T PRK10801 129 TVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAA 182 (227)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666668999999999999998887544 345555555555555555544433
No 94
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=38.34 E-value=95 Score=27.91 Aligned_cols=27 Identities=4% Similarity=-0.137 Sum_probs=13.0
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhhhhhhhh
Q 028805 99 GSYRDRHYNAGSILLGFGVLESVGGGVNT 127 (203)
Q Consensus 99 g~~r~~H~~~Gsill~l~vlg~vgG~~~T 127 (203)
|....++....++ .+.+++.+.|...+
T Consensus 94 G~is~~~a~~~~~--~l~~~~~~lg~~l~ 120 (306)
T TIGR02056 94 GAISEPEVITQIV--LLFIAGIAIAFILD 120 (306)
T ss_pred CccCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4555666554443 33344444555444
No 95
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=38.28 E-value=27 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCChhHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHH
Q 028805 78 APSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILL 113 (203)
Q Consensus 78 ~~~~~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill 113 (203)
|+|.+..||+.|.++||++.+.. --++|.+.+
T Consensus 4 ~~s~I~~eI~kLqe~lk~~e~ke----AERigRiAl 35 (98)
T PRK13848 4 PSSKIREEIAKLQEQLKQAETRE----AERIGRIAL 35 (98)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 56788999999999999988743 345566555
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.13 E-value=74 Score=26.03 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=31.9
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-CCcchhHHHHHHHHH--HHHHHHHhhHhhhc
Q 028805 104 RHYNAGSILLGFGVLESVGGGVNTYLRAGK-LFPGPHLFAGAAITV--LWALAAALVPAMQK 162 (203)
Q Consensus 104 ~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-Lf~gpHl~aGL~~v~--L~l~Saal~p~i~k 162 (203)
.|.-+..+.+.++++..++|++. ..-.+. +....-...|+++++ +++++..+.-.+.+
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~-Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~ 63 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAA-LVLFISGLGALISFILGIALLALGVVLLSLGLLCLLSK 63 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566777888888866666655 333332 444444555555554 55555555444433
No 97
>PRK08124 flagellar motor protein MotA; Validated
Probab=37.90 E-value=3e+02 Score=24.58 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGK 133 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~ 133 (203)
.+|.+.=+++++|++.|++.+..+-++
T Consensus 149 ~ia~~AP~lGllGTVlGlI~~f~~l~~ 175 (263)
T PRK08124 149 QAGTYAPTLGVLGAVIGLIAALGNLSD 175 (263)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccC
Confidence 456667789999999999999998875
No 98
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=37.68 E-value=1.7e+02 Score=21.95 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=11.7
Q ss_pred hhhhhHhHHhHHHHHHHHHH
Q 028805 98 KGSYRDRHYNAGSILLGFGV 117 (203)
Q Consensus 98 kg~~r~~H~~~Gsill~l~v 117 (203)
||..+++.|.+..+...+..
T Consensus 6 ~GR~~R~~fw~~~l~~~~~~ 25 (120)
T PF05656_consen 6 KGRISRKEFWWFFLINILIF 25 (120)
T ss_pred cCCcCHHHHHHHHHHHHHHH
Confidence 35666777776666554433
No 99
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=37.51 E-value=2.7e+02 Score=24.03 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=47.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhh-cCCCCCcch-hHH-HHHHHHHHHHHHHHhhHh--h-h-cCChhHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYL-RAGKLFPGP-HLF-AGAAITVLWALAAALVPA--M-Q-KGSETARNLHI 172 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~-~~G~Lf~gp-Hl~-aGL~~v~L~l~Saal~p~--i-~-kg~~~aR~lHi 172 (203)
..+.-|...|.+++++.++-.+-|.++.-. |+.....++ .-+ ..+.-. +-.+..... . + ..|+..+..
T Consensus 58 ~~~~~H~~~G~~~~~~~~~Rl~w~~~g~~~aR~~~f~~~~~~~~~~~~~~~---~~~yl~~~~~~~~~~ghNplg~~~-- 132 (235)
T PRK10171 58 YIRLIHFSAGMIFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYE---IRWYLFLAKRPSADIGHNPIAQAA-- 132 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhhhcCccccHHHHHHHHHH---HHHHHhcCCCCCCCCCCCHHHHHH--
Confidence 456789999999999999998888876433 332211221 111 111000 011111100 0 1 124444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH
Q 028805 173 ALNALNILLFIWQIPTGIDIVF 194 (203)
Q Consensus 173 ~LN~llllLFl~QaiTG~~IVq 194 (203)
+..++++.+.|++||+-+..
T Consensus 133 --~~~l~~l~~~~iiTGl~l~~ 152 (235)
T PRK10171 133 --MFGYFLMSVFMIITGFALYS 152 (235)
T ss_pred --HHHHHHHHHHHHHHHHHHhh
Confidence 44566788999999986653
No 100
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=37.40 E-value=2.5e+02 Score=24.63 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.5
Q ss_pred hhhHhHHhHHHHHHHHHH--HHhhhhhhhhhhcCC
Q 028805 100 SYRDRHYNAGSILLGFGV--LESVGGGVNTYLRAG 132 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~v--lg~vgG~~~T~~~~G 132 (203)
..+++|..+|.+.+++.+ -..+.+-..+|.++.
T Consensus 136 ~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~ 170 (310)
T TIGR01272 136 AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDP 170 (310)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456889999987777666 345666678888653
No 101
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=36.82 E-value=1.7e+02 Score=25.48 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=45.1
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCC---cchhH------HHHHH--HHHHHHHHHHhhHhhhcCChhHHHH
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF---PGPHL------FAGAA--ITVLWALAAALVPAMQKGSETARNL 170 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf---~gpHl------~aGL~--~v~L~l~Saal~p~i~kg~~~aR~l 170 (203)
.+|=-.+||.+.=.+++..+.|=+....--...+ .+.|. +.|.. ++.+......+...+. ++..|..
T Consensus 43 ~~k~l~~gs~lFH~gil~v~~gH~~g~l~p~~~~~~~~~~~~~~~~a~~~G~~aGi~~liGl~~Ll~RRl~--~~~vr~~ 120 (224)
T TIGR00351 43 DKKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYAAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLF--SPRVRAT 120 (224)
T ss_pred hcCcHHhhHHHHHHHHHHHHHHHHHHhccchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCccccc
Confidence 3445567777765555555555444222211111 23332 23422 2222223333333332 3444554
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH
Q 028805 171 HIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 171 Hi~LN~llllLFl~QaiTG~~I 192 (203)
-..--.+++++.+.|+.||.-.
T Consensus 121 s~~~D~~~L~lLl~i~~tGl~~ 142 (224)
T TIGR00351 121 STGADILILSLLLIQCLLGLLT 142 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888889999999644
No 102
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=36.55 E-value=2.4e+02 Score=23.21 Aligned_cols=57 Identities=11% Similarity=-0.158 Sum_probs=33.0
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCC---CCCc---chhHHHHHHHHHHHHHHHHhhHh
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAG---KLFP---GPHLFAGAAITVLWALAAALVPA 159 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G---~Lf~---gpHl~aGL~~v~L~l~Saal~p~ 159 (203)
+.|.++|..+....-....++...+|...- +..+ .+....++.-|.+++.|-.+...
T Consensus 6 ~~~~~~g~w~fi~se~~~F~~l~~~y~~~~~~~~~~p~~~~~~~~~~~~nT~lLl~Ss~~~~~ 68 (184)
T cd02865 6 RSPGWWGLWVFMAVEGTLFALLISAYFMRMTSGDWQPGAPLPLPNLLSLNTAVLAASSVAMQW 68 (184)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Confidence 567778888877666666666666664331 1121 22345666777777766544433
No 103
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=35.94 E-value=1.4e+02 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHhhhhhhHhHHhHHHHHH
Q 028805 84 IKIQQLTEERKELLKGSYRDRHYNAGSILL 113 (203)
Q Consensus 84 ~~~~~~~~~rK~l~kg~~r~~H~~~Gsill 113 (203)
.+..++-+.|-||.|-..+++=.+.+..+.
T Consensus 10 ~~~~~lv~~~i~La~~E~~~~~~~~~~~~~ 39 (121)
T PF07332_consen 10 DDLSTLVRTRIELAKAELREKARRLGRGLA 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777766555555443
No 104
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=35.86 E-value=1.6e+02 Score=24.41 Aligned_cols=35 Identities=20% Similarity=0.006 Sum_probs=15.4
Q ss_pred HHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 028805 152 LAAALVPAMQKGSETARNLHIALNALNILLFIWQIP 187 (203)
Q Consensus 152 ~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~Qai 187 (203)
+.+. .|..-|++++...+=+.+.........+.+.
T Consensus 106 ~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T PF01040_consen 106 LLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAA 140 (257)
T ss_pred HHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhc
Confidence 4444 3334444555455444444334444444433
No 105
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=35.83 E-value=1.7e+02 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=32.5
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCC
Q 028805 82 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG 132 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G 132 (203)
.|.+|+..++++++ ..+-=..+|..+=+++++|++.|++.+..+-+
T Consensus 147 Le~ei~~~~~~~~~-----~~~v~~~~g~~aPa~GiiGtvlGLI~~l~~l~ 192 (282)
T TIGR03818 147 MEEEIETHHHELLK-----PAHALQKVADALPGFGIVAAVLGVVITMGSID 192 (282)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHhhCchhhHHHHHHHHHHHHHhcC
Confidence 44555555555553 22223467888889999999999999999885
No 106
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=35.50 E-value=1.7e+02 Score=27.79 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHH
Q 028805 108 AGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWA 151 (203)
Q Consensus 108 ~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l 151 (203)
....+++++++=.+.|+.+.+.+--..-...|...+..+.+.++
T Consensus 352 ~~~~ll~lv~lQi~LGi~tv~~~lP~~la~~H~~gA~lLl~~~~ 395 (403)
T PTZ00127 352 LLMALLGALTLQVLLGITTLLSQVPVHLAVAHQFGALVLLTTLL 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888887776633335778877766655544
No 107
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=35.02 E-value=49 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhhhhhh--------cCC-CCCcchhHHHHHHHHHHHHH
Q 028805 111 ILLGFGVLESVGGGVNTYL--------RAG-KLFPGPHLFAGAAITVLWAL 152 (203)
Q Consensus 111 ill~l~vlg~vgG~~~T~~--------~~G-~Lf~gpHl~aGL~~v~L~l~ 152 (203)
.++..++..++.|++.-.. ... ..+..-|.++|..+.+++++
T Consensus 8 ~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 8 LLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777333 222 24468899999999998876
No 108
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=34.67 E-value=4.2e+02 Score=25.35 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=45.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhh-h--------cC-CCC---CcchhHHHHHHHHHHHHHHHHhhHhhhcC---
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTY-L--------RA-GKL---FPGPHLFAGAAITVLWALAAALVPAMQKG--- 163 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~-~--------~~-G~L---f~gpHl~aGL~~v~L~l~Saal~p~i~kg--- 163 (203)
+.+|.=+-+||++..+...-+++..+.-. + ++ |.. +..-=+.+|+..+.+.++-.+.--.+.-.
T Consensus 117 ~~Wd~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~~~~~GA~~L~~KT~g~L 196 (379)
T PRK15003 117 NMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGEL 196 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 58899999999998776655555444333 0 11 221 23456788999998888877766555432
Q ss_pred ChhHHHHHH
Q 028805 164 SETARNLHI 172 (203)
Q Consensus 164 ~~~aR~lHi 172 (203)
+.++|+.-.
T Consensus 197 ~~rar~~a~ 205 (379)
T PRK15003 197 HLRTRATAQ 205 (379)
T ss_pred HHHHHHHHH
Confidence 445555444
No 109
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=34.49 E-value=1.6e+02 Score=25.51 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=24.5
Q ss_pred hhHhHHhHHHHHHHHHHHHhhhhhhhhhhcC
Q 028805 101 YRDRHYNAGSILLGFGVLESVGGGVNTYLRA 131 (203)
Q Consensus 101 ~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~ 131 (203)
.--++...++.+++--.+.+++|+.+...+.
T Consensus 54 q~Lrn~~~~~tffASTailli~g~~all~~~ 84 (216)
T PF04654_consen 54 QTLRNLIMSATFFASTAILLIGGLLALLGST 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3457889999999988888888887666664
No 110
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=34.38 E-value=1.1e+02 Score=26.25 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCC-cchhHHHHHHHHHHHHHHHHhhHhh
Q 028805 108 AGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALVPAM 160 (203)
Q Consensus 108 ~Gsill~l~vlg~vgG~~~T~~~~G~Lf-~gpHl~aGL~~v~L~l~Saal~p~i 160 (203)
+|++-=.+|++|+|.||+.++..-+.-. ..+-..+|=.-.+|+..++.+.-.|
T Consensus 125 i~~~APllGLLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALitTA~GL~VAI 178 (211)
T TIGR02797 125 IGATAPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAI 178 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566668999999999999998776444 3566666666666666555554433
No 111
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=33.35 E-value=2.5e+02 Score=22.49 Aligned_cols=92 Identities=9% Similarity=-0.134 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-----------CChhHHHHHHHHHHH
Q 028805 109 GSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-----------GSETARNLHIALNAL 177 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-----------g~~~aR~lHi~LN~l 177 (203)
..+++..+++..+...+.-|.-+.+ ..++--.+...++-+..++++..-.-.. ..+..|.+.+..+++
T Consensus 9 ~~~~l~~m~~~v~~~Vv~Ry~f~~~-~~w~eEla~~l~v~~~flGa~~~~~~~~Hi~Vd~l~~~lp~~~~~~l~~l~~l~ 87 (157)
T PRK09877 9 LAINIAVLSCIVFINIILRYGFQTS-ILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSL 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeehHHHhCCHHHHHHHHHHHHHH
Confidence 3445556666666666666644433 3345667777777777777666443221 133444466666766
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhcC
Q 028805 178 NILLFIWQIPTGIDIVFKVLEFTK 201 (203)
Q Consensus 178 lllLFl~QaiTG~~IVqk~l~~~~ 201 (203)
.++.++.-++.|++.+++-.+.++
T Consensus 88 ~~~f~~~~~~~~~~~~~~~~~~~s 111 (157)
T PRK09877 88 ILLLCGALAWGATLKTIQDWSDYS 111 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 666666667778888876555443
No 112
>COG3374 Predicted membrane protein [Function unknown]
Probab=33.15 E-value=2.9e+02 Score=24.47 Aligned_cols=95 Identities=23% Similarity=0.213 Sum_probs=55.9
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc--CChhHHHHHHHHHHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK--GSETARNLHIALNALNIL 180 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k--g~~~aR~lHi~LN~llll 180 (203)
.+|.-.|.+.+++++--.+-|.++=... -.-|..+-+++-.+--++..++|.+.. .+...+.+-+.+ ++..+
T Consensus 97 ~dl~~~gi~alflGl~~IvyG~~~y~~~-----mT~~Pla~~~lyil~GLagvlsp~l~ldr~~~~~~~l~v~~-~llii 170 (197)
T COG3374 97 YDLQVTGIFALFLGLYTIVYGVVIYNYG-----MTREPLAALALYILTGLAGVLSPTLALDREKGKAGVLIVEA-ALLII 170 (197)
T ss_pred cchhhhHHHHHHcchHheeehhhhhccc-----cccCHHHHHHHHHHHhHHHHHhHHHHHhhcCCeeehhHHHH-HHHHH
Confidence 5666677777777776666665543333 345667777777777788888887744 344455543222 22222
Q ss_pred HHHHHhhhhHH-HHHHHHhhcCCC
Q 028805 181 LFIWQIPTGID-IVFKVLEFTKWP 203 (203)
Q Consensus 181 LFl~QaiTG~~-IVqk~l~~~~~p 203 (203)
.-..-.+.|.+ +..-+.+|-+||
T Consensus 171 ~~~iA~~ig~~a~~~h~~~f~kw~ 194 (197)
T COG3374 171 AAVIALYIGATAAIGHLPGFGKWT 194 (197)
T ss_pred HHHHHHHHHHHHhHHhhhhhccCC
Confidence 33334455643 456677777775
No 113
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=32.81 E-value=2.5e+02 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCC-cchhHHHHHHHHHHHHHHHHhhH
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALVP 158 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf-~gpHl~aGL~~v~L~l~Saal~p 158 (203)
.+|++.=.++++|+|.||++++..-+.-. ..|-..++=+-.+|+...+.+.-
T Consensus 135 ti~~~aPllGLlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitTa~GL~v 187 (244)
T PRK10414 135 TIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVA 187 (244)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35666678999999999999998886433 46666666555555555554443
No 114
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=32.49 E-value=84 Score=19.98 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=16.0
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~ 128 (203)
..+.-|..+|.+.-.+.++-.+.|.+..+
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556666666655555555555555443
No 115
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=32.35 E-value=3.9e+02 Score=24.34 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=64.4
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC-----CcchhHHHHHHHHHHHHHHHHhhHhhhcC-------ChhH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL-----FPGPHLFAGAAITVLWALAAALVPAMQKG-------SETA 167 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L-----f~gpHl~aGL~~v~L~l~Saal~p~i~kg-------~~~a 167 (203)
.+-..|-.+|...+.+..+=.+.|...=+...++. .-..|-..|+..-.+.+.++.++- +.|. -...
T Consensus 121 NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl-~ek~~f~~~~~~s~~ 199 (245)
T KOG1619|consen 121 NFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGL-LEKLTFLCFGDLSTK 199 (245)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCccccc
Confidence 56689999999999999999999987666655553 357899999999999999888876 5442 2234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028805 168 RNLHIALNALNILLFIW 184 (203)
Q Consensus 168 R~lHi~LN~llllLFl~ 184 (203)
-+-+...|.+.+.+++.
T Consensus 200 ~~e~~l~n~~gv~~il~ 216 (245)
T KOG1619|consen 200 NPEGYLVNFLGVFIILF 216 (245)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56888889887766654
No 116
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=32.29 E-value=3.3e+02 Score=23.50 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=23.7
Q ss_pred HHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 149 LWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 149 L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
++.+...+.+.+- ++..|..=...-.+++++.+.+..||.
T Consensus 100 lvGl~~Ll~RR~~--~~~vr~~s~~~D~~~L~lLl~i~~tG~ 139 (222)
T PF02665_consen 100 LVGLLILLVRRLF--DPRVRAISTPSDYFVLLLLLAIVLTGL 139 (222)
T ss_dssp HHHHHHHHHHHHH--SHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3333344444443 455666655666778888888889985
No 117
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=31.98 E-value=2e+02 Score=25.86 Aligned_cols=72 Identities=15% Similarity=0.007 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCC-CcchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 028805 112 LLGFGVLESVGGGVNTYLRAGKL-FPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIW 184 (203)
Q Consensus 112 ll~l~vlg~vgG~~~T~~~~G~L-f~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~ 184 (203)
++.+-++-.+-|...|+...+-. ..--+...+.-.=.++.++...++.|. .-+..=.+|+.+...++.+|.+
T Consensus 128 ~lilLla~~~~Gl~~~~~~~~~~~~~~~~~~~~~w~~si~tl~~~~~~l~a-~v~~~fk~Hi~lg~~l~~~~PF 200 (228)
T COG2181 128 ALLLLLAQLLLGLYATPFSAQHADGFDYRELVSWWARSIVTLHGPASELVA-GVPLIFKVHIVLGLTLFALFPF 200 (228)
T ss_pred HHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHhcCcchHhhcC-CCcHHHHHHHHHHHHHHHHhhh
Confidence 34444555566777777765431 122344444444556666644455554 4778889999999999999876
No 118
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=31.87 E-value=2.4e+02 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=31.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHH
Q 028805 136 PGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHI 172 (203)
Q Consensus 136 ~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi 172 (203)
--|=...|+..++..++++.++|.+. +..+|..|-
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G--~~vf~l~~r 108 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLG--NQVFRLLNR 108 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHhH
Confidence 68999999999999999999999995 688888874
No 119
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.68 E-value=33 Score=23.60 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 028805 31 SLLVYTLWAGYLGW 44 (203)
Q Consensus 31 ~L~a~~lyA~yLG~ 44 (203)
..|+.++-.+++-.
T Consensus 26 ~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 26 IAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444433
No 120
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=31.45 E-value=68 Score=26.04 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhcCCh--hHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 028805 141 FAGAAITVLWALAAALVPAMQKGSE--TARNLHIALNALNILLFIWQIPTGIDIVF 194 (203)
Q Consensus 141 ~aGL~~v~L~l~Saal~p~i~kg~~--~aR~lHi~LN~llllLFl~QaiTG~~IVq 194 (203)
..|+.+.++.++...+.|.+++++. .-|..|-.+-.+.++.|..=.+.|.+-|+
T Consensus 82 ~~Gv~~~~~~i~~l~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~lG~~~~~ 137 (147)
T cd00290 82 LLGVLAMAASILSLFLVPFLENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVE 137 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcHHHHHhHHHHHHHHHHHHHcCCCcc
Confidence 6788888888888899999987532 34667766655555556555555654443
No 121
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.26 E-value=1.1e+02 Score=22.58 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=8.6
Q ss_pred hHHHHHhhHHHHHHHh
Q 028805 82 VEIKIQQLTEERKELL 97 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~ 97 (203)
.+++++++.+|.+.|.
T Consensus 47 l~~~~~~l~~e~~~L~ 62 (97)
T PF04999_consen 47 LEKEIDQLQEENERLR 62 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666655443
No 122
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=31.14 E-value=3.5e+02 Score=23.36 Aligned_cols=24 Identities=13% Similarity=-0.124 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 166 TARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 166 ~aR~lHi~LN~llllLFl~QaiTG 189 (203)
.+|.+|-..-.+++++.+.+.+--
T Consensus 179 ~~~~~H~~~~~~l~~~v~~Hi~~~ 202 (235)
T PRK10171 179 DIHSWHRLGMWLIGAFVIGHVYMA 202 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899988888888888877653
No 123
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=31.12 E-value=3.1e+02 Score=22.90 Aligned_cols=52 Identities=13% Similarity=-0.194 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhhhhcCCC------CC-cchhHHHHHHHHHHHHHHHHh
Q 028805 105 HYNAGSILLGFGVLESVGGGVNTYLRAGK------LF-PGPHLFAGAAITVLWALAAAL 156 (203)
Q Consensus 105 H~~~Gsill~l~vlg~vgG~~~T~~~~G~------Lf-~gpHl~aGL~~v~L~l~Saal 156 (203)
...+|..+....-....+++..+|..... .. ..++...+..-|.+++.|..+
T Consensus 8 ~~~~G~w~fi~sE~~~F~~l~~ay~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~ 66 (186)
T cd02863 8 KKILGFWIYLMSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFT 66 (186)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccccccchHHHHHHHHHHHHHHH
Confidence 34577777777767777777777743321 11 235555666777777776444
No 124
>PLN00012 chlorophyll synthetase; Provisional
Probab=30.39 E-value=1.1e+02 Score=28.80 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.4
Q ss_pred hhhhHhHHhH
Q 028805 99 GSYRDRHYNA 108 (203)
Q Consensus 99 g~~r~~H~~~ 108 (203)
|....++...
T Consensus 163 G~Is~~~al~ 172 (375)
T PLN00012 163 GAISENEVIT 172 (375)
T ss_pred CccCHHHHHH
Confidence 3444444433
No 125
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=29.56 E-value=3e+02 Score=27.12 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=34.5
Q ss_pred hcCCCCCcch--hHHHHHHH-HHHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 028805 129 LRAGKLFPGP--HLFAGAAI-TVLWALAAALVPAMQKGSETARNLHIALNALNILLFIW 184 (203)
Q Consensus 129 ~~~G~Lf~gp--Hl~aGL~~-v~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~ 184 (203)
...|+...+. =+..|+++ +++++++......+.|.+.|++.+=....+++++.-+|
T Consensus 319 a~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ 377 (571)
T PRK00293 319 AQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVF 377 (571)
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHH
Confidence 4445544322 24556666 66777777665555556778787777777776665555
No 126
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=2.3e+02 Score=26.29 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=48.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHh
Q 028805 18 GRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELL 97 (203)
Q Consensus 18 g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~rK~l~ 97 (203)
-..+.++|.+....+|.+.++. ..+-+|+.++
T Consensus 226 ~~~vq~~Hr~~a~~~~~~~l~~--~~~~~r~~~~---------------------------------------------- 257 (323)
T COG1612 226 PETVQFVHRLGAYLVFVAALLL--LVAALRRAPL---------------------------------------------- 257 (323)
T ss_pred chhhhhhHHHHHHHHHHHHHHH--HHHHHhcccc----------------------------------------------
Confidence 4568899999999999999998 5666664421
Q ss_pred hhhhhHhHHh-HHHHHHHHHHHHhhhhhhhhhhcCCCCC-cchhHH
Q 028805 98 KGSYRDRHYN-AGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLF 141 (203)
Q Consensus 98 kg~~r~~H~~-~Gsill~l~vlg~vgG~~~T~~~~G~Lf-~gpHl~ 141 (203)
.+|.+ .+..++.++.+=+..|+.+-+... ++. -..|-.
T Consensus 258 -----~~~~~~~~~~l~~lv~~Q~~~Gi~tv~~~v-pl~~a~~H~~ 297 (323)
T COG1612 258 -----TRAARTRAVVLLALVTLQAALGILTVLLGV-PLALALAHQA 297 (323)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHH
Confidence 23444 445566777777777888777766 444 567766
No 127
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=29.00 E-value=4.1e+02 Score=23.58 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 164 SETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
..++|.+|-.+-.++++.++.+++-++
T Consensus 216 ~~~~~~iH~~~a~lli~fiivHIYl~~ 242 (261)
T PRK15006 216 RYWLLQLHFALAFISLFFIFGHLYLCT 242 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 128
>PRK02943 SecA regulator SecM; Provisional
Probab=28.72 E-value=34 Score=29.39 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.6
Q ss_pred hhhhhhhhcCCCCCcchhHHHHHHHHHHHHH
Q 028805 122 GGGVNTYLRAGKLFPGPHLFAGAAITVLWAL 152 (203)
Q Consensus 122 gG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~ 152 (203)
.|++|-|-.+|+=...||++.|++...|=+=
T Consensus 1 ~gILnrWRQfGRRYFWpHLLLGMVAAslGlP 31 (167)
T PRK02943 1 IGILNRWRQFGRRYFWPHLLLGMVAASLGLP 31 (167)
T ss_pred CcHHHHHHHhchhhccHHHHHHHHHHhcCCc
Confidence 4889999999999999999999877655443
No 129
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=27.67 E-value=4.2e+02 Score=25.90 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCC--------CC---cchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHHHHHH
Q 028805 108 AGSILLGFGVLESVGGGVNTYLRAGK--------LF---PGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNA 176 (203)
Q Consensus 108 ~Gsill~l~vlg~vgG~~~T~~~~G~--------Lf---~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi~LN~ 176 (203)
+|.+.=.+.+.+.++|+..+..-... +| .+.-...++.++...++..++..-++||=++.=++.+.+-.
T Consensus 175 ~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~ 254 (485)
T PF02028_consen 175 LGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAF 254 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56666677777777776666543322 22 35566777777777777777778888876667677777766
Q ss_pred HHHHHHHHHhh
Q 028805 177 LNILLFIWQIP 187 (203)
Q Consensus 177 llllLFl~Qai 187 (203)
++++..+.-..
T Consensus 255 ~ll~~vl~~Gp 265 (485)
T PF02028_consen 255 ALLLFVLLFGP 265 (485)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 66655554444
No 130
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=27.54 E-value=5.3e+02 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=23.9
Q ss_pred HhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 028805 155 ALVPAMQKGSETARNLHIALNALNILLFIWQIP 187 (203)
Q Consensus 155 al~p~i~kg~~~aR~lHi~LN~llllLFl~Qai 187 (203)
.+-..+.++...+|.+....-++.+.+++++..
T Consensus 282 iid~~l~~~~~~~~~i~~~~~~~a~~~v~~~~~ 314 (344)
T PF04123_consen 282 IIDEYLRRDFRLWRYINAPFFVIAIGLVLYGFS 314 (344)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666899999988888888888754
No 131
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.40 E-value=49 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhe
Q 028805 23 LVHPIVMGSLLVYTLWAGYLGWQWR 47 (203)
Q Consensus 23 ~~HP~~M~~L~a~~lyA~yLG~q~r 47 (203)
+|==.+|+++.+..+...|+-++.|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333456655555555555554333
No 132
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=27.05 E-value=3.6e+02 Score=22.27 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q 028805 174 LNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 174 LN~llllLFl~QaiTG~~I 192 (203)
.-.++.+.|..+..+|+.+
T Consensus 145 ~~p~~~~~~~~~~pa~l~l 163 (181)
T TIGR03592 145 IMPLMFLFFFLSFPAGLVL 163 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455666677777654
No 133
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=27.04 E-value=1.2e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=22.0
Q ss_pred hhHhHHhHHH-HHHHHHHHHhhhhhhhhh
Q 028805 101 YRDRHYNAGS-ILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 101 ~r~~H~~~Gs-ill~l~vlg~vgG~~~T~ 128 (203)
+-.|-..+|. +|.++++...++|.++.|
T Consensus 39 ~ttkg~w~gig~l~~~wi~vrfiGp~~gw 67 (68)
T PF10999_consen 39 LTTKGPWIGIGILVLIWIIVRFIGPAFGW 67 (68)
T ss_pred HhhcccchhHHHHHHHHHHHHhhcchhee
Confidence 3356778898 888889999999988765
No 134
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=27.00 E-value=4.5e+02 Score=26.78 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred hhhhhhhcCCCCCcchhHHH-----HHHHHHHHHHHHHh--hHhhhc---------CChhHHHHHHHHHHHHHHHHHHHh
Q 028805 123 GGVNTYLRAGKLFPGPHLFA-----GAAITVLWALAAAL--VPAMQK---------GSETARNLHIALNALNILLFIWQI 186 (203)
Q Consensus 123 G~~~T~~~~G~Lf~gpHl~a-----GL~~v~L~l~Saal--~p~i~k---------g~~~aR~lHi~LN~llllLFl~Qa 186 (203)
-+.+|+.-+.-+..|.|.++ |..+.+++++.... .-.+.| .+..-|.-=..+|.++++....++
T Consensus 286 ~~~gtflvRsg~l~svHsfa~d~~~G~~lL~~l~~~~~~~l~l~~~r~~~~~~~~~~~~~SRE~~ll~nn~ll~~~~~~V 365 (628)
T TIGR03145 286 SLLGTFIVRSGVLTSVHAFAVDPTRGIALLLLFFLLTASALTLFALKANLRQSAVRFGLFSKEGALLLGNVLLTVATVSV 365 (628)
T ss_pred HHHHHHhhhccCcCCccccccCCCchHHHHHHHHHHHHHHHHHHHHhccccccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 45566665655668899987 55555443332221 122221 134556666888999999999999
Q ss_pred hhh--HHHHHHHHh
Q 028805 187 PTG--IDIVFKVLE 198 (203)
Q Consensus 187 iTG--~~IVqk~l~ 198 (203)
+.| ++++-+.+.
T Consensus 366 l~GT~~P~i~e~~~ 379 (628)
T TIGR03145 366 LLGTFYPMIFQALG 379 (628)
T ss_pred HHHHHHHHHHHHhC
Confidence 988 556655554
No 135
>COG5395 Predicted membrane protein [Function unknown]
Probab=26.76 E-value=1.8e+02 Score=23.99 Aligned_cols=53 Identities=17% Similarity=0.007 Sum_probs=44.3
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHH
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAA 155 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saa 155 (203)
..|..+|-+-+++|..-++.+...--+|----|...|++.++.+.+|.=.-++
T Consensus 38 ~lHr~LGrvWv~lM~atavSs~FI~ei~l~g~FSpIHLLSi~~i~g~~~aV~a 90 (131)
T COG5395 38 TLHRLLGRVWVALMGATAVSSLFIHEINLHGGFSPIHLLSIFTIIGLPRAVYA 90 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccCcChHHHHHHHHHHhhHHHHHH
Confidence 78999999999999999999988777774445778899999999988765444
No 136
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.71 E-value=54 Score=25.49 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhh-heeeeccccchHHHhhhc
Q 028805 31 SLLVYTLWAGYLGWQ-WRRVRTIQTDINELKKQV 63 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q-~rr~rt~~~~i~~~k~~~ 63 (203)
+++++..|..+.|=+ +++.+...+++.++|+++
T Consensus 10 ~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~ 43 (105)
T PRK00888 10 ALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTN 43 (105)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 444455554444322 223445566666655554
No 137
>PRK01622 OxaA-like protein precursor; Validated
Probab=26.65 E-value=4.5e+02 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhHHH
Q 028805 176 ALNILLFIWQIPTGIDI 192 (203)
Q Consensus 176 ~llllLFl~QaiTG~~I 192 (203)
.++++.|..+..+|+.+
T Consensus 215 pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 215 PAMILFMSFAAPSALVL 231 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777887754
No 138
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=26.55 E-value=3.8e+02 Score=22.46 Aligned_cols=87 Identities=14% Similarity=-0.062 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCC----CC-c---chhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHHHHHHHHH
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGK----LF-P---GPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALN 178 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~----Lf-~---gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lHi~LN~ll 178 (203)
+.|..+..+.-....++...+|...-. .+ . ..++..|..-|.+++.|..+...-.+ .-+.++-....+.+.
T Consensus 11 ~~g~w~fi~sE~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~l~~~~lnT~vLl~SS~~~~~A~~-a~~~~~~~~~~~~L~ 89 (190)
T TIGR02897 11 ILGFWIFLGAEIALFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGIAIY-EMRKENQKLMMFWMI 89 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHH
Confidence 456666555445555555565543321 11 1 23466777778777777544333211 011112233444555
Q ss_pred HHHHHHHhhhhHHHHH
Q 028805 179 ILLFIWQIPTGIDIVF 194 (203)
Q Consensus 179 llLFl~QaiTG~~IVq 194 (203)
+.+.+.-++.+.|+..
T Consensus 90 ~tl~lG~~Fl~~q~~E 105 (190)
T TIGR02897 90 ITLLLGAGFVGFEIYE 105 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 139
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=26.41 E-value=3.4e+02 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.9
Q ss_pred hhhHHHH-HHHHHHHHHHHHhhhheee
Q 028805 24 VHPIVMG-SLLVYTLWAGYLGWQWRRV 49 (203)
Q Consensus 24 ~HP~~M~-~L~a~~lyA~yLG~q~rr~ 49 (203)
.+|..+. .-++-+.|-.|+||+..|.
T Consensus 49 ~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 49 KSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3576555 7788889999999987764
No 140
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=26.33 E-value=53 Score=25.71 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCChhHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHH
Q 028805 78 APSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLG 114 (203)
Q Consensus 78 ~~~~~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~ 114 (203)
|.|-++.||++|.|++|++.+. .--++|.+.+=
T Consensus 3 ~~s~I~~eIekLqe~lk~~e~k----eaERigr~AlK 35 (92)
T PF07820_consen 3 SSSKIREEIEKLQEQLKQAETK----EAERIGRIALK 35 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4567899999999999997763 33456666553
No 141
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.31 E-value=3.2e+02 Score=21.43 Aligned_cols=41 Identities=5% Similarity=-0.288 Sum_probs=18.8
Q ss_pred hhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhh
Q 028805 121 VGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQ 161 (203)
Q Consensus 121 vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~ 161 (203)
++|.+.-++-......++-+..-+.++++.+--...--.|.
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444344456655555555555544443333343
No 142
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=26.23 E-value=4.3e+02 Score=22.82 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHH--HHHHHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHH
Q 028805 111 ILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGA--AITVLWALAAALVPAMQKGSETARNLHIALNALNILLFI 183 (203)
Q Consensus 111 ill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL--~~v~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl 183 (203)
+.+.+.+.-.+-|++.++.+.... ++.+..-+ -+-.|+.++ -.++.-..-++.=.+|+.+..++++.+.
T Consensus 126 ~~L~lLl~i~~tG~~~~~~~~~~~--~~~~~~~v~~w~~sL~tf~--p~~~~~~~~~~~~~~H~~l~~~l~a~iP 196 (222)
T PF02665_consen 126 FVLLLLLAIVLTGLLMEGVRIAGT--DYWYRETVGPWLRSLFTFN--PDPELMTPVPLLFWLHMLLAFVLFAYIP 196 (222)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGCGT--TSHHHHHHHHHHHHHHTT---TTGGGGTT--HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHHhcC--CchHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555667888888887664 22222211 122222221 1122212356666799999998888764
No 143
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=26.03 E-value=1.5e+02 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhee
Q 028805 25 HPIVMGSLLVYTLWAGYLGWQWRR 48 (203)
Q Consensus 25 HP~~M~~L~a~~lyA~yLG~q~rr 48 (203)
..=+.+..++.=+|+.|..|....
T Consensus 113 s~~~w~l~LvIP~ya~Ykl~~~i~ 136 (170)
T PF05620_consen 113 SNKFWWLYLVIPGYAIYKLWGLIK 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444666777888998888663
No 144
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.76 E-value=2.9e+02 Score=21.23 Aligned_cols=40 Identities=28% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 028805 148 VLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIP 187 (203)
Q Consensus 148 ~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~Qai 187 (203)
+++++..+.....+++..|.|.+==.+-|.++.+|+..+.
T Consensus 25 a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L 64 (100)
T PF05106_consen 25 ALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSLL 64 (100)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777788888888888888888888876654
No 145
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=25.63 E-value=4.2e+02 Score=25.32 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHhhhhHHHH--HHHHhhcC
Q 028805 180 LLFIWQIPTGIDIV--FKVLEFTK 201 (203)
Q Consensus 180 lLFl~QaiTG~~IV--qk~l~~~~ 201 (203)
+....|.+-++|-| +|++.+.+
T Consensus 180 lIiiaqiivaiQ~v~Eek~l~~~n 203 (372)
T KOG3912|consen 180 LIIIAQIIVAIQMVCEEKQLKKSN 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34467888887766 57777654
No 146
>COG4329 Predicted membrane protein [Function unknown]
Probab=25.26 E-value=42 Score=28.38 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.6
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhh
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~ 128 (203)
..|..|+.+|+++++.+++-.++|.+|--
T Consensus 88 ~~wSa~~~~G~ll~GaGlFnl~eGtinHq 116 (160)
T COG4329 88 FQWSAKYWWGGLLLGAGLFNLYEGTINHQ 116 (160)
T ss_pred ceeehhhhhhhhhhcccchheeehhhhhh
Confidence 56788999999999999999999988753
No 147
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=24.98 E-value=86 Score=21.05 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=14.7
Q ss_pred hhhhHhHHhH-HHHHHHHHHHHhhhhhhhhh
Q 028805 99 GSYRDRHYNA-GSILLGFGVLESVGGGVNTY 128 (203)
Q Consensus 99 g~~r~~H~~~-Gsill~l~vlg~vgG~~~T~ 128 (203)
|.+-|+|+.. -..++.+.++|.+.|+.+.|
T Consensus 21 G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~ 51 (55)
T PF09527_consen 21 GYWLDKWFGTSPWFTLIGLLLGIAAGFYNVY 51 (55)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 23334455555555555544
No 148
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=24.92 E-value=3e+02 Score=20.53 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 028805 169 NLHIALNALNILLFIW 184 (203)
Q Consensus 169 ~lHi~LN~llllLFl~ 184 (203)
..|..+|..++.+|+.
T Consensus 41 ~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 41 WLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999999887
No 149
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.82 E-value=61 Score=28.45 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred hhhhHHHH--HHHHHHHHHHHHhhhheeeeccccch
Q 028805 23 LVHPIVMG--SLLVYTLWAGYLGWQWRRVRTIQTDI 56 (203)
Q Consensus 23 ~~HP~~M~--~L~a~~lyA~yLG~q~rr~rt~~~~i 56 (203)
|+==+.++ .|++..+|++|.-||+|.-+..+++.
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl 137 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRL 137 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhh
Confidence 33345677 88999999999999999876655443
No 150
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.66 E-value=1.9e+02 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhheeee
Q 028805 31 SLLVYTLWAGYLGWQWRRVR 50 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q~rr~r 50 (203)
+..+..++.+|+.||.++.+
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666665543
No 151
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.64 E-value=2.8e+02 Score=26.01 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=32.3
Q ss_pred hhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc
Q 028805 99 GSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK 162 (203)
Q Consensus 99 g~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k 162 (203)
++.|.+|.+.=++=+.|..+ --++.-.|.++|-| +.+..+++.++.+.-.+..
T Consensus 221 aklrS~hN~ylTlPvLf~Mi---------SnHyp~~y~~~~nW--lil~li~~~g~~IRhfFn~ 273 (300)
T PF06181_consen 221 AKLRSRHNNYLTLPVLFLMI---------SNHYPMTYGHPYNW--LILALIMLAGALIRHFFNL 273 (300)
T ss_pred HHHHhhhcceeHHHHHHHHH---------hccCccccccchhH--HHHHHHHHHHHHHHHHHHH
Confidence 58999999987775544321 12555556677777 4455555555555555544
No 152
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.55 E-value=1.1e+02 Score=20.12 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=20.5
Q ss_pred hhhhhhHhHHhHHHHHHHHHHHHhhhhhhhh
Q 028805 97 LKGSYRDRHYNAGSILLGFGVLESVGGGVNT 127 (203)
Q Consensus 97 ~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T 127 (203)
.+...|+|=.-+|.+++.+.++.++.|...+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~ 39 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFIS 39 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 3335556667777777777777777775543
No 153
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=24.33 E-value=1.7e+02 Score=24.27 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHH
Q 028805 86 IQQLTEERKELLKGSYRDRHYNAGSILLGFGVLE 119 (203)
Q Consensus 86 ~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg 119 (203)
|.+..+.+.|.+-|+ --||-+|.+...+..+.
T Consensus 49 i~~~~~v~~E~~~GW--~~HY~iGi~fa~~~~~l 80 (150)
T PF11158_consen 49 IAQAPPVPGERILGW--LAHYAIGIAFAVLYALL 80 (150)
T ss_pred hhhCCCCcchHHHHH--HHHHHHHHHHHHHHHHH
Confidence 344445566767666 78999998876655544
No 154
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=24.25 E-value=1.4e+02 Score=23.71 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHH
Q 028805 105 HYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWA 151 (203)
Q Consensus 105 H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l 151 (203)
=.-++..|+.+++...+.|++....+-+ ....|.+ ++.+++++.
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~~i~--~~~~~~~-~llilG~L~ 86 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFGHID--GDRDRGW-ALLILGILC 86 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCcccc-hHHHHHHHH
Confidence 3445666666677777777766666543 3455655 444444443
No 155
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=24.23 E-value=4.2e+02 Score=22.05 Aligned_cols=94 Identities=17% Similarity=0.050 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc-----------CChhHHHHHHHH
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-----------GSETARNLHIAL 174 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k-----------g~~~aR~lHi~L 174 (203)
-..+.+++..++...+.+.+.=|.-+.+..|+-= .+=...+-++.++++.+-.-+. .+...|.+.+..
T Consensus 17 ~~v~~~ll~~m~~iv~~~V~~Ry~~~~~~~WseE-lar~lfvwl~flGa~~~~r~~~Hi~vd~l~~~lp~~~r~~l~~~~ 95 (177)
T COG3090 17 EAVAAALLAAMVLIVFLQVFTRYVFNSPISWSEE-LARLLFVWLIFLGAAYGVREGGHIGVDVLVNLLPPRARKILRIIA 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHH-HHHHHHHHHHHHHHHHHhccCCeeeehHHHHhCCHHHHHHHHHHH
Confidence 3456666666666666666666666655554322 2223333333444443332221 255667799999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhc
Q 028805 175 NALNILLFIWQIPTGIDIVFKVLEFT 200 (203)
Q Consensus 175 N~llllLFl~QaiTG~~IVqk~l~~~ 200 (203)
|++.+..++.=++.|++.++.-++.+
T Consensus 96 ~~l~l~f~~~l~~~~~~~~~~~~~~~ 121 (177)
T COG3090 96 DLLILVFFLLLIWGGWKLAAINWSQG 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999887543
No 156
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.09 E-value=43 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=13.0
Q ss_pred HhhhheeeeccccchHHHhhhcC
Q 028805 42 LGWQWRRVRTIQTDINELKKQVK 64 (203)
Q Consensus 42 LG~q~rr~rt~~~~i~~~k~~~~ 64 (203)
+.....+.....+++++|++++.
T Consensus 12 ~~~~~~~~~~~~~ei~~l~~~i~ 34 (80)
T PF04977_consen 12 GISGYSRYYQLNQEIAELQKEIE 34 (80)
T ss_pred hcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444455667777766663
No 157
>MTH00191 CYTB cytochrome b; Provisional
Probab=23.65 E-value=3.4e+02 Score=25.40 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhh-------------------cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYL-------------------RAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~-------------------~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
++.|+++....+.-.+-|+..+.. +.|.+..+-|.++.-.|..++.+=..=+- .+ ++-+
T Consensus 28 ~~~G~l~~~~~~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~-~~-gsy~ 105 (365)
T MTH00191 28 WNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGL-YY-GSYL 105 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-heec
Confidence 689999988888777888765432 33445568899888887777665332222 21 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGID 191 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~ 191 (203)
.++ -=..+++++++....++||--
T Consensus 106 ~~~-~W~~G~~l~~l~~~~~f~Gy~ 129 (365)
T MTH00191 106 NKE-TWNVGVILLILSMATAFLGYV 129 (365)
T ss_pred cch-hhHhhHHHHHHHHHHHHhhcc
Confidence 111 356778888888889998853
No 158
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=23.64 E-value=3.1e+02 Score=20.37 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc--CCCCCcchh
Q 028805 109 GSILLGFGVLESVGGGVNTYLR--AGKLFPGPH 139 (203)
Q Consensus 109 Gsill~l~vlg~vgG~~~T~~~--~G~Lf~gpH 139 (203)
..+....+....+.|.++++.+ .+.+|.+++
T Consensus 8 s~~a~~av~~l~~TG~~~a~~~~~~~~l~~t~y 40 (105)
T PF05425_consen 8 SWIAWAAVAVLVVTGLVMAWLRLGFDALFTTPY 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhhccChh
Confidence 3344444556667788888877 556665553
No 159
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=23.60 E-value=5.5e+02 Score=23.19 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=70.2
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhhhheeeeccccchHHHhhh--cCCCCCCCCCCCCCCCCChhHHHHHhhHH
Q 028805 14 GILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ--VKPTPVTPDGAPAETAPSPVEIKIQQLTE 91 (203)
Q Consensus 14 ~~~~g~~~~~~HP~~M~~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 91 (203)
|++.|++.+. .|.++..+.+|+.--.-+..-+|+-.+--.||-.+ +.... +| .+. .+|++--+
T Consensus 39 ~ll~g~~~~~----~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~~qr~---~~----~~~----S~i~ARv~ 103 (237)
T PF13748_consen 39 ALLNGDVWQA----LMYAALVLLMWAIGAARRIYDTRVFSRIYAELAVPVILSQRQ---QG----LSV----STIAARVA 103 (237)
T ss_pred HHHcccHHHH----HHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHHHHHH---hC----CCh----hHHHHHHH
Confidence 5777776544 55566666666666666666666666554443332 11100 00 111 23333334
Q ss_pred HHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChhHHHHH
Q 028805 92 ERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLH 171 (203)
Q Consensus 92 ~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~aR~lH 171 (203)
-=+|++. |=..|.=. +..-+...+|+++.-. .-|.|.|+..++++++.+.+.|...+++. ++|
T Consensus 104 lsRE~Vd--FfE~~lP~----lits~vsivga~vmLl--------~~e~~~g~~~l~~l~~~~~i~~~f~~~~~---~L~ 166 (237)
T PF13748_consen 104 LSREFVD--FFEQHLPT----LITSVVSIVGAAVMLL--------VFEFWLGLACLLILALFLLILPRFARRNY---RLY 166 (237)
T ss_pred HHHHHHH--HHHHHhHH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4455553 44666521 2222333343333322 24789999999999999999998876432 344
Q ss_pred HHHH
Q 028805 172 IALN 175 (203)
Q Consensus 172 i~LN 175 (203)
.-+|
T Consensus 167 ~~LN 170 (237)
T PF13748_consen 167 RRLN 170 (237)
T ss_pred HHHh
Confidence 4444
No 160
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=23.54 E-value=4.7e+02 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.085 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 166 TARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 166 ~aR~lHi~LN~llllLFl~QaiTG 189 (203)
+++.+|...-.++++.++++.+-+
T Consensus 150 ~a~~iH~~~a~l~~~fiivHiY~a 173 (217)
T PRK10179 150 YSLLIHAAAGIILIHAILIHMYMA 173 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889888888888888888765
No 161
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=23.22 E-value=4.6e+02 Score=22.12 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhheeee
Q 028805 31 SLLVYTLWAGYLGWQWRRVR 50 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q~rr~r 50 (203)
.-++.+.|=.|+|||--|.+
T Consensus 75 lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 75 LKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44566788999999955553
No 162
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=22.82 E-value=4.6e+02 Score=22.52 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCC
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAG 132 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G 132 (203)
..+|++-=.+|++|+|.|++.++..-+
T Consensus 123 atI~s~aP~lGL~GTV~GIm~aF~~i~ 149 (216)
T COG0811 123 ATIGSIAPFLGLLGTVWGIMPAFIGIG 149 (216)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 346677778999999999999999887
No 163
>PLN02776 prenyltransferase
Probab=22.67 E-value=3e+02 Score=25.83 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=34.3
Q ss_pred hhhcCCCCCcchhHHHHHHH-HHHHHHHHHhhHhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028805 127 TYLRAGKLFPGPHLFAGAAI-TVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKV 196 (203)
Q Consensus 127 T~~~~G~Lf~gpHl~aGL~~-v~L~l~Saal~p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~~IVqk~ 196 (203)
.|...++..+.+|...+... ++-++.-++....+. ...=++-+++|+||..=+|++.-++
T Consensus 115 vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~----------~~~~~Lf~~~~~Wq~pHf~~la~~~ 175 (341)
T PLN02776 115 VYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLD----------AGAMVLAAALYFWQMPHFMALAYMC 175 (341)
T ss_pred HHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445567886666544 333333333333332 1222567788999998888876544
No 164
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.28 E-value=2.4e+02 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHH-HHHHHHhhhheee
Q 028805 23 LVHPIVMGSLLVYT-LWAGYLGWQWRRV 49 (203)
Q Consensus 23 ~~HP~~M~~L~a~~-lyA~yLG~q~rr~ 49 (203)
+.|+.....++++. ++..|+..+++..
T Consensus 29 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 56 (199)
T PF10112_consen 29 FDHSFLLSLLIGAVAFAVVYLFGKRRQR 56 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34555555444333 3355555555544
No 165
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=22.23 E-value=2.1e+02 Score=22.65 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=21.7
Q ss_pred CCcchhHHHHHHHHH------HHHHHHHhhHhhhcCChhHHHHHH
Q 028805 134 LFPGPHLFAGAAITV------LWALAAALVPAMQKGSETARNLHI 172 (203)
Q Consensus 134 Lf~gpHl~aGL~~v~------L~l~Saal~p~i~kg~~~aR~lHi 172 (203)
+|+..|+..++++.+ |+++.+.....|+- |...|++|.
T Consensus 53 lfg~~~~PLilvil~s~v~G~Li~~~~~~~Ri~~l-rr~~krlr~ 96 (98)
T COG5416 53 LFGQWELPLILVILGAAVVGALIAMFAGIARILQL-RREVKRLRA 96 (98)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhh
Confidence 567888888776543 44444444444443 455666553
No 166
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=21.74 E-value=3.3e+02 Score=22.76 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=37.3
Q ss_pred hhHHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC-CcchhHHHHHHHHHHH
Q 028805 81 PVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL-FPGPHLFAGAAITVLW 150 (203)
Q Consensus 81 ~~~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L-f~gpHl~aGL~~v~L~ 150 (203)
+.+++++.+.++|+++-+.-.+..+..+ ...+++++.-...=+..||+.++=- -..-=+++|.+.+.+.
T Consensus 68 ~~~~el~~le~~k~~id~~A~~~~~~~~-w~gl~~l~~q~~~l~rLTf~e~sWDvMEPVTYfv~~~~~i~~ 137 (180)
T PF04678_consen 68 ELRQELAPLEKIKQEIDEKAEKRARRLL-WGGLALLVVQFGILARLTFWEYSWDVMEPVTYFVGYGTSILG 137 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHhHHHHHHH
Confidence 5677888888888887665444322222 2223333333333345677655432 2466677776655533
No 167
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.63 E-value=77 Score=24.40 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhheeeeccccchHHHhh
Q 028805 31 SLLVYTLWAGYLGWQWRRVRTIQTDINELKK 61 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~ 61 (203)
.+.+.++.+.++||-+.+...+..++..|.+
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~ 37 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAKKQNAKLQK 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788899999999999888877665544
No 168
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.57 E-value=2.6e+02 Score=22.69 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhhh--hhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhc
Q 028805 113 LGFGVLESVGGGVN--TYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK 162 (203)
Q Consensus 113 l~l~vlg~vgG~~~--T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~k 162 (203)
+...+.+++.|... +..++|.-+...-.+.+..+..+-++-..+.-++.+
T Consensus 2 v~~~~~~a~~~~~l~~~~~~~g~~lp~~p~~~~~~l~~la~~~~~~a~~vr~ 53 (138)
T PF11377_consen 2 VAAAVVGAVAGWLLLQLLESYGGSLPPIPWTAGVTLLVLAAVELWLAWQVRR 53 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777 788887777777788888877777777777666654
No 169
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=21.39 E-value=4.3e+02 Score=21.14 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred hhHHHH-HHHHHHHHHHHHhhhheeee
Q 028805 25 HPIVMG-SLLVYTLWAGYLGWQWRRVR 50 (203)
Q Consensus 25 HP~~M~-~L~a~~lyA~yLG~q~rr~r 50 (203)
+|.++. .-++.++|-.|+||+.-|..
T Consensus 55 ~~~~~~~l~~~G~~~L~~lg~~~~~~~ 81 (191)
T PF01810_consen 55 SPWLFMILKLLGALYLLYLGYKLLRSK 81 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455544 66778889999999888663
No 170
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=21.20 E-value=4.2e+02 Score=20.89 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=24.9
Q ss_pred HHHhhhhhhHhHHhHHHHHHHHHHHHhhhhhhhhhh
Q 028805 94 KELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYL 129 (203)
Q Consensus 94 K~l~kg~~r~~H~~~Gsill~l~vlg~vgG~~~T~~ 129 (203)
.+.+..-.++++.-+.+++++-.+...+.|...++.
T Consensus 42 a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 42 ARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555667778888887777777777777766
No 171
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.10 E-value=84 Score=24.69 Aligned_cols=43 Identities=16% Similarity=-0.045 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-hcCCCCCcchhHHHHHHHHHHH
Q 028805 108 AGSILLGFGVLESVGGGVNTY-LRAGKLFPGPHLFAGAAITVLW 150 (203)
Q Consensus 108 ~Gsill~l~vlg~vgG~~~T~-~~~G~Lf~gpHl~aGL~~v~L~ 150 (203)
+|..++.-.++|+..|...=- +..+..|+-.=+..|+++-..-
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n 91 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLN 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 344555666777777776543 3334455666677776654443
No 172
>MTH00119 CYTB cytochrome b; Provisional
Probab=21.05 E-value=4.4e+02 Score=24.79 Aligned_cols=83 Identities=17% Similarity=0.050 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhh-------------------cCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYL-------------------RAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~-------------------~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
++.|+++....+.-.+-|+..+.. ++|.+..+-|.++.=.+..++.+=..=+-.. ++-.
T Consensus 32 ~~~G~ll~~~~~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~--gsy~ 109 (380)
T MTH00119 32 WNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYY--GSYL 109 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ceec
Confidence 689999888777777778765432 3344556889988877777766532222111 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGID 191 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~ 191 (203)
|..-=..+++++++....++||--
T Consensus 110 -~~~~W~~Gv~l~~l~~~~~f~Gy~ 133 (380)
T MTH00119 110 -YKETWNTGVILLLLLMATAFVGYV 133 (380)
T ss_pred -ccchhhhhhHHHHHHHHHHHHhcc
Confidence 223346677778888888888843
No 173
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=21.03 E-value=4.6e+02 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=20.6
Q ss_pred HhHHhHHHHHHHHHHHHhhhhhhhhhhcC
Q 028805 103 DRHYNAGSILLGFGVLESVGGGVNTYLRA 131 (203)
Q Consensus 103 ~~H~~~Gsill~l~vlg~vgG~~~T~~~~ 131 (203)
+.|.++|..+..+.=....+++..+|...
T Consensus 6 ~~~~~~g~~~fi~se~~~F~~l~~~y~~~ 34 (183)
T cd00386 6 RSGGRLGMWLFILSEVMLFGSFFWAYFHS 34 (183)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888776666777777777543
No 174
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.87 E-value=6.3e+02 Score=22.85 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhh-cCCCCCcchhHHHHH---------HHHHHHHHHHHhhHhh
Q 028805 107 NAGSILLGFGVLESVGGGVNTYL-RAGKLFPGPHLFAGA---------AITVLWALAAALVPAM 160 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~-~~G~Lf~gpHl~aGL---------~~v~L~l~Saal~p~i 160 (203)
-+|++++.|+++-++ .|.+ ..++-++-+|++-.+ .+..||.++|.+.+.+
T Consensus 153 gi~aml~Vf~LF~lv----mt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 153 GIGAMLFVFMLFALV----MTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred hHHHHHHHHHHHHHH----HHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 345555544443332 2222 335667889988655 4678888888776655
No 175
>PLN02351 cytochromes b561 family protein
Probab=20.71 E-value=6.4e+02 Score=22.84 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=62.8
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-----CCcchhHHHHHHHHHHHHHHHHhhHh-----hh--cCChhH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVPA-----MQ--KGSETA 167 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-----Lf~gpHl~aGL~~v~L~l~Saal~p~-----i~--kg~~~a 167 (203)
.+-..|-.+|.+.+.+..+=.+.|...=+....+ -.-..|.+.|+.+-.|.+.++.++-. .+ ++-...
T Consensus 115 nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~ 194 (242)
T PLN02351 115 NFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKH 194 (242)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 5778899999999999999999999885555443 22368999999999888887766531 11 111223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 028805 168 RNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 168 R~lHi~LN~llllLFl~QaiTG~ 190 (203)
..=....|++-+++.+.-++-.+
T Consensus 195 ~~Ea~lvN~~Glliv~fG~~Vv~ 217 (242)
T PLN02351 195 GSESMVVNGLGLGLALLSGIVIL 217 (242)
T ss_pred CchhhhHHHHHHHHHHHHHHHHH
Confidence 34566888887777665444333
No 176
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=20.70 E-value=3.3e+02 Score=26.21 Aligned_cols=92 Identities=26% Similarity=0.292 Sum_probs=52.1
Q ss_pred hhhhhhcCcccccccchhhhhhhHHHH-HHHHHHHHHHHHhhhheeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChh
Q 028805 4 QDALAVNGEFGILEGRSVALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPV 82 (203)
Q Consensus 4 ~~~~a~~~~~~~~~g~~~~~~HP~~M~-~L~a~~lyA~yLG~q~rr~rt~~~~i~~~k~~~~~~~~~~~g~~~~~~~~~~ 82 (203)
|+|+++.+++ -+.+..--.+|- .++.+-++-.-.-|+||+. |..||.+ ||.+=+
T Consensus 140 qaaLeVP~~~-----fsatlaaDtv~ySll~~lli~iVpy~~kw~~~-tkpdesK-L~A~~~------------------ 194 (384)
T COG5505 140 QAALEVPGEY-----FSATLAADTVMYSLLFFLLISIVPYKWKWRHY-TKPDESK-LKADGN------------------ 194 (384)
T ss_pred HhhhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCccHHH-Hhhhhh------------------
Confidence 3455555543 133444445555 6777777777788999866 6665543 222211
Q ss_pred HHHHHhhHHHHHHHhhhhhhHhHHhHHHHHHHHHHHHhhhh
Q 028805 83 EIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGG 123 (203)
Q Consensus 83 ~~~~~~~~~~rK~l~kg~~r~~H~~~Gsill~l~vlg~vgG 123 (203)
..+++-+.++|| .-.+.|--+++|.-+...-|.-.++|
T Consensus 195 -e~a~~e~ywKrk--p~Sl~D~afl~Gislav~AVa~~Is~ 232 (384)
T COG5505 195 -EGASAESYWKRK--PISLKDIAFLAGISLAVVAVAMKISG 232 (384)
T ss_pred -hhhhhhhhhhcC--CccHHHHHHHhhHHHHHHHHHHHHHh
Confidence 223333445554 33577888888887766555555554
No 177
>PF12412 DUF3667: Protein of unknown function (DUF3667); InterPro: IPR022134 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=20.64 E-value=79 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.1
Q ss_pred cccccchhhhhhhHHHH
Q 028805 14 GILEGRSVALVHPIVMG 30 (203)
Q Consensus 14 ~~~~g~~~~~~HP~~M~ 30 (203)
+-++|+...+.||+-+.
T Consensus 21 ~Yi~G~R~~Y~~P~r~~ 37 (46)
T PF12412_consen 21 EYIEGKRKRYVNPFRLF 37 (46)
T ss_pred HHHcCcccccCCHHHHH
Confidence 35799999999999987
Done!