Query 028805
Match_columns 203
No_of_seqs 137 out of 159
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 78.3 6.5 0.00022 32.2 7.2 90 100-193 17-151 (235)
2 1kqf_C FDH-N gamma, formate de 73.7 11 0.00037 30.2 7.2 53 100-154 13-72 (217)
3 4gd3_A NI/Fe-hydrogenase 1 B-t 67.6 48 0.0017 26.9 12.6 26 164-189 177-202 (235)
4 1kqf_C FDH-N gamma, formate de 65.7 49 0.0017 26.3 10.3 26 164-189 148-173 (217)
5 1a93_B MAX protein, coiled coi 36.8 5 0.00017 25.2 -0.7 21 43-63 3-23 (34)
6 2wh0_Q Pkcev3, protein kinase 33.6 33 0.0011 20.7 2.6 21 76-96 5-26 (31)
7 4ev6_A Magnesium transport pro 27.2 2E+02 0.0068 24.5 7.5 52 113-166 287-338 (339)
8 2iub_A CORA, divalent cation t 22.5 2.9E+02 0.01 23.7 7.8 58 107-166 305-362 (363)
9 3v5u_A Uncharacterized membran 16.3 1.3E+02 0.0043 26.3 4.0 21 31-51 128-148 (320)
10 1pp9_C Cytochrome B; cytochrom 14.0 6.8E+02 0.023 22.5 8.5 84 104-190 29-131 (379)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=78.30 E-value=6.5 Score=32.21 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=52.5
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCC--C-----cchhHHHHHHHHHHHHHHHHhhH-------------h
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL--F-----PGPHLFAGAAITVLWALAAALVP-------------A 159 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~L--f-----~gpHl~aGL~~v~L~l~Saal~p-------------~ 159 (203)
..|--|...-...+++.+.|...+-.......+.. + ...|.++|.++++++++=..-.- .
T Consensus 17 ~~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~g~~~ar~~~~~p~ 96 (235)
T 4gd3_A 17 PVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPV 96 (235)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhcccc
Confidence 46788998777777777766554321111011111 1 13799999999999887433211 0
Q ss_pred h------------------hc-------CChhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028805 160 M------------------QK-------GSETARNLHIALNALNILLFIWQIPTGIDIV 193 (203)
Q Consensus 160 i------------------~k-------g~~~aR~lHi~LN~llllLFl~QaiTG~~IV 193 (203)
. .+ -|++.+..|. ++.++.+.|.+||+-..
T Consensus 97 ~~~~~~~~~~~~~~~yl~~~~~p~~~~~~n~~~~~~~~----~l~~ll~~~~ltG~~~~ 151 (235)
T 4gd3_A 97 WRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMF----GYFLMSVFMIITGFALY 151 (235)
T ss_dssp ------CCSTTTSSSSSCC-----------CCCTTTHH----HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCCCCCccCCCCHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 0 00 1445555654 67777888999998653
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=73.68 E-value=11 Score=30.20 Aligned_cols=53 Identities=19% Similarity=0.009 Sum_probs=33.2
Q ss_pred hhhHhHHhHHHHHHHHHHHHhhhhhhhhhhc-----CCC--CCcchhHHHHHHHHHHHHHHH
Q 028805 100 SYRDRHYNAGSILLGFGVLESVGGGVNTYLR-----AGK--LFPGPHLFAGAAITVLWALAA 154 (203)
Q Consensus 100 ~~r~~H~~~Gsill~l~vlg~vgG~~~T~~~-----~G~--Lf~gpHl~aGL~~v~L~l~Sa 154 (203)
..|--|.-....++++.+.|.... ..... .|. .....|.++|.++++++++=.
T Consensus 13 ~~R~~HW~~a~~ii~l~~tG~~i~--~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~ 72 (217)
T 1kqf_C 13 IDRACHWTVVICFFLVALSGISFF--FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMF 72 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 467889888777777776665432 11100 011 124679999999998887643
No 3
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=67.58 E-value=48 Score=26.90 Aligned_cols=26 Identities=15% Similarity=-0.111 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 164 SETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
..++|.+|-.+..+++++.+.+++--
T Consensus 177 ~~~~~~iH~~~a~~l~~~v~lHv~aa 202 (235)
T 4gd3_A 177 SMDIHSWHRLGMWLIGAFVIGHVYMA 202 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999888888887654
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=65.71 E-value=49 Score=26.27 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 164 SETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
..++|.+|..+..+++++.+.+++-.
T Consensus 148 ~~~~~~iH~~~a~~l~~~v~~Hv~~a 173 (217)
T 1kqf_C 148 VRYSLLIHAAAGIILIHAILIHMYMA 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999888888888877654
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.81 E-value=5 Score=25.22 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=15.3
Q ss_pred hhhheeeeccccchHHHhhhc
Q 028805 43 GWQWRRVRTIQTDINELKKQV 63 (203)
Q Consensus 43 G~q~rr~rt~~~~i~~~k~~~ 63 (203)
|.++|+.-+-+.+|++||+|-
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN 23 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQN 23 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhHhhHhhHHHHHHHH
Confidence 566777767788888887763
No 6
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=33.58 E-value=33 Score=20.72 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHhhHH-HHHHH
Q 028805 76 ETAPSPVEIKIQQLTE-ERKEL 96 (203)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~rK~l 96 (203)
.+|.||-+++|.+|+. .||.|
T Consensus 5 saptspcdqeikelennirkal 26 (31)
T 2wh0_Q 5 SAPTSPCDQEIKELENNIRKAL 26 (31)
T ss_pred cCCCCchHHHHHHHHHHHHHHh
Confidence 3567899999999976 46654
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.23 E-value=2e+02 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.034 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 113 LGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 113 l~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
..|..+.++.|+++--+.+=+.-.+++.|. .++++|++.+...-...|++.|
T Consensus 287 ~IflP~T~IaGiyGMNf~~mPel~~~~gy~--~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYLPLANNPQGFW--LVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCCTTSSCTTHHH--HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhccCcCCCCCCccCchHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 344455666676664443323334454432 2333344433333344455555
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.53 E-value=2.9e+02 Score=23.73 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 107 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 107 ~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
.+-++-..|..+-++.|+++--+.+=+...+++-|. .++++|++.++..-...|++.|
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~--~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYP--VVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------CH--HHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHH--HHHHHHHHHHHHHHHHHHHccc
Confidence 344455566667777777664444323333444332 2233344433333344455555
No 9
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=16.26 E-value=1.3e+02 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhheeeec
Q 028805 31 SLLVYTLWAGYLGWQWRRVRT 51 (203)
Q Consensus 31 ~L~a~~lyA~yLG~q~rr~rt 51 (203)
++..+.+|..|+.+++|+.++
T Consensus 128 g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 128 GVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 667788999999999986653
No 10
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=14.03 E-value=6.8e+02 Score=22.51 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=50.6
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhhhhcCCC-------------------CCcchhHHHHHHHHHHHHHHHHhhHhhhcCC
Q 028805 104 RHYNAGSILLGFGVLESVGGGVNTYLRAGK-------------------LFPGPHLFAGAAITVLWALAAALVPAMQKGS 164 (203)
Q Consensus 104 ~H~~~Gsill~l~vlg~vgG~~~T~~~~G~-------------------Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~ 164 (203)
-+++.||++....+.-.+-|+..+....-+ +...-|.++.-.+..++-+=..=+ ++-++
T Consensus 29 ~~w~fGsll~~~l~iqi~TGi~Lam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~~ylHi~Rg--lyygs 106 (379)
T 1pp9_C 29 SWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRG--LYYGS 106 (379)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhe
Confidence 578899999877777788887766543322 345778887777666665532222 22122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 165 ETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 165 ~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
-..++ ==..+++++++....+++|-
T Consensus 107 y~~~~-~W~~Gv~l~ll~m~~aF~GY 131 (379)
T 1pp9_C 107 YTFLE-TWNIGVILLLTVMATAFMGY 131 (379)
T ss_dssp GGSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcc-eehhhHHHHHHHHHHHheee
Confidence 21111 23456667777777777774
Done!