Query 028805
Match_columns 203
No_of_seqs 137 out of 159
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 03:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90b_ f.21.1.2 (B:) Cytochro 67.8 11 0.00082 29.6 8.3 85 106-191 31-134 (212)
2 d1y5ic1 f.21.3.1 (C:1-225) Res 53.8 42 0.003 25.5 10.7 28 164-191 115-142 (225)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 53.7 31 0.0022 27.7 8.7 86 106-192 30-134 (261)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 39.1 67 0.0049 25.2 8.5 82 106-190 17-117 (246)
5 d1kqfc_ f.21.1.1 (C:) Formate 24.3 1.2E+02 0.0088 21.9 9.3 85 102-190 14-131 (216)
6 d1q90d_ f.32.1.1 (D:) Subunit 20.3 83 0.0061 23.2 5.4 49 141-189 92-144 (156)
7 d1jb0i_ f.23.17.1 (I:) Subunit 17.0 35 0.0025 20.3 1.9 15 21-35 18-33 (38)
8 d1b0na1 a.34.1.1 (A:74-108) Si 15.4 12 0.00086 22.0 -0.6 10 193-202 22-31 (35)
9 d1nekd_ f.21.2.2 (D:) Succinat 14.1 1E+02 0.0073 20.9 4.2 17 173-189 57-73 (113)
10 d1ydxa2 d.287.1.2 (A:194-374) 12.5 44 0.0032 22.9 1.8 20 82-101 158-177 (181)
No 1
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=67.82 E-value=11 Score=29.65 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=63.0
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCC-------------------CCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGK-------------------LFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~-------------------Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
|+.|+++...++.-.+-|+..+....-+ +..+.|.++.=.++.++.+=..-+-..... +.
T Consensus 31 ~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gsy-k~ 109 (212)
T d1q90b_ 31 YCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGF-KR 109 (212)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCcc-cC
Confidence 8899999999999999998876544322 335779999988888888755544333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGID 191 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~ 191 (203)
.|.+-=...++++++....++||--
T Consensus 110 pre~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 110 PRELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceehHhHHHHHHHHHHHHhhhh
Confidence 4777778889999999999999853
No 2
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=53.85 E-value=42 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028805 164 SETARNLHIALNALNILLFIWQIPTGID 191 (203)
Q Consensus 164 ~~~aR~lHi~LN~llllLFl~QaiTG~~ 191 (203)
++..|.....-..+++++.+.+..||.-
T Consensus 115 ~~~~r~~~~~~d~~~L~ll~~i~~tG~~ 142 (225)
T d1y5ic1 115 SPRVRATTTGADILILSLLVIQCALGLL 142 (225)
T ss_dssp SHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 4556766667778888888889999963
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.72 E-value=31 Score=27.71 Aligned_cols=86 Identities=15% Similarity=0.019 Sum_probs=62.3
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCC-------------------CCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGK-------------------LFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~-------------------Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
++.|+++...+++-.+-|+..+.....+ +..+-|.++.-.+..++.+=..-+-.....+.
T Consensus 30 w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~- 108 (261)
T d3cx5c2 30 WNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRS- 108 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTST-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccC-
Confidence 7789999999999999998877655433 34578999988888888775554444433222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGIDI 192 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~~I 192 (203)
-|..-=...++++++....++||--.
T Consensus 109 pre~~W~~Gv~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 109 PRVTLWNVGVIIFILTIATAFLGYCC 134 (261)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHhhHHHHHHHHHHHHhhhhc
Confidence 35555567888888888889888644
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=39.13 E-value=67 Score=25.20 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcCCC-------------------CCcchhHHHHHHHHHHHHHHHHhhHhhhcCChh
Q 028805 106 YNAGSILLGFGVLESVGGGVNTYLRAGK-------------------LFPGPHLFAGAAITVLWALAAALVPAMQKGSET 166 (203)
Q Consensus 106 ~~~Gsill~l~vlg~vgG~~~T~~~~G~-------------------Lf~gpHl~aGL~~v~L~l~Saal~p~i~kg~~~ 166 (203)
++.|+++...++.-.+-|+..+.....+ +..+.|.++.-.+..++-+=..-+-.....+ .
T Consensus 17 w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~-~ 95 (246)
T d1ppjc2 17 WNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYT-F 95 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcCcc-c
Confidence 7899999999999999999887665432 3357899988888887777555444443211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 167 ARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 167 aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
-|. =...++++++....+++|-
T Consensus 96 ~~~--w~~G~~l~~l~m~~af~GY 117 (246)
T d1ppjc2 96 LET--WNIGVILLLTVMATAFMGY 117 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHHHHHeec
Confidence 233 3467788888888888884
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=24.27 E-value=1.2e+02 Score=21.88 Aligned_cols=85 Identities=14% Similarity=0.001 Sum_probs=0.0
Q ss_pred hHhHHhHHHHHHHHHHHHhhhhhhhhhhcCCCCCc-----chhHHHHHHHHHHHHHHHH---------------------
Q 028805 102 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFP-----GPHLFAGAAITVLWALAAA--------------------- 155 (203)
Q Consensus 102 r~~H~~~Gsill~l~vlg~vgG~~~T~~~~G~Lf~-----gpHl~aGL~~v~L~l~Saa--------------------- 155 (203)
|--|.-.-..++.+.+.|.....-....-.+..+. ..|.++|+..+..+++-..
T Consensus 14 Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
T d1kqfc_ 14 RACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVE 93 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Q ss_pred -------hhHhhhcCChhHHHHHHHHHHHHHHHHHHHhhhhH
Q 028805 156 -------LVPAMQKGSETARNLHIALNALNILLFIWQIPTGI 190 (203)
Q Consensus 156 -------l~p~i~kg~~~aR~lHi~LN~llllLFl~QaiTG~ 190 (203)
-.|...+-|+..|..+. .++++.+.+++||+
T Consensus 94 ~~~~~~~~~~~~~~~n~~qkl~~~----~~~~~~~~~~~TGl 131 (216)
T d1kqfc_ 94 VLKGNEHKVADVGKYNAGQKMMFW----SIMSMIFVLLVTGV 131 (216)
T ss_dssp HHTTCHHHHCCCCSSCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHhcCCCCCccHHhhhHHHHHHHH----HHHHHHHHHHHHHH
No 6
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.25 E-value=83 Score=23.21 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhHhhhcC----ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 028805 141 FAGAAITVLWALAAALVPAMQKG----SETARNLHIALNALNILLFIWQIPTG 189 (203)
Q Consensus 141 ~aGL~~v~L~l~Saal~p~i~kg----~~~aR~lHi~LN~llllLFl~QaiTG 189 (203)
..|+.+.++.++...+.|.+++. +...|.+...+-.+..+.+.|=.+-|
T Consensus 92 l~GVi~~~~~i~~L~~lP~l~~~~~~~~~~~rp~~~~~f~~~~~~l~~Lgi~~ 144 (156)
T d1q90d_ 92 LLGVLLMAAVPAGLITVPFIESINKFQNPYRRPIATILFLLGTLVAVWLGIGS 144 (156)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCSCCCCSGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCccccHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888888999998752 34556666665555554454444433
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=17.02 E-value=35 Score=20.25 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=10.0
Q ss_pred hhhhhhH-HHHHHHHH
Q 028805 21 VALVHPI-VMGSLLVY 35 (203)
Q Consensus 21 ~~~~HP~-~M~~L~a~ 35 (203)
+.|.-|. +|+.||.|
T Consensus 18 v~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 18 VCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhee
Confidence 4566676 67777765
No 8
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=15.36 E-value=12 Score=22.04 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=7.5
Q ss_pred HHHHHhhcCC
Q 028805 193 VFKVLEFTKW 202 (203)
Q Consensus 193 Vqk~l~~~~~ 202 (203)
-+.|+||++|
T Consensus 22 FrEflef~kW 31 (35)
T d1b0na1 22 FREFLDYQKW 31 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3578888887
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=14.11 E-value=1e+02 Score=20.85 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 028805 173 ALNALNILLFIWQIPTG 189 (203)
Q Consensus 173 ~LN~llllLFl~QaiTG 189 (203)
++.++.++...+++.-|
T Consensus 57 il~~l~l~~~~~H~~lG 73 (113)
T d1nekd_ 57 VFTLLALFSILIHAWIG 73 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444455555
No 10
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=12.46 E-value=44 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=13.3
Q ss_pred hHHHHHhhHHHHHHHhhhhh
Q 028805 82 VEIKIQQLTEERKELLKGSY 101 (203)
Q Consensus 82 ~~~~~~~~~~~rK~l~kg~~ 101 (203)
.+++|++|++.|+.|++..|
T Consensus 158 ~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 158 YKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777776554
Done!