Query 028806
Match_columns 203
No_of_seqs 299 out of 1419
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 2.5E-31 5.4E-36 208.0 15.4 157 1-160 457-614 (707)
2 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-32 1.4E-36 198.5 10.1 159 1-162 223-384 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1E-30 2.2E-35 190.5 14.6 154 1-157 121-280 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-31 7.2E-36 194.8 10.4 158 1-161 267-426 (459)
5 KOG0279 G protein beta subunit 100.0 2.7E-29 5.9E-34 176.2 16.2 157 1-161 69-230 (315)
6 KOG0263 Transcription initiati 100.0 5.5E-30 1.2E-34 200.6 13.0 155 1-158 499-654 (707)
7 KOG0271 Notchless-like WD40 re 100.0 8.6E-30 1.9E-34 185.7 12.4 160 1-162 163-448 (480)
8 KOG0266 WD40 repeat-containing 100.0 6.4E-28 1.4E-32 189.8 19.9 158 1-160 209-371 (456)
9 KOG0266 WD40 repeat-containing 100.0 7.8E-28 1.7E-32 189.3 17.5 155 1-157 165-322 (456)
10 KOG0285 Pleiotropic regulator 100.0 2E-27 4.3E-32 172.2 15.4 155 1-158 157-312 (460)
11 KOG0295 WD40 repeat-containing 99.9 1.9E-26 4.1E-31 167.2 16.7 159 1-162 199-373 (406)
12 PTZ00421 coronin; Provisional 99.9 7.7E-26 1.7E-30 178.1 20.5 154 1-156 81-248 (493)
13 KOG0279 G protein beta subunit 99.9 3.8E-26 8.3E-31 160.5 16.3 155 1-160 111-269 (315)
14 KOG0291 WD40-repeat-containing 99.9 3.1E-26 6.8E-31 179.3 17.5 153 1-155 356-510 (893)
15 KOG0275 Conserved WD40 repeat- 99.9 1.3E-27 2.7E-32 171.8 7.9 161 2-164 220-389 (508)
16 KOG0315 G-protein beta subunit 99.9 4.4E-26 9.6E-31 158.1 15.2 155 1-158 89-293 (311)
17 KOG0286 G-protein beta subunit 99.9 8.7E-26 1.9E-30 159.7 16.2 158 1-162 103-268 (343)
18 KOG0284 Polyadenylation factor 99.9 3E-27 6.5E-32 173.5 9.1 153 1-157 144-298 (464)
19 KOG0315 G-protein beta subunit 99.9 2.1E-25 4.6E-30 154.7 15.9 149 8-160 11-161 (311)
20 KOG0286 G-protein beta subunit 99.9 4.5E-25 9.7E-30 156.2 17.5 161 1-164 61-228 (343)
21 KOG0273 Beta-transducin family 99.9 2.6E-25 5.7E-30 166.0 16.4 156 1-159 282-488 (524)
22 KOG0645 WD40 repeat protein [G 99.9 7.8E-25 1.7E-29 153.4 17.7 154 1-156 67-228 (312)
23 KOG0284 Polyadenylation factor 99.9 4.3E-26 9.4E-31 167.5 11.0 154 1-157 186-341 (464)
24 KOG0292 Vesicle coat complex C 99.9 1.2E-25 2.6E-30 178.9 13.6 159 1-162 15-174 (1202)
25 KOG0319 WD40-repeat-containing 99.9 1.8E-24 3.8E-29 169.0 15.4 153 1-156 469-622 (775)
26 KOG0645 WD40 repeat protein [G 99.9 8.4E-24 1.8E-28 148.3 17.1 151 1-153 20-180 (312)
27 KOG0273 Beta-transducin family 99.9 3.1E-24 6.8E-29 160.3 15.4 149 1-153 365-523 (524)
28 PTZ00421 coronin; Provisional 99.9 1.7E-23 3.7E-28 164.9 20.5 154 3-158 28-203 (493)
29 PTZ00420 coronin; Provisional 99.9 1.8E-23 3.9E-28 166.1 20.7 151 1-155 80-250 (568)
30 KOG0283 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 171.5 12.7 154 1-160 273-488 (712)
31 KOG0276 Vesicle coat complex C 99.9 3.5E-24 7.6E-29 165.0 14.3 157 1-160 103-264 (794)
32 KOG0296 Angio-associated migra 99.9 2.5E-23 5.4E-28 151.1 17.0 158 1-161 70-228 (399)
33 KOG0282 mRNA splicing factor [ 99.9 9.2E-25 2E-29 163.4 9.9 154 1-158 220-377 (503)
34 KOG0265 U5 snRNP-specific prot 99.9 2.3E-23 5E-28 148.0 14.6 154 1-158 53-209 (338)
35 PTZ00420 coronin; Provisional 99.9 1.6E-22 3.4E-27 160.7 20.3 144 13-159 50-203 (568)
36 KOG0277 Peroxisomal targeting 99.9 3.1E-23 6.8E-28 144.4 13.4 155 1-158 66-226 (311)
37 KOG0285 Pleiotropic regulator 99.9 1.3E-23 2.8E-28 152.6 11.9 156 1-160 199-355 (460)
38 cd00200 WD40 WD40 domain, foun 99.9 3.6E-22 7.9E-27 147.0 19.8 156 1-159 15-171 (289)
39 KOG0265 U5 snRNP-specific prot 99.9 5.1E-23 1.1E-27 146.2 14.4 156 1-160 96-253 (338)
40 KOG0276 Vesicle coat complex C 99.9 4.8E-23 1E-27 158.9 15.4 156 3-160 63-222 (794)
41 KOG0295 WD40 repeat-containing 99.9 2.5E-23 5.4E-28 151.1 11.2 156 2-159 115-271 (406)
42 KOG0306 WD40-repeat-containing 99.9 2.8E-23 6.1E-28 162.8 12.3 151 1-154 514-665 (888)
43 cd00200 WD40 WD40 domain, foun 99.9 6E-22 1.3E-26 145.8 18.8 157 1-160 57-214 (289)
44 KOG0269 WD40 repeat-containing 99.9 2.4E-23 5.2E-28 163.5 11.8 156 1-157 139-300 (839)
45 KOG0318 WD40 repeat stress pro 99.9 4.3E-22 9.4E-27 150.8 17.9 154 1-158 196-355 (603)
46 KOG0269 WD40 repeat-containing 99.9 1.8E-23 4E-28 164.2 10.9 153 2-157 94-254 (839)
47 PLN00181 protein SPA1-RELATED; 99.9 7.4E-22 1.6E-26 165.4 21.0 149 2-155 539-692 (793)
48 KOG0293 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 152.7 11.5 153 1-155 275-515 (519)
49 KOG0316 Conserved WD40 repeat- 99.9 1.6E-22 3.6E-27 139.5 14.0 157 2-160 24-220 (307)
50 KOG0277 Peroxisomal targeting 99.9 1.2E-22 2.5E-27 141.6 13.3 151 2-155 111-267 (311)
51 KOG0640 mRNA cleavage stimulat 99.9 1E-22 2.2E-27 145.7 13.3 154 2-158 119-296 (430)
52 KOG0289 mRNA splicing factor [ 99.9 1.9E-22 4.2E-27 149.5 14.7 156 2-159 268-425 (506)
53 KOG0319 WD40-repeat-containing 99.9 1E-22 2.3E-27 159.2 13.3 150 8-160 425-584 (775)
54 PLN00181 protein SPA1-RELATED; 99.9 1.4E-21 3E-26 163.7 20.9 152 1-156 581-741 (793)
55 KOG0316 Conserved WD40 repeat- 99.9 4.5E-22 9.7E-27 137.4 14.7 112 2-115 66-178 (307)
56 KOG0318 WD40 repeat stress pro 99.9 5.1E-22 1.1E-26 150.4 16.2 156 2-159 66-271 (603)
57 KOG0281 Beta-TrCP (transducin 99.9 3.4E-23 7.3E-28 150.2 9.5 147 6-158 246-433 (499)
58 KOG0267 Microtubule severing p 99.9 4.9E-24 1.1E-28 166.4 5.5 159 1-162 76-235 (825)
59 KOG0264 Nucleosome remodeling 99.9 5.2E-22 1.1E-26 147.6 15.3 157 1-159 183-353 (422)
60 KOG0264 Nucleosome remodeling 99.9 8.4E-22 1.8E-26 146.5 15.7 155 1-157 233-408 (422)
61 KOG0278 Serine/threonine kinas 99.9 1.2E-21 2.7E-26 136.4 15.5 152 2-159 150-303 (334)
62 KOG0772 Uncharacterized conser 99.9 3E-22 6.5E-27 151.5 13.1 158 1-158 220-399 (641)
63 KOG0305 Anaphase promoting com 99.9 2.8E-22 6.2E-27 154.3 13.1 155 1-159 223-382 (484)
64 KOG0640 mRNA cleavage stimulat 99.9 1.7E-22 3.6E-27 144.6 10.4 157 1-158 178-340 (430)
65 KOG0643 Translation initiation 99.9 2.1E-21 4.6E-26 136.2 15.3 157 1-160 16-227 (327)
66 KOG0310 Conserved WD40 repeat- 99.9 3.7E-21 8E-26 144.4 16.9 157 2-162 117-277 (487)
67 KOG0296 Angio-associated migra 99.9 3.6E-21 7.8E-26 140.0 16.0 149 1-153 154-398 (399)
68 KOG0302 Ribosome Assembly prot 99.9 8.6E-22 1.9E-26 143.9 12.6 152 1-154 217-379 (440)
69 KOG0274 Cdc4 and related F-box 99.9 3.9E-21 8.6E-26 152.2 17.2 150 3-160 257-408 (537)
70 KOG0292 Vesicle coat complex C 99.9 2.2E-21 4.8E-26 154.9 15.4 159 1-161 99-288 (1202)
71 KOG0281 Beta-TrCP (transducin 99.9 5.8E-22 1.3E-26 143.8 11.0 144 6-158 329-482 (499)
72 KOG0313 Microtubule binding pr 99.9 2E-21 4.4E-26 141.9 13.8 150 2-156 200-379 (423)
73 KOG0282 mRNA splicing factor [ 99.9 4.1E-22 8.9E-27 149.4 10.2 149 1-151 305-503 (503)
74 KOG0293 WD40 repeat-containing 99.9 2.3E-21 5E-26 143.2 13.3 156 1-158 230-389 (519)
75 KOG0646 WD40 repeat protein [G 99.9 4.6E-21 9.9E-26 143.2 14.7 154 2-156 88-310 (476)
76 KOG0308 Conserved WD40 repeat- 99.9 2.1E-21 4.5E-26 150.3 13.2 157 3-161 81-251 (735)
77 KOG0291 WD40-repeat-containing 99.9 1.5E-20 3.2E-25 147.9 17.8 157 1-159 313-472 (893)
78 KOG0305 Anaphase promoting com 99.9 5.2E-21 1.1E-25 147.4 15.0 151 1-155 307-463 (484)
79 KOG0310 Conserved WD40 repeat- 99.9 2E-21 4.3E-26 145.8 12.3 151 2-157 75-229 (487)
80 KOG1407 WD40 repeat protein [F 99.9 8.7E-21 1.9E-25 132.7 14.7 157 1-160 70-268 (313)
81 KOG0647 mRNA export protein (c 99.9 9.2E-21 2E-25 135.0 14.9 151 1-158 33-189 (347)
82 KOG0973 Histone transcription 99.9 2.8E-21 6.2E-26 156.6 13.9 153 1-155 19-203 (942)
83 KOG0294 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 135.2 15.3 104 6-111 52-158 (362)
84 KOG1446 Histone H3 (Lys4) meth 99.9 3.6E-20 7.9E-25 132.5 17.3 157 1-160 106-269 (311)
85 KOG0275 Conserved WD40 repeat- 99.9 6.8E-22 1.5E-26 142.5 8.5 156 1-158 269-428 (508)
86 KOG1273 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 134.3 15.1 157 1-158 29-231 (405)
87 KOG0289 mRNA splicing factor [ 99.9 2.5E-20 5.5E-25 138.4 16.2 148 2-151 310-460 (506)
88 KOG0299 U3 snoRNP-associated p 99.9 1.6E-20 3.5E-25 140.1 12.8 153 1-158 208-361 (479)
89 KOG1539 WD repeat protein [Gen 99.9 9.9E-20 2.1E-24 144.5 17.6 152 1-155 454-650 (910)
90 KOG1407 WD40 repeat protein [F 99.8 1.1E-19 2.5E-24 127.2 14.8 140 1-144 153-293 (313)
91 KOG0313 Microtubule binding pr 99.8 4.5E-20 9.7E-25 135.0 13.2 148 2-154 267-419 (423)
92 KOG1274 WD40 repeat protein [G 99.8 9.4E-20 2E-24 145.8 16.1 154 1-155 102-264 (933)
93 KOG0639 Transducin-like enhanc 99.8 2.5E-20 5.4E-25 141.0 11.0 154 2-158 426-586 (705)
94 KOG1446 Histone H3 (Lys4) meth 99.8 6.1E-19 1.3E-23 126.3 17.3 153 1-158 20-175 (311)
95 KOG0268 Sof1-like rRNA process 99.8 1E-20 2.2E-25 137.8 8.2 156 1-158 193-350 (433)
96 KOG0308 Conserved WD40 repeat- 99.8 2.5E-19 5.5E-24 138.9 14.9 149 4-155 127-287 (735)
97 KOG0306 WD40-repeat-containing 99.8 2.2E-19 4.9E-24 141.2 14.7 156 2-160 419-587 (888)
98 KOG0772 Uncharacterized conser 99.8 1.4E-19 3E-24 137.2 12.2 157 1-158 323-492 (641)
99 KOG0643 Translation initiation 99.8 4.1E-19 8.8E-24 124.8 13.6 149 4-154 61-318 (327)
100 KOG0973 Histone transcription 99.8 3.9E-19 8.4E-24 144.4 15.4 157 1-158 135-360 (942)
101 KOG0283 WD40 repeat-containing 99.8 6.7E-19 1.4E-23 139.7 16.0 151 1-156 375-535 (712)
102 KOG0274 Cdc4 and related F-box 99.8 1.7E-18 3.8E-23 137.3 18.2 148 7-160 218-366 (537)
103 KOG0641 WD40 repeat protein [G 99.8 2.3E-18 5.1E-23 118.8 16.2 154 1-156 95-306 (350)
104 KOG0288 WD40 repeat protein Ti 99.8 1E-19 2.2E-24 134.4 10.1 158 1-160 225-424 (459)
105 KOG0270 WD40 repeat-containing 99.8 1.8E-18 3.8E-23 128.9 16.1 156 2-160 250-411 (463)
106 KOG0267 Microtubule severing p 99.8 5.8E-20 1.2E-24 143.9 8.6 153 7-162 40-193 (825)
107 KOG2096 WD40 repeat protein [G 99.8 7E-19 1.5E-23 126.6 13.3 157 1-161 92-316 (420)
108 KOG0303 Actin-binding protein 99.8 8.1E-19 1.7E-23 129.2 13.3 155 1-158 87-254 (472)
109 KOG4283 Transcription-coupled 99.8 1.4E-18 3.1E-23 123.9 14.0 146 6-155 55-221 (397)
110 KOG1036 Mitotic spindle checkp 99.8 2.5E-18 5.5E-23 122.8 15.2 150 1-159 19-169 (323)
111 KOG0288 WD40 repeat protein Ti 99.8 2.3E-18 5E-23 127.3 14.5 140 8-150 313-458 (459)
112 KOG1332 Vesicle coat complex C 99.8 4.6E-18 1E-22 118.2 14.2 148 6-155 22-195 (299)
113 KOG0300 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 123.3 13.5 151 3-156 280-431 (481)
114 KOG0639 Transducin-like enhanc 99.8 1.6E-18 3.4E-23 131.4 12.1 149 1-152 515-703 (705)
115 KOG1007 WD repeat protein TSSC 99.8 3.4E-18 7.5E-23 121.5 12.9 156 1-160 129-296 (370)
116 KOG0641 WD40 repeat protein [G 99.8 1.8E-17 3.8E-22 114.5 16.0 147 4-153 191-349 (350)
117 KOG0300 WD40 repeat-containing 99.8 9.9E-19 2.1E-23 125.9 9.4 146 8-155 161-346 (481)
118 KOG0647 mRNA export protein (c 99.8 1.2E-17 2.6E-22 119.2 14.6 152 1-154 78-282 (347)
119 PF08662 eIF2A: Eukaryotic tra 99.8 4.1E-17 9E-22 114.6 17.2 148 1-156 11-182 (194)
120 KOG1408 WD40 repeat protein [F 99.8 3.5E-18 7.5E-23 134.4 12.4 102 51-154 610-714 (1080)
121 KOG0302 Ribosome Assembly prot 99.8 1.6E-17 3.5E-22 121.8 14.5 145 1-150 263-435 (440)
122 KOG0278 Serine/threonine kinas 99.8 4.8E-19 1E-23 123.5 5.2 147 7-158 71-218 (334)
123 KOG0301 Phospholipase A2-activ 99.8 9.7E-18 2.1E-22 131.0 12.8 137 9-154 114-250 (745)
124 KOG4283 Transcription-coupled 99.8 2.8E-17 6E-22 117.3 13.4 152 3-158 109-281 (397)
125 KOG0649 WD40 repeat protein [G 99.8 9.6E-17 2.1E-21 111.8 15.1 155 2-160 17-193 (325)
126 KOG0294 WD40 repeat-containing 99.8 5.8E-17 1.2E-21 116.4 14.2 145 9-158 3-162 (362)
127 KOG2048 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 123.6 17.5 154 1-158 31-189 (691)
128 KOG0771 Prolactin regulatory e 99.7 2.3E-17 5E-22 122.3 11.7 151 1-154 150-355 (398)
129 KOG0299 U3 snoRNP-associated p 99.7 2.3E-17 5.1E-22 123.4 11.3 151 1-154 148-317 (479)
130 KOG1445 Tumor-specific antigen 99.7 1.7E-17 3.7E-22 129.1 10.7 153 3-158 587-755 (1012)
131 KOG2110 Uncharacterized conser 99.7 6.1E-16 1.3E-20 113.2 17.8 147 7-156 97-251 (391)
132 KOG1188 WD40 repeat protein [G 99.7 1.1E-16 2.3E-21 116.1 13.4 146 8-155 41-198 (376)
133 KOG1445 Tumor-specific antigen 99.7 1.8E-17 3.9E-22 129.0 9.3 154 1-156 633-801 (1012)
134 KOG4328 WD40 protein [Function 99.7 1.1E-16 2.3E-21 120.0 12.8 151 1-153 192-399 (498)
135 KOG2055 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 119.9 12.9 152 1-153 350-512 (514)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.1E-15 4.6E-20 112.7 19.1 151 1-157 36-191 (300)
137 KOG1007 WD repeat protein TSSC 99.7 2.2E-16 4.7E-21 112.5 12.8 152 2-156 177-364 (370)
138 KOG4378 Nuclear protein COP1 [ 99.7 8.1E-17 1.8E-21 122.0 11.0 150 5-158 89-285 (673)
139 KOG0301 Phospholipase A2-activ 99.7 3.6E-16 7.8E-21 122.4 14.9 140 5-155 150-290 (745)
140 KOG1274 WD40 repeat protein [G 99.7 5E-16 1.1E-20 124.9 16.0 154 1-159 19-174 (933)
141 KOG2919 Guanine nucleotide-bin 99.7 1.8E-16 3.8E-21 114.5 12.1 152 1-156 164-330 (406)
142 KOG0303 Actin-binding protein 99.7 5.6E-17 1.2E-21 119.6 9.8 126 32-160 76-210 (472)
143 KOG1036 Mitotic spindle checkp 99.7 4E-16 8.6E-21 111.7 13.6 152 3-157 102-266 (323)
144 KOG0268 Sof1-like rRNA process 99.7 6.6E-17 1.4E-21 118.1 9.8 147 4-159 75-224 (433)
145 KOG2055 WD40 repeat protein [G 99.7 8E-16 1.7E-20 115.5 15.5 156 1-156 219-420 (514)
146 KOG1332 Vesicle coat complex C 99.7 1.1E-16 2.3E-21 111.5 10.0 146 6-153 69-241 (299)
147 KOG2048 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 119.1 16.7 160 1-163 75-243 (691)
148 KOG0321 WD40 repeat-containing 99.7 5.4E-16 1.2E-20 120.5 14.6 157 1-158 106-306 (720)
149 KOG2096 WD40 repeat protein [G 99.7 4.1E-16 9E-21 112.4 12.9 143 5-151 197-400 (420)
150 KOG1034 Transcriptional repres 99.7 1E-15 2.2E-20 110.7 14.4 153 1-153 141-383 (385)
151 KOG0322 G-protein beta subunit 99.7 2.7E-16 5.9E-21 110.6 10.6 142 9-152 167-322 (323)
152 KOG1009 Chromatin assembly com 99.7 2.4E-16 5.2E-21 116.5 10.4 153 2-156 20-198 (434)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 8.5E-15 1.8E-19 109.5 18.6 145 7-157 1-149 (300)
154 KOG1063 RNA polymerase II elon 99.7 8.4E-16 1.8E-20 120.4 13.2 151 1-153 531-699 (764)
155 KOG3881 Uncharacterized conser 99.7 2.2E-15 4.7E-20 111.1 13.6 146 9-156 163-323 (412)
156 KOG1272 WD40-repeat-containing 99.7 2.8E-16 6.2E-21 118.1 8.7 156 2-160 136-330 (545)
157 KOG0642 Cell-cycle nuclear pro 99.7 2E-15 4.3E-20 115.8 13.0 109 1-110 300-426 (577)
158 KOG0290 Conserved WD40 repeat- 99.7 2.7E-15 5.9E-20 107.0 12.7 150 6-157 162-322 (364)
159 KOG2919 Guanine nucleotide-bin 99.7 1.8E-15 3.8E-20 109.4 11.6 142 1-144 213-361 (406)
160 KOG0646 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 113.2 12.4 146 8-156 51-209 (476)
161 KOG2106 Uncharacterized conser 99.7 1.1E-14 2.3E-19 110.8 16.1 145 1-152 374-520 (626)
162 KOG2445 Nuclear pore complex c 99.7 2.8E-14 6.1E-19 102.5 17.0 153 1-156 19-259 (361)
163 KOG1523 Actin-related protein 99.6 5.5E-15 1.2E-19 106.6 12.7 150 1-151 16-174 (361)
164 KOG0270 WD40 repeat-containing 99.6 4.8E-15 1E-19 110.8 12.3 147 6-156 191-363 (463)
165 KOG1408 WD40 repeat protein [F 99.6 4.4E-15 9.5E-20 117.2 12.1 154 9-164 394-637 (1080)
166 COG2319 FOG: WD40 repeat [Gene 99.6 1.1E-13 2.5E-18 106.8 18.9 155 1-159 161-320 (466)
167 KOG0307 Vesicle coat complex C 99.6 1.2E-15 2.7E-20 125.0 7.8 155 1-158 122-289 (1049)
168 KOG1188 WD40 repeat protein [G 99.6 2.8E-14 6E-19 103.8 13.8 151 7-159 84-248 (376)
169 KOG2394 WD40 protein DMR-N9 [G 99.6 8.7E-15 1.9E-19 112.0 11.6 94 37-133 290-384 (636)
170 KOG1034 Transcriptional repres 99.6 7.1E-14 1.5E-18 101.3 15.7 144 9-156 57-214 (385)
171 KOG1273 WD40 repeat protein [G 99.6 2.1E-14 4.6E-19 103.6 12.7 111 40-154 26-138 (405)
172 KOG0650 WD40 repeat nucleolar 99.6 2.7E-15 5.8E-20 116.1 8.6 148 1-150 572-732 (733)
173 KOG2111 Uncharacterized conser 99.6 2.8E-13 6.1E-18 97.8 17.1 148 8-157 105-260 (346)
174 KOG0321 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 111.8 12.3 149 8-159 65-254 (720)
175 PRK01742 tolB translocation pr 99.6 6.9E-14 1.5E-18 110.0 15.4 148 1-157 209-365 (429)
176 KOG2106 Uncharacterized conser 99.6 2.4E-13 5.2E-18 103.6 17.0 150 1-155 252-479 (626)
177 KOG2445 Nuclear pore complex c 99.6 2.3E-13 4.9E-18 97.9 15.0 144 7-153 73-318 (361)
178 KOG1524 WD40 repeat-containing 99.6 3.5E-14 7.5E-19 108.9 11.3 127 2-134 111-238 (737)
179 PRK02889 tolB translocation pr 99.6 4.7E-13 1E-17 105.2 17.5 153 2-158 202-365 (427)
180 KOG0307 Vesicle coat complex C 99.6 1.1E-14 2.3E-19 119.7 8.1 154 1-156 167-330 (1049)
181 KOG0974 WD-repeat protein WDR6 99.5 9.4E-14 2E-18 113.3 12.6 154 3-160 141-295 (967)
182 KOG1310 WD40 repeat protein [G 99.5 3.9E-14 8.4E-19 109.0 9.2 155 1-156 56-234 (758)
183 KOG1539 WD repeat protein [Gen 99.5 5.1E-13 1.1E-17 107.0 15.8 143 8-153 173-318 (910)
184 PRK01742 tolB translocation pr 99.5 2.3E-13 5E-18 107.1 13.9 144 1-153 253-401 (429)
185 KOG4227 WD40 repeat protein [G 99.5 2.6E-13 5.5E-18 100.8 13.2 155 1-156 62-228 (609)
186 COG2319 FOG: WD40 repeat [Gene 99.5 1.7E-12 3.7E-17 100.2 18.7 150 4-157 119-275 (466)
187 KOG1538 Uncharacterized conser 99.5 4.1E-14 9E-19 111.2 9.3 143 1-152 18-161 (1081)
188 KOG0650 WD40 repeat nucleolar 99.5 2.6E-13 5.7E-18 105.2 13.4 149 2-155 407-639 (733)
189 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-13 2.5E-18 106.0 11.0 150 5-156 183-365 (636)
190 KOG4378 Nuclear protein COP1 [ 99.5 1.8E-13 3.9E-18 104.2 11.9 131 1-135 170-305 (673)
191 PRK11028 6-phosphogluconolacto 99.5 2.6E-12 5.5E-17 97.9 17.8 151 1-154 40-206 (330)
192 KOG4328 WD40 protein [Function 99.5 2.9E-13 6.4E-18 101.8 12.2 153 2-156 286-453 (498)
193 KOG0649 WD40 repeat protein [G 99.5 3.4E-12 7.3E-17 89.4 16.4 146 3-156 122-277 (325)
194 PRK05137 tolB translocation pr 99.5 1.8E-12 3.8E-17 102.3 17.1 149 2-156 208-369 (435)
195 KOG1310 WD40 repeat protein [G 99.5 9.4E-14 2E-18 106.9 9.1 125 30-157 43-182 (758)
196 PRK11028 6-phosphogluconolacto 99.5 1.9E-12 4.2E-17 98.6 16.2 149 1-153 131-304 (330)
197 KOG1523 Actin-related protein 99.5 4.6E-13 9.9E-18 96.8 11.4 154 1-157 61-240 (361)
198 PRK03629 tolB translocation pr 99.5 2.9E-12 6.2E-17 100.8 16.7 150 2-156 249-409 (429)
199 KOG1063 RNA polymerase II elon 99.5 2.3E-13 5.1E-18 106.9 10.1 121 32-155 520-650 (764)
200 KOG2110 Uncharacterized conser 99.5 1.4E-11 3.1E-16 90.7 18.6 151 2-155 134-332 (391)
201 PRK03629 tolB translocation pr 99.5 6.3E-12 1.4E-16 98.9 17.2 151 1-157 204-367 (429)
202 PRK04922 tolB translocation pr 99.5 7.5E-12 1.6E-16 98.7 17.3 152 1-158 209-373 (433)
203 KOG1272 WD40-repeat-containing 99.5 2.1E-13 4.5E-18 103.0 7.7 145 1-151 215-360 (545)
204 KOG0642 Cell-cycle nuclear pro 99.5 4.1E-13 8.9E-18 103.3 9.4 124 32-157 289-430 (577)
205 PF08662 eIF2A: Eukaryotic tra 99.5 2.9E-12 6.2E-17 90.1 13.0 110 1-118 65-186 (194)
206 KOG1009 Chromatin assembly com 99.5 1.4E-12 3E-17 96.9 11.7 121 37-159 13-159 (434)
207 KOG1517 Guanine nucleotide bin 99.5 3.3E-12 7.3E-17 105.0 14.8 155 2-158 1172-1338(1387)
208 TIGR02800 propeller_TolB tol-p 99.5 1E-11 2.2E-16 97.5 17.2 149 2-156 196-357 (417)
209 KOG1963 WD40 repeat protein [G 99.4 9.2E-12 2E-16 100.3 16.2 153 2-158 167-327 (792)
210 KOG1524 WD40 repeat-containing 99.4 1.5E-12 3.3E-17 100.1 10.8 143 8-156 76-219 (737)
211 PRK04922 tolB translocation pr 99.4 1.4E-11 3.1E-16 97.1 16.4 148 1-155 253-413 (433)
212 KOG1587 Cytoplasmic dynein int 99.4 4.5E-12 9.7E-17 100.8 12.9 157 2-160 249-479 (555)
213 KOG2139 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 91.2 13.8 152 1-155 201-385 (445)
214 KOG0644 Uncharacterized conser 99.4 1.5E-13 3.3E-18 110.2 3.9 115 32-153 185-300 (1113)
215 KOG1517 Guanine nucleotide bin 99.4 6.5E-12 1.4E-16 103.4 13.2 148 6-156 1220-1384(1387)
216 KOG1538 Uncharacterized conser 99.4 1.9E-11 4.2E-16 96.5 15.3 148 1-154 138-294 (1081)
217 PRK01029 tolB translocation pr 99.4 3.9E-11 8.5E-16 94.3 17.2 153 2-157 237-407 (428)
218 KOG2139 WD40 repeat protein [G 99.4 9E-12 2E-16 91.7 12.6 150 1-153 104-268 (445)
219 PF02239 Cytochrom_D1: Cytochr 99.4 1.1E-10 2.3E-15 89.9 19.0 151 2-157 43-206 (369)
220 PRK02889 tolB translocation pr 99.4 2E-11 4.4E-16 96.0 15.1 148 1-153 245-403 (427)
221 KOG3881 Uncharacterized conser 99.4 5.5E-12 1.2E-16 93.4 10.4 132 2-136 209-344 (412)
222 PRK05137 tolB translocation pr 99.4 5.5E-11 1.2E-15 93.9 16.5 149 2-157 252-416 (435)
223 KOG1240 Protein kinase contain 99.4 4.1E-11 8.9E-16 99.9 16.1 157 4-160 1058-1232(1431)
224 KOG1963 WD40 repeat protein [G 99.4 2.7E-11 5.9E-16 97.6 14.6 154 2-158 212-380 (792)
225 PRK00178 tolB translocation pr 99.4 8.4E-11 1.8E-15 92.8 17.3 150 2-157 205-367 (430)
226 KOG0644 Uncharacterized conser 99.4 8.4E-13 1.8E-17 106.1 5.7 151 2-159 197-432 (1113)
227 KOG0771 Prolactin regulatory e 99.4 7.6E-12 1.6E-16 93.3 10.1 117 41-160 148-318 (398)
228 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 94.5 12.6 149 10-160 148-309 (703)
229 PRK04792 tolB translocation pr 99.3 1.3E-10 2.8E-15 92.0 17.2 150 2-157 224-386 (448)
230 KOG2315 Predicted translation 99.3 1.4E-10 3E-15 89.7 16.3 130 17-155 251-392 (566)
231 KOG2321 WD40 repeat protein [G 99.3 5.7E-11 1.2E-15 92.2 11.9 154 2-159 182-349 (703)
232 KOG4497 Uncharacterized conser 99.3 2.1E-10 4.5E-15 83.8 14.0 148 2-154 55-241 (447)
233 KOG4227 WD40 repeat protein [G 99.3 7.1E-11 1.5E-15 88.1 11.9 126 32-157 51-183 (609)
234 KOG0290 Conserved WD40 repeat- 99.3 1.1E-10 2.5E-15 83.7 11.6 145 1-149 202-361 (364)
235 KOG2111 Uncharacterized conser 99.3 7.5E-10 1.6E-14 80.4 15.7 97 14-111 156-257 (346)
236 KOG1587 Cytoplasmic dynein int 99.3 1.3E-10 2.8E-15 92.6 12.7 155 2-158 354-521 (555)
237 PRK01029 tolB translocation pr 99.3 8.4E-10 1.8E-14 86.8 16.7 155 2-158 191-364 (428)
238 KOG3914 WD repeat protein WDR4 99.2 3.3E-10 7.2E-15 84.4 13.3 157 2-162 69-232 (390)
239 KOG0280 Uncharacterized conser 99.2 1.3E-10 2.8E-15 83.5 10.6 152 1-155 127-286 (339)
240 PF02239 Cytochrom_D1: Cytochr 99.2 2.6E-09 5.7E-14 82.3 18.6 145 8-155 6-160 (369)
241 KOG4547 WD40 repeat-containing 99.2 1E-09 2.2E-14 85.3 16.2 148 6-158 69-225 (541)
242 KOG0974 WD-repeat protein WDR6 99.2 5.6E-10 1.2E-14 91.8 15.3 145 6-155 98-248 (967)
243 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.8E-14 83.5 16.3 154 4-161 2-180 (541)
244 KOG0280 Uncharacterized conser 99.2 1.8E-09 3.9E-14 77.7 14.6 146 10-157 88-245 (339)
245 PRK00178 tolB translocation pr 99.2 1.9E-09 4.2E-14 85.1 16.4 147 2-155 249-408 (430)
246 TIGR02800 propeller_TolB tol-p 99.2 2.2E-09 4.8E-14 84.4 16.6 147 1-154 239-398 (417)
247 PF15492 Nbas_N: Neuroblastoma 99.2 1.8E-08 3.9E-13 72.5 19.4 163 1-164 49-270 (282)
248 PRK04792 tolB translocation pr 99.2 2.2E-09 4.7E-14 85.1 16.1 147 2-155 268-427 (448)
249 COG4946 Uncharacterized protei 99.2 1.4E-08 3E-13 77.8 18.2 144 6-156 331-480 (668)
250 PF10282 Lactonase: Lactonase, 99.1 1.9E-08 4.1E-13 77.2 19.1 151 1-152 149-321 (345)
251 KOG0322 G-protein beta subunit 99.1 8.7E-11 1.9E-15 83.2 4.6 65 2-66 258-322 (323)
252 PRK04043 tolB translocation pr 99.1 1.8E-08 3.9E-13 79.0 17.7 148 2-157 194-361 (419)
253 KOG2695 WD40 repeat protein [G 99.1 1.3E-09 2.8E-14 80.1 9.5 146 11-160 228-383 (425)
254 KOG1064 RAVE (regulator of V-A 99.1 8.9E-10 1.9E-14 95.4 9.2 154 4-163 2217-2376(2439)
255 PF10282 Lactonase: Lactonase, 99.1 1.2E-07 2.7E-12 72.8 20.1 153 1-153 42-222 (345)
256 KOG1064 RAVE (regulator of V-A 99.0 5.8E-10 1.3E-14 96.4 7.7 147 1-162 2257-2407(2439)
257 PLN02919 haloacid dehalogenase 99.0 5E-08 1.1E-12 84.4 19.4 156 1-157 688-892 (1057)
258 KOG4497 Uncharacterized conser 99.0 2.4E-09 5.2E-14 78.4 8.8 135 2-142 15-152 (447)
259 KOG1354 Serine/threonine prote 99.0 9.6E-09 2.1E-13 75.6 11.7 157 1-160 170-366 (433)
260 COG2706 3-carboxymuconate cycl 99.0 1.2E-07 2.5E-12 70.3 17.3 154 1-155 45-223 (346)
261 PF00400 WD40: WD domain, G-be 99.0 2.3E-09 5E-14 55.0 5.8 39 112-151 1-39 (39)
262 KOG2695 WD40 repeat protein [G 99.0 3.1E-09 6.8E-14 78.2 8.2 128 2-132 259-401 (425)
263 PF00400 WD40: WD domain, G-be 99.0 2.9E-09 6.3E-14 54.6 5.9 38 28-65 2-39 (39)
264 KOG1409 Uncharacterized conser 99.0 1.9E-08 4.1E-13 74.0 11.7 97 13-110 171-270 (404)
265 KOG4190 Uncharacterized conser 98.9 1E-08 2.2E-13 80.1 9.9 151 6-159 746-912 (1034)
266 COG4946 Uncharacterized protei 98.9 1.2E-07 2.7E-12 72.8 15.4 134 4-142 368-507 (668)
267 PRK04043 tolB translocation pr 98.9 1.9E-07 4.1E-12 73.3 16.4 146 2-155 239-402 (419)
268 KOG1240 Protein kinase contain 98.9 6.8E-08 1.5E-12 81.4 14.3 162 2-164 1105-1284(1431)
269 KOG1334 WD40 repeat protein [G 98.9 2.2E-09 4.7E-14 82.1 5.2 149 2-152 288-465 (559)
270 KOG2041 WD40 repeat protein [G 98.9 9.4E-09 2E-13 82.4 8.8 151 1-154 20-187 (1189)
271 KOG4532 WD40-like repeat conta 98.9 3.7E-07 8E-12 65.4 15.3 148 10-158 131-287 (344)
272 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.3E-06 2.8E-11 66.6 19.3 156 1-159 110-336 (352)
273 KOG3914 WD repeat protein WDR4 98.9 1.1E-08 2.4E-13 76.5 8.0 100 17-118 132-231 (390)
274 KOG1912 WD40 repeat protein [G 98.9 1.8E-07 4E-12 75.7 15.1 149 2-155 22-188 (1062)
275 KOG1334 WD40 repeat protein [G 98.8 1.2E-08 2.7E-13 78.1 7.2 157 1-158 148-317 (559)
276 COG2706 3-carboxymuconate cycl 98.8 1.5E-06 3.3E-11 64.5 17.8 150 2-153 151-321 (346)
277 KOG2444 WD40 repeat protein [G 98.8 4.8E-08 1E-12 68.3 8.9 111 48-159 69-183 (238)
278 KOG4714 Nucleoporin [Nuclear s 98.8 2.3E-08 5.1E-13 71.0 7.0 145 7-154 101-255 (319)
279 KOG1354 Serine/threonine prote 98.8 1.2E-07 2.6E-12 70.0 10.9 150 1-153 90-301 (433)
280 KOG4714 Nucleoporin [Nuclear s 98.8 4.6E-08 1E-12 69.6 8.2 112 38-151 180-316 (319)
281 KOG1409 Uncharacterized conser 98.8 2.8E-07 6.1E-12 68.0 12.3 160 2-163 75-280 (404)
282 KOG1275 PAB-dependent poly(A) 98.8 1.8E-07 3.8E-12 76.9 12.1 142 5-151 185-340 (1118)
283 KOG4532 WD40-like repeat conta 98.7 1.2E-06 2.5E-11 62.9 13.6 147 8-158 85-238 (344)
284 KOG2314 Translation initiation 98.7 2E-07 4.4E-12 72.8 9.5 135 1-141 216-364 (698)
285 PF07433 DUF1513: Protein of u 98.7 9.2E-06 2E-10 60.2 17.4 155 2-160 57-254 (305)
286 COG5354 Uncharacterized protei 98.6 2.2E-06 4.8E-11 66.4 14.0 148 1-156 228-398 (561)
287 PLN02919 haloacid dehalogenase 98.6 1.4E-05 3.1E-10 69.6 19.9 154 1-157 629-837 (1057)
288 KOG2066 Vacuolar assembly/sort 98.6 2.1E-06 4.5E-11 69.9 13.3 140 6-153 82-233 (846)
289 PF08450 SGL: SMP-30/Gluconola 98.6 1.9E-05 4.1E-10 57.8 17.1 136 1-141 91-243 (246)
290 PF11768 DUF3312: Protein of u 98.6 7.7E-06 1.7E-10 64.7 15.5 76 80-158 258-334 (545)
291 KOG0309 Conserved WD40 repeat- 98.6 2.5E-07 5.3E-12 74.7 7.3 153 2-156 74-235 (1081)
292 TIGR03300 assembly_YfgL outer 98.5 8.2E-06 1.8E-10 63.5 15.0 135 7-150 241-376 (377)
293 COG0823 TolB Periplasmic compo 98.5 4.2E-06 9.1E-11 65.7 13.0 149 2-156 199-361 (425)
294 PF11768 DUF3312: Protein of u 98.5 3.2E-06 7E-11 66.7 12.0 73 35-111 257-330 (545)
295 KOG0309 Conserved WD40 repeat- 98.5 4.7E-07 1E-11 73.1 7.4 152 1-153 120-277 (1081)
296 PF15492 Nbas_N: Neuroblastoma 98.5 4.8E-05 1E-09 55.2 16.7 155 1-158 3-193 (282)
297 KOG2066 Vacuolar assembly/sort 98.5 5.6E-06 1.2E-10 67.5 13.1 137 7-159 49-193 (846)
298 TIGR02658 TTQ_MADH_Hv methylam 98.5 3.6E-05 7.8E-10 58.8 17.0 101 17-121 27-147 (352)
299 PF04762 IKI3: IKI3 family; I 98.5 1.2E-05 2.5E-10 69.1 15.7 150 1-155 126-335 (928)
300 PF13360 PQQ_2: PQQ-like domai 98.5 3.8E-05 8.2E-10 55.7 16.5 148 5-156 34-194 (238)
301 KOG1832 HIV-1 Vpr-binding prot 98.5 9.2E-08 2E-12 78.6 2.8 145 1-155 1107-1257(1516)
302 KOG2315 Predicted translation 98.5 3.1E-06 6.7E-11 66.2 10.9 124 1-133 276-410 (566)
303 KOG1645 RING-finger-containing 98.5 5.4E-06 1.2E-10 62.6 11.7 76 1-77 199-276 (463)
304 KOG0882 Cyclophilin-related pe 98.5 4.2E-06 9.1E-11 64.1 11.2 159 2-161 60-239 (558)
305 PF13360 PQQ_2: PQQ-like domai 98.4 3.3E-05 7.2E-10 56.0 15.3 139 16-158 2-145 (238)
306 COG0823 TolB Periplasmic compo 98.4 4.3E-06 9.4E-11 65.6 11.1 137 2-142 244-388 (425)
307 PRK02888 nitrous-oxide reducta 98.4 2.7E-05 5.8E-10 63.0 15.1 147 3-154 200-405 (635)
308 PF04762 IKI3: IKI3 family; I 98.4 1.5E-05 3.3E-10 68.4 14.5 147 1-152 215-378 (928)
309 COG5170 CDC55 Serine/threonine 98.4 5.2E-06 1.1E-10 60.9 10.1 118 36-156 171-312 (460)
310 PF07433 DUF1513: Protein of u 98.4 9.7E-05 2.1E-09 54.9 16.7 141 1-143 10-182 (305)
311 TIGR03300 assembly_YfgL outer 98.4 6.3E-05 1.4E-09 58.6 16.7 144 6-157 64-212 (377)
312 PF04053 Coatomer_WDAD: Coatom 98.4 4.7E-05 1E-09 60.2 15.7 136 1-153 38-173 (443)
313 PRK02888 nitrous-oxide reducta 98.4 3.4E-05 7.4E-10 62.4 14.8 94 16-111 295-405 (635)
314 PF08553 VID27: VID27 cytoplas 98.3 3.5E-05 7.6E-10 64.4 15.0 144 7-152 493-646 (794)
315 PF08450 SGL: SMP-30/Gluconola 98.3 0.00032 7E-09 51.3 18.8 146 2-154 46-214 (246)
316 KOG2314 Translation initiation 98.3 2E-05 4.4E-10 62.0 11.8 119 36-156 444-576 (698)
317 COG5170 CDC55 Serine/threonine 98.3 1.6E-05 3.5E-10 58.5 10.0 153 2-157 179-371 (460)
318 KOG2041 WD40 repeat protein [G 98.2 1.8E-05 3.9E-10 64.2 10.7 117 37-154 14-146 (1189)
319 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00029 6.3E-09 44.3 14.3 101 40-149 2-110 (111)
320 KOG4190 Uncharacterized conser 98.2 2.7E-06 5.9E-11 66.9 6.0 124 30-156 728-862 (1034)
321 KOG4640 Anaphase-promoting com 98.2 6.2E-06 1.4E-10 65.6 7.3 87 1-89 26-114 (665)
322 KOG2114 Vacuolar assembly/sort 98.2 0.00014 3E-09 60.2 14.3 154 2-156 30-204 (933)
323 KOG3617 WD40 and TPR repeat-co 98.2 7E-05 1.5E-09 62.1 12.6 67 1-67 65-131 (1416)
324 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00079 1.7E-08 48.7 16.2 138 8-149 24-161 (354)
325 COG3391 Uncharacterized conser 98.1 0.00097 2.1E-08 52.1 18.1 153 1-158 121-288 (381)
326 PRK11138 outer membrane biogen 98.1 0.00061 1.3E-08 53.5 16.5 137 7-152 256-393 (394)
327 KOG2395 Protein involved in va 98.1 0.00017 3.6E-09 56.9 12.7 145 6-153 344-500 (644)
328 KOG1912 WD40 repeat protein [G 98.0 4.6E-05 9.9E-10 62.4 8.9 103 9-111 439-552 (1062)
329 KOG3621 WD40 repeat-containing 98.0 4.3E-05 9.4E-10 61.7 8.6 109 3-111 41-155 (726)
330 KOG3621 WD40 repeat-containing 98.0 9E-05 1.9E-09 59.9 10.2 115 38-154 34-155 (726)
331 smart00320 WD40 WD40 repeats. 98.0 3E-05 6.5E-10 38.2 5.2 38 28-65 3-40 (40)
332 smart00320 WD40 WD40 repeats. 98.0 3.3E-05 7.1E-10 38.1 5.3 38 113-151 3-40 (40)
333 KOG1275 PAB-dependent poly(A) 98.0 0.00014 3E-09 60.6 11.2 139 7-152 147-295 (1118)
334 KOG1008 Uncharacterized conser 97.9 2.4E-06 5.2E-11 68.1 0.1 150 1-154 108-276 (783)
335 KOG4640 Anaphase-promoting com 97.9 8.2E-05 1.8E-09 59.5 8.4 94 37-133 20-115 (665)
336 KOG2114 Vacuolar assembly/sort 97.9 0.0024 5.1E-08 53.3 16.6 151 8-160 78-250 (933)
337 PRK11138 outer membrane biogen 97.9 0.002 4.3E-08 50.6 16.0 142 7-157 69-227 (394)
338 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.00053 1.1E-08 53.0 12.5 92 4-99 1-119 (353)
339 KOG1645 RING-finger-containing 97.9 8.2E-05 1.8E-09 56.5 7.6 82 73-157 186-270 (463)
340 COG3391 Uncharacterized conser 97.8 0.0062 1.3E-07 47.7 17.1 149 2-156 80-242 (381)
341 KOG1920 IkappaB kinase complex 97.8 0.0038 8.3E-08 53.9 16.3 149 3-155 76-276 (1265)
342 PF03178 CPSF_A: CPSF A subuni 97.7 0.011 2.4E-07 45.1 17.6 141 7-153 42-202 (321)
343 PRK13616 lipoprotein LpqB; Pro 97.7 0.0016 3.5E-08 53.6 13.6 144 2-155 356-529 (591)
344 COG5354 Uncharacterized protei 97.7 0.00057 1.2E-08 53.5 9.7 125 21-152 16-159 (561)
345 KOG1832 HIV-1 Vpr-binding prot 97.6 8.3E-05 1.8E-09 62.0 4.9 123 31-160 1095-1221(1516)
346 COG3386 Gluconolactonase [Carb 97.6 0.0058 1.3E-07 46.2 14.3 137 3-142 118-274 (307)
347 PF02897 Peptidase_S9_N: Proly 97.6 0.009 1.9E-07 47.2 16.1 153 2-157 130-313 (414)
348 KOG1920 IkappaB kinase complex 97.6 0.0022 4.7E-08 55.3 12.4 110 1-112 201-324 (1265)
349 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0058 1.3E-07 44.4 12.6 103 7-111 63-166 (354)
350 KOG3617 WD40 and TPR repeat-co 97.6 0.00035 7.5E-09 58.2 7.2 109 41-154 19-132 (1416)
351 PF00780 CNH: CNH domain; Int 97.5 0.022 4.7E-07 42.4 18.0 143 4-158 4-170 (275)
352 KOG0882 Cyclophilin-related pe 97.5 0.00083 1.8E-08 52.0 7.9 146 6-154 19-175 (558)
353 PF04053 Coatomer_WDAD: Coatom 97.4 0.027 6E-07 44.9 16.0 136 7-154 117-263 (443)
354 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.013 2.9E-07 36.9 12.9 89 8-105 16-109 (111)
355 PRK13616 lipoprotein LpqB; Pro 97.4 0.0086 1.9E-07 49.4 13.2 104 38-149 350-472 (591)
356 PF03178 CPSF_A: CPSF A subuni 97.3 0.025 5.4E-07 43.2 14.9 141 7-150 98-262 (321)
357 PF12234 Rav1p_C: RAVE protein 97.3 0.016 3.6E-07 47.8 14.3 111 38-152 30-155 (631)
358 KOG2079 Vacuolar assembly/sort 97.3 0.0023 4.9E-08 54.7 8.9 102 48-152 98-202 (1206)
359 COG3490 Uncharacterized protei 97.3 0.02 4.3E-07 42.3 12.6 155 2-159 120-316 (366)
360 cd00216 PQQ_DH Dehydrogenases 97.2 0.049 1.1E-06 44.2 16.1 147 8-158 111-324 (488)
361 KOG1008 Uncharacterized conser 97.2 8.6E-05 1.9E-09 59.6 0.4 140 8-151 71-223 (783)
362 PF08596 Lgl_C: Lethal giant l 97.2 0.049 1.1E-06 42.8 15.3 153 6-160 96-297 (395)
363 cd00216 PQQ_DH Dehydrogenases 97.2 0.036 7.9E-07 44.9 15.0 149 7-158 61-269 (488)
364 KOG2079 Vacuolar assembly/sort 97.2 0.002 4.4E-08 54.9 7.5 94 8-103 100-198 (1206)
365 PF06977 SdiA-regulated: SdiA- 97.1 0.069 1.5E-06 39.2 17.9 150 1-152 27-200 (248)
366 PF15390 DUF4613: Domain of un 97.1 0.033 7E-07 45.2 12.9 113 38-152 57-185 (671)
367 PF14583 Pectate_lyase22: Olig 97.0 0.06 1.3E-06 41.8 13.9 137 2-142 42-206 (386)
368 PF04841 Vps16_N: Vps16, N-ter 97.0 0.066 1.4E-06 42.4 14.7 28 125-152 218-245 (410)
369 PF06433 Me-amine-dh_H: Methyl 97.0 0.093 2E-06 40.0 16.5 151 2-156 42-216 (342)
370 KOG2444 WD40 repeat protein [G 97.0 0.0033 7.2E-08 44.6 6.5 101 7-109 70-176 (238)
371 PF08553 VID27: VID27 cytoplas 97.0 0.01 2.2E-07 50.3 10.3 97 9-109 544-646 (794)
372 COG3204 Uncharacterized protei 97.0 0.084 1.8E-06 39.2 14.6 154 1-155 91-265 (316)
373 COG3490 Uncharacterized protei 97.0 0.069 1.5E-06 39.6 13.2 142 1-143 73-245 (366)
374 TIGR02604 Piru_Ver_Nterm putat 97.0 0.092 2E-06 40.9 15.0 137 1-142 19-202 (367)
375 PF06433 Me-amine-dh_H: Methyl 96.9 0.11 2.5E-06 39.5 16.9 55 103-159 270-326 (342)
376 COG5167 VID27 Protein involved 96.9 0.048 1E-06 43.6 12.6 144 6-154 478-633 (776)
377 PF06977 SdiA-regulated: SdiA- 96.9 0.098 2.1E-06 38.4 16.7 147 2-150 71-247 (248)
378 PF14870 PSII_BNR: Photosynthe 96.9 0.12 2.6E-06 39.1 15.5 143 3-150 152-301 (302)
379 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0055 1.2E-07 32.4 5.1 28 125-152 13-40 (47)
380 PF08596 Lgl_C: Lethal giant l 96.8 0.07 1.5E-06 42.0 13.1 114 39-153 3-173 (395)
381 KOG4499 Ca2+-binding protein R 96.8 0.11 2.4E-06 37.4 12.5 128 3-133 116-263 (310)
382 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0071 1.5E-07 32.0 4.9 31 37-67 11-41 (47)
383 PF10647 Gmad1: Lipoprotein Lp 96.7 0.14 3.1E-06 37.7 15.4 139 2-144 30-186 (253)
384 PHA02713 hypothetical protein; 96.7 0.083 1.8E-06 43.6 13.4 144 6-156 351-536 (557)
385 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.11 2.4E-06 40.3 12.6 140 1-142 189-346 (353)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.31 6.7E-06 40.1 15.2 32 91-122 471-502 (527)
387 PF02897 Peptidase_S9_N: Proly 96.5 0.13 2.8E-06 40.7 12.7 111 41-155 127-262 (414)
388 COG3386 Gluconolactonase [Carb 96.4 0.3 6.6E-06 37.1 14.7 146 2-154 31-194 (307)
389 PHA02713 hypothetical protein; 96.3 0.31 6.8E-06 40.3 14.5 144 6-154 303-489 (557)
390 PHA03098 kelch-like protein; P 96.3 0.32 6.9E-06 40.0 14.3 142 6-155 342-513 (534)
391 PF10313 DUF2415: Uncharacteri 96.3 0.022 4.7E-07 29.3 4.8 31 125-155 2-35 (43)
392 PRK10115 protease 2; Provision 96.2 0.57 1.2E-05 39.9 15.8 104 2-109 133-254 (686)
393 KOG3630 Nuclear pore complex, 96.2 0.026 5.6E-07 49.0 7.3 137 3-142 108-262 (1405)
394 COG3204 Uncharacterized protei 96.1 0.32 6.8E-06 36.3 11.8 119 34-153 82-210 (316)
395 PF05096 Glu_cyclase_2: Glutam 95.9 0.46 1E-05 35.1 17.6 150 3-158 52-208 (264)
396 KOG4441 Proteins containing BT 95.9 0.67 1.4E-05 38.5 14.2 145 6-155 332-501 (571)
397 PHA03098 kelch-like protein; P 95.8 0.8 1.7E-05 37.6 14.7 144 7-155 295-466 (534)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 0.28 6E-06 38.8 11.2 85 35-121 305-409 (415)
399 PF07569 Hira: TUP1-like enhan 95.8 0.16 3.4E-06 36.6 9.1 65 88-153 18-95 (219)
400 PF14870 PSII_BNR: Photosynthe 95.7 0.63 1.4E-05 35.3 16.3 108 36-147 143-255 (302)
401 PF10647 Gmad1: Lipoprotein Lp 95.7 0.58 1.3E-05 34.5 13.7 109 39-152 25-143 (253)
402 PF05694 SBP56: 56kDa selenium 95.7 0.7 1.5E-05 36.6 12.7 95 16-111 221-343 (461)
403 PF14583 Pectate_lyase22: Olig 95.6 0.81 1.8E-05 35.7 13.2 122 18-144 169-303 (386)
404 PF05694 SBP56: 56kDa selenium 95.5 0.96 2.1E-05 35.9 16.7 150 5-156 139-345 (461)
405 PF07569 Hira: TUP1-like enhan 95.4 0.16 3.4E-06 36.6 8.0 71 4-77 19-103 (219)
406 KOG2395 Protein involved in va 95.3 0.22 4.8E-06 40.1 8.9 95 11-109 398-499 (644)
407 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 1.6 3.4E-05 36.0 16.9 149 8-158 121-338 (527)
408 KOG2247 WD40 repeat-containing 95.1 0.0033 7.1E-08 49.5 -1.4 132 2-139 41-175 (615)
409 PF12234 Rav1p_C: RAVE protein 95.1 0.9 1.9E-05 38.0 12.2 96 11-108 45-154 (631)
410 PHA02790 Kelch-like protein; P 95.0 1.6 3.4E-05 35.5 14.8 139 6-154 318-471 (480)
411 PF10168 Nup88: Nuclear pore c 95.0 0.29 6.2E-06 41.6 9.5 74 1-75 90-187 (717)
412 KOG2377 Uncharacterized conser 94.9 1.2 2.6E-05 35.6 11.8 133 6-141 32-171 (657)
413 COG4590 ABC-type uncharacteriz 94.9 0.24 5.2E-06 39.3 8.1 153 3-160 228-393 (733)
414 KOG1916 Nuclear protein, conta 94.9 0.087 1.9E-06 45.0 6.0 139 17-158 153-328 (1283)
415 PF10313 DUF2415: Uncharacteri 94.7 0.21 4.5E-06 25.7 5.1 31 38-68 1-34 (43)
416 PF00780 CNH: CNH domain; Int 94.5 0.98 2.1E-05 33.5 10.6 101 47-155 5-124 (275)
417 PF05096 Glu_cyclase_2: Glutam 94.4 1.5 3.2E-05 32.5 14.0 112 40-158 47-162 (264)
418 PRK13684 Ycf48-like protein; P 94.4 1.8 3.8E-05 33.4 15.1 145 2-152 179-330 (334)
419 PF10168 Nup88: Nuclear pore c 94.4 2.9 6.3E-05 35.8 14.5 73 83-156 86-182 (717)
420 PF08728 CRT10: CRT10; InterP 94.4 2.8 6.1E-05 35.6 15.4 141 7-152 49-245 (717)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.61 1.3E-05 37.0 9.3 75 84-158 310-403 (415)
422 KOG3630 Nuclear pore complex, 94.1 0.72 1.6E-05 40.7 9.9 115 38-154 101-229 (1405)
423 KOG1897 Damage-specific DNA bi 94.1 3.7 8E-05 36.0 13.7 135 18-156 751-901 (1096)
424 TIGR03074 PQQ_membr_DH membran 93.7 3.9 8.5E-05 35.4 13.6 110 7-119 194-353 (764)
425 KOG4441 Proteins containing BT 93.7 3.6 7.8E-05 34.4 14.2 144 7-156 285-455 (571)
426 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.48 1.1E-05 23.8 5.7 31 5-35 1-32 (42)
427 PF08801 Nucleoporin_N: Nup133 93.5 3.2 6.9E-05 33.1 13.2 30 125-154 191-220 (422)
428 PF15390 DUF4613: Domain of un 93.5 1.3 2.9E-05 36.4 9.8 108 1-109 62-185 (671)
429 PF05935 Arylsulfotrans: Aryls 93.3 3.8 8.2E-05 33.4 14.0 135 16-157 127-305 (477)
430 PF12657 TFIIIC_delta: Transcr 93.2 0.7 1.5E-05 31.9 7.2 29 39-67 87-121 (173)
431 PF10214 Rrn6: RNA polymerase 93.1 5.1 0.00011 34.8 13.5 115 37-154 145-277 (765)
432 KOG1900 Nuclear pore complex, 93.1 2.9 6.2E-05 37.7 11.8 139 14-154 96-273 (1311)
433 PF07995 GSDH: Glucose / Sorbo 93.1 2.4 5.1E-05 32.7 10.6 46 1-48 7-59 (331)
434 PF11715 Nup160: Nucleoporin N 92.9 1.9 4.1E-05 35.6 10.4 72 47-118 156-256 (547)
435 KOG4460 Nuclear pore complex, 92.8 2.7 5.8E-05 34.3 10.5 73 84-156 106-201 (741)
436 PF14727 PHTB1_N: PTHB1 N-term 92.7 4.2 9.2E-05 32.4 15.0 146 6-156 36-207 (418)
437 PF08728 CRT10: CRT10; InterP 92.7 1.6 3.5E-05 37.0 9.6 101 7-109 114-245 (717)
438 KOG4499 Ca2+-binding protein R 92.4 0.93 2E-05 32.9 6.9 46 2-47 218-263 (310)
439 TIGR02276 beta_rpt_yvtn 40-res 92.2 0.8 1.7E-05 22.9 5.3 32 90-121 1-33 (42)
440 PF11715 Nup160: Nucleoporin N 92.0 1.2 2.5E-05 36.9 8.2 68 90-157 156-252 (547)
441 TIGR03606 non_repeat_PQQ dehyd 91.8 6 0.00013 32.0 11.5 49 1-49 35-90 (454)
442 PF07676 PD40: WD40-like Beta 91.4 1 2.2E-05 22.3 4.7 31 34-64 5-38 (39)
443 TIGR03074 PQQ_membr_DH membran 91.3 9.2 0.0002 33.2 17.5 153 7-161 260-485 (764)
444 PLN00033 photosystem II stabil 90.9 6.9 0.00015 31.1 17.0 108 37-150 280-396 (398)
445 PF07995 GSDH: Glucose / Sorbo 90.8 6.2 0.00013 30.4 11.5 103 39-143 3-133 (331)
446 PF07676 PD40: WD40-like Beta 90.8 1.2 2.5E-05 22.0 5.5 26 125-150 10-38 (39)
447 PF12657 TFIIIC_delta: Transcr 90.8 4 8.7E-05 28.1 8.9 32 125-156 87-124 (173)
448 KOG1916 Nuclear protein, conta 90.7 0.28 6.2E-06 42.1 3.3 108 6-115 194-328 (1283)
449 PF04841 Vps16_N: Vps16, N-ter 90.6 7.5 0.00016 31.0 14.8 58 81-138 216-274 (410)
450 PHA02790 Kelch-like protein; P 90.4 8.5 0.00019 31.4 14.1 102 7-113 272-387 (480)
451 PRK13684 Ycf48-like protein; P 89.3 8.6 0.00019 29.7 14.2 108 37-148 172-283 (334)
452 PF14781 BBS2_N: Ciliary BBSom 89.1 4.8 0.0001 26.5 11.6 110 3-117 6-132 (136)
453 TIGR02171 Fb_sc_TIGR02171 Fibr 88.9 4.8 0.0001 35.1 9.1 61 17-77 329-395 (912)
454 TIGR02604 Piru_Ver_Nterm putat 88.7 10 0.00022 29.7 11.8 102 38-142 14-142 (367)
455 KOG2377 Uncharacterized conser 88.5 3.9 8.4E-05 32.9 7.7 95 1-98 72-171 (657)
456 smart00564 PQQ beta-propeller 87.9 1.8 3.9E-05 20.3 4.3 25 9-33 8-32 (33)
457 COG1520 FOG: WD40-like repeat 87.7 12 0.00025 29.3 15.6 146 9-158 70-222 (370)
458 PF14761 HPS3_N: Hermansky-Pud 87.6 8.5 0.00018 27.6 15.1 48 8-56 29-78 (215)
459 PF01011 PQQ: PQQ enzyme repea 86.9 2.4 5.2E-05 20.9 4.1 28 94-121 2-29 (38)
460 COG4257 Vgb Streptogramin lyas 86.9 11 0.00024 28.3 13.3 149 2-155 68-220 (353)
461 PF01011 PQQ: PQQ enzyme repea 86.1 2.8 6.2E-05 20.6 4.3 27 9-35 2-28 (38)
462 KOG4460 Nuclear pore complex, 85.8 3.6 7.9E-05 33.6 6.4 67 2-68 110-199 (741)
463 PF14761 HPS3_N: Hermansky-Pud 85.7 4 8.7E-05 29.2 6.0 49 93-143 29-79 (215)
464 TIGR03548 mutarot_permut cycli 85.6 14 0.00031 28.2 15.3 64 48-113 123-197 (323)
465 PF13449 Phytase-like: Esteras 85.4 15 0.00032 28.3 14.6 98 41-140 88-231 (326)
466 KOG2280 Vacuolar assembly/sort 85.1 24 0.00052 30.4 13.1 47 19-67 66-112 (829)
467 PF12768 Rax2: Cortical protei 85.0 14 0.00031 27.8 12.4 93 16-110 15-123 (281)
468 PRK10115 protease 2; Provision 84.9 24 0.00053 30.4 18.8 148 1-151 177-342 (686)
469 COG5276 Uncharacterized conser 84.9 15 0.00032 27.9 17.9 143 7-156 96-244 (370)
470 KOG2280 Vacuolar assembly/sort 84.4 26 0.00056 30.2 11.0 48 88-135 224-271 (829)
471 PLN02193 nitrile-specifier pro 84.4 21 0.00045 29.1 16.8 145 8-156 230-413 (470)
472 TIGR03547 muta_rot_YjhT mutatr 84.2 17 0.00037 28.0 14.7 40 17-57 168-209 (346)
473 TIGR03118 PEPCTERM_chp_1 conse 83.9 17 0.00037 27.8 12.7 115 39-153 24-170 (336)
474 PF07250 Glyoxal_oxid_N: Glyox 83.8 15 0.00032 27.0 10.4 115 3-120 74-207 (243)
475 PF14781 BBS2_N: Ciliary BBSom 83.6 10 0.00022 25.0 11.7 106 44-154 5-126 (136)
476 smart00036 CNH Domain found in 83.6 13 0.00029 28.2 8.5 63 91-157 12-77 (302)
477 PF03088 Str_synth: Strictosid 82.7 8.4 0.00018 23.4 5.7 41 100-142 35-75 (89)
478 KOG3616 Selective LIM binding 82.1 4.9 0.00011 34.5 5.9 73 82-158 15-88 (1636)
479 PF07250 Glyoxal_oxid_N: Glyox 81.7 18 0.0004 26.6 9.8 132 20-155 49-199 (243)
480 KOG1898 Splicing factor 3b, su 81.4 29 0.00063 31.2 10.2 105 2-109 940-1047(1205)
481 PF02333 Phytase: Phytase; In 81.4 25 0.00054 27.8 18.4 144 5-153 66-237 (381)
482 COG5167 VID27 Protein involved 80.3 6 0.00013 32.3 5.6 60 7-67 573-632 (776)
483 TIGR03606 non_repeat_PQQ dehyd 80.0 31 0.00067 28.1 14.0 31 37-67 29-59 (454)
484 KOG1897 Damage-specific DNA bi 80.0 44 0.00096 29.9 15.4 132 16-153 806-942 (1096)
485 PF13449 Phytase-like: Esteras 79.9 25 0.00055 27.0 12.2 104 37-142 19-165 (326)
486 PF14269 Arylsulfotran_2: Aryl 79.8 12 0.00026 28.5 7.1 69 84-152 146-219 (299)
487 PLN02153 epithiospecifier prot 79.6 26 0.00056 27.0 16.9 106 7-115 86-230 (341)
488 COG5129 MAK16 Nuclear protein 79.6 1.4 3E-05 31.4 1.8 25 173-197 257-281 (303)
489 KOG1983 Tomosyn and related SN 79.3 32 0.00069 31.1 10.2 26 132-157 243-268 (993)
490 KOG3522 Predicted guanine nucl 78.6 15 0.00032 32.0 7.6 141 7-158 547-702 (925)
491 PF01731 Arylesterase: Arylest 78.2 12 0.00027 22.5 6.5 29 125-153 55-84 (86)
492 PF01436 NHL: NHL repeat; Int 78.1 5.3 0.00011 18.2 4.1 24 40-63 4-27 (28)
493 PF14269 Arylsulfotran_2: Aryl 77.4 15 0.00032 28.0 6.9 63 4-66 152-219 (299)
494 COG5290 IkappaB kinase complex 77.0 13 0.00028 32.3 6.8 92 40-135 249-348 (1243)
495 KOG3616 Selective LIM binding 76.8 11 0.00023 32.6 6.3 67 37-108 14-81 (1636)
496 PF13570 PQQ_3: PQQ-like domai 74.4 7.1 0.00015 19.3 3.2 21 134-154 20-40 (40)
497 PF11635 Med16: Mediator compl 73.8 62 0.0013 28.4 14.5 65 84-148 262-345 (753)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 73.2 42 0.0009 29.8 9.0 76 58-137 328-412 (912)
499 PF10395 Utp8: Utp8 family; I 72.4 62 0.0013 27.8 13.1 146 1-152 135-304 (670)
500 PF03088 Str_synth: Strictosid 71.4 20 0.00044 21.8 5.2 39 16-55 36-74 (89)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=2.5e-31 Score=208.04 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=148.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
..|+|+.++|++++.|+++|+|.+.+..++....+|..+|+.+.|+|.|.+|++++.|++.++|.... ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999999999999999999999999999999999999999975 578889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..+.|+ |+|+..|+++|+.|.+|++||+.+|..+..+.+|.. +|.+++|+|+|++|++|+.|+.|.+||+.++..-.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 9999999 999999999999999999999999999999999966 99999999999999999999999999999976543
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 614 ~ 614 (707)
T KOG0263|consen 614 Q 614 (707)
T ss_pred h
Confidence 3
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.5e-32 Score=198.50 Aligned_cols=159 Identities=23% Similarity=0.195 Sum_probs=146.3
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|+|. +..||+|+.||++++|++.+..++..+++|..+|..++|+|+|++|.+++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468897 56899999999999999999899999999999999999999999999999999999999986 455666788
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|+|.++++|+.|..-+|||+++|.++..+.+|.. +|.+|.|+|+|..||+|+.|++++|||++...+
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 999999999999999999999999999999999977 899999999999999999999999999998776
Q ss_pred CCCCC
Q 028806 158 GSGNN 162 (203)
Q Consensus 158 ~~~~~ 162 (203)
-....
T Consensus 380 ly~ip 384 (459)
T KOG0272|consen 380 LYTIP 384 (459)
T ss_pred ceecc
Confidence 54433
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-30 Score=190.52 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=142.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.+++|+|||+.|++|+.||+|++||..+.+.....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 469999999999999999999999999999999999999999999999999999999999999999877777889999 9
Q ss_pred CCceeEE-Eee-----CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKL-----DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |.| ..+++++++.||.|+|||+..+.++..+.+|+. +|+|+.|-.+ .+|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccc
Confidence 9999999 744 678999999999999999999999999999976 8999999655 4899999999999999877
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
+..
T Consensus 278 G~~ 280 (480)
T KOG0271|consen 278 GKL 280 (480)
T ss_pred hhH
Confidence 543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.3e-31 Score=194.81 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=148.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|+|++|++++.|.+-++||+.++..+...++|...|.+++|+|||.++++|+.|..-+|||+++ +.++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999988888899999999999999999999999999999999996 688889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ |+|+|..|++|+.|++++|||++...++.++.+|.. -|+.+.|+| .|.+|++++.|++++||..++.++-
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999976 799999999 7789999999999999999988876
Q ss_pred CCC
Q 028806 159 SGN 161 (203)
Q Consensus 159 ~~~ 161 (203)
...
T Consensus 424 ksL 426 (459)
T KOG0272|consen 424 KSL 426 (459)
T ss_pred hhh
Confidence 543
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-29 Score=176.24 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=141.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+++|++.++++.|+++++||+.+++..+.+.+|..-|.+++|+++.+.+++|+.|.+|++|++. +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~-~ 145 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHE-D 145 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEec-C
Confidence 3578999999999999999999999999999999999999999999999999999999999999986 455555543 3
Q ss_pred --CCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 --PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 --~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...|.|+ |+|+ ..+|++++.|++|++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 6789999 9997 78999999999999999999999999999976 7999999999999999999999999999988
Q ss_pred ccCCCC
Q 028806 156 LKGSGN 161 (203)
Q Consensus 156 ~~~~~~ 161 (203)
..-...
T Consensus 225 k~lysl 230 (315)
T KOG0279|consen 225 KNLYSL 230 (315)
T ss_pred ceeEec
Confidence 775443
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.5e-30 Score=200.56 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=146.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|-|-++|+++.|++.++|......+++.+.+|-+-|.|+.|+|+..++++|+.|.++++||+.+ +..++.|.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999999899999999999999999999999999999999999999975 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++|.++ |+|+|.+|++|+.||.|.+||+.+++.+..+.+|++ .|.++.|+.+|..||+++.|.+|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 999999999999999999999999999999999965 8999999999999999999999999999765544
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.6e-30 Score=185.75 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~----- 69 (203)
++|+|||+.||+|+.||+|++||..+++. ...+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 57999999999999999999999988755 467888999999999976 3456777777777777776421
Q ss_pred --------------------------------------------------------------------------------
Q 028806 70 -------------------------------------------------------------------------------- 69 (203)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (203)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
.+++..+.+ |...|..+ |+|++++|++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 011112234 56677888 999999999999999999999999999
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+.++++|-. +|+.++|+.|.++|++|+.|.++++|++++....+...
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 999999966 89999999999999999999999999999988776655
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.4e-28 Score=189.76 Aligned_cols=158 Identities=25% Similarity=0.390 Sum_probs=144.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.|++|+||++ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||+++ +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45688899999999999999999999999999999999999986 788999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.++ |++++.+|++++.|+.|++||+.++. ++..+..+... +++++.|+|++.+|++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 99999999999999999999999998 56777777553 5899999999999999999999999999977
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.....
T Consensus 367 ~~~~~ 371 (456)
T KOG0266|consen 367 KSVGT 371 (456)
T ss_pred cceee
Confidence 65433
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.8e-28 Score=189.26 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|+|+|+.+++++.++.+++|+..... ....+.+|...|..++|+|++.++++++.|+++++||+...+..++++.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777889999999999999999999999999999999655678899999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|+++ |+|+++.+++|+.|+.|++||++++++...+.+|.+ .|.+++|++++++|++++.|+.|++||+.++..
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 999999999999999999999999999999999976 899999999999999999999999999999884
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=172.24 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++.|-..++++|+.|++|+|||+.++++..++.+|...|..+++++-..+|++++.|+.|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46788888999999999999999999999999999999999999999999999999999999999974 577888899 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..|+|+ .+|.-..|++|+.|.+++|||+++...+..+.+|.. +|..+.+.|-...+++|+.|++|++||++.+...
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 9999999 899999999999999999999999999999999966 8999999998889999999999999999887643
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=167.15 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=144.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|-|.|.+|+++++|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.++++|-+.+ +.+...+.. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999974 567777888 8
Q ss_pred CCceeEE-EeeC---------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..++-++ |-|. +.++.+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 6442 25899999999999999999999999999955 89999999999999999999
Q ss_pred CcEEEEeCCCcccCCCCC
Q 028806 145 SMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~ 162 (203)
+++++||+.+.++....+
T Consensus 356 ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CcEEEEEeccceeeeccC
Confidence 999999999998876554
No 12
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=7.7e-26 Score=178.15 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|+| ++++|++|+.|++|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 47999 8899999999999999999764 3456788999999999999975 6899999999999999975 46
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe----CCCc
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~d~~ 146 (203)
.+..+.. |...|.++ |+|++.+|++++.|+.|++||+++++.+..+..|....+..+.|.+++..|++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 88999999 9999999999999999999999999999888888653455678999888877655 4789
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.8e-26 Score=160.52 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=132.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+||.+.|++|+.|.+|.+|+.-........... ...|.|+.|+|+ ..++++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 579999999999999999999998876544443333 789999999997 67899999999999999985 57778888
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |.+.++.+ ++|||.++++|+.+|.+.+||++.++.+..+... . .|.+++|+|+.-.|+.+. +..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 9 99999999 9999999999999999999999999998888665 4 799999999976666554 5569999998876
Q ss_pred cCCC
Q 028806 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 266 ~v~~ 269 (315)
T KOG0279|consen 266 VVEE 269 (315)
T ss_pred hhhh
Confidence 6543
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=179.26 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|++||||++||+|+.||.|+|||...+-+..++..|...|+.+.|+..++.+++++-||+|+.||+.. ....++|....
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999974 57777887612
Q ss_pred CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.-...|+ ..|.|..+.+|+.|. .|.+|++++|+.+-.+.+|.+ ||.+++|+|.+..|++++.|.+|++||+-..
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 2334556 688999999999875 599999999999999999955 9999999999999999999999999998655
No 15
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=171.79 Aligned_cols=161 Identities=18% Similarity=0.313 Sum_probs=146.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
.|||||++|++|+-||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999987655443 2567899999999999999999999999999985 7899
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.|..+|...|+|+ |+.++..+++++.|.++++.-+.+|++++.+++|+. -|+...|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 99974499999999 999999999999999999999999999999999976 6999999999999999999999999999
Q ss_pred CCcccCCCCCCC
Q 028806 153 DDILKGSGNNIS 164 (203)
Q Consensus 153 ~~~~~~~~~~~~ 164 (203)
.+..+-..++..
T Consensus 378 KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 378 KTTECLSTFKPL 389 (508)
T ss_pred cchhhhhhccCC
Confidence 998887766544
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=4.4e-26 Score=158.09 Aligned_cols=155 Identities=22% Similarity=0.291 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
+.|..+|+.+++|+.||+++|||++...+.+.+ .+.++|+++..+|+...|+++..+|.|++||+....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 357889999999999999999999986554444 456889999999988888888889999999886320
Q ss_pred --------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 71 --------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 71 --------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
.++..+.. |..-+..+ ++|++++|++++.|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 11222334 55555555 999999999999999999999988
Q ss_pred C-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
. +....+.+|.. .++..+|+.+++||++++.|+..++|+++.++..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 66677888854 8999999999999999999999999999988743
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=8.7e-26 Score=159.73 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=143.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.++.|.+| ..|++++.|.+..+||+.+ +....
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc-ceEEE
Confidence 379999999999999999999999854 445678899999999999874 5788999999999999985 68888
Q ss_pred eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+ |.+.|.++ ++| +++.+++|+-|...++||++.+.+.+++.+|.. .|.++.|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 899 999999999999999999999999999999954 8999999999999999999999999999
Q ss_pred CCcccCCCCC
Q 028806 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
+..++-....
T Consensus 259 RaD~~~a~ys 268 (343)
T KOG0286|consen 259 RADQELAVYS 268 (343)
T ss_pred cCCcEEeeec
Confidence 9977665544
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=3e-27 Score=173.54 Aligned_cols=153 Identities=14% Similarity=0.248 Sum_probs=137.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.|++++.++++|..+|.|++|+..-... ..+..| ...|++++|+|....|++++.||+|+|||.... .....+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheecc-
Confidence 57999999999999999999999775543 445544 489999999999999999999999999999753 45566788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|.-.+|++++.|..|++||.+++.++.++..|.. .|..+.|+|++++|++++.|..+++||++++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 99999999 999999999999999999999999999999999966 899999999999999999999999999996643
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=154.72 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=132.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceeeeccCCCceeE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~ 86 (203)
-+|++++.|.+||+|...+|.+..+++...+.|..+.+.|+++.|++++. ..|++||+++... ++..+.+ |...|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~-h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG-HTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec-cCCceEE
Confidence 47899999999999999999999999988999999999999999998875 5799999986554 7889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ |..+|+++++|+.||+++|||++.-.+...+... .+|.++..+|++..|+++..+|.|++||+.+.....+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 9 9999999999999999999999985555555433 4899999999999999999999999999988765544
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=156.16 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=144.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c---cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K---DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~---~~~~~ 75 (203)
|.|++|.++|++++.||.+.|||.-+......++-....|..++|+|.++++++|+-|+...||++.+. . +..+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 469999999999999999999999988777888878899999999999999999999999999999743 1 33456
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+ |.+.+.++ |-+ ...|++++.|.+..+||+++++.+..+.+|.. .|.++.++| +++.+++|+.|+..++||++
T Consensus 141 l~g-HtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 141 LAG-HTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ecC-ccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeecc
Confidence 788 99999999 655 67889999999999999999999999999976 899999999 99999999999999999999
Q ss_pred CcccCCCCCCC
Q 028806 154 DILKGSGNNIS 164 (203)
Q Consensus 154 ~~~~~~~~~~~ 164 (203)
.+...+.+...
T Consensus 218 ~~~c~qtF~gh 228 (343)
T KOG0286|consen 218 SGQCVQTFEGH 228 (343)
T ss_pred CcceeEeeccc
Confidence 99988877654
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=2.6e-25 Score=165.97 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=136.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE-----------------------------------------EeecCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-----------------------------------------TRSEFSEEE 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~ 39 (203)
|.|+..|.+|++++-|+++.+||..++... .++.+|...
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 468888999999999999999998654322 233568899
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCC---------CEEEEEcCCCcEEEEEc
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDE---------DRVITGSENGLISLVGI 109 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~---------~~l~~~~~d~~i~~~d~ 109 (203)
|.++.|+|.+.+|++++.|+++++|.... ......+.. |...|+.+ |+|+| ..+++++.|++|++||+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 99999999999999999999999999864 567788888 99899999 88865 46889999999999999
Q ss_pred cCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+.++..+..|.. +|++++|+|+|+|||+|+.||.|.+|+++++..-+
T Consensus 440 ~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred cCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 99999999999966 99999999999999999999999999998876543
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.8e-25 Score=153.43 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~ 76 (203)
++|+|.|++|++++.|.++.||.-..+ +++..+++|+..|-+++|+++|++|++++.|..|-+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987654 67889999999999999999999999999999999999973 23567788
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. |...|-.+ |+|...+|++++.|.+|++|.-.. -.+.+++.+|.. .|++++|+|.|..|++++.|++++||-.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 88 99999988 999999999999999999998662 357899999966 7999999999999999999999999986
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
.+..
T Consensus 225 ~~~~ 228 (312)
T KOG0645|consen 225 YTDL 228 (312)
T ss_pred ccCc
Confidence 5443
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=4.3e-26 Score=167.49 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=142.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|||+...+++++.||+|+|||....+....+.+|.--|.+++|+|.-.++++++.|..|++||.++ +.++.++.. |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh-c
Confidence 68999999999999999999999998887788899999999999999999999999999999999985 789999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...|..+ |+|++++|++++.|..++++|+++.+.+..+++|.. .++++.|+| ...+|.+|+.||.|..|.+....+
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEecccccc
Confidence 9999999 999999999999999999999999999999999977 799999999 567888999999999999874433
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-25 Score=178.88 Aligned_cols=159 Identities=14% Similarity=0.271 Sum_probs=149.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|....|+++-..|.|++||.+-+.++..+..|.++|+.++|+|...+|++|+.|-.|++|+... .+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999974 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..|+.+ |++.-.+|++++.|.+|+||+..+++++..+++|.. -|+|..|+|....+++++.|.+|+|||+.....++
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 899999999999999999999999999999999966 79999999999999999999999999998887765
Q ss_pred CCC
Q 028806 160 GNN 162 (203)
Q Consensus 160 ~~~ 162 (203)
...
T Consensus 172 ~~p 174 (1202)
T KOG0292|consen 172 KAP 174 (1202)
T ss_pred CCC
Confidence 433
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=169.01 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=144.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++++|+.++||+|+.|.+.+||+++......++.+|...|+++.|+|..+.++|++.|.+|++|.+.+ ..++.+|.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 46899999999999999999999999999999999999999999999999999999999999999985 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|..+ |-.+++.|++++.||-|++|++.++.++.++..|.+ .|++++.+|....+++|+.||.|.+|.=.+..
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999888 999999999999999999999999999999999977 89999999999999999999999999654443
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.4e-24 Score=148.30 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=131.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCC---eEEEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccce
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~ 74 (203)
++|+|- |..||+++.|..|++|+...+ .+...+ .+|...|++++|+|.|++|++++.|.++.+|.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478998 889999999999999998842 333333 36889999999999999999999999999997532 226788
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
++.+ |...|-++ |+++|.+|++++.|..|.||.+..+ ++...++.|+. .|..+.|+|....|++++.|++|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 9999999999999999999998744 56788999977 89999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 765
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=3.1e-24 Score=160.25 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=138.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC---------CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|.|+|.+.+|++++.|++++||+.........+..|...|..+.|+|.+ ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4699999999999999999999998888888999999999999999965 378899999999999997 478
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
++..|.. |..+|+++ |+|+|.++++|+.||.|.+|+.++++..+.+.+. . .|..++|+.+|.+|..+..|+.+++.
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999988 99999999 9999999999999999999999999999999876 4 59999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
No 28
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.7e-23 Score=164.94 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=128.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-------------EeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 68 (203)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4566666777777777777775543222 13567899999999999 889999999999999999964
Q ss_pred cc------ccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.+ .++..+.+ |...|.++ |+|++ ++|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 24567788 99999999 99975 6899999999999999999999988988866 8999999999999999
Q ss_pred EeCCCcEEEEeCCCcccC
Q 028806 141 ISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~ 158 (203)
++.|+.|++||++++...
T Consensus 186 gs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ecCCCEEEEEECCCCcEE
Confidence 999999999999987643
No 29
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.8e-23 Score=166.06 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=123.6
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCcc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~ 70 (203)
++|+|+ +++|++|+.|++|+||++.++. ++..+.+|...|.+++|+|++.. |++++.|+.|++||+...
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 479996 7899999999999999997532 23467789999999999998875 568899999999999853
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE-----EEEEeCCCCeEEEEeCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-----SLALSHDRKFLGSISHD 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~-----~i~~~~~~~~l~~~~~d 144 (203)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+ .+. ...|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 45678999 999999999999999999999999999999998865 332 23456899999998866
Q ss_pred C----cEEEEeCCCc
Q 028806 145 S----MLKLWDLDDI 155 (203)
Q Consensus 145 ~----~i~iwd~~~~ 155 (203)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999864
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=171.47 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=130.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--------------------------------~--------------------- 27 (203)
|.||+||+|||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998754 0
Q ss_pred -------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEE
Q 028806 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (203)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (203)
+++..+.+|.+.|..|.|+.+ ++|++++.|.+|++|++. ...++..|. |...|+|+ |+| |.+|+++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 011233568888999999964 589999999999999997 468888887 89999999 998 78999999
Q ss_pred cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 99 ~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+-||.|+||++...+...-...+ + -|++++|.|+|++.+.|+.+|.+++|++........
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999999876665444444 4 699999999999999999999999999988776654
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.5e-24 Score=165.05 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=142.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+.+|...++++++.|-+|++|+.+.+ .+.+++++|..-|.+++|+| |.+.+++++-|++|++|.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999864 77899999999999999999 678999999999999999974 577788999
Q ss_pred cCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.|+ +-+ +-.+|++|+.|..|+|||.++..+++++.+|+. .|..+.|+|.-.++++|+.||+++||...+.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 644 557999999999999999999999999999977 8999999999999999999999999998887
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
..+..
T Consensus 260 ~lE~t 264 (794)
T KOG0276|consen 260 KLEKT 264 (794)
T ss_pred ehhhh
Confidence 76644
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=151.12 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=138.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++|+.|...++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||+..+..... .+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~-~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW-KLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE-Eeec-c
Confidence 3568988999999999999999999999999999999999999999999999999999999999998654443 3332 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+-=+ |+|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..||+|++|++.++++..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3444445 899999999999999999999999888889999955 89999999999999999999999999999998765
Q ss_pred CC
Q 028806 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 227 ~~ 228 (399)
T KOG0296|consen 227 KI 228 (399)
T ss_pred Ee
Confidence 43
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=9.2e-25 Score=163.42 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=140.1
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..|++++.|+.+++||+.+ +.++..+..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~~ 298 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFHL 298 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEec
Confidence 35777 788899999999999999976 889999999999999999999999999999999999999986 678888874
Q ss_pred cCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...++|+ |+|++ +.+++|+.|+.|+.||+++++.++.+..|.+ +|..+.|-++++++++.+.|++++||+.+.+-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 6678888 99988 8899999999999999999999999988866 89999999999999999999999999988775
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
+.
T Consensus 376 ~i 377 (503)
T KOG0282|consen 376 PI 377 (503)
T ss_pred cc
Confidence 44
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=147.95 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=133.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|+|.++|+|+.|..|.+|+.. ..+....+++|.+.|..+.|.++++.+++++.|.+++.||+.+ ++....++.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 3699999999999999999999965 4455678889999999999999999999999999999999985 678888888
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+..+ -.. ...++.+++.|+++++||++....++++.... .++++.|...+..+.+|+-|+.|++||++....
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccceeeccccCceeeeccccCcc
Confidence 88888888 333 34456678889999999999999998887653 699999999999999999999999999976654
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 209 ~ 209 (338)
T KOG0265|consen 209 L 209 (338)
T ss_pred e
Confidence 4
No 35
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.6e-22 Score=160.69 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=121.8
Q ss_pred EcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc-------cceeeeccCCCce
Q 028806 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (203)
Q Consensus 13 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~v 84 (203)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 445678999998777777888999999999999996 78999999999999999974322 2345677 88999
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.++ |+|++..+ ++++.|+.|++||+++++.+..+..+ . .|.+++|+|+|.+|++++.|+.|+|||++++....
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 999 99998765 68899999999999998877777533 4 79999999999999999999999999999886543
No 36
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-23 Score=144.38 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=131.1
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|++.. +.+++++.||++++||+.. ..++..++.|...|.++.|++ .+..+++++.|++|++|+.. .+..+.++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 5788865 5778889999999999753 467888999999999999998 55678888999999999986 467888999
Q ss_pred ccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |...|+.. |+| .++.+++++.|+.+++||++..-....+..|. ..|.++.|+. +.+.|++++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999998 888 57899999999999999998644334488885 4799999988 567889999999999999998
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 223 ~r~p 226 (311)
T KOG0277|consen 223 LRTP 226 (311)
T ss_pred cccc
Confidence 7643
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=152.57 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=143.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++|+...||++++.|+.|+-||+..++.++...+|-+.|.+++.+|.-..|++++.|.++++||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 57899999999999999999999999999999999999999999999999999999999999999996 678899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .+.+++.+|....+|+++.| .|+-|++..+.-.+
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 9999999 888888999999999999999999999999999866 89999999999999999877 69999998776443
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 355 n 355 (460)
T KOG0285|consen 355 N 355 (460)
T ss_pred c
Confidence 3
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.6e-22 Score=146.97 Aligned_cols=156 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|+++.+++++.++.+++|++.. ......+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 46899999999999999999999998877788888888999999999999999999999999999974 456667777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|.+|++++++....+..|.. .|.++.|+|++.++++++.++.|++||+++.....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 8889999 899988888888899999999998888888887755 79999999998898888889999999998665443
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=5.1e-23 Score=146.21 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=138.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|.++++.|++++.|.+|+.||+++|+....++.|..-|+.+.-+.-|. ++.+++.|+++++||++. +..++++..
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~~- 173 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFEN- 173 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcccc-
Confidence 45889999999999999999999999999999999999999888544444 556788899999999984 567777653
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...++++ |..++..+++|+-|+.|++||++.+..+.++.+|.+ +|+.+..+|+|.++.+-+.|.++++||++..-+.
T Consensus 174 -kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 174 -KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred -ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 6778888 999999999999999999999999999999999977 8999999999999999999999999999887666
Q ss_pred CC
Q 028806 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 252 ~R 253 (338)
T KOG0265|consen 252 QR 253 (338)
T ss_pred Cc
Confidence 54
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.8e-23 Score=158.86 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=143.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
|-+.-+.+++|+.|..|+||+..+++.+..++.|..-|++++.+|.-.++++++.|-.|++||....-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4455678999999999999999999999999999999999999999999999999999999999987788999999 999
Q ss_pred ceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC--CCeEEEEeCCCcEEEEeCCCcccC
Q 028806 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++ |+| |.+.+++++-|++|+||.+.+..+..++.+|.. .|.|+.+-+- ..+|++|+.|..|+|||..+..+-
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999966 7999999874 479999999999999999887665
Q ss_pred CC
Q 028806 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 221 ~T 222 (794)
T KOG0276|consen 221 QT 222 (794)
T ss_pred HH
Confidence 43
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-23 Score=151.12 Aligned_cols=156 Identities=15% Similarity=0.265 Sum_probs=145.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
-|+|+-..+++++.|++|++||..++++...+++|...+..++|+..|+++++++.|-.+++||......++..+.+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 36888889999999999999999999999999999999999999999999999999999999999865677888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.++ |-|.|.+|++++.|.+|+.|++.++.++.++++|.+ .|..+..+.||.++++++.|.++++|-+.++++..
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 999999 899999999999999999999999999999999977 89999999999999999999999999999985543
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.8e-23 Score=162.83 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=142.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++||||++||++--|++++||-+.+-+....+.+|.-||.|+.++||++.++||+.|.+|++|-+. .+.|...+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999998888999999999999999999999999999999999997 4788889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |-|....+.+++.|+.|+-||-...+.++.+.+|.. .|+|++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999988899999999966 899999999999999999999999998654
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=6e-22 Score=145.80 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=137.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|++++|++++.++.|++|++.+++....+..|...+.++.|+|++.++++++.++.+.+|++.. ......+.. +
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998877788888888999999999988888888899999999974 456666777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|++||+++++.+..+..|.. .+.++.|+|+++.+++++.++.|++||+++.....
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 999999999888899999999998888888887754 79999999999999999999999999998765544
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
No 44
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-23 Score=163.52 Aligned_cols=156 Identities=18% Similarity=0.311 Sum_probs=133.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|++- ..+|++|+.||+|++||++...-..++.+....|+.++|+| .+.+|+++...|.+.+||++...++...+..
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 356664 46889999999999999998877778888888999999999 5688999999999999999988888888999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEe--CCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~--~d~~i~iwd~~~ 154 (203)
|.++|.|+ |+|++.+|++|+.|+.|+||++.+.+......-++..++..+.|-|..++ |++++ .|-.|+|||++.
T Consensus 219 -H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 219 -HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 99999999 99999999999999999999998766554454455568999999998765 66666 577899999988
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 298 PYI 300 (839)
T KOG0269|consen 298 PYI 300 (839)
T ss_pred ccc
Confidence 754
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=4.3e-22 Score=150.76 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=135.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.|||||.++++++.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..|++++.|.++++||+.. ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4699999999999999999999999999998887 8999999999999999999999999999999975 45666654
Q ss_pred c---cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 G---LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~---~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. .....+.++|. ...|++.+.+|.|.+++.....++..+.+|.. .|+++..+|++.+|++|+.||.|.-|+..+
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 3 01234556664 67899999999999999999999999999976 899999999999999999999999999988
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+.
T Consensus 352 g~~~ 355 (603)
T KOG0318|consen 352 GTSD 355 (603)
T ss_pred cccc
Confidence 8765
No 46
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-23 Score=164.16 Aligned_cols=153 Identities=21% Similarity=0.345 Sum_probs=131.6
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCC---CeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.|+. ..++||+++..|.|.+||+.. .+.+..+..|...++++.|++. .++|++|++||.|++||++. .....++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccc
Confidence 4442 457899999999999999986 4556678889999999999984 47899999999999999985 4666777
Q ss_pred eccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ ....|+.+ |+| .+.+++++...|.+++||++. .++...+.+|.+ +|.|+.|+|++.+||+|+.|+.|+||+..
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEecc
Confidence 77 88899999 987 578899999999999999985 567788999966 99999999999999999999999999998
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 251 ~~~~ 254 (839)
T KOG0269|consen 251 DSRA 254 (839)
T ss_pred CCCc
Confidence 6543
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=7.4e-22 Score=165.36 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| .+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||+.. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 467899999999999999999999999999999999999997 789999999999999999974 456666664
Q ss_pred CCCceeEE-E-eeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+ ..+.++ | ++++.+|++|+.||.|++||++... .+..+.+|.. .|.++.|. ++.+|++++.|+.|++||++..
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 3 567778 7 4579999999999999999998765 5667788865 89999997 6789999999999999999753
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.6e-23 Score=152.66 Aligned_cols=153 Identities=15% Similarity=0.284 Sum_probs=120.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
+.||||.++|++|+.+..+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+...-
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998766554 345779999999999999999999999999985210
Q ss_pred ccce-------------------------------------------------------------------------eee
Q 028806 71 DCSD-------------------------------------------------------------------------RFV 77 (203)
Q Consensus 71 ~~~~-------------------------------------------------------------------------~~~ 77 (203)
+.+. .+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 0000 000
Q ss_pred ccCCC---ceeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 78 GLSPN---SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~---~v~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ |.. -|+++| -.+..++++|+.|+.|++|+..+|+++..+.+|.. .|.+++|+|.. ..+|+++.||+|+||-.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 1 111 123333 22446899999999999999999999999999976 89999999955 67899999999999987
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 644
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=139.55 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=130.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+-+|++.++++.|.+|++|+...+.++.+..+|...|..++.+.|+..|++++.|..+.+||+.+ ++..+.+.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-cc
Confidence 5788999999999999999999999999999999999999999999999999999999999999985 688999999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCC-----------------------------------
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSE----------------------------------- 123 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~----------------------------------- 123 (203)
..|..+ |+.+...+++|+.|..+++||-++. ++++++....+
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 999999 9999999999999999999998753 45555433222
Q ss_pred --CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 --~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+|++++|+++++.++.++.|++|++.|-.+++.-+.
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 2566666666666666666666666666666666433
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-22 Score=141.57 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=130.0
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|++- ...+++++.|++|++|+...++.++++.+|...|...+|+| ..+.+++++.|+.+++||++..+..+. +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 45553 45678889999999999998888999999999999999999 568999999999999999997766655 777
Q ss_pred CCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...+.++ |+ .+.+.+++|+.|+.|+.||++.- .++..+.+| +.+|+.++|+|.. ..|++++.|-+++|||...+
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 88889999 85 47788999999999999999864 578889999 4599999999965 67899999999999998643
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1e-22 Score=145.68 Aligned_cols=154 Identities=16% Similarity=0.257 Sum_probs=129.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC------------C------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
+|||||.++++|+.|..|+|+|++. + ..++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1 345677789999999999999999999999999999
Q ss_pred EEcCCc--cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCe
Q 028806 64 YSWGYF--KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 64 wd~~~~--~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~ 137 (203)
||+... ++..+.|. ...+++++ |+|.|.+++.|.....+++||+.+.++.... ..|++ .|+++.+++.+++
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 999632 12223333 46789999 9999999999999999999999998876443 34544 8999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++++.||.|++||--+..+.
T Consensus 276 YvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred EEEeccCCcEEeeccccHHHH
Confidence 999999999999996655443
No 52
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=149.54 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=136.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~ 80 (203)
.|+|+...+++++.|..|+||..........+..|.++|+.+..+|.|.||++++.|+...+.|++. +..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999987777778889999999999999999999999999999999985 444444332 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.-.+++. |+|||.++.+|..|+.|++||+.++.....|.+|+. +|..++|+.+|-||++++.|+.|++||+|....-.
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 2346777 999999999999999999999999999999999966 99999999999999999999999999999877543
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=1e-22 Score=159.21 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=135.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCe-----EEE----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 8 MKLLGTSGDGTLSVCNLRKNT-----VQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~-----~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.++++++.|.++++|++...+ ... +...|...|++++++|+..+++||+.|.+.++|++. ......++.+
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeC
Confidence 478999999999999997621 111 224688999999999999999999999999999998 4678889999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|..+.+++++.|.+|+||.+.+..+++++.+|.. .|..+.|-.+|..|++++.||.|++|++.+..+
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999 999999999999999999999999999999999965 899999999999999999999999999999887
Q ss_pred CCC
Q 028806 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
...
T Consensus 582 ~~t 584 (775)
T KOG0319|consen 582 EMT 584 (775)
T ss_pred hhh
Confidence 644
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.4e-21 Score=163.71 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=130.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEe-eCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+|+| ++.+|++|+.|++|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998888777654 678999996 46899999999999999999864445667778
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|...|.++ |. ++.+|++++.|+.|++||++. ..++..+.+|.. .+.+++|+|++.+|++|+.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 89999999 75 788999999999999999974 256778888855 789999999999999999999999999
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
.....
T Consensus 737 ~~~~~ 741 (793)
T PLN00181 737 KAFPM 741 (793)
T ss_pred CCCCC
Confidence 86553
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.5e-22 Score=137.42 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=94.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~ 80 (203)
+.+.|...+++|+.|..+.+||+.+|+..+.+.+|.+.|+.++|+.+...+++|+.|..+++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456777899999999999999999999999999999999999999999999999999999999974 2356667666 5
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
...|.++ .-.+..|++|+.||+++.||++.|+..
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceee
Confidence 6666666 335677889999999999999876543
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=5.1e-22 Score=150.40 Aligned_cols=156 Identities=15% Similarity=0.249 Sum_probs=122.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCc------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~------ 69 (203)
.|||.|.++|+|...|+||||+..... +..+++.-.++|..|+|+++++.++..+.. |.+.+||..+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999986532 223455556788888888887766655432 34555655321
Q ss_pred ----------------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
-+....+.. |...|.++ |+|+|.++++++.||.|.+||-.+|+.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 011112234 66789999 999999999999999999999999999
Q ss_pred eeeec---cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 115 ~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+..+. +|.+ .|++++|+||++.+++++.|.+++|||+.+.....
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 98887 7855 89999999999999999999999999998875543
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=3.4e-23 Score=150.17 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=111.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-------------------------------------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------------------------------- 48 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------- 48 (203)
+.+.|++|+.|.+|+|||..+++++.++.+|...|..+.|+..
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 5668899999999999999999888777777777766666521
Q ss_pred ----CCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC
Q 028806 49 ----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY 124 (203)
Q Consensus 49 ----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 124 (203)
.+++++++.|.+|++|++.+ ..+++++.+ |...|.|+ -..++++++|+.|.+|++||+..|.++..+.+|.+
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred eccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 23555555566666666543 456666666 76666666 23577888899999999999999999988999866
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++.| +...+++|+.||+|++||+.+....
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 6888888 5678999999999999998776543
No 58
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.9e-24 Score=166.36 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=146.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+++.++.|+.+.+||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888889999999999999999999999999999999999999999999999999999999999984 578888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|+|.+++.++.|..+++||+..|+.+..|..|.. .+.++.|+|..-.+++|+.|+++++||+++.+...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 9999999 999999999999999999999999999999999966 89999999999999999999999999999876554
Q ss_pred CCC
Q 028806 160 GNN 162 (203)
Q Consensus 160 ~~~ 162 (203)
...
T Consensus 233 s~~ 235 (825)
T KOG0267|consen 233 SGK 235 (825)
T ss_pred ccC
Confidence 433
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=5.2e-22 Score=147.61 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=129.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCC-cc
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~ 70 (203)
|+|++... .|++++.|++|++||+... .+...+.+|...|..++|++ +..+|++++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 56887654 7899999999999999742 23456778999999999999 456788999999999999995 23
Q ss_pred ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCc
Q 028806 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~ 146 (203)
.+.....+ |...+.|+ |+| ++..|++|+.|++|.+||+|+- +++.++.+|.. .|.++.|+|.. ..||+++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 44556677 99999999 987 5677889999999999999974 57788899966 89999999965 67889999999
Q ss_pred EEEEeCCCcccCC
Q 028806 147 LKLWDLDDILKGS 159 (203)
Q Consensus 147 i~iwd~~~~~~~~ 159 (203)
+.|||+..-...+
T Consensus 341 l~vWDls~ig~eq 353 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQ 353 (422)
T ss_pred EEEEecccccccc
Confidence 9999997655443
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.4e-22 Score=146.49 Aligned_cols=155 Identities=14% Similarity=0.253 Sum_probs=129.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|-. .++++++.|+.+.|||++ +.++.....+|...|+|++|+| ++..|++|+.|++|.+||+++...++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 4677755 467888999999999999 4566677788999999999999 45678899999999999999888899999
Q ss_pred eccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-C-------------ceeeeeccCCCCceEEEEEeCCCCe-EE
Q 028806 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-N-------------RIIQPIAEHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~-------------~~~~~~~~~~~~~i~~i~~~~~~~~-l~ 139 (203)
.+ |...|.++ |+|. ...|++++.|+.+.+||+.. + +.+.+..+|+. .|..+.|+|+..+ |+
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9995 56777888999999999853 1 23566778865 8999999998865 66
Q ss_pred EEeCCCcEEEEeCCCccc
Q 028806 140 SISHDSMLKLWDLDDILK 157 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~ 157 (203)
+.+.|+.+.||......-
T Consensus 391 SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAENIY 408 (422)
T ss_pred EecCCceEEEeecccccc
Confidence 888999999999874443
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=1.2e-21 Score=136.37 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=127.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|....+.|++++.|++||+||.+++..++.+.. ..+|.++.++++|++|.++. .+.|.+||..+. ..+..+.- .
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccC--c
Confidence 3666677888889999999999999999988875 56799999999998876654 578999998753 44444442 4
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.+. .+|+-..+++|+.|..++.||..+++.+..+ .+|.+ +|.|+.|+|+|...++|+.||+|++|.+...+...
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 456666 7999999999999999999999999999886 77865 99999999999999999999999999987665544
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=3e-22 Score=151.46 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=124.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE------------eecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~ 67 (203)
++||+.|..|++.+....++|+|-..-.... .-++|...+++.+|+|.. ..|++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 5799999999888888899999966543333 225788999999999965 678999999999999998
Q ss_pred Cccccceeeecc----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCC-CceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~-~~i~~i~~~~~~~~l 138 (203)
..+..++.++.. ..-+++.+ |+|+|++|++|+.||.|.+|+..... ....-.+|.. ..|+||.|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 776666666531 12245666 99999999999999999999975432 1222345532 279999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++-+.|+++++||+++..+.
T Consensus 380 lSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhccCCCceeeeeccccccc
Confidence 99999999999999987654
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-22 Score=154.33 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46999999999999999999999998888888888 99999999998 678899999999999999976555556788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEe--CCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~d~~i~iwd~~~~ 155 (203)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. +|.+++|+| ....||+|+ .|+.|++||..++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888899999965 899999999 456888877 7999999999887
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
...+
T Consensus 379 ~~i~ 382 (484)
T KOG0305|consen 379 ARID 382 (484)
T ss_pred cEec
Confidence 6553
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.7e-22 Score=144.60 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=131.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--ee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~ 76 (203)
|.|+|....|++++.|++|+++|+......+ .......+|.++.|+|.|.+|++|.....+++||+.+....+. .-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 5799999999999999999999998643222 2223457899999999999999999999999999986422221 12
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |.+.|+++ +++.+++.++++.||.|++||--+++++.++ +.|.+..|.+..|..+++||++.+.|..+++|.+.+
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 33 78899999 9999999999999999999998888888777 466566899999999999999999999999999988
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..-
T Consensus 337 ~R~l 340 (430)
T KOG0640|consen 337 GRML 340 (430)
T ss_pred CceE
Confidence 7653
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-21 Score=136.18 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
|.++.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+++...-+...+++|+.|.++++||+.+. .++..+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 457889999999999999999999899999999999999999999999999999999999999999754 222211
Q ss_pred -------------------------------------------------eccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 77 -------------------------------------------------VGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 77 -------------------------------------------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
.. +...++.. |.|-+++|++|..+|.|..
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 11 23344555 8999999999999999999
Q ss_pred EEccCCce-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
||+++|+. +.....|.. .|+.|.++|+..++++++.|.+-++||.++.+....
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999854 555677755 899999999999999999999999999999876544
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=144.37 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=129.8
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|+|+++ .+++|+.|+.+++||+.+......+.+|+..|++.+|+|. ...+++|+.||.|++||++.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788665 5688889999999999998876688999999999999995 45889999999999999986544444444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..+|..+ +-|.|..|++++.. .|++||+-+|..+ ..+..|.. .|+|+.+..+++.|++++.|+.+++||+.+.+-
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 78999999 88999999988765 6999999866544 44444755 899999999999999999999999999877766
Q ss_pred CCCCC
Q 028806 158 GSGNN 162 (203)
Q Consensus 158 ~~~~~ 162 (203)
.+...
T Consensus 273 v~s~~ 277 (487)
T KOG0310|consen 273 VHSWK 277 (487)
T ss_pred EEeee
Confidence 55543
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=140.00 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=128.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
|.|+|.+..|++|+.||.+.+|.+......+.+.+|..++++-.|.|+|+.++++..||+|++|+..+. .++..+
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e 232 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHKITQAE 232 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEEecccc
Confidence 579999999999999999999999997778899999999999999999999999999999999998642 111110
Q ss_pred --------------------------------------------------------------------------------
Q 028806 77 -------------------------------------------------------------------------------- 76 (203)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (203)
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence
Q ss_pred -----------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 77 -----------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 77 -----------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.. |...|..+ |-+ ..+|++++.+|.|+.||.++|+++.++.+|.. +|.+++++|+.+++++++.|
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCC
Confidence 01 34455666 655 67899999999999999999999999999965 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028806 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
++.+||+..
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 999999874
No 68
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=8.6e-22 Score=143.88 Aligned_cols=152 Identities=11% Similarity=0.178 Sum_probs=123.6
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEE---EeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc-ce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~-~~ 74 (203)
|+|||-. ..|++|.--+.|++|...++.-. ..+.+|...|-.|+|+|.. ..|++|+.|++|+|||++..... ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 5788832 35777777788999998876432 3556799999999999955 67889999999999999864222 22
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i 149 (203)
..+. |...|..+ |+....+|++|+.+|.++|||++. ++++..+..|.. +|++|.|+|.. ..|++++.|.+|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 2356 89999999 988888999999999999999985 678899999965 99999999954 67888889999999
Q ss_pred EeCCC
Q 028806 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
||+.-
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99963
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=152.21 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=133.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+..-+.+|++|+.|.+++|||+.++.+...+.+|...|.++... ...+++|+.|.+|++|++.+ +..+..+.+ |..
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~ 332 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTG 332 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-ccc
Confidence 33347789999999999999999999999999999999988764 45778889999999999984 688999999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc-ccCCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~ 160 (203)
+|.++ .+ +.++++|+.|+.|++|++.+++++..+.+|+. +|.++.+.+. .++++|+.|+.|++||++++ .+.+.
T Consensus 333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 99999 55 88999999999999999999999999999976 8999988665 89999999999999999999 55443
No 70
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-21 Score=154.90 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=136.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------c---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-------~--- 70 (203)
+.|++.-..|++++.|-+|+||+..+.+++..+++|.-.|.|..|+|....+++++-|.+|++||+... +
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence 358888889999999999999999999999999999999999999999999999999999999999521 0
Q ss_pred ------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEE
Q 028806 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESL 129 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i 129 (203)
.....+.+ |...|.-+ |+|.-.+|++|+.|+.|++|.+...+ .+-++++|.. .|.++
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssv 256 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSV 256 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceE
Confidence 01123456 77777777 99999999999999999999987544 4667889966 89999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+|...++++.+.|+.|+|||+.....-+.+
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeee
Confidence 99999999999999999999999877665554
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.88 E-value=5.8e-22 Score=143.80 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=126.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.++|++++.|.+|++|++.++..+.++.+|...|.|+.+ .++++++|+.|.+|++||+. .+.+++.+.+ |..-|+
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~cLRvLeG-HEeLvR 404 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG-HEELVR 404 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc-ccHHHHHHhc-hHHhhh
Confidence 5679999999999999999999999999999999999887 58899999999999999997 5799999999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 86 AL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++ | +.+.|++|..||+|++||+..+. ++..+..|++ .|..+.| |...+++++.|.+|.|||+..+
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg-RVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG-RVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc-eeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99 7 56789999999999999997653 3455566755 7888888 6778999999999999999877
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
.+.
T Consensus 480 ~~~ 482 (499)
T KOG0281|consen 480 PPS 482 (499)
T ss_pred Ccc
Confidence 765
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=2e-21 Score=141.94 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=126.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC-------------------------CeEEEeecCCccceEEEEEeeCCCEEEEec
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (203)
+..++|..+++|+.|..|.||+... ..++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568899999999999999999321 123457788999999999987 77899999
Q ss_pred CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCCceEEEEEe
Q 028806 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~ 132 (203)
.|.+|+.||+.+. .....+.+ ...+.++ .+|..++|++|+.|..|++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDletg-~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLETG-GLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeecc-cceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 9999999999864 55555654 5678888 89999999999999999999998753 4577889966 89999999
Q ss_pred CCC-CeEEEEeCCCcEEEEeCCCcc
Q 028806 133 HDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.. ..|++++.|+++++||+|+..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 965 568899999999999999876
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=4.1e-22 Score=149.35 Aligned_cols=149 Identities=15% Similarity=0.334 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--------
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------- 71 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------- 71 (203)
+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++++.|+++++|+.+..-.
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 4688988 7889999999999999999999999999999999999999999999999999999999864210
Q ss_pred -----c--------------------------------ceeeeccCCCc--eeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 72 -----C--------------------------------SDRFVGLSPNS--VDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 72 -----~--------------------------------~~~~~~~~~~~--v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+ ...+.+ |..+ -..+ |+|+|.+|++|+.+|.+.+||.++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 0 001122 2222 2334 899999999999999999999999
Q ss_pred CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028806 112 NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
.+.+..+..|.+ ++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999955 89999999965 6899999999999996
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.3e-21 Score=143.21 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=131.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.|+||.++|++++.+..+.+||+.+ +.....+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 469999999999999999999987543 45678889999999999999999999999999999999985 56665555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+...+.++ |.|||..+++|+.|+.+..||+. |..+..+++-....|.+++.++||.++++.+.|..|++++..+..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3123556666 99999999999999999999986 566666666544479999999999999999999999999987776
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.+
T Consensus 388 dr 389 (519)
T KOG0293|consen 388 DR 389 (519)
T ss_pred hh
Confidence 55
No 75
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.6e-21 Score=143.22 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=128.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--------ccccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--------~~~~~ 73 (203)
+-+|.|.+|+.|+..|.|++|.+.+|.++..+..|-..|+++.|+-|+.+|++|+.||.|.+|.+.. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998832 23456
Q ss_pred eeeeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCceeee---------------------------------
Q 028806 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQP--------------------------------- 117 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------------------------- 117 (203)
..|.. |.-+|+.+ . .+...++++++.|.++++||+..+..+.+
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67788 88899988 4 34567899999999999999865543322
Q ss_pred ------------------------eccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 118 ------------------------IAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ------------------------~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|.+ .+|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 223432 379999999999999999999999999976654
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.1e-21 Score=150.28 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=134.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEE-eeCCCEEEEecCCCeEEEEEcCCccc-cce----
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~---- 74 (203)
..-+++.|++++.|.+|++|+...+ -+..++..|...|.|+++ .++..++++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3456889999999999999999876 566788899999999999 77888999999999999999975321 111
Q ss_pred ----eee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
.+. + +...++++ .++.|..|++|+..+.|++||.++++.+..+++|++ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 4 56778888 689999999999999999999999999999999988 899999999999999999999999
Q ss_pred EEeCCCcccCCCC
Q 028806 149 LWDLDDILKGSGN 161 (203)
Q Consensus 149 iwd~~~~~~~~~~ 161 (203)
+||+....+....
T Consensus 239 lWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 239 LWDLGQQRCLATY 251 (735)
T ss_pred eeeccccceeeeE
Confidence 9999887766543
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=1.5e-20 Score=147.87 Aligned_cols=157 Identities=13% Similarity=0.205 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+..|..||.|+. -|.+-||+.++...+...++|...+++++++|||+++++|+.||.|++||.. .+-|..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 467888999988765 4899999999998888999999999999999999999999999999999997 4689999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
|...|+.+ |+..|+.+++++-||+|+.||+...+...++.........|++..|.|..++.|+.|. .|++|++.+++.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999 9999999999999999999999999999999887554667889999999999998775 699999999976
Q ss_pred CC
Q 028806 158 GS 159 (203)
Q Consensus 158 ~~ 159 (203)
-.
T Consensus 471 lD 472 (893)
T KOG0291|consen 471 LD 472 (893)
T ss_pred ee
Confidence 53
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.2e-21 Score=147.41 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=132.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEec--CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|+++++++|+|+.|+.+.|||.....+...+..|...|..++|+| ...+|++|+ .|+.|++|++.+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888889999999999999999 557888865 599999999974 56666665
Q ss_pred ccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. ...|..+ |++..+-|+++. .+..|.||...+.+.+..+.+|.. .|..++++|+|..+++++.|.++++|++-.
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3 6789999 999887777644 467899999999999999999976 899999999999999999999999999876
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2e-21 Score=145.82 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=126.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|-.||+++|+|...|.|+|||+.+...+..+..|..++..+.|+|+. ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999976655677888999999999999965 56778888999999999754 33446788 9
Q ss_pred CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..|+|. ++|. +..+++|+.||.|++||+++. ..+.++. | +.+|..+.+-|.|..+++++ ...+++||+-++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 8775 557889999999999999976 5555554 3 34899999999999999987 45899999986543
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=8.7e-21 Score=132.71 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=128.6
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---------
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
++|+|. ...+++++.|.+|++||++.+++...+....+ -..+.|+|++.+++.++.|..|.+.|.++..
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 356664 46889999999999999999998877765433 4467899999999999999888888775321
Q ss_pred -------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 71 -------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 71 -------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+++..++. |.....|+ |+|+|+++++|+.|-.+.+||+..--++..+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 12333455 77778888 9999999999999999999999988888888
Q ss_pred ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..+ +.+|+.+.|+.+|++||+++.|.-|-|=++.++..-.+
T Consensus 228 sRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 228 SRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence 887 66999999999999999999999998888887765433
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=9.2e-21 Score=134.97 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=124.4
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+||| ...++++++.|++||+|+++. +... .....|.++|.+++|+.+|..+++|+.|+.+++||+.+. .+..+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--Ceeeee
Confidence 57999 455677999999999999986 3333 334468899999999999999999999999999999853 556677
Q ss_pred ccCCCceeEE-EeeCC--CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. |..+|.++ |-+.. ..|++|+.|.+|++||++...++.++... + .++++.. -...++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 7 99999999 75444 48999999999999999999999888776 4 5777654 445788888999999999987
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..+
T Consensus 186 ~~te 189 (347)
T KOG0647|consen 186 PPTE 189 (347)
T ss_pred Ccch
Confidence 7644
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=2.8e-21 Score=156.61 Aligned_cols=153 Identities=15% Similarity=0.244 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCC------------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
+..+|+|..+++|+ .|+.++||+... .+.+.....|.+.|.|+.|+|||++|++|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35789999999999 899999999752 2334566779999999999999999999999999999998
Q ss_pred CC------cc-----------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE
Q 028806 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
.. .+ .++..+.+ |...|..+ |+|++.++++++.|++|.+|+..+.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 01 24556778 99999999 999999999999999999999999999999999965 8999
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.|.|-|+|+|+-+.|++|+||.+...
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEcccc
Confidence 999999999999999999999997663
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=135.23 Aligned_cols=104 Identities=12% Similarity=0.203 Sum_probs=93.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
++.++|+|+.|.+|+|||++....+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+.... .++..+++ |.+.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~~ 129 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKGQ 129 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-cccc
Confidence 688999999999999999999888888888999999999998765 8999999999999999854 78888898 9999
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
|+.+ .+|.+++.++.+.|+.+++||+-.
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhc
Confidence 9999 899999888888888888888743
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.6e-20 Score=132.50 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=127.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~ 79 (203)
|+.+|-+..+++++.|++|++||++..++...+.....+ .++|.|.|-+++++.....|++||++.- +.+..++.-
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i- 182 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI- 182 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-
Confidence 457898999999999999999999977666555443333 3789999999999988889999999864 345555543
Q ss_pred C---CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc--eEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 S---PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP--IESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~---~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. ......+ |+|+|++|+.++..+.+++.|.-+|..+.++..+.... -...+|+||++++++|+.||+|.+|+++
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 3 4567778 99999999999999999999999999888887775421 1467899999999999999999999998
Q ss_pred CcccCCC
Q 028806 154 DILKGSG 160 (203)
Q Consensus 154 ~~~~~~~ 160 (203)
++.+-..
T Consensus 263 tg~~v~~ 269 (311)
T KOG1446|consen 263 TGKKVAV 269 (311)
T ss_pred CCcEeeE
Confidence 8876543
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.8e-22 Score=142.47 Aligned_cols=156 Identities=15% Similarity=0.274 Sum_probs=139.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.||.|..+||+|+.||.|+||.+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+. .+.++..+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4689999999999999999999999999998887 899999999999999999999999999999997 5789999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|... |+++|.++++++.||+|++|+..+++++.+++... +.+|.++..-|. ...+++|...++|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999999 99999999999999999999999999998886543 458888888884 4678888889999999886554
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
-+
T Consensus 427 Vr 428 (508)
T KOG0275|consen 427 VR 428 (508)
T ss_pred Ee
Confidence 43
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=134.30 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=129.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
+.||+.|.+||+|..+|.|.|||+.+-.....+.+|..+|.+++|+++|++|++++.|..+.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888888999999999999999999999999999999999743 33332210
Q ss_pred ------cC------------------------------------CCce-eEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 79 ------LS------------------------------------PNSV-DAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 79 ------~~------------------------------------~~~v-~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
.| ...+ .+. |.+.|++|++|...|.+.+|+..+-++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0001 112 567789999999999999999999999
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..++-.....|.++.++..|+.|+.-+.|+.|+.|+++.....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 88887665347999999999999999999999999998754433
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=138.42 Aligned_cols=148 Identities=19% Similarity=0.286 Sum_probs=129.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4578999999999999999999999987655543 334689999999999999999999999999975 568889999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|.++|..+ |+-+|-+|++++.|+.|++||++.-+..+++.......+.++.|.+.|++|+.++.+=.|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999 9999999999999999999999988877777666544799999999999999998776666665
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.6e-20 Score=140.11 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.||||++||+|+.|..|.||+..+.+.+..+++|.+.|.+++|-.....|++++.|+.+++|++.. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999998889999999999999999973 567888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|..+ ....++.+-+|+.|+++++|.+. .+....+.++.. .+-|++|-.+ .++++|+.+|.|.+|++....+-
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999 77777788888899999999994 344456777744 7899998755 67899999999999999877654
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=9.9e-20 Score=144.48 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=130.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------- 70 (203)
++.++.|++.+.|...|+|-+|++++|-....+ ..|..+|++++...-++.+++++.+|-+.+||+....
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 356788999999999999999999999877777 4789999999998888899999999999999986421
Q ss_pred ---------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028806 71 ---------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 71 ---------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 116 (203)
..++.|.+ |.+.++.+ |+|+|++|++++.|++|++||+.++.++-
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 12223456 88899999 99999999999999999999999999998
Q ss_pred eeccCCCCceEEEEEeCCCCeEEEEeCC-CcEEEEeCCCc
Q 028806 117 PIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~iwd~~~~ 155 (203)
.+... . ++.++.|+|+|.+||+...| .-|++|-=.+.
T Consensus 613 ~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 613 GLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred eEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 77665 3 78999999999999999977 67999964443
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=127.17 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+-++.+++.....|+|.|.....-+++..++.|.....||.|+|+|++|++|+.|-.+.+||+. .-.+++.+.. +
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~-ELiC~R~isR-l 230 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD-ELICERCISR-L 230 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh-Hhhhheeecc-c
Confidence 3577667777777777999999999999999999999999999999999999999999999999997 3567788887 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..+|+.+ |+.+|++|++++.|..|-|=++++|..+..++.. . +...++|+|...+||.++.|
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecC
Confidence 9999999 9999999999999999999999999999888765 3 78999999999999987754
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=4.5e-20 Score=134.99 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=127.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~ 79 (203)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.++.. ...+.+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4666 66889999999999999999988887776 4679999999999999999999999999998643 33467888
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.+.|.++ |+|... .|++++.|+++++||+++.+ ++..+.+|.+ .|.++.|+. +.+|++|+.|++|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEeccC-CceEEeccCcceEEEecccc
Confidence 99999999 999654 57789999999999999877 8999999966 899999974 46899999999999987543
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.4e-20 Score=145.83 Aligned_cols=154 Identities=11% Similarity=0.165 Sum_probs=129.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~- 79 (203)
++|+-+|+++|.|+.|-.|++.+..+......+++|.++|.++.|+|.+++|++++.||.|++|++.. +.+...+...
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999998888889999999999999999999999999999999999974 4444443320
Q ss_pred -----C-CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. ...+..+ |+|++..+++.+.++.|++|+....+....++..... .+..+.|+|+|.|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223344 9999999999999999999999988888777654322 488899999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 261 v~t~ 264 (933)
T KOG1274|consen 261 VDTH 264 (933)
T ss_pred cccc
Confidence 9853
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=2.5e-20 Score=141.02 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=125.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-ee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~ 75 (203)
++|...+++++|+. |.|+|||+... .++..+.. ....|+++.+.|||+.|++|+.-.++.|||+......+ ..
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 45666678888876 89999999753 23333332 34678999999999999999999999999997533222 23
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.. .....+++ .+||.+..++++.||.|.|||+.+...+..+++|++ .+.||.++++|..|.+|+.|.+++.||+++
T Consensus 505 lts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 505 LTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCceeecCCCccceeehhhhh
Confidence 333 34456667 799999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+-
T Consensus 583 grql 586 (705)
T KOG0639|consen 583 GRQL 586 (705)
T ss_pred hhhh
Confidence 8754
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.1e-19 Score=126.30 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=134.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|.|+++|.+|++++.|.+|++||..++..+.++..+...+..+.|....+.++.++. |.+|+.-++.. .+.++.|.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 568999999999999999999999999999999888888999999887777777776 88999999974 588999999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|+|+|-++|++...+.|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 899999999999999999999998887777765522 3 479999999999999888999999998754
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 175 g 175 (311)
T KOG1446|consen 175 G 175 (311)
T ss_pred C
Confidence 4
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1e-20 Score=137.76 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=130.3
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|... .|++|..|+.|.+||++++.++..+.. ....+.|+|+|.+-.|++++.|..++.||++....++.....
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 35777654 678888999999999999877765532 345678999998888999999999999999988888888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...|..+ |+|.|+-+++|+.|.+|+||..+.+...-.+....-..|.|+.|+.|.+|+++|+.|+.|++|.....+.-
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999999 99999999999999999999998776554443222237999999999999999999999999987655443
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.5e-19 Score=138.90 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=132.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCe--EEE--------eec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQT--------RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~--~~~--------~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
-++..++|+|+-|+.|.+||+.++. .+. .+. ++...|++++.++.+..+++|+..+.+++||.++ ...
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4567789999999999999999762 222 223 6778899999999999999999999999999986 455
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..+.+ |...|+++ .+++|+.+++++.||+|++||+...+++.++..|.+ .|+++..+|+=.++++|+.||.|..=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 667789 99999999 899999999999999999999999999999999987 699999999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+++.
T Consensus 284 l~n~ 287 (735)
T KOG0308|consen 284 LRNP 287 (735)
T ss_pred cCCc
Confidence 9985
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.2e-19 Score=141.23 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=134.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccc----
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCS---- 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~---- 73 (203)
.|-|.+++++.|...|.+.+||+.....+.+++.|.+.|+.++.+||+..+++++.|.+|++||+... +...
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 46788899999999999999999988888888999999999999999999999999999999998521 1111
Q ss_pred ----eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+++. -...+.|+ ++|+|++++++--|.+|+||-+.+-+....+.+|.- ||.||.++||+..++||+.|+.|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678889 999999999999999999999999999999999966 999999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028806 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+|-+.=+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 998876665433
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=1.4e-19 Score=137.23 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcc--ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+|+.||+|..||.|.+|+..... ....-..|.. .|+||.|+++|++|++-+.|+++++||++..++++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 4799999999999999999999975421 1223345655 8999999999999999999999999999987777766
Q ss_pred eecc--CCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 76 FVGL--SPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 76 ~~~~--~~~~v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
..+. ......|+|+|+.++|++|+. .|.+.+||..+-..+..+.-. ...|..+.|+|.=+.|++++.||.+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCce
Confidence 5541 112234559999999999865 477999999988888888766 4478999999998889999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++|--.+..++
T Consensus 482 ~vyYdp~~S~R 492 (641)
T KOG0772|consen 482 HVYYDPNESIR 492 (641)
T ss_pred EEEECcccccc
Confidence 99876655554
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=4.1e-19 Score=124.84 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=119.5
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-------------------------------------------------
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------------------------------------------------- 34 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------------------------------------------------- 34 (203)
+-+.++|++|+.|.++++||+.+|+.+..++
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 4456788888888888888888876554331
Q ss_pred ----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 35 ----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 35 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
.+.+.++.+.|.|-+..|++|..+|.|..||+++....+..... |...|..+ ++|+..++++++.|.+-++||+
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeeec
Confidence 23455677888888999999999999999999976666666677 88899999 9999999999999999999998
Q ss_pred cCCceeeeec-------------------------------------------------------cCCCCceEEEEEeCC
Q 028806 110 LPNRIIQPIA-------------------------------------------------------EHSEYPIESLALSHD 134 (203)
Q Consensus 110 ~~~~~~~~~~-------------------------------------------------------~~~~~~i~~i~~~~~ 134 (203)
++-+.++++. +|-+ +|.+++|+|+
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPd 298 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPD 298 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCC
Confidence 7644443332 3433 8999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028806 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...++|+.||.|++.-+..
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986654
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=3.9e-19 Score=144.42 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=130.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
++|+|++.+|++++.|++|.||+..+...+..+++|.+.|-.+.|.|-|++|++-+.|++|++|.+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 5799999999999999999999999999999999999999999999999999999999999999964310
Q ss_pred ------------------------------cc-----------ceeeeccCCCceeEE-EeeC-----CC----------
Q 028806 71 ------------------------------DC-----------SDRFVGLSPNSVDAL-LKLD-----ED---------- 93 (203)
Q Consensus 71 ------------------------------~~-----------~~~~~~~~~~~v~~~-~~~~-----~~---------- 93 (203)
.. -..|.+ |..++.++ |+|. ..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00 011346 77888888 8772 11
Q ss_pred --EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++|+.|+.|.||.....+++..+..-....|..|+|+|||..|+.++.||+|.++.+......
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 57789999999999987667665554333448999999999999999999999999998766544
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6.7e-19 Score=139.72 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=120.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.||. .++|++++-|.+|++|.+....++..+. |..-|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred ccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 45775 4589999999999999999988988775 889999999999 789999999999999999963 33333443
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--cCC-----CCceEEEEEeCCC-CeEEEEeCCCcEEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EHS-----EYPIESLALSHDR-KFLGSISHDSMLKLW 150 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~-----~~~i~~i~~~~~~-~~l~~~~~d~~i~iw 150 (203)
-..-|+++ |.|+|++.+.|+.+|.+++|+....+...... .+. ...|+.+.|.|.. ..|++.+.|..|+||
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 35678888 99999999999999999999987665543331 110 1269999999854 457777889999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
|++...
T Consensus 530 d~~~~~ 535 (712)
T KOG0283|consen 530 DGRDKD 535 (712)
T ss_pred eccchh
Confidence 995543
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=137.30 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=132.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEe-ecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
..++++++.+.+|++|+..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||+. .+.+...+.+ |...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988877 99999999999998778899999999999999986 5799999999 999888
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++ +-...++++|+.|.+|++|++.++..+..+.+|.. +|.++..+ +.++++|+.|+.|++|++.++..-..
T Consensus 296 ~~-~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 296 CL-TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred EE-EccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeee
Confidence 88 34556778899999999999999999999999866 89999997 88999999999999999998776544
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=118.76 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=120.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-----EEeecCCccceEEEEEeeC---------------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-----QTRSEFSEEELTSVVLMKN--------------------------- 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~--------------------------- 48 (203)
.+|||+|++|++|+.|.+|++..+....+ -..+.-|.+.|..++|..+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 37999999999999999999887653211 1123334555555555432
Q ss_pred -------------------CCEEEEecCCCeEEEEEcCCccccceeeec------cCCCceeEE-EeeCCCEEEEEcCCC
Q 028806 49 -------------------GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 49 -------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~d~ 102 (203)
+-.+++|+.|.+|++||++. ..++.++.. .....|.++ ..|.|+++++|..|.
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 33677889999999999985 355554422 122567777 799999999999999
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+||++.++.++.+..|+. .|.|+.|+|...|+++++.|..|++-|+....
T Consensus 254 sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 999999999999999999965 89999999999999999999999999986543
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=1e-19 Score=134.38 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------- 69 (203)
+.|.++++++++++.|+.+++|++...+...++.+|...|+++.|......+++++.|.+|+.||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999998776655777777777777777531
Q ss_pred ---------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
..+..... -.+.|+++ .++++..+++++.|.++.+.|+++.+....+...
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 11111111 13467888 7889999999999999999999998888777654
Q ss_pred C---CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~---~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. ....+.+.|+|++.|+++|+.||.|+||++.++.....
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 2 12478899999999999999999999999999876644
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=128.89 Aligned_cols=156 Identities=16% Similarity=0.253 Sum_probs=127.4
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+.. .+.||+|+.|.+|.+||+.++++..++..|...|.++.|+|. ..+|++|+.|+++.++|.+.....-..+.
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-- 327 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-- 327 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--
Confidence 34443 357899999999999999999999999999999999999995 47889999999999999984333333333
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.|-.+ |.|. ...++++..||.|+-+|+|. ++++.++..|.+ +|.++++++.- .+|++++.|+.+++|++..-
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35677777 8664 45677788899999999986 589999999966 89999999855 56889999999999999876
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.+...
T Consensus 407 ~~~~v 411 (463)
T KOG0270|consen 407 SPKSV 411 (463)
T ss_pred CCccc
Confidence 66543
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.8e-20 Score=143.92 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++.+++|+.+..+.+|.+.....+..+.+|..+|.++.|++...+|+.|+.+|+|++||+.. ...++++.+ |...+..
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~s 117 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNITS 117 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcce
Confidence 46788899999999999988777778899999999999999999999999999999999974 577889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+ |+|-+.+.+.++.|+.+.+||++-..+...+.+|.. .+..+.|+|+|++++.++.|..++|||+..+.....++
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9 999999999999999999999998888889999865 78999999999999999999999999998887766655
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7e-19 Score=126.56 Aligned_cols=157 Identities=14% Similarity=0.211 Sum_probs=117.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-----eEE-Eeec----------------------------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQ-TRSE---------------------------------------- 34 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-----~~~-~~~~---------------------------------------- 34 (203)
|+|+.||++|++++.|++|++|+++.- +++ ..++
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 000 0000
Q ss_pred -------------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcC
Q 028806 35 -------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 35 -------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (203)
.|...+..+-....+.++++++.|..|.+|++. ++.+..+.. .....+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 011223333333445688999999999999997 677777766 55444445 7999999999998
Q ss_pred CCcEEEEEcc---CC-----ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 101 d~~i~~~d~~---~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
--.|++|.+- .| .....+.+|.. .|..++|+++.+.+++.+.||+++|||+.-.....++
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 8889999863 22 24567889954 8999999999999999999999999998766554443
No 108
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=8.1e-19 Score=129.21 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|+| +.+.||+|+.|.+|.||.+..+ +++..+.+|..+|-.++|+|.. +.|++++.|.+|.+|++.+. .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 4568899999999999999754 3466888999999999999954 78889999999999999864 4
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe---CCCcE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i 147 (203)
.+-.+. |...|+++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.++..+.+|. .++.+
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444444 88999999 9999999999999999999999999999988888776666778888888554444 57889
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
-+||..+.+..
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998877655
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.4e-18 Score=123.85 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=116.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe------EE----E-----eecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT------VQ----T-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~------~~----~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
.|+++++|+.||.|.|||++... ++ . .-.+|...|..+.|-| |.-.+.+++.|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 57899999999999999997521 11 1 1135777899999999 5667888999999999999764
Q ss_pred cccceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEeCC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d 144 (203)
+....|+ -++.|++- ++| ...+|++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 3334444 35566666 666 345777888899999999999999999999977 8999999997765 6799999
Q ss_pred CcEEEEeCCCc
Q 028806 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.|++||++.-
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999765
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.5e-18 Score=122.82 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=123.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|+|.++.|++++.||++++|++........++ |..++.+++|.+ ...+++|+-||.|+++|+.+. ....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC--cceeecc-C
Confidence 4688888999999999999999999875555554 788999999986 567899999999999999753 3334555 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+++++ +.+....+++|+.|+.|++||.+.......+... . .|.++.. .+..|++|+.+..+.+||++++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 9999999 8888899999999999999999875555555444 3 6887766 67789999999999999999987544
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=127.32 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=118.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC----CCc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS----PNS 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~ 83 (203)
..+++|..|++|++||+++..+......+. .|+++..++++..|.+++.|.++.+.|+++ ....+.+.. . ...
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA-~g~k~asD 389 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSA-EGFKCASD 389 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeec-cccccccc
Confidence 346678889999999999998888887654 899999999999999999999999999985 355555543 1 122
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.+.+ |+|++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|.+|++++.++.+.+|
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4444 9999999999999999999999999999888766442 69999999999999999999999999
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.6e-18 Score=118.19 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-ccceeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~ 79 (203)
-|+.||+++.|++|+|+..+.+ +++.++.+|.++|+.++|.. .|.+|++++.||.|.+|.-.+.. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 4789999999999999999853 56789999999999999975 78999999999999999876421 12233455
Q ss_pred CCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEEeCC---C-----------CeEE
Q 028806 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (203)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~ 139 (203)
|...+.++ |-| -|-.|++++.||.|.|.+.++. ........|.- .|++++|.|- | ..|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 755 5678889999999999988653 23345677854 7999999995 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+|+.|..|+||+....
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998774
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.3e-18 Score=123.29 Aligned_cols=151 Identities=19% Similarity=0.269 Sum_probs=131.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
|-..|+.+++++.|.+..+||++++.++..+.+|....+.+.-+|..+++++++.|.+.++||++..-..+..|.+ |..
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 5567889999999999999999999999999999999999999999999999999999999999855566788999 999
Q ss_pred ceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 83 SVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++.....+..+++|+.|.+|++||+++. .++.+++.. .++..++.+..+..|+.--.++.|++||+....
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 999993344567899999999999999875 577788765 278999999888888888888999999997643
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=1.6e-18 Score=131.40 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=127.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------ 74 (203)
|+.|||.+..+++..||.|.|||+.+...++.+++|...+.||.++++|..|.+|+-|++|+.||++...+..+
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999975321110
Q ss_pred ---------------------------------eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 75 ---------------------------------RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 75 ---------------------------------~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
.+.. |...|.++ |.+.|+++++.+.|..+..|...-|..+...+.
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCccceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 0112 56678888 999999999999999999998877777766665
Q ss_pred CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 121 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. .+|.++.++.|.+||++|+.|..-.||.+
T Consensus 674 ~--SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 S--SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c--CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4 37999999999999999999998888865
No 115
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=3.4e-18 Score=121.50 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeec-----CCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+.|.|++..|++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ ++++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35899999988875 78999999987644 33332 2455678889998 677777754 789999999965444
Q ss_pred ceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCCcEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~ 148 (203)
...-.. |...++.+ |+|+-. +|++++.||.|++||.+. ..+++.+..|.. .|+++.|+|. .++|++++.|..|.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 444455 88899999 999765 567888899999999885 468889999965 8999999994 47788999999999
Q ss_pred EEeCCCcccCCC
Q 028806 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+|-...-..+++
T Consensus 285 Lsca~svSSE~q 296 (370)
T KOG1007|consen 285 LSCASSVSSEQQ 296 (370)
T ss_pred EEeccccccccc
Confidence 998866554443
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-17 Score=114.46 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=125.7
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+-++-++++|+.|.+|++||++-+.++.++.. ..+.|.+++..|.|++|++|-.|....+||++ .+++++.+
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f 269 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRF 269 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeee
Confidence 44677899999999999999998877776642 23578999999999999999999999999998 57899999
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. |...|+++ |+|...++++++.|..|++-|++.. -++.....|.+ .+..+.|+|..--+++.+.|.+..+|-
T Consensus 270 ~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 270 HP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred CC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEec
Confidence 99 99999999 9999999999999999999998632 23444556755 677789999998899999999999997
Q ss_pred CC
Q 028806 152 LD 153 (203)
Q Consensus 152 ~~ 153 (203)
+.
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 64
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.9e-19 Score=125.94 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=128.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC------Cc------------
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG------YF------------ 69 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~------~~------------ 69 (203)
..+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||... ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 467888999999999999999999999999999999999999999999999999999731 10
Q ss_pred ---------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE
Q 028806 70 ---------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~ 127 (203)
..++..+.+ |...|.+. |-..|+.+++++.|++..+||+++|+.+..+.+|.. ..+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELt 318 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELT 318 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hcc
Confidence 113344567 77788888 888899999999999999999999999999999954 788
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++-+|..+++++.+.|.+.++||++..
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhh
Confidence 8999999999999999999999999844
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=119.21 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
++|+-+|..+++|+-|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|++||++.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999965 56677999999999987665 8999999999999999853 2222110
Q ss_pred ------------------------------------c---cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--cee
Q 028806 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (203)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~ 115 (203)
. .....++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012346777 6777777899999999999888776 444
Q ss_pred eeeccCCC--------CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 QPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+++.|.. .+|.+|+|+|.-..|++++.||++.+||-..
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 56666642 3578899999989999999999999999644
No 119
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=4.1e-17 Score=114.55 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=105.7
Q ss_pred CcccccCCEEEEEcC----------CCeEEEEEcCC-CeEEEeecC-CccceEEEEEeeCCCEEEEe--cCCCeEEEEEc
Q 028806 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----------d~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~~wd~ 66 (203)
|.|+|+|.+|+.-.. -+...+|-++. +.....+.- ..++|.+++|+|+++.|++. ..+..+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 469999998765432 13344555432 223333332 34569999999999887544 45679999999
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. ...+..+ ....+..+ |+|+|++|++++. .|.|.+||+++.+.+...... .+..++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 3444444 34556678 9999999999864 467999999988888766533 478999999999999887
Q ss_pred C------CCcEEEEeCCCcc
Q 028806 143 H------DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (203)
. |+.++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999986543
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=3.5e-18 Score=134.37 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=86.4
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~ 127 (203)
++++++.|..|+||++.. ++..+.|++. +.+..-.+ ..|.|.|+++.+.|.++.++|+-+|+++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 677778888888888874 5666777652 33444445 799999999999999999999999999999999977 899
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998653
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=121.75 Aligned_cols=145 Identities=9% Similarity=0.198 Sum_probs=112.8
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~ 74 (203)
|+|||.. ..+++|+-||+|+|||++.+ .++ ..+.|.+-|+-|.|+....+|++|+.||+++|||++. .+.++.
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 5799965 47899999999999999986 233 3378999999999999888999999999999999975 346788
Q ss_pred eeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCc-------------------eeeeeccCCCCceEEEEEeC
Q 028806 75 RFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR-------------------IIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~-------------------~~~~~~~~~~~~i~~i~~~~ 133 (203)
.|+- |..+|+++ |+|. ...|++++.|..|.+||+.... .++...+. ..+..+.|++
T Consensus 342 ~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~ 418 (440)
T KOG0302|consen 342 TFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHR 418 (440)
T ss_pred eEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheecc
Confidence 8998 99999999 9985 5667788889999999985211 12222222 2578899998
Q ss_pred CC-CeEEEEeCCCcEEEE
Q 028806 134 DR-KFLGSISHDSMLKLW 150 (203)
Q Consensus 134 ~~-~~l~~~~~d~~i~iw 150 (203)
.- -+|++.+.|| +.||
T Consensus 419 QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCCCeEEEecccc-eeEE
Confidence 65 4677777776 4444
No 122
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.77 E-value=4.8e-19 Score=123.55 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=128.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
....|+++.|-+.+|||.-+|..+..++ |.-.|..++|+.|.++|++|+.+..+++||++....+...+.+ |.+.|+.
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~ 148 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRT 148 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCccee
Confidence 3345777889999999999988877765 6778999999999999999999999999999877777888899 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ |....+.|++++.++.|++||.+++..++++.... +|.++.++++|++|.++ ..+.|.+||..+...-
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL 218 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccce
Confidence 9 88888899999999999999999999999987663 79999999999987665 4678999999887544
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=9.7e-18 Score=130.99 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=121.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEE
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
.|++|+.|.+++||-.. ++...+++|...|+.++.-|.+ .++||+.|.+|++|.- +..+++|.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999864 4556689999999999999877 8899999999999974 678899999 999999995
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
--+...+++++.||.|++|++ +|+.+..+.+|+. -|+++...+++..+++++.|++++||+...
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 445567899999999999998 7899999999966 799999888889999999999999998763
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=2.8e-17 Score=117.31 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=123.2
Q ss_pred ccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|-| |..++.+++-|.+++|||..+.+....++ .++.|.+-+++|= ..++++|..+-.|++.|+. .+..-+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 444 44577788899999999999988776665 3577888899883 4577788889999999997 5788999999
Q ss_pred cCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCC-ceeee--------------eccCCCCceEEEEEeCCCCeEEEE
Q 028806 79 LSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPN-RIIQP--------------IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~--------------~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
|...|.++ |+|...+ |++|+.||.|++||++.. .+... -..|.+ .+..++|..++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 9998776 557888999999999743 22222 234433 79999999999999999
Q ss_pred eCCCcEEEEeCCCcccC
Q 028806 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887654
No 125
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.6e-17 Score=111.79 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=121.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------C-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
+|+|.+++|++|..+|.|.+..+.. + ..+...++|.++|+.++|+ ..+|++++ ||.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 6899999999999999999999863 1 2334557899999999998 34666665 59999998853211
Q ss_pred ------cceeeecc-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.++..... ....|.++ ..|..+-+++++.|+.++.||+++|+...++++|++ -|.++.--.....++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 11111110 23457788 688888888888999999999999999999999988 699988855556788
Q ss_pred EEeCCCcEEEEeCCCcccCCC
Q 028806 140 SISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+.||++++||+++.+.-+.
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ecCCCccEEEEeccccceeEE
Confidence 999999999999999876644
No 126
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.8e-17 Score=116.41 Aligned_cols=145 Identities=16% Similarity=0.250 Sum_probs=121.9
Q ss_pred EEEEEcCCCeEEEEEcCCC------------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.|++|++...|.=+.+... .++..+..|.+.|++++. ++.++++|+.|-+|++||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 4678888777776665421 123455678999999987 588999999999999999985 4666777
Q ss_pred eccCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |.+.++++ |.++-. .|++|+.||.|.+|+.....++..++.|.. .|+.++.+|.+++.++.+.|+.+++|++-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 877654 899999999999999999999999999977 79999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 158 ~Gr~a 162 (362)
T KOG0294|consen 158 RGRVA 162 (362)
T ss_pred cCccc
Confidence 77543
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=123.56 Aligned_cols=154 Identities=14% Similarity=0.246 Sum_probs=126.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|||+.+.+.||.+-.+|.|.+|++..+- +...+.++ ...|.+++|.+ +..|++.+.+|.|..||+.+ ..+...+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 5889999999999999999999998753 33445544 45799999995 55678888899999999985 456666777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.++++ .+|.+..++.||.||.+..++..+++..... ... .++|.++.|+|++..|+.|+.||.|++||+..+
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-cceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 78899999 7999999999999998888887777665432 233 248999999999999999999999999999877
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
..-
T Consensus 187 ~t~ 189 (691)
T KOG2048|consen 187 QTL 189 (691)
T ss_pred ceE
Confidence 644
No 128
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.3e-17 Score=122.25 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=123.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----- 75 (203)
|+|+++|..|++++.||++|||+.+....+.....|...|.++.|+||+++|++.+.+ ..+||++... ..+..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5799999999999999999999988877777777888999999999999999999999 8999999753 11100
Q ss_pred ---------------------ee--------------ccC-------------CCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 76 ---------------------FV--------------GLS-------------PNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 76 ---------------------~~--------------~~~-------------~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
+. .++ ...+.++ .+++|++++.|+.+|.|.+
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 00 000 2356777 7999999999999999999
Q ss_pred EEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 107 VGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 107 ~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+-+.++..+ .| ..-|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9998877776654 55 44899999999999999999898888887754
No 129
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.3e-17 Score=123.43 Aligned_cols=151 Identities=13% Similarity=0.285 Sum_probs=131.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----Ee---e-----------cCCccceEEEEEeeCCCEEEEecCCCeEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR---S-----------EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~---~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (203)
|+++|+.+++++++.+++|.-|++.+++.. .. + +.|...+.+++.++|+++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 468999999999999999999999876532 11 0 25677899999999999999999999999
Q ss_pred EEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
||+..+ ...++.+.+ |.+.|.++ |-.....+++++.|+.|++|++.....+.++.+|.+ .|..|.-..-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999985 678888999 99999999 776777899999999999999998888999999966 78888887788888888
Q ss_pred eCCCcEEEEeCCC
Q 028806 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+++++|++..
T Consensus 305 grDrT~rlwKi~e 317 (479)
T KOG0299|consen 305 GRDRTVRLWKIPE 317 (479)
T ss_pred cccceeEEEeccc
Confidence 8999999999943
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.7e-17 Score=129.11 Aligned_cols=153 Identities=12% Similarity=0.212 Sum_probs=123.2
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCC-eE----EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc----
Q 028806 3 FAADAMKLLG--TSGDGTLSVCNLRKN-TV----QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
|+.+.+.+|+ ++.-|.|-||++... ++ +-.+. ....|+.+.|.| |...|++++.||.|++|.+...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444455544 344689999999753 21 11222 356799999999 77899999999999999996533
Q ss_pred --ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 71 --DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 --~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+...++. |...|+++ |+| -...|++++.|-+|++||+++++....+.+|++ .|..++|+|+|+.+++.+.||+
T Consensus 666 ~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 666 EMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCce
Confidence 23445677 89999999 998 457888999999999999999999999999987 8999999999999999999999
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++|..+..++.
T Consensus 744 ~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 744 LRVYEPRSREQP 755 (1012)
T ss_pred EEEeCCCCCCCc
Confidence 999999887654
No 131
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=6.1e-16 Score=113.25 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeeccCC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.+.|+++-. ..|+|||+.+.+++.++.. +...+..+.+++.+.+++.-+ ..|.|.+||+.+ -..+..+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 445666555 4599999999988887753 344566666666667887643 368999999975 467778888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++.++ |+++|.+|++++..|+ |+|+.+.+|+.+..++.... ..|.+++|+|++++|++.+..++|++|.+....
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 9999999999999987 89999999999999976643 268899999999999999999999999997765
No 132
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=116.13 Aligned_cols=146 Identities=14% Similarity=0.226 Sum_probs=113.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccccee-eeccCCC-c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPN-S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-~ 83 (203)
..+|++-..|.|++||..+++.+..++++...+..++|.. ....+.+++.||+|++||++...+.-+. +.. +.+ +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 4578888889999999999999999999999999999987 5678999999999999999865443332 233 332 3
Q ss_pred eeEE-EeeCCCEEEEEcC----CCcEEEEEccCCce-eeee-ccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 84 VDAL-LKLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..++ .+-.++.+++|+. +-.|.+||++..+. +..+ ..|.+ .|+++.|+|.. +.|++|+.||.|.+||+...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3344 3446777777764 45689999998665 4444 56655 89999999955 78999999999999999765
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=1.8e-17 Score=128.97 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=123.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
+.|.| |...||+++.||.|++|.+..+ .+...++.|...|+++.|+| -...|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 35777 6678999999999999998753 34467788999999999999 446889999999999999985 45
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCC----C
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~ 145 (203)
....+.+ |...|..+ |+|+|+.+++.+.||+|++|..++++ ++..-.+.-+..--.|.|..+|+++++.+.| +
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6677889 99999999 99999999999999999999988764 3333333222234568899999999887755 4
Q ss_pred cEEEEeCCCcc
Q 028806 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|.+||..+..
T Consensus 791 Qv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 791 QVQMYDAQTLD 801 (1012)
T ss_pred hhhhhhhhhcc
Confidence 58888876554
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=119.96 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=113.1
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCc----
Q 028806 1 MTFAADA--MKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~---- 69 (203)
|+|+|.. +++|+|..-|.|-+||+.+. ..+..+..|..+|.+|.|+|. ...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788865 47888999999999999532 234566789999999999994 467888888999888776421
Q ss_pred ----------------------------------------cccceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEE
Q 028806 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (203)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~ 107 (203)
+.....+.. |...|..+ ++|. ..+|++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111111222 55578888 7885 4568899999999999
Q ss_pred EccCCc----eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 108 GILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 108 d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|++.-. ++.....|.. .|.++.|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 998532 2233445644 89999999988779999999999999984
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=119.86 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~ 74 (203)
++|+.+++.|++++.+|.|.+||++...++..+.... -.-++++.++++.+|++|+..|.|.|||..+ ...++.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 4689999999999999999999999988887775422 2235677788999999999999999999642 234555
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCC--CceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.+.. -...|.++ |+|+..+|+.++. ...+++..+.+......++.... ..++||+|+|.+-+||.|...|.+.+
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 5555 56688999 9999999998876 56789888877665555543321 36899999999999999999999999
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9874
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=2.1e-15 Score=112.70 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=113.7
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++.+ ++++.++.|++|++.+++.+..+..+.. +..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999876 5667889999999999887776665433 5678999999877655 5689999999975 344555543
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
...+..+ |+|++.+++++..++ .+.+||..+++.+..+... . .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2345667 899999999888765 4677898887766554433 2 457899999999886554 6899999999887
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 137
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=2.2e-16 Score=112.46 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=121.2
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+||| +|+.+++. .|++++.||+++......++ .|...|..+.|+|+.+ +|++++.||.|++||.+..+.++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5887 67777776 56999999999876655554 6888999999999764 678899999999999998888999999
Q ss_pred ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-----------------------------ceeeeeccCCCCce
Q 028806 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (203)
+ |...++++ |+|. ..+|++++.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 9884 567889999999999875320 12345566755 79
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEeCCCcc
Q 028806 127 ESLALSHDRK-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 127 ~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++|+.-.. .+|+-+.||.+.|=.+....
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~~ 364 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRFL 364 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChhh
Confidence 9999988555 56788899999887665443
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=8.1e-17 Score=122.03 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=114.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEE----------------------------------------
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV---------------------------------------- 44 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~---------------------------------------- 44 (203)
....++++|+..+.|+|||++...+.+.++.|...|+++.
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 3457899999999999999986555555555555555544
Q ss_pred ---EeeCCC-EEEEecCCCeEEEEEcCCcccccee-eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeee
Q 028806 45 ---LMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 45 ---~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~ 117 (203)
++|..+ +|.+++.+|.|.+||+.. ..+... ... |..+...+ |+|. ..+|++.+.|..|.+||.++......
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccC-CCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 444332 455678889999999864 344433 344 88888888 8885 56677889999999999998777777
Q ss_pred eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.... +...++|.++|.+|+.|...|.|..||++.....
T Consensus 247 l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 247 LTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 76542 7899999999999999999999999999876543
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=3.6e-16 Score=122.37 Aligned_cols=140 Identities=13% Similarity=0.183 Sum_probs=120.1
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
|++ .+++|+.|.+|++|.- ++.+.++.+|...|+.+++.+++ .|++++.||.|++|++. +.++..+.+ |..-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 8899999999999985 67888999999999999999765 57889999999999994 688888999 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++ ..+++..+++++.|+++++|+.. ++.+.+...+. .|+++.+-++|. |++|+.||.|+||..+.-
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999 68888999999999999999965 67777776644 799999998886 467778999999987643
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5e-16 Score=124.85 Aligned_cols=154 Identities=18% Similarity=0.295 Sum_probs=128.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|+|.|+|++|++++.||.|++|+.... .....+..+...|.+++. .+.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 468999999999999999999997654 333344446677777765 456999999999999999974 333334444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..-+++++ ++.+|++++.|+.|-.|++.++........+++|.. +|.++.|+|++.+||+.+.||.|++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 56688888 899999999999999999999999999999999955 9999999999999999999999999999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 174 ~ 174 (933)
T KOG1274|consen 174 K 174 (933)
T ss_pred h
Confidence 3
No 141
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=114.47 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=118.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeE--E-Eee----cCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--Q-TRS----EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~-~~~~~--~-~~~----~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|+|+|||.+|++|.. ..|+|+|+ +.|+. + .++ .+..+.|.+++|+|- ...+++++.-..+-+|.-. ...
T Consensus 164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 579999999998754 89999999 44421 1 111 133567899999994 4588999988888887765 467
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-CceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCC
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
++..+-+ |.+.|+.+ |.++|+.|++|.. +-.|..||++. ..++..+..|.+ .+| -....|.+++|++|+.||
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG 319 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCc
Confidence 8888889 99999999 9999999999987 56799999985 456666666643 133 346678999999999999
Q ss_pred cEEEEeCCCcc
Q 028806 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|++||+...-
T Consensus 320 ~V~vwdlk~~g 330 (406)
T KOG2919|consen 320 SVRVWDLKDLG 330 (406)
T ss_pred cEEEEecCCCC
Confidence 99999998843
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=5.6e-17 Score=119.61 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=108.9
Q ss_pred eecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc------ccceeeeccCCCceeEE-EeeC-CCEEEEEcCCC
Q 028806 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~ 102 (203)
.+.+|.++|..++|+| +.+.+++|+.|.+|.||.+...+ .++..+.+ |...|..+ |+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 4458999999999999 45778899999999999996432 44567788 99999988 9985 56788999999
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.|.+|++.+|+.+.++. |.+ -|+++.|+.+|.+|++.+.|..|+|||.+++..-++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999999988887 766 799999999999999999999999999999876544
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=4e-16 Score=111.71 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=117.9
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+++-...+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.....+.-...-..
T Consensus 102 ~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 102 YSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred eeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence 455567899999999999999987555555544 347888765 47789999999999999998755444332221456
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCC--------CceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.++++ +.|++.-+++++.+|.|.+=.+... +....++.|.. .+|.+|+|+|--..|+||+.||.|.+
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 78899 7899999999999999988766654 34455666642 37999999999899999999999999
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||+.+...
T Consensus 259 Wd~~~rKr 266 (323)
T KOG1036|consen 259 WDLFNRKR 266 (323)
T ss_pred ccCcchhh
Confidence 99977653
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=6.6e-17 Score=118.08 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=120.2
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+|.. ..+++|+.||.|++||+.+..+..+++.|.+.|..|++.. ..+++++.|.+|+.|.+. +.+++++.+ ..
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~--~~p~~tilg--~s 148 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID--GPPLHTILG--KS 148 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc--CCcceeeec--cc
Confidence 4444 5689999999999999999999999999999999999976 678899999999999986 356666664 45
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+..+ -+..+..+++++. .|.|||.+-..++..+.-..+ .|.++.|+|... .|++++.|+.|.+||+++..+-.
T Consensus 149 ~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 149 VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred cccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 55666 4556677777776 488999988888888887766 799999999764 56777799999999999887653
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8e-16 Score=115.51 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=123.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~------- 70 (203)
|.|+|....|++++.|++++||.+.. +..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46899999999999999999999864 455666666678999999999998 88889999999999996421
Q ss_pred -----ccceeee-----------c-------------------cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 71 -----DCSDRFV-----------G-------------------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
+.++.|. + -..+.+..+ |+.+++.|++++.+|.|.+||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 0 013456777 889999999999999999999999988
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..+.....-.-++++.++++.|||+|+..|.|.|||..+..
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 888876533244678888999999999999999999965543
No 146
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-16 Score=111.50 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=118.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEeeCC--CEEEEecCCCeEEEEEcCCcc-c-cceeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFK-D-CSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~-~-~~~~~~~~ 79 (203)
-|.+||+++.||.|.||.-.+++- ......|...|++++|.|.+ -.|++++.||.|.+.+++..+ - .......
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 588999999999999999887732 34556789999999999864 678899999999999997642 2 2233455
Q ss_pred CCCceeEE-EeeC---C-----------CEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCC----CeE
Q 028806 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (203)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~----~~l 138 (203)
|.-.+.++ |.|. | +.|++|+.|..|+||...+++ ....+.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 7664 4 569999999999999988763 3355889977 79999999953 579
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||++.||-.+
T Consensus 227 AS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKD 241 (299)
T ss_pred EEecCCCcEEEEEec
Confidence 999999999999876
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=119.11 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
|+|+ ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.++.++.....-... .+..
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r- 152 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR- 152 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-
Confidence 4687 466788888899999999999999999988889999999999999999999999888887754222222 2333
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
..+.+.++ |+|++..|+.|+.||.|++||...+..+.... ... ..-|+++.|-.+ ..|++|..-|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 56889999 99999999999999999999999887766322 111 124677777755 5788999999999999
Q ss_pred CCCcccCCCCCC
Q 028806 152 LDDILKGSGNNI 163 (203)
Q Consensus 152 ~~~~~~~~~~~~ 163 (203)
...+...+....
T Consensus 232 ~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 232 SIFGTLIQSHSC 243 (691)
T ss_pred ccCcchhhhhhh
Confidence 988887766543
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=5.4e-16 Score=120.49 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=116.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------ 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~------ 71 (203)
+.|-|....|++++.|.++++||+.++.+... +.+|...|.+++|+|.. ..|++|+.||.|.|||++-.+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 46778556889999999999999999887765 78999999999999955 6788999999999999974320
Q ss_pred -------------cceee-------eccCCCc----eeEEEeeCCCEEEEEcC-CCcEEEEEccCCce------eee--e
Q 028806 72 -------------CSDRF-------VGLSPNS----VDALLKLDEDRVITGSE-NGLISLVGILPNRI------IQP--I 118 (203)
Q Consensus 72 -------------~~~~~-------~~~~~~~----v~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~------~~~--~ 118 (203)
+...+ .. +... |+.++..|...|++++. |+.|+|||++.... ... +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 00000 11 2222 44457889999998887 99999999986432 221 2
Q ss_pred ccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 119 AEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|. ...+.++.....|.+|++.+.|+.|++|++++....
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 2221 125778888888899998889999999999887544
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=112.45 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=113.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c-----ccceeee
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K-----DCSDRFV 77 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~-----~~~~~~~ 77 (203)
-.+++|++++.|..|.+|++. |+.+..+.......+..+.+|+|+++++++..--+++|.+-.. + .-+..+.
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 356799999999999999998 8888888877777888899999999999999899999987421 1 1234568
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-------------C---------cee-------------------
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-------------N---------RII------------------- 115 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-------------~---------~~~------------------- 115 (203)
+ |...|..+ |+++...+++.+.||.+++||..- + .++
T Consensus 276 G-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 G-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred c-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 8 99999999 999999999999999999999731 1 000
Q ss_pred eeec------------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 116 QPIA------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 116 ~~~~------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.+. .|. ..|.+++|+++|+++++++ |+.++++-
T Consensus 355 ~~~~se~g~~~~~~e~~h~-~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHS-TTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEEcccCccchhHHHhhc-CceeeEEecCCCcEEeeec-ceeeeeec
Confidence 0000 132 3699999999999999987 77888764
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1e-15 Score=110.70 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=113.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc------
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------ 70 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------ 70 (203)
|.|.|+. ++|++++.|.+|++|++++..++..+ .+|...|.++.|++++.++++++.|.++++|++....
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 3567754 68899999999999999999988776 5799999999999999999999999999999996210
Q ss_pred ------------------ccceee--------------------------------------------ec----------
Q 028806 71 ------------------DCSDRF--------------------------------------------VG---------- 78 (203)
Q Consensus 71 ------------------~~~~~~--------------------------------------------~~---------- 78 (203)
...-.+ ..
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 000000 00
Q ss_pred --cCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 79 --LSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 --~~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....++-+ |.|-++.|+.|...|.|.+||++...+. .++..+ ....|...+|+.++..|+..+.|+.|--|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 011123333 2455667888999999999999876552 122111 12378999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|..
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 864
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=110.58 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=114.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeE----------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cce-e
Q 028806 9 KLLGTSGDGTLSVCNLRKNTV----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSD-R 75 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~-~ 75 (203)
++++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++++.+-.+.+|.+..... .+. .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 457788899999999998733 233346888999999987555557777778889998864311 111 1
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
... ....+..+ .-||++.+++++.|+.|+||+-++..++..+..|.. .|.+++|+|+...+|.++.|..|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 34456777 899999999999999999999999999999999975 8999999999999999999999999986
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=2.4e-16 Score=116.53 Aligned_cols=153 Identities=16% Similarity=0.282 Sum_probs=126.5
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCC---------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-- 69 (203)
.|.++.. .+++|+.|..|++|-+..+ ..+..+..|...|+.+.|+|+|.+|++|+.+|.+.+|.....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555555 8999999999999988642 234567789999999999999999999999999999977510
Q ss_pred ----------c---ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 70 ----------K---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 70 ----------~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
. .....+.+ |...++.+ |+|++.++++++.|..+++||+..|..+..+..|.. -+..++|.|-.
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 0 11234456 77888889 999999999999999999999999999999999955 68999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028806 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++++-+.|...+++.+...+
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hhhhhhccCcccceeeeeeee
Confidence 999999999877777665433
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=8.5e-15 Score=109.46 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+.. +.....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 3578899999999999999988888777554 46789999999876 5667789999999874 344444544 333 34
Q ss_pred EE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028806 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
.+ ++|+++.+++++ .++.|++||+.+++.+..+..+ . .+.+++|+|++.+++++..++ .+.+||..++..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 55 899999876654 5889999999988877777544 2 468899999999999888664 567789876543
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=8.4e-16 Score=120.36 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=120.9
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---
Q 028806 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--- 72 (203)
++.||+++++|++... ..|++|+..+....+.+.+|.-.|+.|+|+||+++|++.+.|.++.+|.....-..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 4678999999998653 46999999988778889999999999999999999999999999999988532111
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeee--eccCCCCceEEEEEeC----CCC-eEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSH----DRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~--~~~~~~~~i~~i~~~~----~~~-~l~~~~ 142 (203)
....+. |..-|+.+ |+|++.++++++.|..|++|..... +.+.. ...+.. +|++++|.| +.. .+++|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 122456 88889999 9999999999999999999998766 33333 223323 899999987 222 566777
Q ss_pred CCCcEEEEeCC
Q 028806 143 HDSMLKLWDLD 153 (203)
Q Consensus 143 ~d~~i~iwd~~ 153 (203)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 89999999865
No 155
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.2e-15 Score=111.07 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=124.8
Q ss_pred EEEEEcCC--CeEEEEEcCCCeEEEeecCC---------ccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcccccee
Q 028806 9 KLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 9 ~l~~~~~d--~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
.+++|+.. ..+.+||+...+.+..-+.. .-.++++.|.+. ...|++++.-+.+++||.+...+++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45668887 78999999987665544321 234678888887 789999999999999999988888888
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|.- ...++.++ ..|.++.|++|...+.+..+|++.++.+.. +.+-++ .|+++..+|..++|++++.|+.++|+|+.
T Consensus 243 fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 243 FDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecc
Confidence 887 78899999 899999999999999999999999988877 666655 89999999999999999999999999998
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
+..
T Consensus 321 trk 323 (412)
T KOG3881|consen 321 TRK 323 (412)
T ss_pred cch
Confidence 843
No 156
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=2.8e-16 Score=118.08 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=131.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------------------------------------CccceEEE
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------------------------~~~~v~~~ 43 (203)
.++.+|++|+.|+.-|.|-.+|..++.+...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 4677899999999999999999888766544311 12345667
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028806 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 122 (203)
.|.|..-+|++++..|.++.-|+.+ +..+..+.. ..+.+..+ -+|-+..+-+|...|+|.+|...+.+++..+.+|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 7888888889999999999999975 677777776 67777777 79999999999999999999999999999999996
Q ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 ~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ +|.+|++.++|+|++|.+.|+.++|||+++..+-+.
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 6 999999999999999999999999999999875543
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2e-15 Score=115.78 Aligned_cols=109 Identities=26% Similarity=0.316 Sum_probs=93.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-- 70 (203)
++|.|-...|++++.||+|.+|+++. -+++.++.+|.++|.|++..+++..+++|+.||+|+.|.+....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 46778888999999999999999932 15678899999999999999999999999999999999765221
Q ss_pred -------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028806 71 -------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 71 -------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~ 110 (203)
.....+.+ |...++.+ +++....|++++.||++++|...
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC
Confidence 23446788 99999999 78888889999999999999864
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.7e-15 Score=106.98 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=116.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec--c
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~ 79 (203)
+-++|.+++-|.+..|||++++. ....+-.|...|..++|...+ ..|++.+.||.+++||++.. ..-..+.. .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-eHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-EHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-ccceEEecCCC
Confidence 45789999999999999999862 355667899999999999865 57889999999999999853 33333322 0
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCC-CcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSEN-GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d-~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
...+...+ |++ +.+++++-..| ..|.+.|++. ..++..++.|.. .|..++|.|.. .+|++++.|....+||+.+
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 12345556 655 56677765544 5699999984 678899999955 89999999954 6899999999999999987
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 665
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=109.37 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=118.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|||- .+.++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|.+||++..+.++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 468885 458899999889999988888888899999999999999999999999986 678999999988888777776
Q ss_pred cCCC-ceeEE-E--eeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 79 LSPN-SVDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 79 ~~~~-~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
|.. .-..+ | .|++++|++|+.+|.|++||+.. +.....+..+.. .+..++++|-=.++++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 665 22333 5 78999999999999999999987 776777777755 78999999997778877643
No 160
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=113.20 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=118.5
Q ss_pred CEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++++++.. -..|.+|.+..........--.++|.+++-+|.|.+|+.|+-.+.|++|.+.+ +..+..+.. |-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 35555532 34688888865433332222457899999999999999998999999999974 788888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEcc---------CCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~---------~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |+-+|.+|++|+.||.|.+|.+. +-+++..+..|+- +|+.+...+.| .+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 2356788888966 89999887754 6899999999999999988
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 208 g~ 209 (476)
T KOG0646|consen 208 GV 209 (476)
T ss_pred ce
Confidence 74
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.66 E-value=1.1e-14 Score=110.78 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=118.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++++.|+.+++|+ ..++..+.. -..++.++.|+|.| .++.|...|...+.|..+ ..+-.+.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35688899999999999999999 445554433 25678999999999 999999999999999875 33444554 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +........+...+|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 7788999 999999999999999999999864 44444444444468999999999999999999999999943
No 162
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.8e-14 Score=102.51 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=111.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~----- 69 (203)
+.|.+-|+.+|+|+.|.+|+|||... ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 46888999999999999999999653 245667788999999999976 5789999999999999975211
Q ss_pred cc---cceeeeccCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccC--------------------------------
Q 028806 70 KD---CSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILP-------------------------------- 111 (203)
Q Consensus 70 ~~---~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~-------------------------------- 111 (203)
+. ...++.. ....|+.+ |.| -|-.+++++.||.|+||+...
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 11 1223444 55677778 766 466777888888888876421
Q ss_pred -------------------------------C----ceeeeeccCCCCceEEEEEeCCC----CeEEEEeCCCcEEEEeC
Q 028806 112 -------------------------------N----RIIQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 112 -------------------------------~----~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~iwd~ 152 (203)
+ ..+.++..|+. +|+.++|.|+- ..||+++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 0 01122234544 89999999952 4688999999 999999
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 7544
No 163
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=5.5e-15 Score=106.59 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~ 75 (203)
.+|++|+..+|.+.....|.||..... +...++..|...|+.+.|+|..+.|++++.|...++|.....+ .+.-.
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999998754 5677888999999999999999999999999999999984322 12223
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.. +....+++ |+|.++.|++|+..+.|.||-++..+-- +.+...-...|.++.|+|++-+|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 334 67788999 9999999999999999999988653321 111111123689999999999999999999999996
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.8e-15 Score=110.81 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=114.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEe------------------ecCCccceEEEEEeeC-CCEEEEecCCCeEEE
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTR------------------SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLL 63 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~---~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~ 63 (203)
.|+++|.|+.+..|.|||+.--. +... -.+|...|..++|+.. .+.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46899999999999999986210 0011 1257777888888864 468899999999999
Q ss_pred EEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCC-eEE
Q 028806 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLG 139 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~ 139 (203)
||+.+ +.+...+.. |...|.++ |+| .+.+|++|+.|++|.+.|.+. +..-..++.. + .|-.++|+|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99985 688888888 99999999 877 577899999999999999984 2222334333 2 689999999764 566
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028806 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
++..||.++-+|+|+..
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 66789999999999875
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.63 E-value=4.4e-15 Score=117.23 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=115.8
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEE-ee---------------------------------cCCccceEEEEEeeCCCE
Q 028806 9 KLLGTSGDGTLSVCNLRKN---TVQT-RS---------------------------------EFSEEELTSVVLMKNGRK 51 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~---~~~~-~~---------------------------------~~~~~~v~~~~~~~~~~~ 51 (203)
.+++++.|++|++|++..+ ...+ .+ -.....+++++.+|++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788999999999998752 1110 00 012346899999999999
Q ss_pred EEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Ee-e--CCCEEEEEcCCCcEEEEEccC-CceeeeeccC-----
Q 028806 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK-L--DEDRVITGSENGLISLVGILP-NRIIQPIAEH----- 121 (203)
Q Consensus 52 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~-~--~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~----- 121 (203)
|++|..-|++++|++.. -.....+.. |...|.|+ |+ | ..++|++++.|+.|+|||+.. ..+++++.+|
T Consensus 474 LAsGDr~GnlrVy~Lq~-l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQE-LEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehh-hhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999975 345556677 99999999 74 4 457899999999999999742 1111222111
Q ss_pred ---------------------------------------C----CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 122 ---------------------------------------S----EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ---------------------------------------~----~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ...++.|+..|...++++++.|+.|+||++.++.+.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 0 014778888899999999999999999999999988
Q ss_pred CCCCCC
Q 028806 159 SGNNIS 164 (203)
Q Consensus 159 ~~~~~~ 164 (203)
..++..
T Consensus 632 k~FKgs 637 (1080)
T KOG1408|consen 632 KSFKGS 637 (1080)
T ss_pred eeeccc
Confidence 777654
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=106.76 Aligned_cols=155 Identities=26% Similarity=0.396 Sum_probs=125.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce-eee
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~-~~~ 77 (203)
++|+|+++.+++++. ++.+++|+...+..+..+..|...+.+++|+|++. .+++++.|+.+++||.. .+..+. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999988 55555899999999887 345555 466
Q ss_pred ccCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCce-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 78 GLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. |.... . .|+|++..+++++.++.+++|++..... +..+..|.. .+.++.|+|++..+++++.|+.+.+|++.+.
T Consensus 240 ~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 240 G-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred C-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 6 66554 3 4899998899999999999999986654 444455634 8999999998888888888888999988776
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
....
T Consensus 317 ~~~~ 320 (466)
T COG2319 317 KLLS 320 (466)
T ss_pred ceEE
Confidence 6443
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-15 Score=125.04 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=116.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee--cCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|.|++.+. .||+|+.+|.|.|||+...+.-... ....+.|.+++|+.. .+.|++++.+|.+.|||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 46888654 9999999999999999864332222 124567999999874 467888889999999999864 444444
Q ss_pred eccCCC--ceeEE-EeeCCC-EEEEEcCC---CcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcE
Q 028806 77 VGLSPN--SVDAL-LKLDED-RVITGSEN---GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~-~l~~~~~d---~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i 147 (203)
.. +.. .+..+ |+|+.. .|++++.| -.|.+||+|. ..+++++++|.. .|.++.|++.+ ++|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 43 333 35566 999764 45555554 3599999985 457788888965 79999999966 889999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+|+..+++.-
T Consensus 279 i~wN~~tgEvl 289 (1049)
T KOG0307|consen 279 ICWNPNTGEVL 289 (1049)
T ss_pred eEecCCCceEe
Confidence 99999996544
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.8e-14 Score=103.75 Aligned_cols=151 Identities=16% Similarity=0.297 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEE--eecCCc-cceEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
...+.+|+.||+|++||++...... ..+.+. .+..+++.+..++.+++|.. +-.+.+||++...+.+..+...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 4568899999999999999754332 333443 46778887777788888764 5689999999776655555433
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
|...|+++ |+| +.++|++|+.||.|.|||+.... .+.++.. ...|.++.|..++ ..|.+.+..+...+|++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc--cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 99999999 998 56889999999999999986432 2333433 2369999999887 45888889999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
..+.+..
T Consensus 242 e~~~~~~ 248 (376)
T KOG1188|consen 242 EDGSEET 248 (376)
T ss_pred cCCChhh
Confidence 8777443
No 169
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=8.7e-15 Score=111.99 Aligned_cols=94 Identities=14% Similarity=0.246 Sum_probs=83.4
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
.+.|...+|+|||++|++.+.||.++|||+.+ ...+..++. .-+...|+ |+|||++|++|+.|-.|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 35688999999999999999999999999974 466666777 77788888 9999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEEeC
Q 028806 116 QPIAEHSEYPIESLALSH 133 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~ 133 (203)
..-.+|.. +|..++|.|
T Consensus 368 ARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred Eecccccc-ceeeEeecc
Confidence 99999955 899999983
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.61 E-value=7.1e-14 Score=101.28 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=115.2
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEEeec--CCccceEEEEEeeCC----CEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 9 KLLGTSGDGTLSVCNLRKN---TVQTRSE--FSEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.+++.+ .+.+.+|..... ..++... .+......++|+-+. .+++.++.-|.|++.|+. .+.+...+.+
T Consensus 57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~~g- 133 (385)
T KOG1034|consen 57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNYRG- 133 (385)
T ss_pred eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccceec-
Confidence 344444 467888887642 3333332 356677888887643 478888899999999997 4677888899
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...|..+ ++|. .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|+++|.+|++++.|.+|++|++..
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999 8885 578999999999999999999998876 45655 799999999999999999999999999974
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 43
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.1e-14 Score=103.56 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=93.6
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
..++.|++.|.+|++|+.+|.|.+||+.+. ..-+.+.+ |..+|.++ |+++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 788999999999999999999999999863 56667788 99999999 9999999999999999999999999999988
Q ss_pred ccCCCCceEEEEEeCCCCe-EEEEeCCCcEEEEeCCC
Q 028806 119 AEHSEYPIESLALSHDRKF-LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~iwd~~~ 154 (203)
+-. . +|+.+.|+|..+. .++.-.+..-.+-++..
T Consensus 104 rf~-s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 104 RFD-S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred Ecc-C-ccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 876 3 8999999996543 33333455566666654
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.7e-15 Score=116.06 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|...+|++++. ..|+|||+....++..+......|..++++|.|..|+.++.|+.+..||+..+..+.+++.. |
T Consensus 572 v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 368898888888877 78999999887777777766788999999999999999999999999999877788888888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------CC---ceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCCcE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~------~~---~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
...++++ |++.-.++++|+.||.+.|+.-. .. -++..+++|.. ..|..+.|+|...+|++++.||+|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 9999999 99999999999999999887532 11 24577788753 147788899999999999999999
Q ss_pred EEE
Q 028806 148 KLW 150 (203)
Q Consensus 148 ~iw 150 (203)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
No 173
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.8e-13 Score=97.76 Aligned_cols=148 Identities=17% Similarity=0.219 Sum_probs=111.0
Q ss_pred CEEEEEcCCCeEEEEEcCC-CeEEEeecCC--ccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccc-cceeeeccCCC
Q 028806 8 MKLLGTSGDGTLSVCNLRK-NTVQTRSEFS--EEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~-~~~~~~~~~~~ 82 (203)
..|++. ..+.|+||...+ .+.+..++.. ...+.++.-+....+|+. |-.-|.|.+-|+..... .-..+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 344444 347899999884 4555544422 233544443334455555 34579999999974322 2356777 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.|+ .+-+|..+++++..|+ |+|||..+|..+..++...+ ..|++|+|+|+..+|++++..|++.||.++....
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99999 8999999999999997 89999999999999876543 3799999999999999999999999999976543
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.60 E-value=2.1e-14 Score=111.76 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=112.7
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee--eecc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGL 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~ 79 (203)
..|+.+..+|.|.++|...-.. +.....|...|..+.|.|....|++++.|.++++||+... .+... +.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G- 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG- 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc-
Confidence 4678899999999999865322 2444578999999999997788999999999999999753 44443 778
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc--------------------ee-------eeeccCCCCceEE--
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------II-------QPIAEHSEYPIES-- 128 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~--------------------~~-------~~~~~~~~~~i~~-- 128 (203)
|...+.++ |.| +...+++|+.||.|.|||++... +. ....++.. .|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssv 221 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSV 221 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeee
Confidence 99999998 877 45678899999999999986322 00 01112211 3555
Q ss_pred -EEEeCCCCeEEEEeC-CCcEEEEeCCCcccCC
Q 028806 129 -LALSHDRKFLGSISH-DSMLKLWDLDDILKGS 159 (203)
Q Consensus 129 -i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 159 (203)
+.+..|...||+++. |+.|+|||++......
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 666778889998886 9999999999876543
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.9e-14 Score=110.01 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeE--EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~ 74 (203)
++|||+|+.|++++.+ ..|++|++.+++. +..+.+ ....++|+|+|+.|+++. .++.+.+|.+........
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4799999999887643 4799999988754 223333 344689999999888764 577666664432233445
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. +...+... |+|+|+.|+.++ .++...||++... .....+ .+ . . ....|+|+|++|++.+.+ .+.+||
T Consensus 286 ~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~-~-~~~~~SpDG~~ia~~~~~-~i~~~D 359 (429)
T PRK01742 286 QLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-R-G-YSAQISADGKTLVMINGD-NVVKQD 359 (429)
T ss_pred eecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-C-C-CCccCCCCCCEEEEEcCC-CEEEEE
Confidence 5665 55566667 999999877655 5678888876532 222223 33 2 2 457899999999888765 466699
Q ss_pred CCCccc
Q 028806 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+.++..
T Consensus 360 l~~g~~ 365 (429)
T PRK01742 360 LTSGST 365 (429)
T ss_pred CCCCCe
Confidence 987653
No 176
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.59 E-value=2.4e-13 Score=103.58 Aligned_cols=150 Identities=14% Similarity=0.258 Sum_probs=99.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc---------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------- 71 (203)
|+|.++|. +++|..+|.|.||+..+.+..+....|.+.|.++....+|.+|- |+.|..|..||-.....
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 45777764 67788889999999887777666668888888888888876555 88888888887421100
Q ss_pred -ccee-----------------------------eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE------------
Q 028806 72 -CSDR-----------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG------------ 108 (203)
Q Consensus 72 -~~~~-----------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d------------ 108 (203)
.+++ ..+ |....+.+ .+|+.+.+++++.|+.+++|+
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe-cccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 0000 012 33334444 355555666666666666655
Q ss_pred --------------------------ccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 109 --------------------------ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 109 --------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++...+..-.. ..++.++.|+|+|.+||.|+.|+.|+||-+...
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 333222222222 238999999999999999999999999987544
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.3e-13 Score=97.93 Aligned_cols=144 Identities=14% Similarity=0.207 Sum_probs=108.7
Q ss_pred CCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc----
Q 028806 7 AMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD---- 71 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~---- 71 (203)
|+.+|+++.|+++.||.-.. .....++....+.|+.+.|.|. |-.|++++.||.++||+......
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 78999999999999997521 1234466667788999999984 56889999999999997742100
Q ss_pred --------------------------------------------------------------cceeeeccCCCceeEE-E
Q 028806 72 --------------------------------------------------------------CSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 72 --------------------------------------------------------------~~~~~~~~~~~~v~~~-~ 88 (203)
.+..+.. +..+|+.+ |
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~w 231 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISW 231 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeee
Confidence 0001123 56788888 8
Q ss_pred eeC----CCEEEEEcCCCcEEEEEccCC--------------------ceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 89 KLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 89 ~~~----~~~l~~~~~d~~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.|. -..|++++.|| |+||.+... +.+..+..|.. .|+.+.|+-.|..|++.+.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 774 35788999999 999998731 13344667744 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028806 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
|.+++|...
T Consensus 310 G~VRLWkan 318 (361)
T KOG2445|consen 310 GCVRLWKAN 318 (361)
T ss_pred ceeeehhhh
Confidence 999999754
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3.5e-14 Score=108.94 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=92.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+|+|.-|++++.||.|++|. ++|-+..++.....+|+|++|.|+.+.++.+.. +.+.+=.+.. ...+-.... |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc-ccceeEEec-cC
Confidence 5999999999999999999999 445454555566788999999998877766543 4566655543 233445677 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 134 (203)
+-|.++ |++..++|++|+.|...++||-. |..+..-..| +.+|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999953 4444333333 223444444443
No 179
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.7e-13 Score=105.23 Aligned_cols=153 Identities=17% Similarity=0.093 Sum_probs=102.2
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||+|+.|+..+.. ..|++||+.+++... +......+...+|+|||+.|+ +.+.++...+|.+.........+.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 699999999877642 469999999886543 333344567889999998876 456777767776543333445555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEc--cCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~iw 150 (203)
. +....... |+|+|+.|+..+. .+...+|.+ .++...... .... ......|+|+|++|+..+.++ .|.+|
T Consensus 281 ~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 281 Q-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred C-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCC-CcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 4 44444555 9999999887654 455666654 444433222 2212 344678999999998776544 69999
Q ss_pred eCCCcccC
Q 028806 151 DLDDILKG 158 (203)
Q Consensus 151 d~~~~~~~ 158 (203)
|+.++...
T Consensus 358 d~~~g~~~ 365 (427)
T PRK02889 358 DLATGQVT 365 (427)
T ss_pred ECCCCCeE
Confidence 99876543
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.1e-14 Score=119.65 Aligned_cols=154 Identities=9% Similarity=0.128 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeCC-CEEEEecCC---CeEEEEEcCCccccc
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---~~i~~wd~~~~~~~~ 73 (203)
|+|+..- ..|++++.+|.+.|||++..+.+..+..+. ..+..++|+|+. ..+++++.| -.|.+||++.....+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 3566544 357888899999999999887666555443 347789999976 456666654 479999999877888
Q ss_pred eeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEE
Q 028806 74 DRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLW 150 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iw 150 (203)
+.+.+ |...|.++ |++.+ .++++++.|+.|.+|+.++++.+..+..... .+..+.|.|... .++.++.||.|-||
T Consensus 247 k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeee
Confidence 89999 99999999 87755 8889999999999999999999999988644 899999999765 77888899999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
.+.+..
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987765
No 181
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=9.4e-14 Score=113.28 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=129.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
++++.-++++|+--+.|.+|.....+....+.+|.+.|.++.|+-+|+++++.+.|.++++|++.+.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4556668888888999999998743333367899999999999999999999999999999999865444446677 899
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.++.+ |.|. .+++++.|.+.++|+. .+..+..+..|....|+.++..++...+++++.|+.+++|++.+...+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 99988 8887 9999999999999974 46667788888777899999999999999999999999999877665533
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.9e-14 Score=108.96 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=117.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCc--------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~-------- 69 (203)
|+|+.+|.+|++|+.|-.+.|||....+++..+ ++|...|.++.|-| +.+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877766555 58999999999998 4578899999999999999731
Q ss_pred -cccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-------eeeeec-cCCC-CceEEEEEeCCC-C
Q 028806 70 -KDCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-------IIQPIA-EHSE-YPIESLALSHDR-K 136 (203)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~-------~~~~~~-~~~~-~~i~~i~~~~~~-~ 136 (203)
......+.. |...|..+ -.|++ +.+.+++.||+|+-||++... +...+. .+.. -...++.++|.. .
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 122333455 66677777 46666 788999999999999998521 111111 1101 146789999965 5
Q ss_pred eEEEEeCCCcEEEEeCCCcc
Q 028806 137 FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|++|+.|--.++||.+...
T Consensus 215 ~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred eEEecCCCchhhhhhhhhhc
Confidence 78899999999999965443
No 183
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.54 E-value=5.1e-13 Score=107.00 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=124.1
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.|+.|+..|.+.+|++++++.+.++.++...|+++.=+|--..++.|..+|+|.+++++. .+.+..|+. ..+.|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~-d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ-DWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc-cccceeEE
Confidence 5688999999999999999999999999999999999888888999999999999999985 577888885 46999999
Q ss_pred -EeeCCCEEE-EEcCCCcEEEEEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 88 -LKLDEDRVI-TGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 -~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|..||+.++ +|+..|.+.+||++..+.+..++ .|.+ .|....|-|....|++++.|+.+++|=..
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCceeEEEee
Confidence 988887655 56667999999999887776665 6644 78999999999999999999998888555
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.3e-13 Score=107.08 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=102.0
Q ss_pred CcccccCCEEEEEc-CCCeEEEE--EcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|||+.|+++. .+|.+.|| ++.++.. ..+..+...+..+.|+|+++.|+.++ .++...+|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 36999999888764 57765554 6665554 45556666788899999999877554 57888888875433333333
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. +.. ..+ |+|+|++|++++.++ +.+||+.+++........ ....+.|+|+|++|++++.++.+.+|.+.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 345 899999999887765 566999888765332222 24567899999999999988888888753
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.6e-13 Score=100.82 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------CeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
|.||.++++|++|+.|..+++|.+.. .+++.... .|.+.|.|++|....++|++|..+++|...|+.+ .+.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceee
Confidence 46899999999999999999999853 45555444 4568999999999999999999999999999985 3444
Q ss_pred eeeec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eee-eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEE
Q 028806 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~ 148 (203)
..+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+... .+. .+.+......+.+.|+|.. .+|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44432 023578888 89999999999999999999998654 221 1222223368899999965 5777888888999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99987653
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.54 E-value=1.7e-12 Score=100.22 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.2
Q ss_pred cccCC-EEEEEcC-CCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc
Q 028806 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 4 sp~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++.. ...+..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999998 7777888899999999999999998888885 99999999974 466777787
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ |+|++. .+++++.++.|++||...+..+. .+..|.. .. ...|+|++.++++++.|+.+++|+++...
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 899988 55555899999999988777777 6777754 33 33899999888899999999999998766
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 5
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=111.17 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=115.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|-|||..|+.+.. ..+.+||...|..++++++|...|.+++|+.+|+.+++|+.|..|.+|.-...+. + -.. |
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L--kYS-H 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L--KYS-H 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e--eec-c
Confidence 578999998777654 5799999999999999999999999999999999999999999999998653321 1 133 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...|.|+ |+|-...+++++-. ..-+|..... .+...+.. ..|.+.+|..||++++.|-.+|+|.+-+-
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 8999999 99999888887764 3557876542 23223222 36889999999999999999999998754
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.6e-13 Score=105.25 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=105.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCC---------------------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQS--------------------- 58 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d--------------------- 58 (203)
...|.|..|++|+.||+|+||.+.++.++.++.- .+.|.+++|+|.+. .|+++...
T Consensus 407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred EecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 4578899999999999999999999998877653 34577777777543 22222111
Q ss_pred ------------------------------------------------------------CeEEEEEcCCccccceeeec
Q 028806 59 ------------------------------------------------------------GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 59 ------------------------------------------------------------~~i~~wd~~~~~~~~~~~~~ 78 (203)
..|.|+++.. ......|..
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~PF~k 564 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQSPFRK 564 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccCchhh
Confidence 1222222221 111112222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.+.++ |+|.-.+|++++.. .|++||+..+..++.+..... .|..|+.+|.|..|+.++.|+.+..||+.-.
T Consensus 565 -skG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 565 -SKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred -cCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 34456667 99999898888764 699999988777777765544 7999999999999999999999999998655
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=1.2e-13 Score=105.96 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=107.8
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEee----cCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---------
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
|.+--|+.|-.-|.|.+.+....+....+ ......++++.|-|.+ ..++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34555666766788888876542211111 1124679999999954 566677789999999774210
Q ss_pred ------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE
Q 028806 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~ 131 (203)
.++..+.- ....+... |+|||++|++.+.||.++|+|..+.+.+..++..-+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 01111111 23456666 899999999999999999999998887777665544 6899999
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|||+||++|+.|..|.||.+....
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987654
No 190
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-13 Score=104.19 Aligned_cols=131 Identities=10% Similarity=0.158 Sum_probs=106.9
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|.|||..++ |.+++.+|.|.+||+....++. -.+.|..+...|+|+|.. .+|++.+.|..|++||.+. ......+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~ 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccceee
Confidence 357777664 5678899999999998765543 345789999999999955 5678899999999999973 45555555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
...+...+ |.++|.+|+.|+..|.|..||++. ..++..+..|.. .|++++|-|..
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 46788889 999999999999999999999986 457888888855 79999998875
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=2.6e-12 Score=97.93 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=103.7
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcC-CCeE--EEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc---
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~--- 72 (203)
|+++|++++|+++ ..++.|.+|++. ++.. +.... .......++++|++++|++++. ++.|.+|++...+..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4689999988665 457889999986 3432 22222 2335678999999999888764 789999999643322
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceee-----eeccCCCCceEEEEEeCCCCeEEEEeC-C
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~-d 144 (203)
+..+.. ......+ ++|+++++++++. ++.|.+||+.+...+. ......+.....+.|+|++++|+++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 222222 2234455 8999999876664 6899999997633221 111111224678999999999988875 8
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
No 192
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=2.9e-13 Score=101.80 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=115.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCcc--c--ccee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK--D--CSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~--~--~~~~ 75 (203)
.|+.+...++.+..=|...+||++++.. ...+.-|...|.+++++|- ..+|++++.|++++|||++... . .+..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4666667777777667999999997543 5666778889999999995 4678999999999999997522 1 1222
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc----CCceeeeeccCCC--C--ceEEEEEeCCCCeEEEEeCCCc
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHSE--Y--PIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~--~--~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.. |...|.+. |+|.+..|++-+.|..|+|||.. .-.+..++..... . ......|.|+..++++|-.-..
T Consensus 366 -~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 366 -LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred -cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence 33 78889999 99998889999999999999973 2233333321111 1 2345789999999999999999
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|-|+|-..++
T Consensus 444 IDv~~~~~~q 453 (498)
T KOG4328|consen 444 IDVFDGNGGQ 453 (498)
T ss_pred eeEEcCCCCE
Confidence 9999987776
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.4e-12 Score=89.40 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=110.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
..|..+-|+.++.|+.++-||+++|+..+++++|...|.++.--.....+++|+.||++++||+++ ++++..+.. ...
T Consensus 122 ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk~ 199 (325)
T KOG0649|consen 122 LDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YKN 199 (325)
T ss_pred eccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-ccC
Confidence 457777788888999999999999999999999999999999856667899999999999999986 455555543 221
Q ss_pred ----------ceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 83 ----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 83 ----------~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.++ .-+..++++|+. -.+.+|.+++.++..++.-. . ++..+.|.. ..+++++..+.+.-|.+
T Consensus 200 ~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred hhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccccceeeeee
Confidence 12222 345556666554 46899999998888777654 2 577778854 46777777888888887
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
..-.
T Consensus 274 ~Gvl 277 (325)
T KOG0649|consen 274 NGVL 277 (325)
T ss_pred ccEE
Confidence 6544
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.8e-12 Score=102.33 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=103.6
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCe--EEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~ 75 (203)
+|||||+.|+..+. +..|++|++.++... .+..+.+.+...+|+|+|+.|+ +.+.++. |++||+.. .....
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEE
Confidence 69999999888753 468999999887653 3444556677899999998775 4455554 77777753 33445
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. +....... |+|+|+.|+..+. +| .|+++|+..+.... +..+.. .+....|+|+|++|+....+ ..|.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC-cccCeEECCCCCEEEEEEcCCCceEEE
Confidence 555 55555556 9999999887764 33 58888877665543 332322 46678899999999877643 3688
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|++.+..
T Consensus 362 ~~d~~~~~ 369 (435)
T PRK05137 362 VMKPDGSG 369 (435)
T ss_pred EEECCCCc
Confidence 88875543
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9.4e-14 Score=106.89 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=103.9
Q ss_pred EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-eeccCCCceeEE-Eee--CCCEEEEEcCCCcEE
Q 028806 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDAL-LKL--DEDRVITGSENGLIS 105 (203)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~ 105 (203)
.+.+++|.+.|.++.|+.+|.+|++|+.|-.+.|||... .+.+.. -++ |...|.++ |-| ....+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEE
Confidence 357789999999999999999999999999999999974 444444 466 89999999 866 567888999999999
Q ss_pred EEEccC----------CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCccc
Q 028806 106 LVGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 106 ~~d~~~----------~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
++|+.. ...+..+..|.. .|..++-.|++ ..+.+++.||+|+-+|++....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 999974 234555677866 78899999998 6788999999999999987543
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.9e-12 Score=98.60 Aligned_cols=149 Identities=11% Similarity=0.188 Sum_probs=101.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEE-------eecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCc-c
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQT-------RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYF-K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~-~ 70 (203)
++++|++++++++ ..++.|.+|++.+...+. .+. .......++|+|+++++++++. ++.|.+|++... +
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 3689999988554 567999999997632221 111 2344678999999999988876 899999999632 1
Q ss_pred --ccceeeeccCC------CceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce----eeeeccCCCCceEEEEEeCCCC
Q 028806 71 --DCSDRFVGLSP------NSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI----IQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 71 --~~~~~~~~~~~------~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
..+..+.. .. .....+ ++|++++++++.. ++.|.+|++..... +...... . ....+.++|+|+
T Consensus 210 ~~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~-~p~~~~~~~dg~ 286 (330)
T PRK11028 210 EIECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T-QPRGFNIDHSGK 286 (330)
T ss_pred CEEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c-cCCceEECCCCC
Confidence 11222221 11 112245 8999999999865 68899999865332 2222222 1 346789999999
Q ss_pred eEEEEeC-CCcEEEEeCC
Q 028806 137 FLGSISH-DSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~-d~~i~iwd~~ 153 (203)
+|+++.. ++.|.+|++.
T Consensus 287 ~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 287 YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEccCCcEEEEEEc
Confidence 9998774 8899999874
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=4.6e-13 Score=96.81 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=121.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---- 73 (203)
|.|+|..+.|++++.|..-+||.... + ++...+..+...++++.|+|.++.|++|+....|.||-+... ...
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 57999999999999999999999843 3 344555667888999999999999999999999999987532 222
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----C-------------CceeeeeccCCCCceEEEEEeCC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-----~-------------~~~~~~~~~~~~~~i~~i~~~~~ 134 (203)
++-+. ....|.++ |+|++-++++|+.|+..+|+..- + |+.+.++... .+.+..+.|+|+
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 12233 56678999 99999999999999999998642 1 2233333222 347999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCccc
Q 028806 135 RKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..|+-.+.|+.+.+-|.....+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred CCEeeEecCCCceEEeecCCCch
Confidence 99999999999999999877753
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.9e-12 Score=100.83 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=100.0
Q ss_pred cccccCCEEEEE-cCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||||+.|+.. ..+| .|++||+.++.... +..+...+....|+|+++.|+..+. .+...+|.+...+.....+.
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 699999988765 3344 58999998876543 4444556788999999998876665 34445554322222334444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc---EEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~iw 150 (203)
. ........ |+|+|++|+..+.+ ..|.+||+.++.... +... . ......|+|||++|+.++.++. +.++
T Consensus 328 ~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 328 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred c-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 33344455 89999999876543 358889998876543 3322 1 2456789999999998887654 6777
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
++....
T Consensus 404 ~~~G~~ 409 (429)
T PRK03629 404 STDGRF 409 (429)
T ss_pred ECCCCC
Confidence 775443
No 199
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.49 E-value=2.3e-13 Score=106.94 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=102.5
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~ 105 (203)
.+.+|...|.+++.+|+++++++++.. ..|++|...+. .....+.. |.-.|+.+ |+|+|++|++++.|+++.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceEE
Confidence 556799999999999999999998764 46999998754 45567888 99999999 999999999999999999
Q ss_pred EEEccCCc----eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 106 LVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 106 ~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|...... .....+.|+. -|++..|+|++.+++|++.|..+++|.....
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99875432 1233667855 7999999999999999999999999988766
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.4e-11 Score=90.67 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=110.7
Q ss_pred ccccc--CCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceee
Q 028806 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~--~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~ 76 (203)
++||+ +.+||.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|++++..|+ |+||.+.. +..+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 44444 44777643 3689999999999999999999999999999999999999999886 78999974 5666666
Q ss_pred eccCC--CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--------------------ee-----------------
Q 028806 77 VGLSP--NSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--------------------IQ----------------- 116 (203)
Q Consensus 77 ~~~~~--~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--------------------~~----------------- 116 (203)
.. .. ..|.++ |+|++.+|.+.+..++|+++-+..... +.
T Consensus 213 RR-G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA 291 (391)
T KOG2110|consen 213 RR-GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA 291 (391)
T ss_pred eC-CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence 54 32 357778 999999999999999999998753110 00
Q ss_pred eeccCCCCce-EEEEEe--CCCCeEEEEeCCCcEEEEeCCCc
Q 028806 117 PIAEHSEYPI-ESLALS--HDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i-~~i~~~--~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.. .... ..+.+. +...++..++.||.++.|.+.-.
T Consensus 292 t~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 292 TAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00000 0111 223344 46688889999999999988654
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6.3e-12 Score=98.89 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred CcccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~wd~~~~~~~~~ 74 (203)
.+|||||+.|+..+ .+..|++|++.+++... +......+..++|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 36999999988754 34579999998875432 22223345568999999988764 3344 588889864 33 33
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. ....+... |+|+|+.|+..+.. +. |+++++.++... .+..... ......|+|+|++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4444 44455566 99999998877653 44 555566665543 3333322 45678999999998876643 358
Q ss_pred EEEeCCCccc
Q 028806 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
.+||+.++..
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8999887653
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.5e-12 Score=98.70 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~ 74 (203)
.+|+|+|+.|++.+. ...|++|++.+++... +....+....++|+|+|+.|+ +.+.++ .|++||+.. +. ..
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 369999999988764 3469999998876533 333344456789999998775 444444 689999864 33 34
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CCc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +....... |+|+|+.|+..+. .+. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4554 44444556 9999999887764 444 6666776665433 222212 345689999999998765433 59
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+||+.++...
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999776544
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=2.1e-13 Score=102.95 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=121.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|-|-.-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-+..+-+|..+|+|.+|.-. ...++..+.+ |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-c
Confidence 4577888889999999999999999999998888878888899999988888899999999999986 4677777777 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.++|.++ +.++|.|+++.+.|+.++|||++....+.++... - +...+++|..| +++++....+.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 8999999999999999999999987766666552 2 56778887665 34445566889994
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.1e-13 Score=103.31 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=105.1
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-------ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCc
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (203)
++..|...|+.++|+|....|++++.++.+.+|.+.. .-.++.+|.+ |.++|.|+ ..+++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 5556788899999999999999999999999999932 1135667888 99999999 7899999999999999
Q ss_pred EEEEEccCC----------ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 104 i~~~d~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|++... .....+.+|++ .|+.+++++....|++++.||+++.|+.....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999965421 23456788977 899999999999999999999999999877666
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=2.9e-12 Score=90.11 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.1
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+|+.+|+. ..++.|.+|++. ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+.. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999986554 456799999997 55555553 456788999999999998874 46799999973 344444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeee
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~ 118 (203)
+. +. .+..+ |+|+|++++++.. |..++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 23 35666 9999999998874 5678899874 6655443
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.46 E-value=1.4e-12 Score=96.92 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=99.1
Q ss_pred ccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc--------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 37 EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK--------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 37 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
..++.++.|.++.. .+++|+.|..|++|-+.... ..+..+.. |...++++ |+|+|.++++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 46799999998776 99999999999999885321 11234455 88999999 9999999999999999999
Q ss_pred EEcc--------C--------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 107 VGIL--------P--------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 107 ~d~~--------~--------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|-.. + ......+.+|.. .|+.++|+|+++++++++.|..+++||+..++...
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEe
Confidence 9765 2 123455677755 79999999999999999999999999999987553
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.3e-12 Score=104.98 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEe-eCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~ 77 (203)
.|..+..+|++++.-..|+|||.........+.. ....|+++.-+ +.|+.++.|-.||.|++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666666777777779999999998877776653 34456666543 3578999999999999999986432 344455
Q ss_pred ccCCCc--eeEE-EeeCCCE-EEEEcCCCcEEEEEccCCc--eeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 78 GLSPNS--VDAL-LKLDEDR-VITGSENGLISLVGILPNR--IIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~~-l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
. |... |..+ +.+.|-. |++|+.+|.|++||++... ....+..|. ++..+++..++....+|+|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 5 6555 7777 7665544 9999999999999998732 223333433 224899999999999999998 99999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|++...+..
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999765543
No 208
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=1e-11 Score=97.51 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=102.9
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~ 75 (203)
+|+|+|++|+.+... ..|++|++.+++... +..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 699999999887643 479999998875533 3334455677899999987764 44444 588888764 23334
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~ 148 (203)
+.. +....... |+|+|+.|+..+. .+ .|+++++.+++... +..+.. .+..+.|+|++++|+.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 444 44444455 8999998887654 33 57788887766443 333323 567889999999999888665 799
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99987754
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.2e-12 Score=100.27 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=117.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC---ccccce
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~ 74 (203)
.+++.|.+.+.. .+..+.+|......... .-..|...+++.+++|.+++++++..||.|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 345555554444 34568888887643111 1124666789999999999999999999999996432 123455
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. |...|.++ |+++|.+|++|+..|.+.+|.+.+++ .+-++.- +++|..+.++||+.+.+....|+.|.+....
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 6677 88999999 99999999999999999999999988 3334443 4489999999999999999999999999887
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 323 dl~~k 327 (792)
T KOG1963|consen 323 DLEIK 327 (792)
T ss_pred chhhh
Confidence 76554
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=100.14 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=116.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
..++.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +-...++.. ...+|+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEEE
Confidence 4678888999999887 4456667788999999999999999999999999999999853 444444554 67889999
Q ss_pred -EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 88 -LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 88 -~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.|+.+.++.+..+ .+.+=.+.....+..++.|.+ -|.++.|++....+++|+.|-..+|||.-...
T Consensus 152 ~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred EECCCCCceEEecCC-eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcc
Confidence 99988877766544 466666666666777899954 89999999999999999999999999975543
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.4e-11 Score=97.10 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=99.0
Q ss_pred CcccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCe--EEEEEcCCccccce
Q 028806 1 MTFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~ 74 (203)
++|+|+|+.|+. .+.++ .|++|++.++... .+..+......++|+|+++.|+.++. .+. |+++++.. ....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 369999997754 44444 6999999887653 45555555677899999998887653 444 55666543 2233
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. .......+ |+|+|++|+..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+.+ +.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333445 899999998765432 5899999887765 33322 2 34567999999988876642 458
Q ss_pred EEEeCCCc
Q 028806 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
.++++.+.
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888554
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.42 E-value=4.5e-12 Score=100.79 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=112.2
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeE--EE----eecCCccceEEEEEeeCC--CEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTV--QT----RSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.|+|. ..+|+.|..+|.|.+||++.+.. .. ..-.|..+++.+.|..+. .-|++++.||.|..|+++....+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 56774 45778889999999999987543 22 223578899999998644 44899999999999988632100
Q ss_pred --------------------------------------------------------------ceeeeccCCCceeEE-Ee
Q 028806 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (203)
...+.. |.++|+++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 001112 45667777 77
Q ss_pred eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccCCC
Q 028806 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
|=+..++..+.|..+++|... ...++..+..+.. .+++++|||... .++++..+|.|.+||+........
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 766555555558999999977 5667777777755 699999999764 566777899999999976655443
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=91.19 Aligned_cols=152 Identities=10% Similarity=0.066 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|+|++||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+.+..|+..++|..........-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 579999999988875 678999999998765544344567899999999999999999999999965432222222232
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Cc-----------ee---eee------ccC--CCCceEEEEEeCCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR-----------II---QPI------AEH--SEYPIESLALSHDR 135 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~-----------~~---~~~------~~~--~~~~i~~i~~~~~~ 135 (203)
.+.|... |+|+|.+|+.++.... ++|.+.. ++ .+ ..+ .+. -...+.+++|.|.|
T Consensus 280 -sgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 3455555 9999998887665432 3454421 00 00 000 110 01368899999999
Q ss_pred CeEEEEeCCC--------cEEEEeCCCc
Q 028806 136 KFLGSISHDS--------MLKLWDLDDI 155 (203)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~ 155 (203)
.+|++.-..+ .|.+||.+..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 9999876433 3667776544
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=1.5e-13 Score=110.20 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=105.0
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~ 110 (203)
.+.+|...|+|+.|...|.++++|+.|..++||.+.+ ..++....+ |.+.++.+ .+.....+++++.|..|++|-+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecC
Confidence 3457888999999999999999999999999999875 688899999 99999999 67788889999999999999999
Q ss_pred CCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++..+.+|++ +|++++|+|-. +.+.||++++||.+
T Consensus 263 ~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999977 89999999975 66789999999998
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=6.5e-12 Score=103.35 Aligned_cols=148 Identities=19% Similarity=0.239 Sum_probs=112.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccc--eEEEEEeeCCC-EEEEecCCCeEEEEEcCCc-cccceeeec
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~-~~~~~~~~~ 78 (203)
.|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.. ....-.+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 4789999999999999998753 245566677766 99999998774 4999999999999999863 111112222
Q ss_pred cCC--C-ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------CCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 79 LSP--N-SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 79 ~~~--~-~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+. + .++++ .++....+++|+. +.|+||++. |+.+..++.+. ...+.|++|+|-.-.||+|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 3 48888 7899999999998 899999975 44444443322 23689999999999999999999999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
||......
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99876543
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=96.51 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=115.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCccceEEEEEeeCC-----CEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.+|..||++++.|..+|+|.+-+... +....++ +..++|++++|+|.. ..+++.....++.+|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 36899999999999999999987543 3322333 467899999999854 467788888888888875 444
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. -.-...|+ +.++|.+++.|+.++.+++|- +.|-.+.++-.. +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 443333 33345667 899999999999999999996 557677666554 45899999999999999999999999998
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 643
No 217
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.9e-11 Score=94.28 Aligned_cols=153 Identities=16% Similarity=0.051 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcC-CC----eEEEEEcCC---CeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEE--cCCcc
Q 028806 2 TFAADAMKLLGTSG-DG----TLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS--WGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~----~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd--~~~~~ 70 (203)
+|||||+.|+..+. .| .+.+|++.. +................+|+|||+.|+..+ .++...+|. +...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998877543 22 334467654 233223322223446789999999877655 456555554 43222
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC---
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--- 143 (203)
.....+.. ....+... |+|+|+.|+..... ..|.+||+.+++........ . .+....|+|||++|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~-~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP-E-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC-C-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44455566 99999999876543 46999999888765433222 2 4678999999998875442
Q ss_pred CCcEEEEeCCCccc
Q 028806 144 DSMLKLWDLDDILK 157 (203)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (203)
...|+++++.++..
T Consensus 394 ~~~L~~vdl~~g~~ 407 (428)
T PRK01029 394 ESELYLISLITKKT 407 (428)
T ss_pred CceEEEEECCCCCE
Confidence 35688899876654
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=9e-12 Score=91.70 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=109.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---c----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK---D---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~---~---- 71 (203)
++|++.-..++++..|-.|++|+-.. .....++. ....|.+++|-|.+ ..|++++. +-|.+|...... .
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccccccc
Confidence 46787666778889999999999765 33334432 34579999999965 55666665 459999875211 1
Q ss_pred ----cceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 72 ----CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ----~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..+.+......+|+++ |.++|..+++++. +..|.|||..++..+.......+ .+.-+.|+||+.+|+.+..|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 1112221123678999 9999999999886 67899999999877665533323 688899999999999999999
Q ss_pred cEEEEeCC
Q 028806 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=1.1e-10 Score=89.86 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=103.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|+|||+++++++.||.|.++|+.+.+.+.++... ....+++++++|+++++++ ..+.+.++|..+ .+.++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 58999999999999999999999999999888764 4468899999999998876 589999999875 355555543 2
Q ss_pred -------CCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCcee--eeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEE
Q 028806 81 -------PNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 81 -------~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~ 148 (203)
...+..+ .+|....++.. -..+.|.+.|......+ ..+... . ......|+|+++|++++. .+..|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345667 57777755544 44588888887665433 233332 2 578899999999877654 667888
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|..+...
T Consensus 198 viD~~~~k~ 206 (369)
T PF02239_consen 198 VIDTKTGKL 206 (369)
T ss_dssp EEETTTTEE
T ss_pred EEeeccceE
Confidence 998877643
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2e-11 Score=96.04 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=95.6
Q ss_pred CcccccCCEEEE-EcCCCeEEEEE--cCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLG-TSGDGTLSVCN--LRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~~i~vw~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~ 76 (203)
.+|||||+.|+. .+.++...||. +.++. ...+..+........|+|||+.|+..+. .+...+|.+...+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998864 56677655555 44444 3455555555677899999998876554 4666677654322233333
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. ........ |+|+|++|+..+.++ .|.+||+.+++... +... . ....+.|+|+|++|+.++.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223345 899999999877654 59999998877553 3322 2 346789999999988777443 3555
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5553
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.5e-12 Score=93.40 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=109.7
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|-|. ...+|+++.-+.+++||.+.+ +++..+...+.+++++...|++++++++...+.+..||++........+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999864 567788877889999999999999999999999999999864444445777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
-.+.++++ .+|.++++++++-|+.|+|+|+.+.+.+....... .++++.+.++-+
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~n 344 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDVN 344 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCcc
Confidence 88899999 89999999999999999999999977776655442 577888766543
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=5.5e-11 Score=93.92 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=100.3
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+. .+.++ .|++|++.++.. ..+..+........|+|+++.|+..+. ++ .|+++|+.. ...+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998754 44444 478889887765 445555666778899999998887653 33 677778653 33444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC------C
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~ 145 (203)
+.. ....+... |+|+|+.|+....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 543 44445556 99999999887643 3588888765443 334322 2 46778999999998765532 3
Q ss_pred cEEEEeCCCccc
Q 028806 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|+++++.+...
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 578888865443
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.37 E-value=4.1e-11 Score=99.94 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=111.1
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-----C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-c----
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRK-----N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~-----~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~---- 71 (203)
++.+.++++|+.||+|++|+.+. + +...+......++..+...+.+..+++++.||.|++.++.... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 34558999999999999999864 1 1222333346788999999999999999999999999987421 1
Q ss_pred -cceeeeccCCCceeEE--E-eeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCC
Q 028806 72 -CSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
+......-..+.+..+ | ...+ ..++.+...+.|..||++......+++... .+.|++++.+|.+++++.|+..|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 1111111023344444 3 2233 378888888999999998766554443221 12799999999999999999999
Q ss_pred cEEEEeCCCcccCCC
Q 028806 146 MLKLWDLDDILKGSG 160 (203)
Q Consensus 146 ~i~iwd~~~~~~~~~ 160 (203)
.+.+||++=..+...
T Consensus 1218 ~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILS 1232 (1431)
T ss_pred eEEEEEeecCceeec
Confidence 999999986655543
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.7e-11 Score=97.61 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=120.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC--C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK--N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++||+++++|++..||.|.+|.--. + .....+..|...|.+++|+++|.+|++|+..+.+-+|.+.+.+ +.|-
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfL 288 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFL 288 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---cccc
Confidence 6899999999999999999997543 1 2234566788999999999999999999999999999998644 3333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC----------CCceEEEEEeCCCCeEEEEeCCCc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+-..++..+ ++|++.+.+....|+.|.+....+.....++.+-. ..-.+.++++|.-+.++..+..++
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3256788888 89999999999999999998875544333332221 112466889997778888899999
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|.+||+-+....
T Consensus 369 vQ~ydl~td~~i 380 (792)
T KOG1963|consen 369 VQFYDLYTDSTI 380 (792)
T ss_pred EEEEecccccee
Confidence 999999776554
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=8.4e-11 Score=92.77 Aligned_cols=150 Identities=17% Similarity=0.073 Sum_probs=100.1
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|+. .+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 699999999876543 469999998876533 3333344557899999998774 44444 688888864 23344
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC-C--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++++.+++........ . ......|+|+|++|+..... + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-N-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-C-CccceEECCCCCEEEEEEccCCceEEE
Confidence 544 44444555 8999998877654 33 5777787777654332221 2 23457899999999877643 3 588
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
+||+.++..
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 899887654
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=8.4e-13 Score=106.07 Aligned_cols=151 Identities=12% Similarity=0.190 Sum_probs=119.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|...|.+|++|+.|..++||...+..++..+.+|.+.|+.++.+.+...+++++.|..|++|.+.. +.++..+.+ |.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 3667789999999999999999999999999999999999999998888899999999999999984 678888899 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEcc--------------------------------------------------
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL-------------------------------------------------- 110 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-------------------------------------------------- 110 (203)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999 87743 34445555555543
Q ss_pred ---------------------------------CCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028806 111 ---------------------------------PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 111 ---------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|.....+.+|.+ .++.+.++|-. +...+++.||...|||+-.+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 3333333334444 67788888854 455688899999999998776
Q ss_pred cCC
Q 028806 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
+..
T Consensus 430 pik 432 (1113)
T KOG0644|consen 430 PIK 432 (1113)
T ss_pred cce
Confidence 653
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=7.6e-12 Score=93.33 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=93.3
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028806 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 119 (203)
..++|+++|..|++++.||.+|+|++... ..+..... |...|.++ |+|+|++|++.+.+ ..+||+.+++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 57899999999999999999999998643 34444555 78899999 99999999999999 89999998772111111
Q ss_pred ----------------------------c-------------CC------------CCceEEEEEeCCCCeEEEEeCCCc
Q 028806 120 ----------------------------E-------------HS------------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 120 ----------------------------~-------------~~------------~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
. +. ...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 0 00 016899999999999999999999
Q ss_pred EEEEeCCCcccCCC
Q 028806 147 LKLWDLDDILKGSG 160 (203)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (203)
|.|++..+++.-+-
T Consensus 305 Vai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQY 318 (398)
T ss_pred EEEEEeceeeeeEe
Confidence 99999988875543
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.2e-11 Score=94.46 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=113.4
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----cCC---
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LSP--- 81 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~~--- 81 (203)
|+.++....|+-+++..|+.+..+....+.++++..++-..+|++|+.+|.|.+||.+.. ..+..+.. .+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh-hhheeeecccccCCCcccc
Confidence 333334467899999999998888877789999999999999999999999999999753 33333321 022
Q ss_pred --CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCCCcc
Q 028806 82 --NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..|+++ |+.+|-.+++|+..|.|.|||+++.+++..-......+|..+.|.+.+ ..|++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 248889 888899999999999999999999888765443334589999998863 444443 45689999988877
Q ss_pred cCCC
Q 028806 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
+...
T Consensus 306 ~~as 309 (703)
T KOG2321|consen 306 PMAS 309 (703)
T ss_pred ceee
Confidence 6543
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.3e-10 Score=91.97 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=96.5
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCe--EEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~~wd~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++|++.+++... +..........+|+|+|+.|+. .+.++. |+++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999998876532 368899998876432 2222333457899999998765 455564 77777753 33444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++|+.+++..... .... .....+|+|+|++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 544 44444555 9999998877654 33 4666777777654322 1212 2345789999999887664 33 466
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 678777654
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-10 Score=89.71 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE--ecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCC
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
.+++++++........+. ..++|+++.|+|+++.+++ |-.-..+.+||++ +.++..+ ..++-.++ |+|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCCC
Confidence 468888887545544444 3789999999999977654 4456789999986 4555444 34566667 899999
Q ss_pred EEEEEcC---CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCc
Q 028806 94 RVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDI 155 (203)
Q Consensus 94 ~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~ 155 (203)
+|+.++- .|.|-|||+.+.+++..+... ..+-+.|+|||++++|++. |+.++||+....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9998764 588999999998888888776 2456799999999998874 688999997654
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=5.7e-11 Score=92.19 Aligned_cols=154 Identities=12% Similarity=0.195 Sum_probs=118.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec------CCcc-----ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
..++-..+|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.+|-.+++|...|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777899999999999999998765544443 2333 39999999999999999999999999999765
Q ss_pred ccceeeeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
..+..-.. ..-++..+ |.+. ++.++ ......++|||-.+|++...+... . .+..+++-|++-.++++-.+..+
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEE-ecchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCcc
Confidence 54444344 45677777 7443 33444 445568999999999998887654 3 58999999999999999999999
Q ss_pred EEEeCCCcccCC
Q 028806 148 KLWDLDDILKGS 159 (203)
Q Consensus 148 ~iwd~~~~~~~~ 159 (203)
..|-+...-+..
T Consensus 338 ~~yyiP~LGPaP 349 (703)
T KOG2321|consen 338 HTYYIPSLGPAP 349 (703)
T ss_pred eeEEccccCCCc
Confidence 888887765543
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=2.1e-10 Score=83.83 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=99.9
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|..+.-+++ ....++.|.+|++...+-...+.....++.++.|+|+|+. |.++..+-.|.+|.+.+.. ...+..
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~- 131 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPH- 131 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecc-
Confidence 3555555443 4466889999999998888888888899999999999955 5566679999999997532 222222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC------------------------------------CcEEEEEccCCceeeeeccCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSEN------------------------------------GLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~~ 122 (203)
....+..+ |+|+|++.+.++.. ..+.+||---.-.+..+ +.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ER 209 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--ee
Confidence 33445555 78888877655431 12334431111111122 22
Q ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 123 ~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+-.+..++|+|.+++|++|+.|+.+++.+--+
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceee
Confidence 22588999999999999999999998876433
No 233
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=7.1e-11 Score=88.05 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=103.0
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~ 105 (203)
.+.+|.+.|..|.|+.++++|++|+.|..+++|.+.. ..+++.....-|...|.|+ |....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4457889999999999999999999999999999852 1123332222156789999 988899999999999999
Q ss_pred EEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.|+++.+.+..+.... .+.|+.+..+|..+.|++.+.++.|.+||.+..+.
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 99999988877664332 23799999999999999999999999999987763
No 234
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.27 E-value=1.1e-10 Score=83.72 Aligned_cols=145 Identities=11% Similarity=0.100 Sum_probs=106.6
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeC-CCEEEEecCC-CeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQS-GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d-~~i~~wd~~~~~~~~~ 74 (203)
++|...+ +.+|+.+.||.+|+||++....-..+ .....+...++|+++ -+++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 4677655 46789999999999999875432222 223567888999984 4677776554 5799999998888899
Q ss_pred eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCC
Q 028806 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDS 145 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~ 145 (203)
.+.. |.+.|..+ |.| ....|++++.|..+.+||+.+. .++..+.. +..|..+.|++. ..+++.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 877 5678999999999999999742 13333333 337999999974 46776665 44
Q ss_pred cEEE
Q 028806 146 MLKL 149 (203)
Q Consensus 146 ~i~i 149 (203)
++.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 4444
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=7.5e-10 Score=80.37 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=80.5
Q ss_pred cCCCeEEEEEcCCCeE--EEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceeeec-cCCCceeEE-E
Q 028806 14 SGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFVG-LSPNSVDAL-L 88 (203)
Q Consensus 14 ~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~-~~~~~v~~~-~ 88 (203)
-.-|.|+|-++...+. ...+..|.+.|.|++.+.+|..++|++..|+ |++||..+ +..+..+.. .....++++ |
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEe
Confidence 3458899999876544 4678899999999999999999999999886 78999985 556665543 134568999 9
Q ss_pred eeCCCEEEEEcCCCcEEEEEccC
Q 028806 89 KLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+|+..+|++++..|+|+++.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999875
No 236
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.26 E-value=1.3e-10 Score=92.62 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=112.9
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCC--------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|.|. -..++.|+..|.|..-+-... +.......|.++|+.+.++|-+..++.++.|.++++|.......+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 45443 356888999999887443321 112344567899999999998776665555999999998633455
Q ss_pred ceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCC--ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+..+.. +...++++ |+|.. ..++++..+|.|.+||+... .++.+...... ....+.|+++|+.|+.|...|.+.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 555665 67778999 99965 56777788999999999753 34444444423 677888999999999999999999
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+|++....-.
T Consensus 512 ~~~l~~~l~~ 521 (555)
T KOG1587|consen 512 ILKLSESLAV 521 (555)
T ss_pred EEEcCchhhc
Confidence 9999754433
No 237
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=8.4e-10 Score=86.82 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=92.3
Q ss_pred cccccCCE--EE-EEcCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC----eEEEEEcCCc-c
Q 028806 2 TFAADAMK--LL-GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (203)
Q Consensus 2 ~~sp~~~~--l~-~~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~wd~~~~-~ 70 (203)
+|||||+. ++ +...+ ..|++.++.+++... +....+.....+|+|||+.|+..+. .| .+..|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 59999975 32 33333 468888888775432 2223444556899999988876543 22 2334665431 1
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEE--EccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC-
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLV--GILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~--d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d- 144 (203)
.....+........... |+|+|+.|+..+ .+|...+| ++.. +.....+..+.. .+....|+|||++|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233455 999999888765 45654455 4432 223333443323 56788999999998876643
Q ss_pred --CcEEEEeCCCcccC
Q 028806 145 --SMLKLWDLDDILKG 158 (203)
Q Consensus 145 --~~i~iwd~~~~~~~ 158 (203)
..|.+||+.++...
T Consensus 349 g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 349 GVRQICVYDLATGRDY 364 (428)
T ss_pred CCcEEEEEECCCCCeE
Confidence 46999999877654
No 238
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=3.3e-10 Score=84.36 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=107.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE----EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~ 76 (203)
..+|.+++||.+..+....++++..... +... .-...-+.+.|..+...+..+..-|.++-+|+-... .....+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 4678899999998888877888765332 2111 122334455555555555555444444444442211 344556
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+ |...+..+ ++||+++|+++..|..|++-.....-.+..+ -+|+. -|..++.-++ ..|++++.|++|++||+.+
T Consensus 148 lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 148 LG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 67 88899999 9999999999999999998766544444444 45766 5888888776 4589999999999999999
Q ss_pred cccCCCCC
Q 028806 155 ILKGSGNN 162 (203)
Q Consensus 155 ~~~~~~~~ 162 (203)
+.+-+.+.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 98765543
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.3e-10 Score=83.47 Aligned_cols=152 Identities=12% Similarity=0.041 Sum_probs=111.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccccee-e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~ 76 (203)
+.|++.+..++++..+|.+.+-+.....+ ++..+.|...++-..|+. +.+.+++|+.|+.+..||++.++..+.. .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 35788888899988889998666555433 347788999999999886 4478899999999999999854444332 4
Q ss_pred eccCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
+. |...|.++ .+ |.+.+|++|+.|-.|++||.+ -++++..-... + .|+.+.++|.-. .|+.++.-+-.+|-+.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 55 78888888 44 578899999999999999998 46777655444 3 799999999543 2333333334566655
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 284 ~~~ 286 (339)
T KOG0280|consen 284 SDK 286 (339)
T ss_pred ccc
Confidence 433
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.24 E-value=2.6e-09 Score=82.29 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=101.2
Q ss_pred CEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++ ++-..++.|.|.|..+.+.+..+......-..+.++||++++++++.|+.|.++|+.+ .+.+..+.. ......
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcce
Confidence 444 4556789999999999999988886555445678999999999999999999999985 467777765 344566
Q ss_pred E-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC------CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 87 L-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
+ ++++|+++++++. .+.+.++|.++.+.++.+.... ..++..+.-+|....++..- ..+.|.+.|....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 7 8999999998874 7899999999999888775431 22577888888887555554 4577877786654
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1e-09 Score=85.31 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
+.-.++-|...|.|.+|+...++....+. .|.++|.++.++.+...|.+++.|..+..|+.. .......+.. ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeecc-CCCc
Confidence 44577888889999999999998877775 688999999999999999999999999999987 4567777777 7777
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC-----CCeEEE-EeCCCcEEEEeCCCcc
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLGS-ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~-~~~d~~i~iwd~~~~~ 156 (203)
+.++ .+|++..+++++. .|++||+++.+.+..+.+|.. +|+++.|.-+ |.++++ ...+.-|.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 7999999998874 699999999999999999965 9999999876 666554 4467778999876643
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 224 kk 225 (541)
T KOG4547|consen 224 KK 225 (541)
T ss_pred cc
Confidence 33
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=5.6e-10 Score=91.75 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=114.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceE---EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT---SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~---~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
+.+.++.+..++.+-+|+...+.....+..... ... -+.++++.-++++|+.-+.|.+|+.... ..-..+.+ |.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-He 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-HE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-cC
Confidence 456778888889999999888776666554322 111 2234556668888999999999999732 22236788 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.+..+ ++-+|.++++.+.|+.+++|.+.+++... ..-+|+. .|+.++|.|+ .+++++.|.+.++|+....
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEecccc
Confidence 999999 99999999999999999999999987765 5667855 8999999999 9999999999999965433
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.2e-09 Score=83.50 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=119.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEe------e--------------CCCEEEEecCCCe
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLM------K--------------NGRKVVCGSQSGT 60 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~d~~ 60 (203)
.|-+.++|....||.+++|+...++....+.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567899999999999999999887766643 12334444443 1 1235667778899
Q ss_pred EEEEEcCCccccceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 61 i~~wd~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
|.+|++.. ++.-..+. +-|.+.|.++ ++.+-..|.+++.|+.+..|++.+...+..+.+... .+.+++.+||+..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999964 44444443 2277889988 788889999999999999999999999999988755 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCCCC
Q 028806 139 GSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
++++ +.|++||+.+.+.-..+
T Consensus 160 ~~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEe
Confidence 9886 78999999988755443
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1.8e-09 Score=77.74 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=102.1
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeeccCCC
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSPN 82 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~ 82 (203)
++-+...|.|.++..........+.+- .....++.|++.+..++++..+|.+.+-+... .-+.++.++. |.-
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~ 166 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEF 166 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cce
Confidence 444555677777765543322233221 11245778999999999999999988544321 1123346677 888
Q ss_pred ceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeee-eccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~-~~~~~~~-~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..+.. |+ .+.+.+++|+.|+.+..||++ .++.+.. .+.|+. .|.+|.-+| .+.+|++|+.|..|++||.+++.+
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 88888 74 356789999999999999999 5555544 455644 688888777 568999999999999999997643
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.9e-09 Score=85.09 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=94.7
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+. ...++ .|++||+.++... .+..+........|+|+++.++..+. ++ .|+++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6888899887653 35555555667899999998776553 33 566777653 22 333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. ........ |+|+|++|+..... + .|.+||+.+++... +... . ......|+|+|+.|+..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999877653 2 58889988876543 3221 1 22356899999998876643 3477
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=2.2e-09 Score=84.35 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=96.4
Q ss_pred CcccccCCEEEEE-cCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~ 74 (203)
++|+|+|+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|+++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3699999977653 433 35889998877543 34444444557789999998876554 33 577777753 2233
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|+|++++.++.++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 44445555 899999999887765 7889998876543 33322 2 245568999999988777543 35
Q ss_pred EEEeCCC
Q 028806 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
No 247
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=1.8e-08 Score=72.52 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=107.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CccceEEEEEeeC------CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~ 67 (203)
++||||+.+||.+...|+|+++|+....+ ..+.. ....|..+.|.+. ...|++....|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999986433 23322 1245667777642 2256666778888877763
Q ss_pred C----ccccceee--eccCCCceeEE-EeeCCCEEEEEcCC----C-------cEEEEEccCCceee-------------
Q 028806 68 Y----FKDCSDRF--VGLSPNSVDAL-LKLDEDRVITGSEN----G-------LISLVGILPNRIIQ------------- 116 (203)
Q Consensus 68 ~----~~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d----~-------~i~~~d~~~~~~~~------------- 116 (203)
. .......| ...+...|.++ ++|..++|++|+.. + -+..|-+-++.+..
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 2 11112222 22135577777 89998888876531 1 25556553221100
Q ss_pred ---------------eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCCC
Q 028806 117 ---------------PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 117 ---------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.........|..|.++|||+.||+...+|.|.+|++.+..++..+..+
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 001111236899999999999999999999999999999988777654
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.2e-09 Score=85.06 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=92.0
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|+|||+.|+. ...++ .|+++++.+++.. .+..+.......+|+|+++.|+..+. ++ .|+++++.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998865 44555 4888888877653 44445555678899999998876553 34 466666643 22 333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. ........ |+|+|++|+..+.. + .|.++|+.+++... +... . ......|+|+|+.|+..+. ++ .|+
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 22222334 89999999876653 3 46667887776543 3322 1 2234589999998876653 33 367
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776433
No 249
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=1.4e-08 Score=77.84 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=116.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-eEEEEEcCCccccceeeeccCCCce
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+|.+++..++ |...|.+...+..++. ++...|.-..+..+++-++.|..|| .+-+||... ..+..+.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6788888877 7888888766655443 4566788888888888999999999 899999874 45566666 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC----cEEEEeCCCcc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----MLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~ 156 (203)
.++ .+|+|++++++.....|.++|+.+|.....-+...+ -|..+.|+|+++++|-+--+| .|+++|+.++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999 899999999999999999999999987766555533 699999999999999776554 68999988754
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=1.9e-08 Score=77.23 Aligned_cols=151 Identities=13% Similarity=0.209 Sum_probs=97.5
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCe--EE--Eeec-CCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw~~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~ 73 (203)
+.|+|+++++++.. ....|++|++.... +. ..+. ......+.++|+|+++++++.. .++.|.+|++......+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 35899999887753 34679999987643 31 2222 3456689999999999887665 47889999987222111
Q ss_pred ---eeeecc-----CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCce--eeeeccCCCCceEEEEEeCCCCeEE
Q 028806 74 ---DRFVGL-----SPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRI--IQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 74 ---~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~--~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+.+... .......+ ++|+|++|+++.. ...|.+|++. ++.. +..+... +...+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 112110 11245566 8999999998875 5679999983 3433 3333332 22478999999999999
Q ss_pred EEe-CCCcEEEEeC
Q 028806 140 SIS-HDSMLKLWDL 152 (203)
Q Consensus 140 ~~~-~d~~i~iwd~ 152 (203)
++. .++.|.+|++
T Consensus 308 Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 308 VANQDSNTVSVFDI 321 (345)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 887 5678999976
No 251
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.11 E-value=8.7e-11 Score=83.23 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=62.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
.+-||++.+|+++.|+.||||+.++.+++..++.|...|.+++|+|+...++.++.|++|.+|++
T Consensus 258 rIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 258 RIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999986
No 252
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.8e-08 Score=79.04 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=96.3
Q ss_pred cccccCCE-EEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCC--CeEEEEEcCCccccce
Q 028806 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~~wd~~~~~~~~~ 74 (203)
.|||+|+. ++..+. ...|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|+++++.. ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 59999985 654433 3579999998886544333 4455667889999987764 3333 4677778753 2344
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC------
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------ 144 (203)
.+.. ........ |+|+|+.|+..+.. + .|.++++.+++........ . ....|+|+|++|+.....
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 4544 33322233 99999988877642 3 5788888877664433222 1 124899999998876643
Q ss_pred ---CcEEEEeCCCccc
Q 028806 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
..|.+.|+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 346 KNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcEEEEEECCCCCe
Confidence 3688888877654
No 253
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.3e-09 Score=80.11 Aligned_cols=146 Identities=14% Similarity=0.250 Sum_probs=107.3
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceeeeccCCCceeE
Q 028806 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~ 86 (203)
++.+.+-.|-+-++.++.. +.+. ..+-|.++.|...+++++.|..+|.|..+|++.. +.+.+.+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3444556677777776632 2333 4566888889888999999999999999999753 33444444 7888888
Q ss_pred E--EeeCCCEEEEEcCCCcEEEEEccCCce---eeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 87 L--LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~--~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ .--++.+|++.+.+|+|++||++.-++ +.++.+|-.. .-.-+...+....+++++.|...+||.++.+..-..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8 344788999999999999999987666 7888887432 111234566777888999999999999997765443
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=8.9e-10 Score=95.36 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=118.4
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+|...+.++|+.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|.+. ..+....+. |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 5667788999999999999998877665554 234889999999999999999999999999986 345555566 666
Q ss_pred ceeEE-EeeCCCEEEEEc---CCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..... |-. ..+++++ .++.+.+||..- +..-..-.+|.+ .++++++.|..+.|++|+.+|.|++||++..+.
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 65555 432 4555554 367899999532 221122267755 789999999999999999999999999999988
Q ss_pred CCCCCC
Q 028806 158 GSGNNI 163 (203)
Q Consensus 158 ~~~~~~ 163 (203)
++.+..
T Consensus 2371 ~h~~~~ 2376 (2439)
T KOG1064|consen 2371 RHTFQA 2376 (2439)
T ss_pred HHHhhh
Confidence 877655
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=1.2e-07 Score=72.76 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=102.4
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG----DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~ 71 (203)
|+++|++++|++... .+.|..|.+.. +.+ +............++++|++++|+++.. .|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468899999988765 57899998875 333 3333323455678999999999998875 89999999975433
Q ss_pred ccee---ee----c----c-CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc--e--eeeeccCCCCceEEEEEeC
Q 028806 72 CSDR---FV----G----L-SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 72 ~~~~---~~----~----~-~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~--~--~~~~~~~~~~~i~~i~~~~ 133 (203)
.... +. + + ...-..++ ++|+++++++... ...|.+|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 0 11224455 8999999888654 4569999987654 3 2233333344678999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCC
Q 028806 134 DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+++++++.. .++.|.++++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999887766 67889999887
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=5.8e-10 Score=96.44 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=116.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.|+.+|+....+..||.+.+|.+. +++....+.|........|-. ..+++++ .++.+.+||........-.-+
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 4688999999999999999999987 556667778888888888875 5666654 468999999864332222236
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
. |.+.++++ +-|....|++|+.+|.|.+||++..+.+..++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 6 99999999 899999999999999999999998777765543 44 56789999999999999998876
Q ss_pred cCCCCC
Q 028806 157 KGSGNN 162 (203)
Q Consensus 157 ~~~~~~ 162 (203)
..+.++
T Consensus 2402 ll~~~p 2407 (2439)
T KOG1064|consen 2402 LLHTFP 2407 (2439)
T ss_pred hhhcCc
Confidence 555443
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=5e-08 Score=84.42 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=102.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---------------CccceEEEEEeeCCCEEE-EecCCCeEEE
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---------------SEEELTSVVLMKNGRKVV-CGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~d~~i~~ 63 (203)
|+|+| ++.++++...++.|++|+..++.... +.+ .-.....|+++|++..|+ +-..++.|++
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 46778 45566666778899999988765421 111 012356799999998554 5556789999
Q ss_pred EEcCCcccccee------------eec-------cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-
Q 028806 64 YSWGYFKDCSDR------------FVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 64 wd~~~~~~~~~~------------~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
||+.+....+.. +-. ..-.....+ ++++|.++++-..++.|++||..++..........
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 998643211100 000 000123455 78999988888889999999998766543221100
Q ss_pred -----------CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 123 -----------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 123 -----------~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
-.....|+++++|+.+++-+.++.|++||+.+...
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 01467899999999888888899999999988654
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.02 E-value=2.4e-09 Score=78.41 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=96.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|||+|+++|++++- .+.|-|..+-+..+.+.. -..|..+.|..+..++++ ...++.|.+|++... +-...+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 689999999999875 777888776555443332 356778899988876665 456889999999632 22234444 4
Q ss_pred CCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..++..+ |+|+|+.|+. ..-+-.|.+|.+.+.+.... + |....+..++|+|+|++.+.++
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~-~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-P-HPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-c-ccccCceeEEECCCCceeeeee
Confidence 5667777 9999976665 45588899999988665432 2 2222578899999999987665
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=9.6e-09 Score=75.64 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=109.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-e--EEEeecCC-----ccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-T--VQTRSEFS-----EEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~--~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|.++.|+..++++ .|=.|.+|++.-. + .+..++.+ ..-|++..|+|.. +.|+.++..|+|++.|++....
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 3567777777776 4577999998632 1 22233333 2457888999954 6788888899999999984322
Q ss_pred cce---ee------------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCceeeeeccCCC-----------
Q 028806 72 CSD---RF------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~~------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~----------- 123 (203)
+.. .+ .. -...|..+ |++.|++|++-..- +|++||+ ...+++.+++.|..
T Consensus 249 Cd~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hcchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 11 11 12356677 99999999986654 6999999 45677777766531
Q ss_pred ---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 124 ---YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 ---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..-..++|+.++.++++|+....+++|++..+..+..
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCcceee
Confidence 1234678999999999999999999999877766543
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.2e-07 Score=70.32 Aligned_cols=154 Identities=13% Similarity=0.160 Sum_probs=106.2
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCC--CeEE--EeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~ 72 (203)
|+|+|++++|.++.. .|.|-.|.+.. |++. ........+.+.+++++++++|+++.. .|.|.++-++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 579999999988754 47777777764 5442 222223344588999999999998875 589999998654433
Q ss_pred cee--eeccCCCc----------eeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCC
Q 028806 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~ 136 (203)
... +.. |.+. +... +.|+++++++.+- .-.|.+|++..|.....- ....+..-+.|.|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 221 111 3322 4555 8999999998764 235889999877643221 112233568999999999
Q ss_pred eEEEEe-CCCcEEEEeCCCc
Q 028806 137 FLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (203)
+....+ .+++|.+|.....
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 987766 6899999998774
No 261
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=2.3e-09 Score=55.00 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.6
Q ss_pred CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
++++.++.+|.. +|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999966 899999999999999999999999997
No 262
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.1e-09 Score=78.16 Aligned_cols=128 Identities=18% Similarity=0.306 Sum_probs=98.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC-----eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccc---
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~--- 72 (203)
.|...++++..|.++|.|.++|++.. .+...+ -|.+.|+++.... ++.+|++++.+|.|.+||++.. ++
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~ 336 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKS 336 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccc
Confidence 35556789999999999999999864 233333 4788899998776 7889999999999999999853 34
Q ss_pred ceeeeccCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC---CceEEEEEe
Q 028806 73 SDRFVGLSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~i~~i~~~ 132 (203)
+..+.+ |.+...-+ ..+....+++++.|...++|.+..|..+.+++.... ..+.+++|.
T Consensus 337 V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 337 VMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 677778 77655555 477788899999999999999999998888765422 134455553
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=2.9e-09 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=36.1
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
+++..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.96 E-value=1.9e-08 Score=74.03 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=73.4
Q ss_pred EcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Ee
Q 028806 13 TSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 13 ~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~ 89 (203)
|...|.|.+..+. .-.++.++.+|...+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhhh
Confidence 3334444443332 23456677899999999999999999999999999999999754444455666 77888888 45
Q ss_pred eCCCEEEEEcCCCcEEEEEcc
Q 028806 90 LDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~ 110 (203)
+--+.+++++.||.|-+|++.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 556778899999999999984
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1e-08 Score=80.05 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=110.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+.+.+++++.|.+|++|.++. ..+..+.+.|..+|.++.|..+.++++++ |+-|.+||.-. +..+..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456788999999999999874 23566778899999999999998887765 78899999753 44443221
Q ss_pred cc---CCCceeEEEeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccC----CCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.. ..+.|.++-+-+...++.+ +...+|+++|.+.++....++.- ...-+.+++..|.|++++.+-..|.|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 10 1233444434455566666 56789999999987765554322 1235789999999999999999999999
Q ss_pred EeCCCcccCC
Q 028806 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
.|.+++....
T Consensus 903 LDaR~G~vIN 912 (1034)
T KOG4190|consen 903 LDARNGKVIN 912 (1034)
T ss_pred EecCCCceec
Confidence 9999997554
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=1.2e-07 Score=72.79 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=102.3
Q ss_pred cccCCEEEEEcCCC-eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
..+++-++.|..|| .|-|++..+++. ..+...-+.|.++..+++|++++.+.....+.+.|+.+. .....-+. ..+
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~~ 444 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EYG 444 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-ccc
Confidence 34556778888888 899999998865 445556788999999999999999999999999999863 33333333 566
Q ss_pred ceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 83 SVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.|... |+|++++|+.+--+| .|++||+..++........ . .-.+-+|.|++++|..-+
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-c-cccCcccCCCCcEEEEEe
Confidence 78888 999999999876654 6999999988776544322 2 246789999999987554
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.9e-07 Score=73.33 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=91.9
Q ss_pred cccccCCEEEEE-cC--CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGT-SG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
.|||||+.|+.. +. +..|.++++.++.. ..+..+........|+|||+.|+..+. .+ .|++.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 589999877654 32 35688888887764 344444433455689999987776553 33 577777753 232 22
Q ss_pred eeccCCCceeEEEeeCCCEEEEEcCC---------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
+.. ... ....|+|+|++|+..... ..|.+.|+.++.... +... . ......|+|||+.|+.....
T Consensus 316 lt~-~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 322 111 122489999999876653 368888988776543 4333 2 23458899999988766532
Q ss_pred -CcEEEEeCCCc
Q 028806 145 -SMLKLWDLDDI 155 (203)
Q Consensus 145 -~~i~iwd~~~~ 155 (203)
..|.+.++...
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 24677777654
No 268
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.90 E-value=6.8e-08 Score=81.41 Aligned_cols=162 Identities=11% Similarity=0.126 Sum_probs=112.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--e-----EEEeecCC-ccceE-EEEEee--CCCEEEEecCCCeEEEEEcCCcc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSEFS-EEELT-SVVLMK--NGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~--~-----~~~~~~~~-~~~v~-~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
.+.+.+..+|.++.||.|++..+.-. . .......+ .+.+. ..++.. ....|+.+...+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 34567889999999999999998752 1 11111111 22233 333433 22367888888999999998533
Q ss_pred ccce-eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC---CeEEEEe--C
Q 028806 71 DCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSIS--H 143 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~ 143 (203)
..+. .... ..+.|+++ .+|.+.+++.|+..|.+.+||++-+.++..+......+|..+..+|-. ...++++ .
T Consensus 1185 ~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1185 DAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 2222 1222 45678888 799999999999999999999999888877765545578888877733 4555554 4
Q ss_pred CCcEEEEeCCCcccCCCCCCC
Q 028806 144 DSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 144 d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.+.|.+|++.++..+...+..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceeeeecccCcceEEEEcC
Confidence 678999999999777666654
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=2.2e-09 Score=82.10 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=111.0
Q ss_pred cccccC-CEEEEEcCCCeEEEEEcCCC------eEEEeec------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 2 TFAADA-MKLLGTSGDGTLSVCNLRKN------TVQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 2 ~~sp~~-~~l~~~~~d~~i~vw~~~~~------~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
+..|-. ..+++++.|-.+++||.+.- ..+..+. .....|++++++.++.-|.++-.|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 345544 47889999999999998641 1112221 2245699999998777777777788899994432
Q ss_pred c-c----------ccce-eeeccCCC--ceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 69 F-K----------DCSD-RFVGLSPN--SVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 69 ~-~----------~~~~-~~~~~~~~--~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
. + ..+. .+++ |.+ .|..+ |-|...++++|+.-|.|.||+-.+++.+..+.+... -|.|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 1122 2555 543 36666 589999999999999999999999999988887755 78999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 028806 133 HDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~ 152 (203)
|--..||+++-|..|+||-.
T Consensus 446 P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCchhhccCCccceeeecC
Confidence 99999999999999999975
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=9.4e-09 Score=82.37 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=115.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---------------EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++|+....+|++|+.||.++|.-+.+.. .-+++++|...|.-+.|+.+.+.|.++..+|.|.+|-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 3688899999999999999999876421 1246789999999999999999999999999999998
Q ss_pred cCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
+-.+.-+...+..+..+.|.++ |+.+|..|...-.||.|.+=.+...+.- +.+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8643333333333356678888 9999999999999999887776543322 222222 3457889999888888888
Q ss_pred CCcEEEEeCCC
Q 028806 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.|.+.++|-..
T Consensus 177 nge~hlydnqg 187 (1189)
T KOG2041|consen 177 NGETHLYDNQG 187 (1189)
T ss_pred CCcEEEecccc
Confidence 89999998644
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=3.7e-07 Score=65.40 Aligned_cols=148 Identities=10% Similarity=-0.020 Sum_probs=98.5
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-ccCCCceeEE-
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNSVDAL- 87 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~v~~~- 87 (203)
+..++.|.++++.++..+.....+-...-.+.++.++++++++++.+....|.+|.+....+.+.... ......-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 34456667777776654322211111112378899999999999999999999999976554443321 1022222334
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCce-e----eeeccCCCCceEEEEEeCCCC--eEEEEeCCCcEEEEeCCCcccC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRI-I----QPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~-~----~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|+.....++++..||.+.|||++.... . .+-..| .+++..+.|++-|. +|+..-.-+.+.+.|++++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~h-nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHH-NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCC-CCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 888889999999999999999986432 1 222334 45899999998664 3444445678999999988654
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.88 E-value=1.3e-06 Score=66.58 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=103.2
Q ss_pred CcccccCCEEEEEc-C-CCeEEEEEcCCCeEEEeecCCcc-------------------------------ceEEE----
Q 028806 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~-d~~i~vw~~~~~~~~~~~~~~~~-------------------------------~v~~~---- 43 (203)
++++|||++|+... . +..|-|+|+.+++.+..+..... .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999988765 3 68899999988776654421100 01111
Q ss_pred ----------EEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeec------cCCCceeEE-EeeCCCEEEEEcC-
Q 028806 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSE- 100 (203)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~- 100 (203)
.+.+ ++++++++.. |+|++.|+... ...+..+.. ........+ ++|+++.+++...
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1123 6666666655 89999986421 122222211 012222336 7999999888432
Q ss_pred ---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028806 101 ---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 101 ---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.++....
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 247999999999999888765 3 689999999999 777666 67889999998886543
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=1.1e-08 Score=76.46 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEE
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVI 96 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 96 (203)
..+.+|....+.. ..+-+|-+.++.++|+||.++++++..|..|++-.+......-.-+.+ |...|..+.--++..|+
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLL 209 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceee
Confidence 3444555444322 344578899999999999999999999999999877632222223456 88888888545566799
Q ss_pred EEcCCCcEEEEEccCCceeeee
Q 028806 97 TGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 97 ~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+++.|++|++||+.+|+.+.++
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecCCCCcEEEEecccCCccccc
Confidence 9999999999999999876554
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.8e-07 Score=75.72 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=114.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC------------CEEEEecCCCeEEEEEcCCc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~~wd~~~~ 69 (203)
.|+|.| +||.|+. ..|.|.|..+-+.++.++.|...|+.+.|.|-. -.++++...|.|.+||...
T Consensus 22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~- 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL- 98 (1062)
T ss_pred ccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-
Confidence 577766 6777765 689999999999999999999999999998731 2566777889999999974
Q ss_pred cccceeeeccCCCceeEE-Ee---eCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LK---LDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISH 143 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~---~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~ 143 (203)
...+..+.. +..++..+ |- ++. ..+++......|.+|+..+|+.......... ...|+.+.| +.+++...+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEcc
Confidence 344445565 67777777 53 344 5666777778899999999999888766644 677899999 6678888787
Q ss_pred CCcEEEEeCCCc
Q 028806 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
.|.+.+-+.-..
T Consensus 177 ~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 177 KGFVLSCKDLGL 188 (1062)
T ss_pred CceEEEEeccCC
Confidence 888877766443
No 275
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.2e-08 Score=78.07 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=118.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccc--ee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~--~~ 75 (203)
|-|+..|..|++|+.|..|.+||...+.....+. +|...|....|.|. -..+++++.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 3578889999999999999999998877665554 67778888888884 3678999999999998776444332 33
Q ss_pred eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeec--cCCCC---ceEEEEEeCCCC-eEEEEeCCCcE
Q 028806 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIA--EHSEY---PIESLALSHDRK-FLGSISHDSML 147 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~---~i~~i~~~~~~~-~l~~~~~d~~i 147 (203)
+.. |.+++..+ .-|. ...|++++.|+.+.-+|++.+.+...+. .+... ..+.++.+|-.. .+++++.|.-+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 445 88888888 5554 4568899999999999998876543332 22121 467888999654 78999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876554
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.5e-06 Score=64.55 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=101.4
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEE----eecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~ 75 (203)
.|.|++++|++... --.|.+|++..+.+.. .+ ......+.|.|+|++++.++.+. +++|.+|........+..
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 47899999988753 3469999998765422 22 34567889999999999887775 899999999753222222
Q ss_pred eec--------cCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEccC--Ccee--eeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 76 FVG--------LSPNSVDAL-LKLDEDRVITGSEN-GLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 76 ~~~--------~~~~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~~~--~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+.. ........+ .+|+|++|+++... ..|.++.+.. ++.. .....+ +...+...|+|.+++|+++
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEE
Confidence 221 012345566 79999999998763 3677777654 3322 112222 2235789999999999988
Q ss_pred eCC-CcEEEEeCC
Q 028806 142 SHD-SMLKLWDLD 153 (203)
Q Consensus 142 ~~d-~~i~iwd~~ 153 (203)
..+ ..|.+|.+.
T Consensus 309 ~q~sd~i~vf~~d 321 (346)
T COG2706 309 NQKSDNITVFERD 321 (346)
T ss_pred ccCCCcEEEEEEc
Confidence 854 568888664
No 277
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=4.8e-08 Score=68.34 Aligned_cols=111 Identities=27% Similarity=0.466 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEE--eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc
Q 028806 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 125 (203)
-+..+++|+.+|.|++|.....+.....+.. ....+-+.+ -.++.+..+++.+|.|+.|++..++.+.....|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3567899999999999998754555444444 455555553 3456688899999999999999888887777775346
Q ss_pred eEEEEEeCCCCeEEEE--eCCCcEEEEeCCCcccCC
Q 028806 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~ 159 (203)
+.....+..+..|+.+ +.|..++.|++.......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 6667777777888887 889999999987665443
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=2.3e-08 Score=71.04 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecC-----CCeEEEEEcCCccccceeeeccC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.++++..||.+.+++.+.-. ....+........+.++...++.+.++.. -+..+.|+++..+..+.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-- 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-- 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--
Confidence 5678888999999999876511 11111111111222333344555444322 235667776532222211121
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.++ -+| +.+.+++|+.+|.+.+||.+... +...+..|.. +|+.+.|+| ++..|++++.||.+-.||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2337777 466 45667788889999999998763 4556778854 899999999 668999999999999999885
No 279
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-07 Score=70.04 Aligned_cols=150 Identities=14% Similarity=0.252 Sum_probs=100.1
Q ss_pred CcccccCC--EEEEEcCCCeEEEEEcCCCeEE-----------------------------------Eee-cCCccceEE
Q 028806 1 MTFAADAM--KLLGTSGDGTLSVCNLRKNTVQ-----------------------------------TRS-EFSEEELTS 42 (203)
Q Consensus 1 l~~sp~~~--~l~~~~~d~~i~vw~~~~~~~~-----------------------------------~~~-~~~~~~v~~ 42 (203)
+.|.++++ .++..+.|.+|++|-+...... +.+ ..|...|.+
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 35666654 4566678899999987531100 000 236677899
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceee--eccC-----CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCc
Q 028806 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLS-----PNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~-----~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~ 113 (203)
|.++.|...++++. |=.|.+|.+....+....+ +. + ...|++. |+|. .+.++.++..|.|++.|++...
T Consensus 170 IS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeecCccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 99999999888865 6789999986544433332 22 1 1346667 8884 6788888999999999998432
Q ss_pred e----eeeeccCCC-----------CceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 114 I----IQPIAEHSE-----------YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 114 ~----~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. .+.+....+ ..|..+.|+++|+|+++-.. -+|++||+.
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 1 111111100 25888999999999998764 479999983
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=4.6e-08 Score=69.58 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=79.2
Q ss_pred cceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028806 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 38 ~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
..|.+++-+|. .+.+++|+.+|.+-+||+++...+...+.. |+.+++.+ |+| ++..|++++.||.+..||..+ ..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce
Confidence 34888888884 466778889999999999976566667777 99999999 988 578899999999999999753 22
Q ss_pred eeeecc---C-----CC-------------CceEEE-EEeCCCCeEEEEeCCCcEEEEe
Q 028806 115 IQPIAE---H-----SE-------------YPIESL-ALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 115 ~~~~~~---~-----~~-------------~~i~~i-~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. + .+ ....++ .|.--|..|++|+.-+.|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 211000 0 00 011111 2444677888888888888864
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.78 E-value=2.8e-07 Score=68.04 Aligned_cols=160 Identities=12% Similarity=0.179 Sum_probs=114.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE--------------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL-------------- 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-------------- 63 (203)
.++++...|+.|-..|++.-+.+.. ....+....|..++..+.|+....++++.+.|..+.-
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4567778888888889988887653 2233444567777877777766666666655543221
Q ss_pred -------------------------EEcC-CccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-ee
Q 028806 64 -------------------------YSWG-YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II 115 (203)
Q Consensus 64 -------------------------wd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~ 115 (203)
-.+. +.-..+.++.+ |...+.++ |.|....+++|..|..+.+||+.-++ ..
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 1000 01123445667 88899999 89999999999999999999987543 33
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (203)
..+.+|.. .|..+...+--+.|++++.||.|.+|+..........+.
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccc
Confidence 45667755 788888888888999999999999999987776665554
No 282
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.8e-07 Score=76.95 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=103.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---------CCeEEEEEcCCcccccee
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~ 75 (203)
.+++.+.+|...|+|.+-|..+.+.+.++..|.+.|..+ .-.|+.|++++. |..|+|||+++- +.+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 356889999999999999999999999999999988655 457899998875 456889999853 33333
Q ss_pred eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-Cce-eeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI-IQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~~~-~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.- +.++ .-+ |+|. ...+++++..|...+.|..+ +.+ ......+. +..+..+.++++++.++.+..+|.|.+|
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 332 3333 333 7775 45677788888898888322 222 22221221 2248999999999999999999999999
Q ss_pred e
Q 028806 151 D 151 (203)
Q Consensus 151 d 151 (203)
-
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 7
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.2e-06 Score=62.93 Aligned_cols=147 Identities=10% Similarity=0.023 Sum_probs=96.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEE-EeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeeccCCC--c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN--S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~ 83 (203)
-+||.|+..|...+|.+.+.+.. .....+...|.-+.-..+ ...+..++.|.++++.++.. +.....+ |.. .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~-~s~~~~~---h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG-DSNKFAV---HNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec-Cccccee---eccccc
Confidence 47888888999999999865432 233333322221111111 22355667888888888863 2222222 332 2
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCC-c-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPN-R-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.++ +++++.++++.+....|.+|.+... + .+.+....+...-.+..|+.....+|++..||.+.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 5666 7999999999999999999988642 2 233233332224578899999999999999999999999887543
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2e-07 Score=72.76 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=94.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-----------CCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~ 69 (203)
+.|||.|.+|++-..-| |.+|--..-..++.+. | ..|..+.|||..++|++-+. ...++|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 46999999999987754 8899765544444443 3 34888999999999998543 25799999985
Q ss_pred cccceeeecc-CCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 70 KDCSDRFVGL-SPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~~~~~~~~-~~~~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+...+.|... ....++.+ ||.++++++.-..+ .|.||+..+..++-.-...-. .|....|+|.++.||--
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCc-cccCcccCCCcceEEEE
Confidence 5666655430 23456667 79999999977764 588998665333321111112 58888999998888743
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=9.2e-06 Score=60.25 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=101.0
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecC-------CC---------
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-------SG--------- 59 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~--------- 59 (203)
.|||||++|++.- ..|.|-|||.. +-+.+..+..+.-....+.+.|++..|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 5899999998863 35889999998 56777788877777788999999988877532 12
Q ss_pred --eEEEEEcCCcccccee--e--eccCCCceeEE-EeeCCCEEEEEcCCCc-------EEEEEccCCceeeeeccCC---
Q 028806 60 --TVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAEHS--- 122 (203)
Q Consensus 60 --~i~~wd~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~~--- 122 (203)
++.+.|..+ +..+.. + .- |...++.+ +.++|..++..-..|. |.++. .+..+..+....
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 233333332 333333 2 22 44567777 7778776665544332 33333 233233332211
Q ss_pred ---CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 123 ---EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 ---~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
..-|-+|++++++.++++.+ ..+.+.+||..++.....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 12588999999998886666 778899999998876544
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.63 E-value=2.2e-06 Score=66.39 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=100.0
Q ss_pred CcccccCCEEEEEc-----------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~ 67 (203)
+.|++.|++|+.-. ...+++++++....+.... .-.++|...+|.|.++.+++.+ ....+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence 35788888765421 1356788888744332222 4578999999999888776554 67889999987
Q ss_pred CccccceeeeccCCCceeEEEeeCCCEEEEEcC---CCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEe-
Q 028806 68 YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE---NGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSIS- 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~- 142 (203)
. .....+.. ...-+-+|+|.+++++.++- .|.+-+||....-.. ..+.+. ...-+.|+|+++++.+..
T Consensus 307 ~--Nl~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 307 G--NLRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred c--ceEEecCC--cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 3 33333322 22233348999999998765 478999997654333 355544 345678999999988765
Q ss_pred -----CCCcEEEEeCCCcc
Q 028806 143 -----HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 -----~d~~i~iwd~~~~~ 156 (203)
.|..|.|||+....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 37789999986543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=1.4e-05 Score=69.60 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=96.7
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCeEEEeecCC-----------------ccceEEEEEee-CCCEEEEecCCCeE
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFS-----------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i 61 (203)
|+++++++.|+++. ..+.|+++|+.++.. .++.+. -...+.++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 35677777665543 456799999877643 222110 11246799999 55666676778899
Q ss_pred EEEEcCCccccceeeec--------------cCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeecc-----
Q 028806 62 LLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAE----- 120 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~----- 120 (203)
++|+.... .+..+.+ ........+ ++|++..|+++ ..++.|++||+.++.......+
T Consensus 708 ~v~d~~~g--~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG--VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC--eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998532 1122211 001234456 89999865554 5578999999987653211100
Q ss_pred --------CC-------CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 121 --------HS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 121 --------~~-------~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.. ......++++++|..+++-..++.|++||..++..
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 00 01235889999999888888899999999876543
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.1e-06 Score=69.87 Aligned_cols=140 Identities=12% Similarity=0.261 Sum_probs=100.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-----CCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
+|.++++|+.||+|.|..+-+.+....+.- ..++.+++++|+ .+.+++|+..| +.++.-+-.+.... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 689999999999999999988766555543 467899999997 56899999888 77776432222222 2444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-----ceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..++|.++ | .|++|+-++..| |+|||+.+++.+..++..... --..+.|.++.+.+ . |...+|+|..++
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEe
Confidence 67888888 5 578999999988 899999988777665433221 12356787765443 3 344578888887
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=1.9e-05 Score=57.78 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred CcccccCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~ 71 (203)
+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.....
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3578899877765443 557777766 55433332 345578999999998776 556688899999864332
Q ss_pred cc---eee---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEE
Q 028806 72 CS---DRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 72 ~~---~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 141 (203)
.+ ..+ .. ..+....+ +..+|++.++....+.|.+++.+ |+.+..+..... .+++++|. ++...|+..
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 122 11 11235566 78899888887788999999987 888887776634 78999994 565655543
No 290
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.56 E-value=7.7e-06 Score=64.66 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=61.2
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....+.++ ++|+...++.|+.||.|.+||...+..... .. ......++|+|+|..+++|+..|.|.+||+.-....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 45567777 899999999999999999999876643322 22 235788999999999999999999999998765544
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.56 E-value=2.5e-07 Score=74.68 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=109.0
Q ss_pred cccccC--CEEEEEcCCCeEEEEEcCC---CeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADA--MKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~--~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
.|||.. .+-++......-.+|++.. ......+-+|...|+.+-|+|+. ..+++++.|..+..||++....++..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 466543 2333333445566888763 23445666899999999999966 56789999999999999876666555
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCCcEEEEeC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~ 152 (203)
+.. -......+ |+.....+++.+....|.+||++-| .++..+++|.. .|..+.|+.- ...+.+++.|++++.||.
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 554 33444556 8776666666677788999999865 56777888754 7888888763 346778889999999997
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 232 ~kSt 235 (1081)
T KOG0309|consen 232 SKST 235 (1081)
T ss_pred cccc
Confidence 6543
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.53 E-value=8.2e-06 Score=63.48 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.+|.++.||..+++.+...... ....+. ..+..+++++.+|.++.+|..+. ..+-.... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEcccc-ccCCccc
Confidence 456777778899999999999877665421 111222 34667888888999999999753 33322211 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE-EEEEeCCCCeEEEEeCCCcEEEE
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....+..+++++.+|.|+++|..+|+.+..+..+.. .+. +..+. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1122467889999999999999999999988876543 222 22332 3 458888899999876
No 293
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.52 E-value=4.2e-06 Score=65.72 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred cccccCCEEEEEc---CC-CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCe--EEEEEcCCccccce
Q 028806 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--i~~wd~~~~~~~~~ 74 (203)
+|+|+++.++... .. ..+.++++.+++....+. ..+.-...+|+|||++|+.+ ..|+. |+++|+. +....
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~--~~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD--GKNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--CCcce
Confidence 5889998765542 22 458999998875544333 22334457899999887654 45665 5555654 33344
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CCc--E
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--L 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~--i 147 (203)
.+.. ..+.-..- |+|+|++|+..+. .| .|.+++++.+.. ..+..... .-....|+|+|.+|+..+. +|. |
T Consensus 276 ~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 276 RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEEEEeccCCceee
Confidence 4543 22222233 8999999998765 34 366777665544 33333322 2237789999999987774 344 6
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.++.+..
T Consensus 353 ~~~~~~~~~ 361 (425)
T COG0823 353 DKNDLASGG 361 (425)
T ss_pred EEeccCCCC
Confidence 666665544
No 294
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=3.2e-06 Score=66.72 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
...+.+.+++++|+...|+.|+.||+|.+||.... +..+.. ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999998632 222333 34445666 999999999999999999999854
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=4.7e-07 Score=73.12 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=102.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|.|+|+.. .+++++-|..+..||++... +......-......++|+-....+...+....|++||++....++..+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 35777664 67889999999999998753 33333333455678899874444455566778999999988888888898
Q ss_pred cCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~ 153 (203)
|...+..+ |. -....+++++.||+|++||-............+..+|+--.+.|-| .++.-.-.+..+.+++.+
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecccc
Confidence 88888888 63 3556788999999999999765433333333334577777777743 333322223344444433
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=4.8e-05 Score=55.21 Aligned_cols=155 Identities=8% Similarity=0.061 Sum_probs=97.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++.+++|+.||.. .|..|.|-..+.. ..+... +.....=+.++|+||+..|+.+...|+|++||+. +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888775 6688888877653 222222 2333456789999999999999999999999985 233333
Q ss_pred eec------cCCCceeEE-Ee-eC-----CCEEEEEcCCCcEEEEEccCC-----ce--eeeeccCCCCceEEEEEeCCC
Q 028806 76 FVG------LSPNSVDAL-LK-LD-----EDRVITGSENGLISLVGILPN-----RI--IQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 76 ~~~------~~~~~v~~~-~~-~~-----~~~l~~~~~d~~i~~~d~~~~-----~~--~~~~~~~~~~~i~~i~~~~~~ 135 (203)
+.. .....|..+ |- +. ...|++....|.++-|-+..+ +. ...+..|-...|.++.++|.-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 41 21 235667777888887765322 22 233333433479999999998
Q ss_pred CeEEEEeCC-C----------cEEEEeCCCcccC
Q 028806 136 KFLGSISHD-S----------MLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l~~~~~d-~----------~i~iwd~~~~~~~ 158 (203)
+.|++|+.. . -+..|.+-+..+-
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY 193 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence 888877631 1 2566666555443
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.6e-06 Score=67.49 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++++.|+..|.|++.+..... .+...|... ...|.++++|+.||.+.+..+.+. .....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 5688999999999999977543 333334332 567999999999999999988754 3333333 3456777
Q ss_pred E-EeeC-----CCEEEEEcCCCcEEEEEccC-Cceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~-----~~~l~~~~~d~~i~~~d~~~-~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ++|+ .+.+++|+..| +.++.-+- |.... .+... .++|.++.| .|+++|.++.+| |+|||+.+.+.-
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcEEEEecCCC-cEEEecccccee
Confidence 7 7886 57789999988 77765331 11111 23333 348999999 677999888666 899999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 193 ~ 193 (846)
T KOG2066|consen 193 T 193 (846)
T ss_pred e
Confidence 3
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.48 E-value=3.6e-05 Score=58.82 Aligned_cols=101 Identities=8% Similarity=-0.081 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC----------CCeEEEEEcCCccccceeeeccCCC----
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVGLSPN---- 82 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~---- 82 (203)
+.|.|+|..+.+.+.++.....+- .+ ++|+++.|+++.. +..|.+||+.+. ..+..+.. ...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~-p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIEL-PEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEcc-CCCchhh
Confidence 899999999999988887543332 34 8999998877655 689999999853 44444432 111
Q ss_pred ---ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028806 83 ---SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 121 (203)
....+ ++|+|+++++... +..|.++|+.+++.+.++...
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 11133 7999999998873 688999999999988887654
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=1.2e-05 Score=69.10 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=97.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-------------C--eEE--------EeecC----------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------------N--TVQ--------TRSEF---------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-------------~--~~~--------~~~~~---------------------- 35 (203)
++||||+..|+..+.+++|.+.+-.= + +.+ ..+.+
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 47999999999998888887765320 0 000 01100
Q ss_pred --CccceEEEEEeeCCCEEEEecC---C---CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcC---CCc
Q 028806 36 --SEEELTSVVLMKNGRKVVCGSQ---S---GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (203)
Q Consensus 36 --~~~~v~~~~~~~~~~~l~~~~~---d---~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~ 103 (203)
....-..|+|-.||.+|++.+- . ..++||+-. +....+... -.+--.++ |.|.|++|++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1123457889999999998764 2 578999854 333322222 23333455 8999999998765 345
Q ss_pred EEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 104 i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.+|. ++|.....+.. +....|..+.|++++..||....|. |.+|-..+.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 66665 45655444432 2234799999999999999977655 999976654
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.47 E-value=3.8e-05 Score=55.69 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=92.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC--
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-- 82 (203)
+++..+++++.++.|+.||..+|+.+...... ..+.... ...+..+++++.++.++.+|..+.......... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccc-ccccc
Confidence 35677888889999999999999988777642 2211112 234556666667889999998764333332232 211
Q ss_pred ceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC---c------eEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 83 SVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---P------IESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 83 ~v~~-~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~------i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. . ....+..++++..++.|..+|+.+|+.+......... . +..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1111 1 3445888899988999999999999998777654321 1 1122222244 666667677544449
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+.++.
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 88887
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=9.2e-08 Score=78.60 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=102.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+-+.++|+.|+..|.|+++++.+|.......+|.+.|+.+.-+.+|..+++.+.-. -..+|++.......+.|..
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888899999999999999999999998888999999999999888998877665433 4678998765555555543
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
-.++ |+..-..-+.|+..-...+||++++..+.++-... ...-.++.|+|+...++- || .+||++.
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence 2344 65544444555555678899999988776632211 113356778887766642 33 3555554
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 1257 ~ 1257 (1516)
T KOG1832|consen 1257 P 1257 (1516)
T ss_pred H
Confidence 4
No 302
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3.1e-06 Score=66.23 Aligned_cols=124 Identities=10% Similarity=0.115 Sum_probs=85.7
Q ss_pred CcccccCCEEE--EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLL--GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~--~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
+.|+|+++-++ .|-.=..+.|+|++.. ++..+ .+++-+++-|+|.|++++.++. -|.+.+||+.+ ..++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 46999997554 4455678899998753 44433 4566788999999999998776 47999999985 566666
Q ss_pred eeccCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+.. .....+-|+|+|.+|++++. |+.++||+. +|..+....-.. ..+.+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 654 33333339999999999875 567899996 455553322211 256667765
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.4e-06 Score=62.64 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=62.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|||..+ ++..++.+..|.|.|+++...+.....+ ..+++++|.-+. ++++.|..+|.|.+||++....++..+.
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 57899776 7888999999999999998888877776 789999998765 5677777899999999986555544443
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.2e-06 Score=64.11 Aligned_cols=159 Identities=9% Similarity=0.042 Sum_probs=106.3
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEe-eCC---CEEEE-ecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNG---RKVVC-GSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~l~~-~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+.+-++.++++... |..++++|+.+-..+..++... ..-.+.|. ..| ..+++ .-.++.+.++|-.....+...
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 45667777888666 9999999988644432222111 11112222 122 13333 335789999997654434444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCC--------CCceEEEEEeCCCCeEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHS--------EYPIESLALSHDRKFLGS 140 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~ 140 (203)
+...|..+|.++ +.+.+..+++....|.|.-|.... .+....++..+ .....++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 554488999999 899999999999999999998762 11111111110 124678999999999999
Q ss_pred EeCCCcEEEEeCCCcccCCCC
Q 028806 141 ISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~~~~ 161 (203)
-+.|..|+++.+.++...+..
T Consensus 219 l~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cCcccEEEEEEeccchhhhhh
Confidence 999999999999998876553
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.43 E-value=3.3e-05 Score=55.97 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCeEEEeecCC--ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCC
Q 028806 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED 93 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 93 (203)
+|+|..||..+++.+...... .....+. ..+++..+++++.++.++.||..+ +..+..+.. .. .+.......+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~-~~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PG-PISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SS-CGGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cc-cccceeeeccc
Confidence 689999999999988877531 1222211 334566777778899999999875 444444432 12 21111233556
Q ss_pred EEEEEcCCCcEEEEEccCCceeeee-ccCCC-C-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 94 RVITGSENGLISLVGILPNRIIQPI-AEHSE-Y-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~-~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++++.++.|..+|..+|+.+... ..... . ....+.....+..++.+..++.|..+|++++...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 6677778889999999999998874 32211 0 1122333334788888888999999999988763
No 306
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.43 E-value=4.3e-06 Score=65.64 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=82.9
Q ss_pred cccccCCEEEEE-cCCCe--EEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~--i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||||++|+.+ ..||. |+++|+.++.. ..+....+.-..-.|+|+|++++..+ ..|.-.||-+...+.....+.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 699999987655 45554 66667776653 33554444445778999999887655 455545554433344445554
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. ....-... ++|+|.+|+..+.. |. |.++++.++..+..+... . ......|.|+++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 33332233 89999999987753 43 666777666544444332 1 344566777777666444
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=2.7e-05 Score=63.04 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=97.6
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC------------------------
Q 028806 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 57 (203)
++|||+.+... -..+.+.++|..+.+....+.-. .....++++|++.++++++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45677655333 33567888888887776665532 24466778888888776651
Q ss_pred ----------------CCeEEEEEcCC----ccccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce-
Q 028806 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI- 114 (203)
Q Consensus 58 ----------------d~~i~~wd~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~- 114 (203)
++.|.+.|..+ .......+. -......+ ++|+|+++++++. +..|.|+|+...+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23466666653 112233333 23445667 8999999988775 78999999987542
Q ss_pred -----------eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 115 -----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 -----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..+.....+ + ...+|.++|....+...|..|..|++..
T Consensus 357 ~~~~~~~~~~vvaevevGlG-P-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLG-P-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCC-c-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 334443322 3 4678999998888888999999999876
No 308
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.40 E-value=1.5e-05 Score=68.40 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=97.0
Q ss_pred CcccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~ 71 (203)
|+|-.||+++|+.+- -..++||+-+ |.+..+.+.-.+--.+++|-|.|+++++... ...|.+|.-+ |.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468899999988753 2579999955 6665555544444457899999999998764 3456677643 22
Q ss_pred cceeee----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCC-CeEEEEeC
Q 028806 72 CSDRFV----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR-KFLGSISH 143 (203)
Q Consensus 72 ~~~~~~----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~ 143 (203)
....|. . ....+..+ |++++..|+....+. |++|-..+.. ..+.+.......+..+.|+|.. ..|...+.
T Consensus 292 rhgeF~l~~~~-~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 292 RHGEFTLRFDP-EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred EeeeEecCCCC-CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 222222 2 34578888 999999999977665 9999987754 2233333222245569999965 44666666
Q ss_pred CCcEEEEeC
Q 028806 144 DSMLKLWDL 152 (203)
Q Consensus 144 d~~i~iwd~ 152 (203)
++.+..+++
T Consensus 370 ~g~~~~~~~ 378 (928)
T PF04762_consen 370 NGQYEIYDF 378 (928)
T ss_pred CCcEEEEEE
Confidence 677655543
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=5.2e-06 Score=60.95 Aligned_cols=118 Identities=10% Similarity=0.166 Sum_probs=79.1
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--eccCC-----CceeEE-EeeC-CCEEEEEcCCCcEEE
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSP-----NSVDAL-LKLD-EDRVITGSENGLISL 106 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~-----~~v~~~-~~~~-~~~l~~~~~d~~i~~ 106 (203)
|...|.++.++.|...++++. +-.|.+|.+.........+ ++ +. ..|++. |+|. .+.+..++..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 555678888888888777754 6789999886543333322 22 22 246666 8884 567778888999999
Q ss_pred EEccCCc------eeeeeccC---------CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNR------IIQPIAEH---------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~------~~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++... .+...... --..|..+.|+++|+++++-.. -+++|||++...
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998421 11111100 0136888999999999998764 479999987654
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=9.7e-05 Score=54.94 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=96.2
Q ss_pred Ccccc-cCCEEEEEcCCCe-EEEEEcCCCeEEEeecCCccce--EEEEEeeCCCEEEEecC-----CCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~ 71 (203)
++.+| ....++.+-+-|+ +.+||..+++....+.....+- -.-.|++||++|++.-. .|.|-|||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35678 4556677766554 7799999998887776544432 24579999999998644 47899999974344
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeecc----CCCCceEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAE----HSEYPIES 128 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~----~~~~~i~~ 128 (203)
.+..+.. +.-....+ +.|+|+.|+++.. +-.+.+.|..+|+.+..... | ...|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~lSiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QLSIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-ccceee
Confidence 4555655 44444455 8999988887642 22455667778887766432 4 237999
Q ss_pred EEEeCCCCeEEEEeC
Q 028806 129 LALSHDRKFLGSISH 143 (203)
Q Consensus 129 i~~~~~~~~l~~~~~ 143 (203)
+++.++|..++..-.
T Consensus 168 La~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQY 182 (305)
T ss_pred EEecCCCcEEEEEec
Confidence 999999876665443
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=6.3e-05 Score=58.56 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=94.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
.+..+++++.++.|..+|..+|+.+............+. .++..+++++.++.++.+|..+. +.+-.... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDG-KELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCC-cEeeeecc--Cceee
Confidence 356778888889999999999988876654332222222 25677888888999999998754 43333322 12222
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.-.-.+..++.++.++.|+.+|..+|+.+..+..... .+ .+.... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 22111345777788899999999999998877654421 11 111121 2 4677777889999999988754
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=4.7e-05 Score=60.18 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=80.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.++|+|++++++ .+|...|+.....+... .+.-...+|.+.+ .+++-...++|.++.-- .......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~-~~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNF-KNEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETT-EE-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcC-ccccceEEcC--
Confidence 4689999999885 45888888855444332 2334457888854 46666668889997322 1223233433
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+..+|. |.+|...+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.+ .+.|++..
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 334566655 7777776555 7999999999999988754 58999999999999988754 67887654
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=3.4e-05 Score=62.45 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----------cceeeec
Q 028806 16 DGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVG 78 (203)
Q Consensus 16 d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~-----------~~~~~~~ 78 (203)
++.|.|+|..+ ...+..+.. ....+.+.++|||+++++++. +.++.|+|+..... .......
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888776 344444443 455788999999999887765 88999999975322 1222222
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
..+++..-|.++|+...+...|..|..|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 34555555888998777788899999999875
No 314
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.35 E-value=3.5e-05 Score=64.35 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=95.4
Q ss_pred CCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccc-eEEEEEee-----CCCEEEEecCCCeEEEEEcCCcccccee--ee
Q 028806 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDR--FV 77 (203)
Q Consensus 7 ~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~ 77 (203)
.++|+.- .....|+-.|+..|+.+.....+... |..++-.. .....+.|-.+..+..||.+..+..+.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999888876643 55543221 1234556667788999999865432211 11
Q ss_pred cc-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GL-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+ ......|+......+|++|+.+|.|++||--..+....+++- +.+|..|..+.||++|+..| +..|.++++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 10 234456666666678999999999999994322333345554 34999999999999988766 456777775
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.35 E-value=0.00032 Score=51.29 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=89.7
Q ss_pred ccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CccceEEEEEeeCCCEEEEecCC--------CeEEEEEcC
Q 028806 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~~ 67 (203)
++. +++.++++ .. +.+.++|..+++....... .....+.+++.|+|++.++.... +.++.++..
T Consensus 46 ~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCCEEEEE-Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 344 45544444 44 4456669888755433322 34568899999999977765443 456666654
Q ss_pred CccccceeeeccCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCce-------eeeeccCCCCceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRI-------IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
+. +..+.. .......+ |+|+++.|+. -+..+.|..|++..... ...+.... ...-.+++..+|++.
T Consensus 124 --~~-~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GK-VTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLW 198 (246)
T ss_dssp --SE-EEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EE
T ss_pred --Ce-EEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEE
Confidence 22 233333 34455677 8999998764 45678899999863221 11122221 136789999999988
Q ss_pred EEEeCCCcEEEEeCCC
Q 028806 139 GSISHDSMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (203)
++....+.|.+++...
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8777889999999763
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2e-05 Score=62.00 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred CccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEc---CCCcEEEEE
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVG 108 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~i~~~d 108 (203)
....|...+|-|.|..+++.+. ..++.+|.+.........+..........+ |+|.|++++.+. ..|.+.+||
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 3567889999999988876543 457888888632211111111022345667 899999988764 578899999
Q ss_pred ccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCcc
Q 028806 109 ILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDIL 156 (203)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 156 (203)
+.-..... ....|. ..+.+.|.|.|+|+++++. |..-++|++....
T Consensus 524 ~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 524 TDYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred cchhhhhhccCcccc--ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 87433222 223342 4678999999999998874 4457888876654
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.27 E-value=1.6e-05 Score=58.46 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=102.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCc-----cceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSE-----EELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.|+.|...++++ .|=.|.+|++.-. -.+..++.|. .-|++..|+|.. +.+..++..|.|++-|++....+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 466677777775 4567899998632 2233444443 457888899954 56777888999999999843211
Q ss_pred ce---e------------eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCC-----------C
Q 028806 73 SD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSE-----------Y 124 (203)
Q Consensus 73 ~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~-----------~ 124 (203)
.. . +.. -...|..+ |+++|++|++-+.. +|++||++.. .++.++..|.. .
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 0 111 22456667 89999999886654 6999998753 56777755421 1
Q ss_pred ce---EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 125 PI---ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 125 ~i---~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+| ..+.|+.+...+++|+..+..-+|-..+...
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccccCCC
Confidence 23 3578899999999999998888887555433
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=1.8e-05 Score=64.25 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=91.7
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....++.|+....++++|+.||.+++..+.+.. ..-+++.+ |...|..+ |+.+.+.+-++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 4568899999999999999999999999875321 12245678 88999999 99999999999999
Q ss_pred CcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 102 GLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.|-+|-+-.|.-...+ .....+-|.+|+|+.+|+.++..-.||.|.+=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 99999998877644333 222233688999999999999888888886655443
No 319
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.24 E-value=0.00029 Score=44.28 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=69.7
Q ss_pred eEEEEEee---CC-CEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 40 LTSVVLMK---NG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 v~~~~~~~---~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
|++|++.. +| +.|++|+.|..|++|+- ...+..+.. ...+.++..-.+..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeC--ccee
Confidence 56666654 32 68999999999999984 355666653 66788885555578999999999999984 2334
Q ss_pred eeeccCCCCceEEEEEeC-C--C-CeEEEEeCCCcEEE
Q 028806 116 QPIAEHSEYPIESLALSH-D--R-KFLGSISHDSMLKL 149 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~-~--~-~~l~~~~~d~~i~i 149 (203)
..++... .+.++.+.. + | ..|++|-.+|.|-+
T Consensus 75 WRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4444432 466665543 3 3 36888888888753
No 320
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.7e-06 Score=66.91 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=88.3
Q ss_pred EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc------cceeeeccCCCceeEE-EeeCCCEEEEEcCCC
Q 028806 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~ 102 (203)
+..+.+|...|+.++-..+.+.+++++.|.++++|.++..+. +..++.. |..+|..+ |-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeec--cC
Confidence 456678888888888777888999999999999999975432 3345667 88999999 87777776654 67
Q ss_pred cEEEEEccCCceeeeecc-CCCCceEEEEEeCC--CCeEEEE-eCCCcEEEEeCCCcc
Q 028806 103 LISLVGILPNRIIQPIAE-HSEYPIESLALSHD--RKFLGSI-SHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~--~~~l~~~-~~d~~i~iwd~~~~~ 156 (203)
.|++||.--++++..+.. ...+.+..+..-|+ ...++.+ +...+++++|.+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 899999887777654322 11223444444443 3444444 578899999988764
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.2e-06 Score=65.60 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=69.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|.-.+||++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.+++|-.||+|++.|+............
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999998887 677788886777777 9999999999999999999999999864433332222
Q ss_pred CCCceeEE-Ee
Q 028806 80 SPNSVDAL-LK 89 (203)
Q Consensus 80 ~~~~v~~~-~~ 89 (203)
....+.++ |.
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 45566666 54
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00014 Score=60.20 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=98.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-eEEEEEeeCCCEEEEecCCC-----eEEEEEcCCc-----c
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~-----~ 70 (203)
.|++.+..++.|+.+|.|.+++-. -+.+..++.+... |..+-...+.++|++.+.|. .+++|++... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478889999999999998888733 2344566666555 44444334446777766553 5899999632 1
Q ss_pred ccc---eeee---ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 71 DCS---DRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~---~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.++ ..+. +....++.++ .+.+-..+++|-.+|.|..+.-. ..-....+......+|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 0023456666 68888999999999999888522 111122222222348999999999887554
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
+.+-..|.+|.+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556678999887544
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=7e-05 Score=62.06 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
++|+|..-.|+.|-..|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|.+.
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799988889999999999999998877777777899999999999999999999999999999775
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=0.00079 Score=48.70 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=94.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
.+++.|+..+.+.-.|..+|.....-.. ..+|.+-+.- -|.+++.|...|.+++.+..+ +.....+.....-.+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 3567788888888999999887754332 3445444433 467899999999999999986 444444443022334444
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+++..|+.++.|+..+..|.++..++...+.... -..+-++.|-...|..+...|.+.-
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEE
Confidence 788999999999999999999999888877766532 3334566673344444444555433
No 325
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00097 Score=52.11 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=106.4
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce--
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~-- 74 (203)
++++|+++.+..+.. ++++.+.|..++...........+ ..+++.|++..++... .++.+.+.|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899987766544 689999999988887775543344 8899999999777665 6889999997532 2221
Q ss_pred ---eeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEe-CCC
Q 028806 75 ---RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDS 145 (203)
Q Consensus 75 ---~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~-~d~ 145 (203)
.+.. ... ...+ ++|+|.+++..... +.+...|..++..... ...... ....+..+|+|.++.+.. ..+
T Consensus 199 ~~~~~~~-~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 199 VGSLVGV-GTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred ccccccc-CCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 1221 222 3344 79999988776654 5899999888776655 333322 346789999999888774 447
Q ss_pred cEEEEeCCCcccC
Q 028806 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.+.+.|..+....
T Consensus 276 ~V~vid~~~~~v~ 288 (381)
T COG3391 276 TVSVIDGATDRVV 288 (381)
T ss_pred eEEEEeCCCCcee
Confidence 8888887775443
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.09 E-value=0.00061 Score=53.46 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=87.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.+|.+..+|..+++.+....... ...+. ..+..++.++.++.+..+|..+....+..-.. ......+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CCCcccC
Confidence 4566667788999999999998776543211 11222 24567777888999999998754332221111 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+.+++.++.+|.|+++|..+|+.+........ .+.+ ..+ .+..|+.++.+|.|+.+++
T Consensus 331 p~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1356788899999999999999998877754322 2322 222 2457888899999998865
No 327
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00017 Score=56.86 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=96.0
Q ss_pred cCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-------EEEEecCCCeEEEEEcCCccc-cceee
Q 028806 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (203)
Q Consensus 6 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~~~~-~~~~~ 76 (203)
+.++|+ .+.....|+-.|++.|+.+.....+.. |.-+.+.|+.. .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444443 445556788899999999888877665 66677777643 223455678899999985443 12211
Q ss_pred ec--c-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ + ......|.......+|++|+.+|.|++||--.......+++. +.+|..|..+.+|.+|+..+ +..|.+-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 21 0 123344444556678999999999999996322334446666 44899999999999987665 5566666653
No 328
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=4.6e-05 Score=62.39 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=76.0
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe---------cCCCeEEEEEcCCcccc-ceeeec
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG---------SQSGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~i~~wd~~~~~~~-~~~~~~ 78 (203)
++|.|...|+|.|+|+.++.....+-.|.+.|.++.|.....++-.+ +.-+.+.+-|++++... .+.+..
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 57889999999999999998888888899999999998665544322 12235667777753211 111222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
....+|+.+ .+..+.|++..-.+-.+-+||+++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 145688888 899999999999998899999854
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=4.3e-05 Score=61.69 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----ee
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FV 77 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~ 77 (203)
++..+++++.|+.-|.+++|+-..+.... ...+..+.+..+..+++..+++.|+..|.|.++-+......-.. +.
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 45678899999999999999977765432 22233455666778888888999999999999988653222111 12
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
..|...|+++ |++++..+++|...|.|.+-.+.+
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1257789999 999999999999999998876655
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=9e-05 Score=59.94 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=81.0
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
..|.--++...+.+++.|+.-|.+++|.-.. +.... ...+ ..+.+..+ .++...++++|+..|.|.++.+..+.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCc-hhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3444445566788999999999999998753 23222 2222 12222233 6889999999999999999988754321
Q ss_pred ---eeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 ---QPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ---~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..-..+. ...|++++|++++..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1112221 34899999999999999999999999988877
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=3e-05 Score=38.22 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++...+..|...|.++.|++.+..+++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999995
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=3.3e-05 Score=38.09 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.9
Q ss_pred ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+++..+..|.. .|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556666744 799999999999999999999999996
No 333
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00014 Score=60.64 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=100.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.|+....+..+|+.+.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++ -+.++.+.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 34566666667788889888776555443333454443 4678999999999999999974 578889998 8887765
Q ss_pred EEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 87 LLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ +-.|+.|++++. |..|+|||++..+.+..+..+.+ + .-+.|+|.- ..+++++..|...+-|.
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-P-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-c-hhhhhcccccceEEEEecccceeeccc
Confidence 5 668889998864 45689999998887777766644 2 346777743 45677777777777773
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.90 E-value=2.4e-06 Score=68.10 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=91.7
Q ss_pred Ccccc-cCCEEEEEc----CCCeEEEEEcCCC--eEE--EeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 1 MTFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQ--TRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp-~~~~l~~~~----~d~~i~vw~~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
++|++ |.+.||+|- .|..+.|||+.++ .+. ..+.. ......+++|..+.+++.+|.....+.++|++...
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 35655 455666663 3567999999875 111 11211 23345688898888888898888899999997322
Q ss_pred ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEE-ccCC-ceeeeeccCCC---CceEEEEEeCCCC-eEEEEe
Q 028806 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILPN-RIIQPIAEHSE---YPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d-~~~~-~~~~~~~~~~~---~~i~~i~~~~~~~-~l~~~~ 142 (203)
.....+ .+..+..+ ..| .++++++-. +|.|.+|| .+.- .++.++...+. ..+..++|.|... .+++..
T Consensus 188 ~~~~sv---nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 188 DSVSSV---NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred hhhhhh---hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 222222 23344455 566 566666544 99999999 3332 23333322211 1488999999653 444554
Q ss_pred -CCCcEEEEeCCC
Q 028806 143 -HDSMLKLWDLDD 154 (203)
Q Consensus 143 -~d~~i~iwd~~~ 154 (203)
..++|+++|+..
T Consensus 264 RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 264 RDSITIRLYDICV 276 (783)
T ss_pred cCcceEEEecccc
Confidence 567899998754
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=8.2e-05 Score=59.49 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
...+..+.|+|.-..+|++..+|.+.++.+. ..+ +.++.. +..+++ ++ |.|+|+.|++|-.||+|++.|++.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457789999999999999999999998886 333 344553 444555 88 999999999999999999999999887
Q ss_pred eeeeccCCCCceEEEEEeC
Q 028806 115 IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~ 133 (203)
+.........+|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663322233788888864
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0024 Score=53.27 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=95.2
Q ss_pred CEEEEEcCCC-----eEEEEEcCC------CeEE---Eee--cC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 8 MKLLGTSGDG-----TLSVCNLRK------NTVQ---TRS--EF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 8 ~~l~~~~~d~-----~i~vw~~~~------~~~~---~~~--~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|++.+.|+ .|+||++.. +.++ +.+ .. ...++.+++.+.+-..+|+|-.+|.|.++.-.-.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677765553 589999863 2233 111 11 3567899999999889999999999999853211
Q ss_pred c--ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 70 K--DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 70 ~--~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
. .....+......+|+.+ +..++..++.+..-..|.+|.+....+... +..+ +.+..|..+++....+++++ +.
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-Cc
Confidence 1 11111111146789999 666666644444445688999874333333 4444 55788888887655455544 45
Q ss_pred cEEEEeCCCcccCCC
Q 028806 146 MLKLWDLDDILKGSG 160 (203)
Q Consensus 146 ~i~iwd~~~~~~~~~ 160 (203)
.+.+|+.....+.-.
T Consensus 236 ~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFA 250 (933)
T ss_pred eEEEEcCCCcceeee
Confidence 799999876655433
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.88 E-value=0.002 Score=50.61 Aligned_cols=142 Identities=12% Similarity=0.041 Sum_probs=88.8
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc----------ceE-EEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----------ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----------~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+..+++++.++.|.-+|..+|+.+........ .+. .+.. .+..++.++.++.++.+|..+....+ .
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW-Q 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc-c
Confidence 55777778889999999999988876643220 000 1111 35567778889999999987644333 3
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
... . ..+.+- .- .+..++.++.++.|..+|..+|+.+........ .+ .+... .+..++.++.++.+..
T Consensus 146 ~~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 332 2 222221 11 245677788889999999999998877754311 10 11111 1234666777888888
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
+|..++..
T Consensus 220 ~d~~~G~~ 227 (394)
T PRK11138 220 VLMEQGQL 227 (394)
T ss_pred EEccCChh
Confidence 88877654
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.87 E-value=0.00053 Score=53.02 Aligned_cols=92 Identities=9% Similarity=0.069 Sum_probs=58.6
Q ss_pred cccCCEEEEEc---------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 4 AADAMKLLGTS---------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 4 sp~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|||+++++... ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|++++.... . ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~-~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-Q-ET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-E-EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCC-C-eE
Confidence 78999887742 24678999999986654333 356788899999999988875 578999987532 1 11
Q ss_pred eeeccC-----------------CCceeEE-EeeCCCEEEEEc
Q 028806 75 RFVGLS-----------------PNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 75 ~~~~~~-----------------~~~v~~~-~~~~~~~l~~~~ 99 (203)
.+..-. -..-..+ |+|++++|+...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 121100 1123456 899999888653
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.2e-05 Score=56.48 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=67.2
Q ss_pred ceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKL 149 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i 149 (203)
.+.+.. +...|..+ |+|..+ ++..++.+..|+|.|+++......+..+ . .+++++|.-+.. +|+.|-..|.|.|
T Consensus 186 sq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcceeEEeccCceEEE
Confidence 334455 67788999 898777 6778899999999999999999888888 4 799999998764 5667778999999
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||++....
T Consensus 263 yD~R~~~~ 270 (463)
T KOG1645|consen 263 YDMRQPEG 270 (463)
T ss_pred EEccCCCc
Confidence 99987653
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0062 Score=47.67 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=100.2
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~ 77 (203)
++++.++.+ +....++.|.+.|..+......+.... ....++++|++..++++.. ++++.+.|..+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 456777744 444456899999987766665554322 5678999999988877665 678888887643 3333333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceee-----eeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
. ...+ ..+ +.|+|+.++... .++.|.+.|........ ..... . .-..+.++|++.++.+.... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 3 3344 445 899999777766 67889999976654442 12222 1 34678999999977665543 588
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
...|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.76 E-value=0.0038 Score=53.93 Aligned_cols=149 Identities=11% Similarity=0.130 Sum_probs=92.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC----c---------
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----F--------- 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~--------- 69 (203)
|..+.+.|+.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+-.-.. .
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~ 154 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDER 154 (1265)
T ss_pred EecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccc
Confidence 4556777888888899998887765432 2223356799999999999998888877776643210 0
Q ss_pred ---------cccceeeec---------------------cCCCceeEE-EeeCCCEEEEE-----cCCCcEEEEEccCCc
Q 028806 70 ---------KDCSDRFVG---------------------LSPNSVDAL-LKLDEDRVITG-----SENGLISLVGILPNR 113 (203)
Q Consensus 70 ---------~~~~~~~~~---------------------~~~~~v~~~-~~~~~~~l~~~-----~~d~~i~~~d~~~~~ 113 (203)
++.-..|.+ .+... ..+ |--+|.++++. ...+.|+|||-+ |.
T Consensus 155 ~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~ 232 (1265)
T KOG1920|consen 155 KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA 232 (1265)
T ss_pred ccccceecccccceeeecchhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch
Confidence 011111211 00111 235 78899998873 233789999966 43
Q ss_pred eeeeeccCCCCceEEEEEeCCCCeEEEEe---CCCcEEEEeCCCc
Q 028806 114 IIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDI 155 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~iwd~~~~ 155 (203)
.-.+- ....+-=.+++|-|.|..+++.. .|+.|.+|.-.+.
T Consensus 233 Lns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 233 LNSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred hhccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 22211 11111235799999999988765 4567999875433
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.011 Score=45.08 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred CCEEEEEcC----------CCeEEEEEcCCC----eEEEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
..+|++|+. .|.|.++.+... ..+..+ ....++|++++-- ++. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 356776642 288999999873 122211 2346778888755 444 44443 4789999997543
Q ss_pred ccceeeeccCCC--ceeEEEeeCCCEEEEEcCCCcEEEEEccC-Cceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+..... ... .+.++ ...+++|++|.....+.++.... ...+..+ +......++++.+-+++..++.+..+|.
T Consensus 119 -~l~~~~~-~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 -TLLKKAF-YDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -SEEEEEE-E-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -cchhhhe-ecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 1222222 222 34444 44567999999888888875543 2323222 2222236888888877678899999999
Q ss_pred EEEEeCC
Q 028806 147 LKLWDLD 153 (203)
Q Consensus 147 i~iwd~~ 153 (203)
|.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999874
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.0016 Score=53.62 Aligned_cols=144 Identities=14% Similarity=0.057 Sum_probs=79.9
Q ss_pred cccccCCEEEEEc------CCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC------------CeE
Q 028806 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (203)
Q Consensus 2 ~~sp~~~~l~~~~------~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (203)
++||+|+.+++.. .|. .|.+++... .. ..+... .....-.|+|+|..+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789999887665 233 555556432 22 223222 237788999998877766432 223
Q ss_pred EEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE---EEccCCceee----eeccCCCCceEEEEEeC
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRIIQ----PIAEHSEYPIESLALSH 133 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~----~~~~~~~~~i~~i~~~~ 133 (203)
.+.++.. +.... . ....|..+ |+|||..++... ++.|++ -....|.... .+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3333321 11111 2 34568889 999999988766 467766 3333443111 12221122357899999
Q ss_pred CCCeEEEEeCCCc--EEEEeCCCc
Q 028806 134 DRKFLGSISHDSM--LKLWDLDDI 155 (203)
Q Consensus 134 ~~~~l~~~~~d~~--i~iwd~~~~ 155 (203)
++.++ ++..++. +...++...
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCc
Confidence 98855 4444333 444445433
No 344
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.69 E-value=0.00057 Score=53.53 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=88.3
Q ss_pred EEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEc
Q 028806 21 VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 21 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
+|+..+......+....-++..+.|+|.|.+|++.... .|.+|.-.... .+..+. ...|..+ |+|.+++|.+=.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-~l~~~~---~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-KLVRFR---HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh-heeeee---cCCceecccCcccceeeeec
Confidence 44444433333444455678899999999999987765 48999876443 343443 3467888 999999998754
Q ss_pred CC---------------CcEEEEEccCCceeeeeccCCCCc--eE-EEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 100 EN---------------GLISLVGILPNRIIQPIAEHSEYP--IE-SLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 100 ~d---------------~~i~~~d~~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+.+||+.+|.++..+..... + .+ -+.|+.+..|+|-. ....++|+++
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 33 2489999999999988876644 3 34 57899998887754 3457999996
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=8.3e-05 Score=61.98 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=92.5
Q ss_pred EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC-C-cEEEE
Q 028806 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-G-LISLV 107 (203)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~-~i~~~ 107 (203)
..+..+....+|++|+.+.++|++|+..|.|++|++.+ +.......+ |..+++.+ -+.+|..+++.+.- . ...+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence 45566778899999999999999999999999999974 667777888 99999988 67788887765543 2 46789
Q ss_pred EccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 108 GILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 108 d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++.+ +....++. .-.++.|+..-+.-+.|+......+||+.+..+-+.
T Consensus 1173 ~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred ccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 9764 33444443 346788887665556666556789999988865543
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0058 Score=46.20 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=81.7
Q ss_pred ccccCCEEEEEcC-----------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCC-c
Q 028806 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY-F 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~-~ 69 (203)
..|+|.+.+.... -|.|+.++. .+..+..+..+-...+.|+|+||++.|+.+.. .+.|..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566766655433 133444443 45555555555566788999999988887765 47888887752 1
Q ss_pred ccc----ceeeeccCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEEe
Q 028806 70 KDC----SDRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (203)
Q Consensus 70 ~~~----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~ 142 (203)
... ...+.....+..-.+ ...+|.+.+++...| .|.+|+.. |+.+..+..... .+++++|- |+.+.|+..+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 111 011111022333333 566777776555554 89999987 888888877743 57788885 4455554443
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.62 E-value=0.009 Score=47.23 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=83.3
Q ss_pred cccccCCEEEEE-cCC----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----------CeEEEEE
Q 028806 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd 65 (203)
.+||+|++||.+ +.. ..|+++|+.+++.+...-. ......+.|.++++.|+....+ ..|++|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 579999998875 222 4599999999977643211 1222349999998887665432 2477788
Q ss_pred cCCcccc-ceeeeccCCCce--eEE-EeeCCCEEEEEcC---C-CcEEEEEccCC----ceeeeeccCCCCceEEEEEeC
Q 028806 66 WGYFKDC-SDRFVGLSPNSV--DAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~v--~~~-~~~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+.+.... ...+.. ..... ..+ .++++++++.... + ..+.+.++..+ .....+..... .+....-+.
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~ 286 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHH 286 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEE
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEcc
Confidence 7653222 223333 33333 344 6899999875433 2 35778887764 22233333223 333333233
Q ss_pred CCCeEEEEe---CCCcEEEEeCCCccc
Q 028806 134 DRKFLGSIS---HDSMLKLWDLDDILK 157 (203)
Q Consensus 134 ~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (203)
.+.+++... ..+.|...++.....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred CCEEEEeeCCCCCCcEEEEeccccccc
Confidence 444444332 345677777766554
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.58 E-value=0.0022 Score=55.35 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec---CCCeEEEEEcCCc--c
Q 028806 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYF--K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~--~ 70 (203)
|.|--||+++|+. .....|+|||-. +.+-..-......-.+++|-|.|..+++.. .++.|.+|.-+.. +
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 3577789988873 233789999976 444333333344456799999999988754 3557888875411 1
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEE---EcCCCcEEEEEccCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVIT---GSENGLISLVGILPN 112 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~---~~~d~~i~~~d~~~~ 112 (203)
...-.+.. ....+..+ |+.++..|+. ......|++|-+.+.
T Consensus 280 ~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11112222 33447888 9999998887 344455999987654
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.0058 Score=44.42 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
|.+++.|...|.+++.+..+|...+.+.....-=......+++..+..++.|++++..|..+. .++-..+. ......+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskc-gG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKC-GGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEeccc-CCceecc
Confidence 567888999999999999999777666543322223345678999999999999999998753 44444333 2211111
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
. ..|-...|+.+...|.|.--...+
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCC
Confidence 1 355334455555555554444333
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00035 Score=58.18 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=80.9
Q ss_pred EEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 41 TSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
+-..|+|...+|++++. .|.|.||-= + +++-.... .+-.++++ |+|..-.|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-t-GEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-T-GEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-C-CCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 34579998888877653 578888843 2 33333222 12234556 8999888888888999999998776665
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.....| ..+|..+.|+|+|..|+++..-|.+.+|....
T Consensus 95 tv~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 555566 45899999999999999999999999998763
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.022 Score=42.37 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--------
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------- 74 (203)
...++.|+.|+.+| |.+++... ........ ...|..+...|.-+.|++-+ |+.++++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678899998888 99999833 22222222 23499999999877777665 49999999864221110
Q ss_pred ------eeeccCCCceeEEEe----eCCCEEEEEcCCCcEEEEEccCC-----ceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 75 ------RFVGLSPNSVDALLK----LDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 75 ------~~~~~~~~~v~~~~~----~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.+. ....+.. |. +.+...++......|.+|..... +....+... + .+.+++|. ++.|+
T Consensus 80 ~~~~~~~~~--~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLP--ETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccc--ccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEE
Confidence 111 1111111 23 34444444555558888877542 455566555 3 68899998 55677
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028806 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
.+. .+...+.|+.++...
T Consensus 153 v~~-~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 153 VGT-SKGFYLIDLNTGSPS 170 (275)
T ss_pred EEe-CCceEEEecCCCCce
Confidence 766 445888898866544
No 352
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00083 Score=52.00 Aligned_cols=146 Identities=13% Similarity=0.093 Sum_probs=100.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCC--C-eEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc-C
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL-S 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~-~ 80 (203)
..+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.+. ..+..++.. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 456889999999999998543 2 344555678888999999999999999777 999999999742 333222220 1
Q ss_pred CCceeEEEeeCC----CEEEEEcCCCcEEEEEccCCc-e-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDALLKLDE----DRVITGSENGLISLVGILPNR-I-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~-~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.+.. +...| ...++.-.++.+.++|-.... + ...-..|.. +|.++.++|-+..+++....|.|.-|....
T Consensus 98 Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeeccccceeEeecCCC
Confidence 222222 22233 222233457899999976433 2 233344544 999999999999999999999999999874
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.41 E-value=0.027 Score=44.86 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------c--ccceee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~--~~~~~~ 76 (203)
|.+|+..+. +.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+++++.... + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 555666554 48999999999999988753 48999999999999988755 6778776421 0 022222
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. -...|.+. |.-+ .++..+.. .|+. +-.|+.- ++..- +.+++-+.+.|..+.+.....++.|..+.+..
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 21 13455555 5444 45544444 5554 4444332 22222 23677788888878888888888888887643
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.013 Score=36.92 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.|++|+.|..|++|.-. ..+..+.. ...|+++.-... ..|+.+..+|+|-+|+-. .+.++ .+. ...+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR-iKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR-IKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-ecc--CCCeEEE
Confidence 579999999999999844 45566654 456777776654 678999999999999863 24443 333 3345666
Q ss_pred --EeeCC---CEEEEEcCCCcEE
Q 028806 88 --LKLDE---DRVITGSENGLIS 105 (203)
Q Consensus 88 --~~~~~---~~l~~~~~d~~i~ 105 (203)
+..++ .-|++|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 33332 3578888888763
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.36 E-value=0.0086 Score=49.44 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=61.4
Q ss_pred cceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC---------
Q 028806 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------- 101 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------- 101 (203)
..+.+.+++|+|..++... .+..-.+|-....+.. ..+.. .. ..... |+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999999887654 2443344433222333 33332 22 35555 89998887776532
Q ss_pred ---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 102 ---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 102 ---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
+.+.+.++..+.... .. ...|..+.|+|||..|+... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333443333322 11 22699999999999888766 467766
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.34 E-value=0.025 Score=43.18 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~ 83 (203)
+.+|+++.. +.|.+|++...+ ...... .....+.++... ++++++|.....+.++.+......+..+.. .....
T Consensus 98 ~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 334555444 789999998776 443222 123355555544 669999998888888866532332333322 02334
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC-------Cc--eeeeeccCCCCceEEE---EEeC--CCC------eEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------NR--IIQPIAEHSEYPIESL---ALSH--DRK------FLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-------~~--~~~~~~~~~~~~i~~i---~~~~--~~~------~l~~~~ 142 (203)
+.++ +-++++.++.+..+|.|.++.... +. ......-|.+..|+++ .+.| .+. .++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5666 555667999999999999987752 22 2222223333367777 5555 222 377888
Q ss_pred CCCcEEEE
Q 028806 143 HDSMLKLW 150 (203)
Q Consensus 143 ~d~~i~iw 150 (203)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89998743
No 357
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.34 E-value=0.016 Score=47.76 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-eeeeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEcc---
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL--- 110 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~--- 110 (203)
..+.-+.-+.-++..++-+....+.|||........ ..+ . ....|..+ | .|+++.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344444445545555555556789999997432111 122 3 46788999 6 6899999999999999988642
Q ss_pred --C----Cceeee--eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 111 --P----NRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 111 --~----~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ..++.. +..++..+|....|.++|..++.+ ++.+.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 112222 344444589999999999776654 357888763
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0023 Score=54.69 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC--C
Q 028806 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~ 124 (203)
.+..++.|+..|.+...|+...-.+...-.. ..++|+++ |+.+|..++.|-.+|.|.+||+..+++++.+..+.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888899998888632111122222 46789999 899999999999999999999999988888766532 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|..+.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3444455556667777777775 5543
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.02 Score=42.30 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=87.9
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEE-----------
Q 028806 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY----------- 64 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w----------- 64 (203)
.|||||.+|+..-. -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+.. -|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 48999999887643 378999998854 445677777777889999999999987643 23322
Q ss_pred ---------EcCCcccccee--eec-cCCCceeEE-EeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCC---
Q 028806 65 ---------SWGYFKDCSDR--FVG-LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE--- 123 (203)
Q Consensus 65 ---------d~~~~~~~~~~--~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~--- 123 (203)
|..+ +..+++ +.. .+...++.+ ..++|+.++-+-..|. -.+=-...++++.-+....+
T Consensus 198 sMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 2111 122111 110 022334555 4555555444332221 11111223444433332211
Q ss_pred ---CceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCC
Q 028806 124 ---YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 124 ---~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.-|-+|+.+.+..+++..+ ..+...+||..++....
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 1366778776666655444 56678999999887553
No 360
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.23 E-value=0.049 Score=44.17 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=87.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----eE-EEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LT-SVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC 72 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~ 72 (203)
..++.++.++.|+.+|..+++.+......... +. ...+. + ..++.++ .++.++.+|..+....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777888999999999999988776543221 11 11222 2 3444443 3578888888754333
Q ss_pred ceeeeccCC-------------------CceeE-E-EeeCCCEEEEEcCCC------------------cEEEEEccCCc
Q 028806 73 SDRFVGLSP-------------------NSVDA-L-LKLDEDRVITGSENG------------------LISLVGILPNR 113 (203)
Q Consensus 73 ~~~~~~~~~-------------------~~v~~-~-~~~~~~~l~~~~~d~------------------~i~~~d~~~~~ 113 (203)
. .+..... ..+++ . +.+.+..++.++.++ .|.-+|+.+|+
T Consensus 189 W-~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 W-RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred e-EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 3 2221000 11111 1 344567777777654 68889999999
Q ss_pred eeeeeccCCCCceE------EEEEe----CCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 114 IIQPIAEHSEYPIE------SLALS----HDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 114 ~~~~~~~~~~~~i~------~i~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..++.... ... ...+. -++. .++.++.+|.+..+|.++++..
T Consensus 268 ~~W~~~~~~~-~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 268 VKWFYQTTPH-DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEeeCCCC-CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 8877643211 111 11111 1333 5677788999999999998754
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.23 E-value=8.6e-05 Score=59.60 Aligned_cols=140 Identities=12% Similarity=0.216 Sum_probs=91.4
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEee-CCCEEEEecC----CCeEEEEEcCCcc-ccce--eee
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYFK-DCSD--RFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~-~~~~--~~~ 77 (203)
-.++.|..+|.|.+-..+...- .....++..+.++++|++ |.+.|+.|-. +..+.+||+...- .+.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 4567888889999888775322 234456677899999998 5667776643 5689999996420 1111 111
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEe
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd 151 (203)
+.......++ |-.+.+++++|...+.+.++|++.. .....+.. . .+..+...| .+.|+++-. |+.|.+||
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 1011223344 6677888889999999999999832 22222222 2 356677788 777887766 99999999
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.22 E-value=0.049 Score=42.83 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=86.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEe--ecC------CccceEEEEEee-----CC---CEEEEecCCCeEEEEEcCC-
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTR--SEF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~~wd~~~- 68 (203)
|-.++|.|..+|.+.|.|++.+..+.. +.. ....++++.|.. |+ -.+++|...|.+.+|.+.-
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 456899999999999999998877654 222 234678888873 22 3678888899999998852
Q ss_pred c-cccce----eeeccCCCceeEE--EeeC-C-------------------CEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 69 F-KDCSD----RFVGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 69 ~-~~~~~----~~~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
. +.... .... +..++..+ ++.+ | +.++..+.+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 1 11111 1112 44555555 3221 1 23445555667999998776655444322
Q ss_pred CCCceEEEEEe-----CCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~~~~i~~i~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
...+..+.+- ..+..|++-..+|.|++|.+...++...
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 1133344553 3556788888999999999988876543
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.19 E-value=0.036 Score=44.91 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc------ceE--EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+..++.++.++.|.-+|..+++.+........ .+. .+... ++..++.++.++.|+.+|..+. +.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG-~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG-KQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC-CEeeeecC
Confidence 34566777789999999999988776643221 010 11111 2267778888999999999764 44333332
Q ss_pred cCCCc--eeEE-Eee--CCCEEEEEc---------CCCcEEEEEccCCceeeeeccCCC-------------------Cc
Q 028806 79 LSPNS--VDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (203)
Q Consensus 79 ~~~~~--v~~~-~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~ 125 (203)
.... -..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 1110 0111 111 124455543 357888999999998877644211 01
Q ss_pred e-EEEEEeCCCCeEEEEeCCC------------------cEEEEeCCCcccC
Q 028806 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (203)
Q Consensus 126 i-~~i~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (203)
+ ...++.+.+..++.++.++ .|.-+|+.+++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1345555566777776554 6888888887754
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.002 Score=54.95 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=68.0
Q ss_pred CEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
..++.|+..|.+-..|..++ .....-+...++|++++|+.+|..++.|-.+|.|.+||+.. +..++.+.. +..+...
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccce
Confidence 35677777788877776653 11112223457899999999999999999999999999975 466777766 6666665
Q ss_pred E----EeeCCCEEEEEcCCCc
Q 028806 87 L----LKLDEDRVITGSENGL 103 (203)
Q Consensus 87 ~----~~~~~~~l~~~~~d~~ 103 (203)
+ +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 5 3455667888877776
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.06 E-value=0.069 Score=39.16 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=86.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-----
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----- 73 (203)
|+|+|+.+ ++++....+.|..++.. |+.+..+.-. ..-.-.|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 57899866 55667778888888864 6777666532 3457788888888777777678999999984322211
Q ss_pred eeee--c--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---Cceeee-----ec---cCCCCceEEEEEeCCCC-
Q 028806 74 DRFV--G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQP-----IA---EHSEYPIESLALSHDRK- 136 (203)
Q Consensus 74 ~~~~--~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~-----~~---~~~~~~i~~i~~~~~~~- 136 (203)
..+. . .+...+-.+ |.|.++.++.+-......+|.+.. ...+.. +. .. ...+.+++++|...
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTTE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCCe
Confidence 1121 1 023346777 899888888888777777777654 211111 11 11 12578899999654
Q ss_pred eEEEEeCCCcEEEEeC
Q 028806 137 FLGSISHDSMLKLWDL 152 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~ 152 (203)
+++....+..|..+|.
T Consensus 185 lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 185 LLILSDESRLLLELDR 200 (248)
T ss_dssp EEEEETTTTEEEEE-T
T ss_pred EEEEECCCCeEEEECC
Confidence 4555556777777774
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.06 E-value=0.033 Score=45.16 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=67.8
Q ss_pred cceEEEEEeeCC----CEEEEecCCCeEEEEEcCCccc----cceeeec-----cCCCceeEEEeeCCCEEEEEcCCCcE
Q 028806 38 EELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKD----CSDRFVG-----LSPNSVDALLKLDEDRVITGSENGLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d~~i 104 (203)
..|..+.|.|-+ ..|...-....|.||.+..... .+..-.. ...-+-.|+|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458899999842 2344445567899999853211 1111111 00123345699998888876655443
Q ss_pred EEEEccCC--ceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 105 SLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 105 ~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+++++.. +...-+... + -|.|.+|.+||+.|+++- ..=+-++||-
T Consensus 137 V~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 46666543 233334443 3 799999999998877654 3335688874
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.05 E-value=0.06 Score=41.76 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=71.1
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+.+.++.......|+..|+.+. +....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 47889976655543 456888888888776544433233335667788888776655568888888753 22223332
Q ss_pred cCCCceeEE-E--eeCCCEEEEEc----------------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
....+... | +.++..++-.- -.+.|...|+.+|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 44555544221 1234666778888776666654 3 688899999
Q ss_pred CCCeEEEEe
Q 028806 134 DRKFLGSIS 142 (203)
Q Consensus 134 ~~~~l~~~~ 142 (203)
....+++-|
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 766555544
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.066 Score=42.40 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
++..|+.||++++||.-..+|.+.+...
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 7999999999999999888899887753
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.093 Score=40.03 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=88.8
Q ss_pred cccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCcc-c------eEEEEEeeCCCEEEEec--CCCeEE
Q 028806 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-E------LTSVVLMKNGRKVVCGS--QSGTVL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~~~--~d~~i~ 62 (203)
..||+++.++++. +.-.|.+||..+-.+...+.-... + ...++++.+++++++.. -...|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 4689999887653 234689999999877765543222 1 12356677777776643 345677
Q ss_pred EEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEcc-CCceeee----eccCCCCceEEEEEeCCCCe
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRIIQP----IAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~----~~~~~~~~i~~i~~~~~~~~ 137 (203)
|.|+.. ++.+..+.. ..+..++-.....+.+.|.||.+....+. .|+.... +....+..+..-++...+..
T Consensus 122 VVDl~~-~kvv~ei~~---PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT---PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEETTT-TEEEEEEEG---TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEECCC-CceeeeecC---CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 888763 444444432 22333332123568889999999988887 4554422 11111212223455556666
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
++..+.+|.|+-.|+....
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEBTTSEEEEEEETTSS
T ss_pred EEEEecCCEEEEEeccCCc
Confidence 6667889999888886654
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.0033 Score=44.60 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEE-EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-Cc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTS-VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~ 83 (203)
+..+++|+.+|.|.+|..... ............|-+ +.-..++.+..+++.+|.|+.|.+.. ...+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 356788899999999987631 111111111122222 22233556788899999999999863 333333222 33 22
Q ss_pred eeEE-EeeCCCEEEEE--cCCCcEEEEEc
Q 028806 84 VDAL-LKLDEDRVITG--SENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~d~~i~~~d~ 109 (203)
...+ ....+..+.++ +.+..++.|++
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcch
Confidence 2222 33344444444 44444555544
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.01 E-value=0.01 Score=50.25 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred EEEEEcCCCeEEEEEcCCC--eEEEe-ec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 9 KLLGTSGDGTLSVCNLRKN--TVQTR-SE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~--~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
..+.|-.++.|..||.+-. +++.. .. .......|++-+.+| +||+|+.+|.|++||-. +......+.+ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC-CCCC
Confidence 3456667788999998752 23321 11 123456777766665 78899999999999953 4455556666 6789
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
|..+ .+.+|++|++.|... |.|++.
T Consensus 621 I~~iDvt~DGkwilaTc~ty-LlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKTY-LLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecce-EEEEEE
Confidence 9999 899999998877664 445554
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.084 Score=39.23 Aligned_cols=154 Identities=10% Similarity=0.140 Sum_probs=96.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce----e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----R 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----~ 75 (203)
++|+|+.+.|++......-.|+-...|+.+.++.-. -.-...|.+..++.++++--.++.++++.+......+. .
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999999988877777777776778887776521 12244577777888877777788888887754322111 1
Q ss_pred e-----eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-e--eeeeccCCC------CceEEEEEeCCC-CeEE
Q 028806 76 F-----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-I--IQPIAEHSE------YPIESLALSHDR-KFLG 139 (203)
Q Consensus 76 ~-----~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~--~~~~~~~~~------~~i~~i~~~~~~-~~l~ 139 (203)
+ .. .....-.+ |.|....++.+-...-+.||....+. . ......++. ..|.++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1 11 12345566 88988888888888777777665322 1 111111110 147778888754 4455
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
-+..++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5556677776666544
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.069 Score=39.58 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=83.1
Q ss_pred CcccccCC-EEEEEcCCCe-EEEEEcCCCeEEEeecCCccc--eEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccc
Q 028806 1 MTFAADAM-KLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~ 71 (203)
|+|+|-.. -++.+-+-|+ ..++|..+.+...++...+.+ .-.-.|+|||.+|+..-.| |.|-+||.+..-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 35566543 3445544444 457777665544443322211 1223689999999876443 7899999975444
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC------C------------CcEEEEEccCCceeeeeccCC---CCceEEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------N------------GLISLVGILPNRIIQPIAEHS---EYPIESL 129 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------d------------~~i~~~d~~~~~~~~~~~~~~---~~~i~~i 129 (203)
.+-.+.. |.-....+ +.+||+.++.+.. + -.+.+.|..+|+.+....... .-.|..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 4555665 55555566 8999999987654 1 124445545565543332210 1268888
Q ss_pred EEeCCCCeEEEEeC
Q 028806 130 ALSHDRKFLGSISH 143 (203)
Q Consensus 130 ~~~~~~~~l~~~~~ 143 (203)
...+||+.++.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 88888877665543
No 374
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.98 E-value=0.092 Score=40.95 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=71.3
Q ss_pred CcccccCCEEEEEc-----------CCC-eEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEE
Q 028806 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 64 (203)
|+|.++|+++++-. ..+ .|.++.-.. ++. ...+...-.....+++.+++ +++ +......++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEe
Confidence 57889999877743 223 676665432 321 22332223456789998888 444 4444333333
Q ss_pred EcCCccc---cce----eeeccC----CCceeEE-EeeCCCEEEEEcCC-------------------CcEEEEEccCCc
Q 028806 65 SWGYFKD---CSD----RFVGLS----PNSVDAL-LKLDEDRVITGSEN-------------------GLISLVGILPNR 113 (203)
Q Consensus 65 d~~~~~~---~~~----~~~~~~----~~~v~~~-~~~~~~~l~~~~~d-------------------~~i~~~d~~~~~ 113 (203)
|....+. ..+ .+.. . ......+ +.|+|.+.++.+.. +.|..++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 5432110 111 1211 1 1234456 78998776654421 345555555443
Q ss_pred eeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 114 IIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.. .+..... ....++|+|+|+++++-.
T Consensus 176 ~e-~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 LR-VVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EE-EEecCcC-CCccceECCCCCEEEEcc
Confidence 32 2322212 457899999998876644
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.93 E-value=0.11 Score=39.54 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=40.8
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.|.++|+.+++.+..+... . ++.+|..+.+.. +|++.+ .++.|.+||..++....
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-H-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-E-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEEECCCCeEEEEEeCC-C-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 3778888888888888754 2 688999999775 565544 57899999999987654
No 376
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.048 Score=43.60 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=89.9
Q ss_pred cCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC--------CEEEEecCCCeEEEEEcCCccccceee
Q 028806 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+..+|+ .|.....++-.|+..|+.+.....|..- -+.|.|.. ..|+ |-.+..|.-.|.+..+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 344443 3445567888888888888777766554 46677643 2344 4445556666666544333322
Q ss_pred ec--c-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. + ......+.......+|++++..|.|++||.-.-.....+++..+ +|..+..+.+|.+|++.| ...|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 21 0 12233344455667999999999999999543334444555534 899999999999887766 4577777765
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
-
T Consensus 633 i 633 (776)
T COG5167 633 I 633 (776)
T ss_pred c
Confidence 3
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.91 E-value=0.098 Score=38.38 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=77.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC------eEEEeec-----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-- 68 (203)
++.-++.++++.-+++.+.++.+... .....+. .+...+-.++|.|.++.|+.+-...-..+|.+..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 34445666666666889998888421 1111121 2445689999999888888777766666776653
Q ss_pred ccccceee-----e--ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------CceEEEEE
Q 028806 69 FKDCSDRF-----V--GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLAL 131 (203)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------~~i~~i~~ 131 (203)
....+... . ......+..+ ++|. +++++.+.....|..+| ..|+.+..+....+ ..--.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0023346677 7775 56666777788888899 66777655543321 14678999
Q ss_pred eCCCCeEEEEeCCCcEEEE
Q 028806 132 SHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (203)
.++|+..++ +.-+..++|
T Consensus 230 d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -TT--EEEE-ETTTEEEEE
T ss_pred CCCCCEEEE-cCCceEEEe
Confidence 999865554 455555554
No 378
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.88 E-value=0.12 Score=39.06 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=71.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----eec
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~ 78 (203)
-+++|++++++..-..+.-|+.-...-...-.....+|..+.|.|++.+.+.+ ..|.|++=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46789988888775556677754321222222345789999999998776654 7788887762211121111 111
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
....+..+ +.+++...++|+ .|.+ +.....|+.-+..+... ...++.|.|.+..+-+ ..+.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 22335666 777766666554 4544 45555666554443311 2257888887664444 44568877655
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.87 E-value=0.0055 Score=32.39 Aligned_cols=28 Identities=7% Similarity=0.198 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+++|+|...+||.+..+|.|.++.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 6999999999999999999999999998
No 380
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.83 E-value=0.07 Score=41.98 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=71.5
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc------------------------------------------ceee
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC------------------------------------------SDRF 76 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------------------------------------------~~~~ 76 (203)
.|+.+.|.+...-|+++...|.|-+|.+...+.. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677888888788888888888888766421100 0001
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee--cc-----CCCCceEEEEEeC-----CC---CeEEEE
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI--AE-----HSEYPIESLALSH-----DR---KFLGSI 141 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~-----~~~~~i~~i~~~~-----~~---~~l~~~ 141 (203)
.. ..++|+++...+=.+++.|..+|.+.|.|+|....+..- .. .....|+++.|.. |+ -.|++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 12 345677775556778999999999999999876655442 22 1122577888863 33 357788
Q ss_pred eCCCcEEEEeCC
Q 028806 142 SHDSMLKLWDLD 153 (203)
Q Consensus 142 ~~d~~i~iwd~~ 153 (203)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999884
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.11 Score=37.42 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=74.1
Q ss_pred ccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcc--
Q 028806 3 FAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFK-- 70 (203)
Q Consensus 3 ~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~-- 70 (203)
.+|+|++.+-...| |.++.|-... .+..+...-..-+.++|+.+.+.++... .+-+|.-||.....
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 47888885433222 3444444321 1111222223345788998887776554 46677778743211
Q ss_pred ----ccceeeecc--CCCc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 71 ----DCSDRFVGL--SPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 71 ----~~~~~~~~~--~~~~-v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
..+..+... .... .-.+ ...+|++.++.-..++|...|+.+|+.+.++...+. .|++++|--
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecC
Confidence 111111110 0011 1112 355677788888888999999999999999988866 899999954
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.74 E-value=0.0071 Score=31.96 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.3
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
...|..++|+|...+++.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.73 E-value=0.14 Score=37.71 Aligned_cols=139 Identities=16% Similarity=0.073 Sum_probs=80.2
Q ss_pred cccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE-cCCccccceeee
Q 028806 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~~ 77 (203)
++|++++.++... ....|+++..... ....+. ...+....|++++...+....+...+++. ..........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998776655 3345555554332 222222 23678889999977766666566666663 221111111222
Q ss_pred ccCC-CceeEE-EeeCCCEEEEEc---CCCcEEEEEcc---CC------ceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 78 GLSP-NSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 78 ~~~~-~~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~---~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
.... ..|..+ ++|+|..++... .++.|.+--+. .+ ..+...... ...+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCC
Confidence 1011 278889 999999988766 24667766543 23 111222222 226899999999987776654
Q ss_pred C
Q 028806 144 D 144 (203)
Q Consensus 144 d 144 (203)
.
T Consensus 186 ~ 186 (253)
T PF10647_consen 186 A 186 (253)
T ss_pred C
Confidence 3
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.72 E-value=0.083 Score=43.62 Aligned_cols=144 Identities=8% Similarity=0.065 Sum_probs=72.4
Q ss_pred cCCEEEEEcCCC-----eEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCC-------------------
Q 028806 6 DAMKLLGTSGDG-----TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (203)
Q Consensus 6 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (203)
+++..+.|+.++ ++..||..+..-.. .+.........+ .-++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456667776643 47788887653321 222111111112 23677777776542
Q ss_pred ----eEEEEEcCCccccceeeeccCCCce-eEEEeeCCCEEEEEcCC------CcEEEEEccC-Ccee--eeeccCCCCc
Q 028806 60 ----TVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSEN------GLISLVGILP-NRII--QPIAEHSEYP 125 (203)
Q Consensus 60 ----~i~~wd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~--~~~~~~~~~~ 125 (203)
.+..||..+ ..+..+........ .++..-++.+.+.|+.+ ..+..||..+ .+-. ..+..... .
T Consensus 429 ~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVN--NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCC--CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 466777653 22322221001111 12234466777777653 2367899886 4432 33332211 1
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028806 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
...+.+ ++...++|+.++ .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222222 778888888887 66777766543
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.57 E-value=0.11 Score=40.29 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=74.0
Q ss_pred CcccccCCEEEEE--cCC---CeEEEEEcCCCeEEEeecC-Cccc---eEEEEEe-eCCC-EEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSEF-SEEE---LTSVVLM-KNGR-KVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d---~~i~vw~~~~~~~~~~~~~-~~~~---v~~~~~~-~~~~-~l~~~~~d~~i~~wd~~~~ 69 (203)
+.|.++++.|+.. .++ ..+.++|..++.....++. .... .....|. +++. +|.....+|.-.+|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3577888744332 222 2356667766533222211 1111 2244444 5554 4445556776666555444
Q ss_pred cccceeeeccCCCceeEE--EeeCCCEEEE-EcC----CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVIT-GSE----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~~-~~~----d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+.....+.. ....|..+ ++++++.|+. +.. ...|...++..+.....+..... ....+.|+|++++++..+
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 444556665 56677666 6888777664 443 23455555552345555655533 225899999999887544
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.51 E-value=0.31 Score=40.06 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028806 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 122 (203)
.+.+++.++.+|.++.+|.++|+.+...+...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 55677778889999999999999998887653
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.47 E-value=0.13 Score=40.71 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=66.5
Q ss_pred EEEEEeeCCCEEEEe-cCC----CeEEEEEcCCccccce-eeeccCCCceeEE-EeeCCCEEEEEcCCC-----------
Q 028806 41 TSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENG----------- 102 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~-~~d----~~i~~wd~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----------- 102 (203)
....++|++++++.+ +.. ..++++|+.+. ..+. .+.. . ....+ |.++++.|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~--~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN--P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE--E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc--c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 356788999988754 233 36999999864 3332 2222 1 11226 899988877654322
Q ss_pred cEEEEEccCCcee--eeeccCCCCc-eEEEEEeCCCCeEEEEe---CC-CcEEEEeCCCc
Q 028806 103 LISLVGILPNRII--QPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (203)
Q Consensus 103 ~i~~~d~~~~~~~--~~~~~~~~~~-i~~i~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (203)
.|+.|.+.+.... ..+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3777777765432 3344432222 56788999999977544 23 45788888764
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.3 Score=37.08 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=78.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
.|.++...| .+--..+.|.-|+..++... .+. ....+.++..-..+..|+++.. -+.+++.... ..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~-~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTG-GKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCC-ceeEEecccc
Confidence 356666644 34445677888887765432 222 2233445544444455555543 3555565432 22122211
Q ss_pred --cCCCceeEE-EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-
Q 028806 79 --LSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH- 143 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~- 143 (203)
........+ ..|+|.+.+.... -|.|+.++. .+..+..+..+-. .-+.|+||||++.|+.+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCC
Confidence 011233444 6788877665333 133444443 4566655555322 3468999999988776664
Q ss_pred CCcEEEEeCCC
Q 028806 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|.-|++..
T Consensus 184 ~~~i~r~~~d~ 194 (307)
T COG3386 184 ANRIHRYDLDP 194 (307)
T ss_pred CCeEEEEecCc
Confidence 47888888763
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.35 E-value=0.31 Score=40.33 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++..++.|+.+ ..+..||..++.-. .+..- ..+.......-++...+.|+.++ .+..||..+ ..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~--~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD--DKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC--CeE
Confidence 34555666643 34677887765432 11111 11111122233677777777653 478888763 233
Q ss_pred eeeeccCCCcee--EEEeeCCCEEEEEcCCC-----------------------cEEEEEccCCceeeeeccCCCCceEE
Q 028806 74 DRFVGLSPNSVD--ALLKLDEDRVITGSENG-----------------------LISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 74 ~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
..+.. -..+.. ++..-++.+.+.|+.++ .+..||+.+.+-...-..... ....
T Consensus 380 ~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~ 457 (557)
T PHA02713 380 KMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRP 457 (557)
T ss_pred EECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-cccC
Confidence 33222 111111 12344677777776542 467788776543221111111 1111
Q ss_pred EEEeCCCCeEEEEeCC------CcEEEEeCCC
Q 028806 129 LALSHDRKFLGSISHD------SMLKLWDLDD 154 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (203)
.+..-++...+.|+.+ ..+..||..+
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1222356666666643 2356777765
No 390
>PHA03098 kelch-like protein; Provisional
Probab=96.29 E-value=0.32 Score=39.96 Aligned_cols=142 Identities=12% Similarity=0.017 Sum_probs=67.9
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~ 72 (203)
+++.++.|+.+ ..+..||..+++-.. .+....... ++ ..-++..++.|+.. ..+..||..+ ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t--~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNT--NK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCC--Ce
Confidence 45566666654 346777876653321 111111111 12 22356666776632 3578888753 22
Q ss_pred ceeeeccCCCc--eeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEEE
Q 028806 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
+..... ...+ -.++...++..++.|+.. ..+.+||+.+++-... +... ......+. .++..++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEE
Confidence 322221 1111 112234456666666542 2378889877643322 1111 11111222 26666667
Q ss_pred EeCC-----CcEEEEeCCCc
Q 028806 141 ISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 141 ~~~d-----~~i~iwd~~~~ 155 (203)
|+.+ ..+.+||..+.
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 7643 46788887654
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.29 E-value=0.022 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=25.8
Q ss_pred ceEEEEEeCCC---CeEEEEeCCCcEEEEeCCCc
Q 028806 125 PIESLALSHDR---KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 125 ~i~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|.++.|+|+. .+|+.+-.-+.|.|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 68999999854 47888778899999999953
No 392
>PRK10115 protease 2; Provisional
Probab=96.24 E-value=0.57 Score=39.85 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=61.1
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCc
Q 028806 2 TFAADAMKLLGTSG-----DGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~ 69 (203)
.|||+|++|+.+.. ...|++.++.++..+. .+.. . -..++|.++++.|+.+..+ ..|+++++.+.
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 58999998887633 2458899998875322 2221 1 1458999999877665432 36777777653
Q ss_pred c-ccceeeeccCCCcee-EEE-eeCCCEEEEEcC---CCcEEEEEc
Q 028806 70 K-DCSDRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (203)
Q Consensus 70 ~-~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---d~~i~~~d~ 109 (203)
. .....+.. ...... ..+ +.++.+++..+. ++.+.+++.
T Consensus 210 ~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 210 ASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 2 12223332 223333 224 447887665443 456888884
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.026 Score=49.01 Aligned_cols=137 Identities=16% Similarity=0.037 Sum_probs=84.2
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCCe--------EEE---eecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCC
Q 028806 3 FAADAMKLLG--TSGDGTLSVCNLRKNT--------VQT---RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~vw~~~~~~--------~~~---~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~ 68 (203)
.++|+...++ .+.+-.|.+||+.+-. ++. ..........++.|+|.-. ..+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 3456554333 3334478889986421 111 1111223456778888532 345666788999888764
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC---CCCceEEEEEeCCCCeEEEEe
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~ 142 (203)
....+..+. .....+++ |+|.|+.++.|-..|++.-|-.. .+....+.+. ..+.|.+|+|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 434444444 34566777 99999999999999999888643 3433333322 124799999988877776543
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.32 Score=36.32 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=76.2
Q ss_pred cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028806 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
.+....+.++.|+|+.+.|++........++-. +.+..+.++.-......-.+ +-.++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344556999999999998888777666655533 45677766543122333445 5556666666666788888776654
Q ss_pred ceeee-----ec----cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 113 RIIQP-----IA----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 113 ~~~~~-----~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..+.. +. .+.......++|.|.+..|+.+-.-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 22111 11 1112246789999998888888777777777665
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.90 E-value=0.46 Score=35.06 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=82.4
Q ss_pred ccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|..++.++-+.+.-| .|+.+++.+++......-.. .---.++.. +.+...-.=.++...+||..+ -+.+..+.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~y- 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIGTFPY- 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEEEEE--
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEEEEec-
Confidence 445666666666544 79999999998765443222 111233333 222333334578999999875 345555543
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+.=+.+ ..++..|+.+.....|+++|..+.+....+..... ..+..+.|. +|...|=.-....|...|..++
T Consensus 129 -~~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 129 -PGEGWGL-TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -SSS--EE-EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred -CCcceEE-EcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 3344555 36777788877788899999888776655543311 134556665 4544444444555666666665
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 206 ~V~ 208 (264)
T PF05096_consen 206 KVV 208 (264)
T ss_dssp BEE
T ss_pred eEE
Confidence 543
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.86 E-value=0.67 Score=38.53 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=77.4
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCccceEEEEE-eeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++...++|+.+ .++..||..+++-.. +..-..+-..+.. .-+|...++|+.|| ++..||..+ ..+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45667788887 357788877665322 1111111111111 23677888888886 477777653 333
Q ss_pred eeeeccCCCceeEE--EeeCCCEEEEEcCCC------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..... ........ ..-+|.+.++|+.++ .+..||..++.-...-.......-..++ .-++.+.+.|+.|+
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG 486 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence 33322 22222222 456788888887543 4678888776544322222111111222 22667777777665
Q ss_pred c-----EEEEeCCCc
Q 028806 146 M-----LKLWDLDDI 155 (203)
Q Consensus 146 ~-----i~iwd~~~~ 155 (203)
. +..||..+.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 666776654
No 397
>PHA03098 kelch-like protein; Provisional
Probab=95.84 E-value=0.8 Score=37.65 Aligned_cols=144 Identities=9% Similarity=-0.058 Sum_probs=66.7
Q ss_pred CCEEEEEcCCC------eEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccce
Q 028806 7 AMKLLGTSGDG------TLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 7 ~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~ 74 (203)
+..++.|+.++ .+..||..+..... +.... .+.......-++..++.|+.+ ..+..||..+ ..+.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE--SKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC--Ccee
Confidence 34455555432 46778877654422 21111 111111222356677777764 3466777653 2233
Q ss_pred eeeccCCCce--eEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 75 RFVGLSPNSV--DALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 75 ~~~~~~~~~v--~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
.... ...+. .++...++...+.|+.. ..+..||+.+++-...-.......-.+++ ..++..++.|+.+
T Consensus 372 ~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred eCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence 2221 11111 11234466667777632 35788998765433211111010111222 2355566666532
Q ss_pred ------CcEEEEeCCCc
Q 028806 145 ------SMLKLWDLDDI 155 (203)
Q Consensus 145 ------~~i~iwd~~~~ 155 (203)
..+.+||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 450 DNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCCcccceEEEecCCCC
Confidence 13788887654
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.79 E-value=0.28 Score=38.83 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc-eeEE--EeeCC----------------C-E
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS-VDAL--LKLDE----------------D-R 94 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-v~~~--~~~~~----------------~-~ 94 (203)
.....+.++..+|.+++.++...-|.|.++|+.. +..++.+++ .... +.-+ ..... . +
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-Chhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3445578899999999999988889999999974 567777777 3332 2111 11111 1 2
Q ss_pred EEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 95 VITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 95 l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
++.+-..|.|-||.++.|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 334556788888988888777666554
No 399
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.77 E-value=0.16 Score=36.64 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=48.4
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeee-------ecc------CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQP-------IAE------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+...+.++++.+.+|.+++||+.+++.+.. +.. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 466888999999999999999998764422 111 1123688999999998877765 5788998864
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.73 E-value=0.63 Score=35.29 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=57.0
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCc
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNR 113 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~-~~~~ 113 (203)
..+.+..+.-++++++++++..-..+.-|+-. ..............+..+ |.|++.+.+.+ ..|.|++=+. ...+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34568888888999999988776666677743 233443332135678889 99998776655 7788887762 2222
Q ss_pred eeee--ecc-CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 114 IIQP--IAE-HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.... ... .....+..++|.+++...++++ .|.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence 1111 111 1123588999999877777665 4443
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.68 E-value=0.58 Score=34.52 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=65.6
Q ss_pred ceEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE-ccCCc
Q 028806 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d-~~~~~ 113 (203)
.+.+.++++++..++... ....++++... +.....+.+ ..+... |++++...+....+....++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998776655 33455555443 222222232 245555 888977777766666666663 23332
Q ss_pred ee-eeeccCCCC-ceEEEEEeCCCCeEEEEe---CCCcEEEEeC
Q 028806 114 II-QPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDL 152 (203)
Q Consensus 114 ~~-~~~~~~~~~-~i~~i~~~~~~~~l~~~~---~d~~i~iwd~ 152 (203)
.. ..+...... .|..+.++|||..++... .++.|.+=-+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 22 112222111 699999999999877655 3466766654
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.66 E-value=0.7 Score=36.63 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeC--CCEEEEe-cCCCeEEEEEcCCccc----cceee----------
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFKD----CSDRF---------- 76 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~----~~~~~---------- 76 (203)
-.++.+||+.+.+.++++.-.. .....|.|..+ ..+=+++ .-.++|..|--...+. .+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4679999999999999887543 24556777654 3333333 2344444443211110 00011
Q ss_pred -------eccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC
Q 028806 77 -------VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP 111 (203)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~ 111 (203)
.. -..-++.+ .|.|.++|+.++. .|.|+.||+..
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11 12346777 7999999998876 89999999975
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.61 E-value=0.81 Score=35.73 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=61.1
Q ss_pred eEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecC---CC-eEEEEEcCCccccceeeeccCCCceeE-E--Ee
Q 028806 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDA-L--LK 89 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---d~-~i~~wd~~~~~~~~~~~~~~~~~~v~~-~--~~ 89 (203)
.|...++.+|+....+. ....+..+.|+|.. ..|+.|-. +. .-+||-++..+.....+.. +.....+ - |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 46666777776544443 45667889999854 44444432 22 2477877665555555544 3322222 2 79
Q ss_pred eCCCEEEEEcC-----CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 90 LDEDRVITGSE-----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 90 ~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
|+|..|..-+. +..|.-+|+.+++........ +...+.-+++|++++-=+.|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCC
Confidence 99998776432 445777888887665433332 35566678898887754443
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.51 E-value=0.96 Score=35.90 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=74.3
Q ss_pred ccCCEEEEEc--C----CCeEEEEEcCCCeEEEeecCCc---cceEEEEEeeCCCEEEEecC------------------
Q 028806 5 ADAMKLLGTS--G----DGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKVVCGSQ------------------ 57 (203)
Q Consensus 5 p~~~~l~~~~--~----d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~------------------ 57 (203)
|+|+.++++- . -|.+.++|-.+-+.....+... .--..+-|.|..+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 6777777652 2 2567788877766665554322 23456778888888888532
Q ss_pred --CCeEEEEEcCCccccceeeeccCCC--ceeEE-E--eeCCCEEEEEcC-CCcEEEEEc-cCCc----eeeeeccCC--
Q 028806 58 --SGTVLLYSWGYFKDCSDRFVGLSPN--SVDAL-L--KLDEDRVITGSE-NGLISLVGI-LPNR----IIQPIAEHS-- 122 (203)
Q Consensus 58 --d~~i~~wd~~~~~~~~~~~~~~~~~--~v~~~-~--~~~~~~l~~~~~-d~~i~~~d~-~~~~----~~~~~~~~~-- 122 (203)
-.++.+||+.. .+.++++.- ... ....+ | .|+..+-++++. ...|..|-- ..++ .+..+....
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 25899999974 566777654 322 23334 4 566665444443 444555443 3332 111221100
Q ss_pred --------------CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 123 --------------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 123 --------------~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
..-|+.|.+|.|.++|..++ .+|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 01368899999999998777 78999999997754
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.38 E-value=0.16 Score=36.65 Aligned_cols=71 Identities=30% Similarity=0.335 Sum_probs=50.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEee-------c-------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
..++.+|++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-+++-+ +|..+.|+...
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L- 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL- 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc-
Confidence 456788988899999999999987654211 1 2446688888888888777665 47788888752
Q ss_pred cccceeee
Q 028806 70 KDCSDRFV 77 (203)
Q Consensus 70 ~~~~~~~~ 77 (203)
.++..+.
T Consensus 97 -~~W~~vs 103 (219)
T PF07569_consen 97 -GCWIRVS 103 (219)
T ss_pred -ceeEEec
Confidence 4444443
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.22 Score=40.07 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=63.5
Q ss_pred EEEcCCCeEEEEEcCC-Ce-EEEeecCC----ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 11 LGTSGDGTLSVCNLRK-NT-VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~-~~-~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+.|-.++.|.-||.+- +. .+...+.| .....|.+-..+| ++++|+.+|.|++||- ........+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 4455678899999873 22 22222222 1234555555444 7889999999999997 34455566777 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
..+ .+.+|++|+..|... +.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~ty-LlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKTY-LLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEecccE-EEEEEE
Confidence 999 899999988776553 445554
No 407
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.12 E-value=1.6 Score=36.05 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=85.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc----cceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeee
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~ 77 (203)
..|+.++.++.|.-+|..+|+.+....... ..+.+.-.--++ .++++. .+|.|..+|..+.....+ +.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~-~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR-RY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe-cc
Confidence 456777888999999999998887654211 111111111134 344433 267888888865432221 11
Q ss_pred cc------------------------------CCCceeEE--EeeCCCEEEEEcCC-----C-----------cEEEEEc
Q 028806 78 GL------------------------------SPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGI 109 (203)
Q Consensus 78 ~~------------------------------~~~~v~~~--~~~~~~~l~~~~~d-----~-----------~i~~~d~ 109 (203)
.. ....++.. +.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 01223332 45555666655422 2 5667888
Q ss_pred cCCceeeeeccCCC--------CceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 110 LPNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 110 ~~~~~~~~~~~~~~--------~~i~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++|+....++.... ....-+.+..+|+ .++.+..+|.+++.|-++++..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 99998876654221 1111223334665 6778889999999999998764
No 408
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.08 E-value=0.0033 Score=49.54 Aligned_cols=132 Identities=11% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|-|.+.-++.+..+..+..||-.. +....+. .......++|..++..++ .+-..+.+++||+... .-+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--ytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--YTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh--hHHHHhc-c
Confidence 3556666677777777777777443 2222222 234566788888776654 4556789999999742 2223332 2
Q ss_pred CCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 81 PNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
...-.++ |++....++.+...|.+.+|+..+.+.+...-.|.. ++.+++|.+.+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeee
Confidence 2222233 788888899999999999999887666554444644 789999999865443
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.07 E-value=0.9 Score=37.99 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEe--eCCCEEEEecCCCeEEEEEcC-----Cccc---cceee--e
Q 028806 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSWG-----YFKD---CSDRF--V 77 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~-----~~~~---~~~~~--~ 77 (203)
++-+....+.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.+|--. +... .+..+ .
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 333344679999998876433222 346789999996 588888888888888887431 1111 22222 2
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d 108 (203)
.....+|... |-++|..++.++. .+.|++
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 2023567777 8888876665443 466766
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.01 E-value=1.6 Score=35.54 Aligned_cols=139 Identities=10% Similarity=-0.105 Sum_probs=65.5
Q ss_pred cCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCC---eEEEEEcCCccccceeeecc
Q 028806 6 DAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~ 79 (203)
++...+.|+.+ ..+..|+..++.-.. +..-. .........-+++..+.|+.++ .+..||..+ ..+.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~- 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPS- 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC--CEEEeCCC-
Confidence 45555666643 357778876553322 11111 1111122233677777777543 466787653 23332221
Q ss_pred CCCce--eEEEeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeEEEEeCC-----CcEEEE
Q 028806 80 SPNSV--DALLKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKLW 150 (203)
Q Consensus 80 ~~~~v--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~iw 150 (203)
-..+. .++...++.+.+.|+ .+.+||..+++-.. .+... .... +++ .-+++..+.|+.+ ..+..|
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC-cccc-EEE-EECCEEEEECCcCCCcccceEEEE
Confidence 11111 122344566666653 46788887654332 22211 1112 222 2366777777743 346666
Q ss_pred eCCC
Q 028806 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
|..+
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 6654
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.00 E-value=0.29 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=48.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----------CeE--E-Eee--------cCCccceEEEEEeeC---CCEEEEec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--Q-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~l~~~~ 56 (203)
|.+||.|.+|+..+..| |.|..+.. ++. . +++ ..+...|..+.|+|. +..|++-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999998888755 44444421 111 1 111 123457889999996 47888888
Q ss_pred CCCeEEEEEcCCcccccee
Q 028806 57 QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~ 75 (203)
.|+.+++||+.....+...
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444433
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=1.2 Score=35.57 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=74.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc---eeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---DRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~ 79 (203)
|.+..+.+.+.|.+.=|-.... -++..--...++|.++.|++|.+.+++--.+.+|.++......... ...+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 3344444444455555554432 1111112345689999999999999999999999999874211111 11122
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
....|...+..+..-++.....| +-+|..... +.+.....+.- .|.-..|.|+-+.++-+
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLS 171 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEeee
Confidence 23335555334446666666655 556654432 23334444533 67778888887754433
No 413
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.88 E-value=0.24 Score=39.30 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-Eee-cC-Cc---cceE-EEEEeeCCCEEEEecCCCeEEEE-EcCCccc-cc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EF-SE---EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKD-CS 73 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-~~~-~~-~~---~~v~-~~~~~~~~~~l~~~~~d~~i~~w-d~~~~~~-~~ 73 (203)
..|+|+.+..-+. .++.|+++.+.... +.+ .. .. ..|+ .+..-..+..+.+.+.||-|.-| |++..+. .+
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998877665 67888887653221 111 11 11 1121 11122345667788888888776 5543222 11
Q ss_pred ---eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 74 ---DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 74 ---~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
+.++- ....+..+ -..+.+.+++-...|.+.++.....+.+..-+.- + .+..++++|++.+|++-. .|.|++
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec-CCceEE
Confidence 12221 22333333 2334456777788888887764443333222222 3 466789999999988754 578999
Q ss_pred EeCCCcccCCC
Q 028806 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
+.+++..++-.
T Consensus 383 ~~l~Nr~Peis 393 (733)
T COG4590 383 AQLENRNPEIS 393 (733)
T ss_pred EEecCCCCCcc
Confidence 99998877744
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.87 E-value=0.087 Score=44.95 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=79.2
Q ss_pred CeEEEEEcC--CCeE-----EEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce--
Q 028806 17 GTLSVCNLR--KNTV-----QTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-- 84 (203)
Q Consensus 17 ~~i~vw~~~--~~~~-----~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v-- 84 (203)
|.+.||++. .|+. +...+.....+.-+.|.| +.-++..+..++.+++..+... ....+.+ |...+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH--HHHHHHh-cCCCccc
Confidence 567899876 2332 222233334455556654 5556666677888888766432 2233333 43222
Q ss_pred --------eEE--EeeCCCEEEEEcCCCcEEEEEcc-CC----ceeeeeccCCCCceEEEEEeCC-------C--CeEEE
Q 028806 85 --------DAL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSEYPIESLALSHD-------R--KFLGS 140 (203)
Q Consensus 85 --------~~~--~~~~~~~l~~~~~d~~i~~~d~~-~~----~~~~~~~~~~~~~i~~i~~~~~-------~--~~l~~ 140 (203)
.-+ .+|||+.++.++.||.+++|.+. +| .++..++.|.+.+-.|.-++.+ + .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 222 59999999999999999998764 23 3445556665333333223322 1 23344
Q ss_pred Ee-CCCcEEEEeCCCcccC
Q 028806 141 IS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~~ 158 (203)
++ .+..+++|.....++-
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 44 4667999986655443
No 415
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.74 E-value=0.21 Score=25.70 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=25.4
Q ss_pred cceEEEEEeeCC---CEEEEecCCCeEEEEEcCC
Q 028806 38 EELTSVVLMKNG---RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 38 ~~v~~~~~~~~~---~~l~~~~~d~~i~~wd~~~ 68 (203)
+.|+++.|+|.. .+|+.+-..+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888888889999999984
No 416
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.52 E-value=0.98 Score=33.49 Aligned_cols=101 Identities=13% Similarity=0.227 Sum_probs=59.1
Q ss_pred eCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---------
Q 028806 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------- 116 (203)
..++.|+.|+.+| ++++++.......... ....|..+ .-|+-+.+++-+. +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3577899998888 8999984322332222 23347888 6676666666544 899999987543322
Q ss_pred ------eeccCCCCceEEEE--EeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 117 ------PIAEHSEYPIESLA--LSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ------~~~~~~~~~i~~i~--~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+... . .+..++ -.+.+ .+|+++ ..+.|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEE-ECCEEEEEEEECC
Confidence 11111 1 344444 12233 444444 4568998888663
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.44 E-value=1.5 Score=32.53 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=68.3
Q ss_pred eEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCcee
Q 028806 40 LTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~~~d~~~~~~~ 115 (203)
...+.|..++.++-+.+.-| .|+.+|+.+ ++......- ......= ...-+..|+ ..-.++...+||..+-+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPL--PPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE---TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEEC--CccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 45677878888888887765 788888875 344333322 1122111 222233444 4455888999999998888
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++....+ -+.++ .++..|+.......|+++|..+....
T Consensus 124 ~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 124 GTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 88866533 35666 46777777777788999998877654
No 418
>PRK13684 Ycf48-like protein; Provisional
Probab=94.42 E-value=1.8 Score=33.43 Aligned_cols=145 Identities=11% Similarity=0.008 Sum_probs=74.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
.+.|++.+++++.. |.+..-.-..++ -..........++++.+.++++.++++ ..|.+++=... .+........
T Consensus 179 ~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-DLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-CCCccccccCCc
Confidence 34566655555543 544332111122 111122334578899999988877765 45665432222 2333332221
Q ss_pred c-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ....+..+ +.|++..++ ++.+|.|. .....++.-..... ......+.+.|..+++.+++ +..|.|..|+-
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred cccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 0 11235666 677766554 45566554 34444444333322 11125778888777666554 55788877753
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.40 E-value=2.9 Score=35.83 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=48.6
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEcc----------CCcee---ee-------eccCCCCceEEEEEeCC---CCeE
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGIL----------PNRII---QP-------IAEHSEYPIESLALSHD---RKFL 138 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~----------~~~~~---~~-------~~~~~~~~i~~i~~~~~---~~~l 138 (203)
.|..+ ++|+|.+++..+..|.+ |..+. .|+.. .+ +..+....|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45666 79999999988887643 33331 11111 11 11122237889999996 5899
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 028806 139 GSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (203)
++-..|+.|++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999996443
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.39 E-value=2.8 Score=35.62 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeec--C--------------CccceEEEEEee--CCCEEEEecCCCeEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSE--F--------------SEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~------~~~~~--~--------------~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 62 (203)
.++|+.+. .+.|.||++..-.. ...+. . -.-.|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58899999864211 11110 0 011244444332 346788899999999
Q ss_pred EEEcCCcc----------c---------cceeeeccCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCcee----e
Q 028806 63 LYSWGYFK----------D---------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRII----Q 116 (203)
Q Consensus 63 ~wd~~~~~----------~---------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~i~~~d~~~~~~~----~ 116 (203)
+|.+..-- . +...+. -....+.+ ++ ...++||+++....|.|+-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 99763100 0 111111 23467778 66 67788888888888888876542111 1
Q ss_pred eeccCCCCceEEEEEeCCC---C---eEEEEeCCCcEEEEeC
Q 028806 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDL 152 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~iwd~ 152 (203)
... + ...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 2 2268889997743 2 6778888999988887
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.30 E-value=0.61 Score=36.98 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=51.6
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC-C----------------CeE-EEEeCC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-R----------------KFL-GSISHD 144 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~----------------~~l-~~~~~d 144 (203)
+.++ .+|.+.+.++...-|.|.++|+..+..+..+++-.+..+.-+..... . .+| +-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 4556 68999999998888999999999998888887765432222221111 1 122 244468
Q ss_pred CcEEEEeCCCcccC
Q 028806 145 SMLKLWDLDDILKG 158 (203)
Q Consensus 145 ~~i~iwd~~~~~~~ 158 (203)
|.|.||.++++..-
T Consensus 390 g~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 390 GILEVWSMRQGPRV 403 (415)
T ss_pred CeEEEEecCCCCEE
Confidence 89999999887654
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=0.72 Score=40.71 Aligned_cols=115 Identities=8% Similarity=-0.056 Sum_probs=68.3
Q ss_pred cceEEEEEeeCCCEEEE--ecCCCeEEEEEcCCcccc----ceeeec-----cCCCceeEE-EeeCCCE-EEEEcCCCcE
Q 028806 38 EELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDC----SDRFVG-----LSPNSVDAL-LKLDEDR-VITGSENGLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~----~~~~~~-----~~~~~v~~~-~~~~~~~-l~~~~~d~~i 104 (203)
.++..+...+|+...++ .+.+-.|+.||+...... ...+.. .......++ |+|.-.. .+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35566666777765444 334458999999642111 111111 011223444 7765433 3455568888
Q ss_pred EEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 105 SLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 105 ~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+... .....+... ...++++|+|.|..++.|-..|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~p~t--~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVT--NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccCcc--cceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 87765432 222333332 2689999999999999999999999886543
No 423
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.11 E-value=3.7 Score=35.97 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=83.0
Q ss_pred eEEEEEcCCCeEEEeecCC-c---cceEEEEEeeC-CCEEEEecC----------CCeEEEEEcCCccccceeeec-cCC
Q 028806 18 TLSVCNLRKNTVQTRSEFS-E---EELTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSP 81 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~-~---~~v~~~~~~~~-~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~-~~~ 81 (203)
.++++|-.+-+.+...+.. . ..+.++.|..| +.++++|.. .|.|.+|.+.. ...++.+.. .-.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3667776655444332211 1 23455557776 566666642 47888888764 233333221 024
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++.--+|++++. -...|++|+..+.+.+..-..+.. ++..+...-.|..+++|..-+.|.+...+..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 5566663335666554 445799999888766655555534 78888888899999999988888777665544
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.75 E-value=3.9 Score=35.36 Aligned_cols=110 Identities=8% Similarity=0.063 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc--------eEEEEEee----------------CCCEEEEecCCCeEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLMK----------------NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~d~~i~ 62 (203)
+..|+.++.++.|.-.|..+|+.+..+...... .+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988776532210 12233321 234778888899999
Q ss_pred EEEcCCccccceeeeccCCCce-------------eEE-Eee--CCCEEEEEcC----------CCcEEEEEccCCceee
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~ 116 (203)
-.|..+. +.+..+.. .+.+ ..+ ..| .+..+++++. .|.|+-+|+.+|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9998764 43333221 1110 011 112 2345555542 5889999999998876
Q ss_pred eec
Q 028806 117 PIA 119 (203)
Q Consensus 117 ~~~ 119 (203)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 653
No 425
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.71 E-value=3.6 Score=34.35 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=75.5
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028806 7 AMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~ 72 (203)
+.+++.|+.. ..+..+|..++.... .+.... .-.+++.. ++...++|+.+ .++..||.... .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~--~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN--Q 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC--c
Confidence 4566777766 357788887763322 222212 22333333 45777888888 35777887642 2
Q ss_pred ceeeeccCCCce-eEEEeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCCCceEEE-EEeCCCCeEEEEeCCC
Q 028806 73 SDRFVGLSPNSV-DALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-ALSHDRKFLGSISHDS 145 (203)
Q Consensus 73 ~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~~~~d~ 145 (203)
+..+..-..... ..+..-+|.+.++|+.+|. |-.||..+.+-...-... . +.... .-.-+|...++||.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-T-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-c-ceeeeEEEEECCEEEEEcCcCC
Confidence 433322011111 1123557888888888864 667887665432221111 1 12222 2223677777777444
Q ss_pred ------cEEEEeCCCcc
Q 028806 146 ------MLKLWDLDDIL 156 (203)
Q Consensus 146 ------~i~iwd~~~~~ 156 (203)
.+..||..+..
T Consensus 439 ~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNT 455 (571)
T ss_pred CccccceEEEEcCCCCc
Confidence 46677765543
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.52 E-value=0.48 Score=23.75 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=23.5
Q ss_pred ccCCEEEEE-cCCCeEEEEEcCCCeEEEeecC
Q 028806 5 ADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 5 p~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~ 35 (203)
|++++|+++ ..+++|.++|..++..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 677766554 4578999999988887776664
No 427
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.51 E-value=3.2 Score=33.12 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.|.+++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 489999999889999999999999999975
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.49 E-value=1.3 Score=36.37 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=63.0
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCC-----CeEEEeecCC---c--cceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS---E--EELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~---~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
+.|.|- ...|++.-....|.||.+.. ++.+..-..+ . --...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 357764 22344445558899999852 2222211111 1 11245789999888877666555556666
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEc
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-GLISLVGI 109 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~ 109 (203)
+.....+..-.. ..+.|.|. |.+||+.|+++-.. =.-++||-
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 543333322223 46778777 99999998876543 23567874
No 429
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.31 E-value=3.8 Score=33.39 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc---eeEE-EeeC
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (203)
...+.++|.. |..+..+.........+...++|.+++... ..++.+|+. ++.+..... .... -..+ .-|+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 3455566643 444444433222221156678888887665 778888875 454444433 2221 2334 5778
Q ss_pred CCEEEEEcC-------------CCcEEEEEccCCceeeeecc--C-----------------------CC-CceEEEEEe
Q 028806 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIAE--H-----------------------SE-YPIESLALS 132 (203)
Q Consensus 92 ~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~--~-----------------------~~-~~i~~i~~~ 132 (203)
|++|+.+.. .-.|..+| .+|+.+..+.. | .+ ..+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887761 11244444 55554433210 0 00 257899999
Q ss_pred C-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 133 H-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+ ++.+|+++-.-..|...|.+++..
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcE
Confidence 9 555555555556788888666543
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.20 E-value=0.7 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.1
Q ss_pred ceEEEEEeeCC------CEEEEecCCCeEEEEEcC
Q 028806 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~~wd~~ 67 (203)
.+..++|+|.| -+|++.+.++.|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888898854 367778888888888754
No 431
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.12 E-value=5.1 Score=34.80 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=70.9
Q ss_pred ccceEEEEEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeeccCCC----------ceeEE-EeeCCCEEEEEcC
Q 028806 37 EEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPN----------SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 37 ~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~----------~v~~~-~~~~~~~l~~~~~ 100 (203)
..+...++|+| +...|++....|...||++... ...+..... ..+ ....+ |.++.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 34677899998 4468999999999999999211 111111111 111 12244 7777777777665
Q ss_pred CCcEEEEEccCCceee-eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 101 NGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
. .+.++|+.+..... .....+...|..+.-+|.. .+++.. +...|...++..
T Consensus 224 ~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 S-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred C-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 4 57899998776533 3333223378888888873 233333 346788888876
No 432
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2.9 Score=37.68 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=78.4
Q ss_pred cCCCeEEEEEcCCCeEEEeecCCccceEEEEEe-e-------CCCEEEEecCCCeEEEEEcCCcc--ccceee------e
Q 028806 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-K-------NGRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (203)
Q Consensus 14 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~------~ 77 (203)
+-|+.+.+|++.++.....+.+....|..+..- | .=+++.+...--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357899999999866666666555555555432 2 22333333333445555442111 111111 1
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEE--EEEccCC---c-e----------------eeeeccCCCCceEEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLIS--LVGILPN---R-I----------------IQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~--~~d~~~~---~-~----------------~~~~~~~~~~~i~~i~~~~~ 134 (203)
. ..-.|.++ ...+|+.+++|-. |.|+ +|....+ + + +..+.+....+|..+.....
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 1 24457777 5667776666544 4333 1222211 1 1 11122122338999999888
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028806 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.+-+..++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999977
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.10 E-value=2.4 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee----cCCccceEEEEEeeC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~ 48 (203)
|+|.|+|+++++ ...|.|++++ ..+.. +..+ ......+..++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999987776 4589999999 43332 2222 223457899999994
No 434
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.85 E-value=1.9 Score=35.64 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=42.6
Q ss_pred eCCCEEEEecCCCeEEEEEcCC---ccccceee-----------ecc---C-------CCceeEE-Eee----CCCEEEE
Q 028806 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDRF-----------VGL---S-------PNSVDAL-LKL----DEDRVIT 97 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~-----------~~~---~-------~~~v~~~-~~~----~~~~l~~ 97 (203)
++...++.+..||.+....... .+..+... .+. . ......+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 11111111 000 0 1222333 344 6789999
Q ss_pred EcCCCcEEEEEccCCceeeee
Q 028806 98 GSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 98 ~~~d~~i~~~d~~~~~~~~~~ 118 (203)
.+.|+.|++||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885543
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=2.7 Score=34.29 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=48.2
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEE---------ccCCceeeee----------ccCCCCceEEEEEeCCC---CeEEE
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVG---------ILPNRIIQPI----------AEHSEYPIESLALSHDR---KFLGS 140 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d---------~~~~~~~~~~----------~~~~~~~i~~i~~~~~~---~~l~~ 140 (203)
|..+ .++.|..++.++.+|.+.++= ++.|+..-+. ...+.-.+..++|+|+. .+|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 688999999999998665432 1234322111 11111146788999975 67888
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
-+.|..|++|++....
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 8889999999987654
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.74 E-value=4.2 Score=32.44 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=84.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCcc-c---
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D--- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~-~--- 71 (203)
+...|++|+..|.++||....+. .+... .-..+|..+..-. ....|++ -.-..+.+|.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999986432 22222 2346777776532 2234444 445678888773211 1
Q ss_pred ----cceeeeccCCC--ceeEE----E-eeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 72 ----CSDRFVGLSPN--SVDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ----~~~~~~~~~~~--~v~~~----~-~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.+..+.. |.- ....+ | ... ..+|.+-+.||.+.+|+-+.-.....+... - -...+.|.+.-..++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1112222 211 11111 3 223 456778889999999986543322333322 1 123578888888899
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028806 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
+++.+..|..|......
T Consensus 191 t~sss~~l~~Yky~~La 207 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLA 207 (418)
T ss_pred EecCceeEEEecHHHhh
Confidence 99988899998764433
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.66 E-value=1.6 Score=36.98 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCC-------C----e---------EEEeecCCccceEEEEEe--eCCCEEEEecCCCeEEEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~w 64 (203)
...|+.+..||.|.+|.+.+ . . +...+ .....+++++++ ...+++|+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 35788889999999997631 0 0 01111 124568999998 778889999888888888
Q ss_pred EcCCcc-c-cceeeeccCCCceeEE-Eee-----CCC-EEEEEcCCCcEEEEEc
Q 028806 65 SWGYFK-D-CSDRFVGLSPNSVDAL-LKL-----DED-RVITGSENGLISLVGI 109 (203)
Q Consensus 65 d~~~~~-~-~~~~~~~~~~~~v~~~-~~~-----~~~-~l~~~~~d~~i~~~d~ 109 (203)
-+.... + ....-.. +...|-++ |-+ .|. ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 665321 1 1111112 44566677 533 233 6778888999988887
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.43 E-value=0.93 Score=32.91 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (203)
+...+|++.+++-..++|...|..+|+.+.+++-...+|++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3445677777777778999999999999999998899999999964
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.23 E-value=0.8 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.5
Q ss_pred eCCCEEEEEcC-CCcEEEEEccCCceeeeeccC
Q 028806 90 LDEDRVITGSE-NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 90 ~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~ 121 (203)
|+++++++++. ++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 56777777664 778999999888887777654
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.99 E-value=1.2 Score=36.86 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=41.8
Q ss_pred eCCCEEEEEcCCCcEEEEEccC----Cceeee-----------eccC----------CCCceEEEEEeC----CCCeEEE
Q 028806 90 LDEDRVITGSENGLISLVGILP----NRIIQP-----------IAEH----------SEYPIESLALSH----DRKFLGS 140 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~-----------~~~~----------~~~~i~~i~~~~----~~~~l~~ 140 (203)
++...++.+..+|.+....... +..... +.+- .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3777888888888887776553 211111 0000 011345566666 6789999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028806 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
.+.|+.+++||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999887
No 441
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.76 E-value=6 Score=31.98 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeec-----CCccceEEEEEeeCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSE-----FSEEELTSVVLMKNG 49 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~-----~~~~~v~~~~~~~~~ 49 (203)
|+|.|+|++|++--..|.|++++..++. .+..+. ........|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5789999877776446999999865442 222121 135678999999874
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.36 E-value=1 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=19.7
Q ss_pred cCCccceEEEEEeeCCCEEEEecC-C--CeEEEE
Q 028806 34 EFSEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (203)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~w 64 (203)
......-....|+|||+.|+.++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778899999998876654 4 555444
No 443
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.29 E-value=9.2 Score=33.22 Aligned_cols=153 Identities=10% Similarity=-0.025 Sum_probs=86.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccce-------------EEEEEee--CCCEEEEecC----------CCeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGTV 61 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i 61 (203)
+..|+.++.|+.|.-.|..+|+....+... +.| ..+.-.| .+..+++++. .|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 457888888999999999999888665321 111 0111111 1335555532 5889
Q ss_pred EEEEcCCccccceeeecc----------------CCCceeEE--EeeCCCEEEEEc------------------CCCcEE
Q 028806 62 LLYSWGYFKDCSDRFVGL----------------SPNSVDAL--LKLDEDRVITGS------------------ENGLIS 105 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~----------------~~~~v~~~--~~~~~~~l~~~~------------------~d~~i~ 105 (203)
+-+|+.+.+... .+... ....++.. +.+...+++.+. ..+.|.
T Consensus 339 ~A~Da~TGkl~W-~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 339 RAFDVNTGALVW-AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEECCCCcEee-EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999997643322 22110 01122222 344444444322 124566
Q ss_pred EEEccCCceeeeecc-CCC-------CceEEEEEeC-CCC---eEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 106 LVGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~-~~~-------~~i~~i~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
-.|+++|+....++. |.+ ....-+.+.. +|+ .++.++.+|.++++|-++++..-..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 778889988877754 221 0111122322 553 6888889999999999998765443
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.92 E-value=6.9 Score=31.10 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=58.5
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-----ceeeecc-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-----SDRFVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
...+..+.|.+++..++++ ..|.+..= .. .+.. +...... ....+..+ |.+++..+ .++..|.+... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s-~ 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KG-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS-T 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cC-CCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe-C
Confidence 4568899999998887766 45654432 22 1221 1222110 11246667 66666654 45566765444 3
Q ss_pred cCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 110 LPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 110 ~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
..|+.-....... ....+.+.|.++++.+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3444433332111 2268899988776655554 57776654
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.84 E-value=6.2 Score=30.43 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=51.3
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee----eccCCCceeEE-EeeC---CCEEEEEcC-C-------
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (203)
..+.|+|.|+++.+++ ...|.|++++..... ..+..+ .. .......+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987776 459999999833211 111111 11 23445666 7773 344443332 1
Q ss_pred -CcEEEEEccCC-------cee-eeecc--CCCCceEEEEEeCCCCeEEEEeC
Q 028806 102 -GLISLVGILPN-------RII-QPIAE--HSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 102 -~~i~~~d~~~~-------~~~-~~~~~--~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..|.-|.+..+ +.+ ..+.. ........|.|.|+|.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13443444332 111 12222 11124577999999976665553
No 446
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.81 E-value=1.2 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CC--CcEEEE
Q 028806 125 PIESLALSHDRKFLGSIS-HD--SMLKLW 150 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~-~d--~~i~iw 150 (203)
......|+|||++|+.++ .+ |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 567899999999888666 44 555555
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.76 E-value=4 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.6
Q ss_pred ceEEEEEeCCC------CeEEEEeCCCcEEEEeCCCcc
Q 028806 125 PIESLALSHDR------KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~i~~~~~~------~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.+..++|||-| -.|++.+.++.|.||......
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~ 124 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP 124 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc
Confidence 68899999943 357888899999999876543
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.73 E-value=0.28 Score=42.08 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEE-----------EEeeCCCEEEEecCCCeEEEEEcCCcc----
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSV-----------VLMKNGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
+.-++.++-.+++|++..+.+... ..+..|..++..+ ..+|||..|+..+.||.+++|.+-..+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 445677777888998887764321 2333454443322 268999999999999998888764322
Q ss_pred ccceeeeccCCCcee-EE-EeeCC---------CEEEEEc-CCCcEEEEEccCCcee
Q 028806 71 DCSDRFVGLSPNSVD-AL-LKLDE---------DRVITGS-ENGLISLVGILPNRII 115 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~-~~-~~~~~---------~~l~~~~-~d~~i~~~d~~~~~~~ 115 (203)
.++...+. |..... |. |+.+. .++++++ .++-+++|.....+++
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 34445555 553322 22 33221 1233333 3556888886655554
No 449
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.64 E-value=7.5 Score=31.03 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.+++..+ .||++++++.-..+|.+.+....-.+.+..+..........|.|.-++..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 3567778 899999999999999998887655555555544433355677787665433
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=90.44 E-value=8.5 Score=31.39 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=50.8
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeee
Q 028806 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~ 77 (203)
+..+++|+.+ ..+..||..++.-.. .+....... ++ ..-++...+.|+.+ ..+..||... ..+..+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~--n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGD--AAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCC--CeEEECC
Confidence 3445666643 246678877654322 221111111 12 23466677777753 3577787642 2233222
Q ss_pred ccCCCcee--EEEeeCCCEEEEEcCCC---cEEEEEccCCc
Q 028806 78 GLSPNSVD--ALLKLDEDRVITGSENG---LISLVGILPNR 113 (203)
Q Consensus 78 ~~~~~~v~--~~~~~~~~~l~~~~~d~---~i~~~d~~~~~ 113 (203)
. -..+.. ++..-+|...+.|+.++ .+..||..+.+
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 2 111111 12345677777777543 46678877654
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=89.27 E-value=8.6 Score=29.71 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=58.5
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
...+..+.+.|++.+++++. .|.+..- ....+.............+..+ +.+++..++++ ..|.+.+-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888887666554 4544431 1112233333332034566777 78888876665 4566643223333322
Q ss_pred eeeccC---CCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 116 ~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
.....+ ....+..+.+.|++..+++ +.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 221111 1225788999998775554 4566554
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.10 E-value=4.8 Score=26.55 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
|......|++++.-|.|.|++..... .+..+. -...|++|+-.+ ....|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 44555678888888999999876321 222332 245577776544 2345666654 57999999754
Q ss_pred cccceeeeccCCCceeEE-E---eeCCCEEEEEcCCCcEEEEEccCCceeee
Q 028806 70 KDCSDRFVGLSPNSVDAL-L---KLDEDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 117 (203)
..... +. -...+.++ + .....-++..+.+..|.-||.+-.+...+
T Consensus 84 ~d~Fy--ke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFY--KE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhh--hh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 33322 11 23455555 3 22223344444556677777544444433
No 453
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=88.90 E-value=4.8 Score=35.15 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC-----eEEEEEcCCccccceeee
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~wd~~~~~~~~~~~~ 77 (203)
+.|.+-|.........-..+..+|.+.+|+|||+.|+. .+..+ .|++-++.+.+.-+..+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 57888888765443331345778999999999999987 44333 588888876554433443
No 454
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.73 E-value=10 Score=29.75 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred cceEEEEEeeCCCEEEEec-----------CCC-eEEEEEcCC-cccc--ceeeeccCCCceeEE-EeeCCCEEEEEcCC
Q 028806 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~wd~~~-~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....|+|.++|+++++.. ..+ .|.+++-.. .+.. ...+.. .......+ +.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4466789999999877753 223 666665422 1221 233333 33344666 67777 4444444
Q ss_pred CcEEEEEccC-----Cce--e-eeeccC---CCCceEEEEEeCCCCeEEEEe
Q 028806 102 GLISLVGILP-----NRI--I-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 ~~i~~~d~~~-----~~~--~-~~~~~~---~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+++.+... ++. + ..+... .......+.|.|+|.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4333434321 111 1 112221 012467899999998766544
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=3.9 Score=32.85 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=57.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+.+ .-++.....| +.+|-+......++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 469999999999999999999998543322 222334456888899865 4455444333 6667665444444444
Q ss_pred eccCCCce-eEEEeeCCCEEEEE
Q 028806 77 VGLSPNSV-DALLKLDEDRVITG 98 (203)
Q Consensus 77 ~~~~~~~v-~~~~~~~~~~l~~~ 98 (203)
+. +.-.| |-+|.++.+.++.+
T Consensus 150 ks-~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hh-cccCccEEEEccccceEeee
Confidence 44 44333 23355555544433
No 456
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.90 E-value=1.8 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.4
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEee
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRS 33 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~ 33 (203)
.++.++.++.+..+|..+|+.+...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999988876543
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.66 E-value=12 Score=29.31 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=76.6
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC-cee
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~ 85 (203)
.+..+..+|.|.-.|..++..+....... ..+..-.+..+|+ ++.++.++.++.+|..+ +..+-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CCCeEEe
Confidence 45555678888888888887665443321 2333333334665 67777888888888853 444444443 221 011
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeC--CCcEEEEeCCCcccC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISH--DSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~ 158 (203)
...-.....++.++.++.+...+..+|..+....... ...+..-.. .....++.+.. ++.+.-.|..++...
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111123344444467888888888887766643321 101111111 12233444443 456666777666544
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.55 E-value=8.5 Score=27.62 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=35.3
Q ss_pred CEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeCCCEEEEec
Q 028806 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (203)
..|+.+.....|.+|++.+ .+.+..+..- +.|..+.++..|.+|++--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 4554445557899999883 3455566543 7899999999999999853
No 459
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.94 E-value=2.4 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.2
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
.++.++.+|.|.-+|..+|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566789999999999999998877654
No 460
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.91 E-value=11 Score=28.31 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=86.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--c
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~ 79 (203)
+-.|||..-+++...+.|--.|..+++....-.+.......|..-||+..-++-+.. -|.-.|-++ ..+..|.- .
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 345677766777666777777777777655444555566777788888766654333 344444432 12222221 0
Q ss_pred -CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 -SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........ |.+.|++.+++... .---.|.. ...+..+....+..-+.|+-.|+|..-++.-.+..|-..|..++
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 12334444 89999888887632 11111211 12344444443335677888999987777667777777776655
No 461
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.08 E-value=2.8 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.5
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~ 35 (203)
.++.++.+|.|+-.|..+|+.+...+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668999999999999999887754
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=3.6 Score=33.58 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=42.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEc---------CCCeEEEee----------c-CCccceEEEEEeeCC---CEEEEecCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNL---------RKNTVQTRS----------E-FSEEELTSVVLMKNG---RKVVCGSQS 58 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~---------~~~~~~~~~----------~-~~~~~v~~~~~~~~~---~~l~~~~~d 58 (203)
..|+.|..++-++.+|.+.++-. ..|+..-.. . ...-.+...+|+|+. ..|..-+.|
T Consensus 110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 35788888888888886554431 123211111 1 112245678899976 567777789
Q ss_pred CeEEEEEcCC
Q 028806 59 GTVLLYSWGY 68 (203)
Q Consensus 59 ~~i~~wd~~~ 68 (203)
..+++|++..
T Consensus 190 nviRiy~lS~ 199 (741)
T KOG4460|consen 190 NVIRIYSLSE 199 (741)
T ss_pred cEEEEEecCC
Confidence 9999999864
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.74 E-value=4 Score=29.23 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=35.7
Q ss_pred CEEEEEcCCCcEEEEEccC--CceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 93 DRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 93 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..|+.+...+.|-+|++.. .+.+..+..- + .|..+.++..|.||++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEEe
Confidence 4454446677899999883 3455556544 3 7999999999999998653
No 464
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.57 E-value=14 Score=28.20 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCEEEEecC-----CCeEEEEEcCCccccceeeeccC-CCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCc
Q 028806 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS-PNSVDAL-LKLDEDRVITGSENG----LISLVGILPNR 113 (203)
Q Consensus 48 ~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~ 113 (203)
++.+.+.|+. ...+..||+.+ ..+..+.... ....... ...++++.+.|+.++ .+.+||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLET--QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCC--CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5566666664 23577888763 3333332101 1111122 355677777777653 35678887654
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.39 E-value=15 Score=28.29 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=57.3
Q ss_pred EEEEEeeCCCEEEEecCC------CeEEEEEcCCccccceeeec--------------cCCCceeEE-EeeCCCEEEEEc
Q 028806 41 TSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
-+|++.+++.++++.-.+ ..|+.++.. +.....+.. .....+-.+ ++|+|..|+++.
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 477887788888876666 778888764 333333210 023345677 799999766654
Q ss_pred C-----CC--c-------EEE--EEccC-Cceeee--eccC------CCCceEEEEEeCCCCeEEE
Q 028806 100 E-----NG--L-------ISL--VGILP-NRIIQP--IAEH------SEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 100 ~-----d~--~-------i~~--~d~~~-~~~~~~--~~~~------~~~~i~~i~~~~~~~~l~~ 140 (203)
. ++ . +++ ||..+ +..... +... ....|..+.+-+++++|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 22 1 444 55444 322222 2222 1347889999999987763
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.11 E-value=24 Score=30.39 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.3
Q ss_pred EEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 19 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+++. |+++..+......+..+.|+.+. .|++...+|++++|++.
T Consensus 66 I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 6666654 45555554444578899998665 56666889999999985
No 467
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.03 E-value=14 Score=27.81 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeecc----CCCcee
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGL----SPNSVD 85 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~----~~~~v~ 85 (203)
...|++||..+.+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||+.. ..+..+... -.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45699999887665444445567899999986666666654 345688888863 344444330 135666
Q ss_pred EE-E-eeCCCEEE-EEc-CC--CcEEEEEcc
Q 028806 86 AL-L-KLDEDRVI-TGS-EN--GLISLVGIL 110 (203)
Q Consensus 86 ~~-~-~~~~~~l~-~~~-~d--~~i~~~d~~ 110 (203)
.+ + ..++..+. .|. .+ ..|..||-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 66 3 34444343 333 22 346667643
No 468
>PRK10115 protease 2; Provisional
Probab=84.95 E-value=24 Score=30.36 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=69.8
Q ss_pred CcccccCCEEEEEcCC------CeEEEEEcCCC--eEEEeecCCccceE-EEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELT-SVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------~~i~vw~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~~wd~~~ 68 (203)
++|++|++.|+.+..+ ..|+.+++.++ +....+........ .+..+.++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4689999877665432 46788888876 33333333223333 2233337776654332 45788888532
Q ss_pred c-cccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 69 F-KDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~-~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +.....+.. .......+.+.. ..++..+. ...|...++. .++....+.......|..+.+. .+..+++..
T Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPR-RKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred CCCCceEEEEC-CCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence 1 222222222 222223333333 33333332 2234444544 2222222333223357777776 324445555
Q ss_pred CCCcEEEEe
Q 028806 143 HDSMLKLWD 151 (203)
Q Consensus 143 ~d~~i~iwd 151 (203)
.++.-+++-
T Consensus 334 ~~g~~~l~~ 342 (686)
T PRK10115 334 QRGLTSLRQ 342 (686)
T ss_pred eCCEEEEEE
Confidence 566544443
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=15 Score=27.94 Aligned_cols=143 Identities=8% Similarity=0.029 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE---EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--eeeccCC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~ 81 (203)
+++...+..+.-++|.|+.+... +..+.. .+-..+ |.-.|++..++..+.-+.+.|+.....+.- .... ..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence 45666667777899999986532 222221 122233 344688988888666677889865433221 1111 12
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....+ .-.|++.+.++.++-+.+.|+... .+...-....+..++++..+++.-+++.. +..+.+-|..+..
T Consensus 172 ~d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 172 GDTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CCceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 222222 446788888889999999998653 22222222222257888887776666544 3446666766555
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=26 Score=30.21 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.0
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
.+|+..+|+.-...|.|.+.+....++...+......+-..|+|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688888888888889888888776666655543221123355665443
No 471
>PLN02193 nitrile-specifier protein
Probab=84.36 E-value=21 Score=29.11 Aligned_cols=145 Identities=9% Similarity=-0.090 Sum_probs=67.2
Q ss_pred CEEEEEcCC-----CeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccce
Q 028806 8 MKLLGTSGD-----GTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~ 74 (203)
++++.|+.+ +.+.+||+.+.+-...-.. ...+....+..-++++++.|+.++ .+..||+.+ ..+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t--~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD--KKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC--CEEE
Confidence 344555543 3577888877543221110 111111122223556666666543 466777653 2222
Q ss_pred eeeccC----CCc-eeEEEeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEe
Q 028806 75 RFVGLS----PNS-VDALLKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~~~----~~~-v~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.+.. . ... -..+...++++++.++.+ ..+.+||+.+.+-...-.. .......++ ..-++++++.|+
T Consensus 308 ~~~~-~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCST-PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCC-CCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 2211 0 000 111223466777776654 4588999887654322111 111111222 223566777777
Q ss_pred CC--------------CcEEEEeCCCcc
Q 028806 143 HD--------------SMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d--------------~~i~iwd~~~~~ 156 (203)
.. ..+.+||+.+..
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCE
Confidence 42 246777776553
No 472
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.16 E-value=17 Score=28.01 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=18.7
Q ss_pred CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecC
Q 028806 17 GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (203)
..+.+||..+.+-.. .+.. ...........++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF-LGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCC-CcCCCceEEEECCEEEEEeee
Confidence 457788877653321 2211 111111222346667777664
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.90 E-value=17 Score=27.76 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=66.4
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----cc-ccceeeec----cCCCceeEE-EeeCC------------CEE
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FK-DCSDRFVG----LSPNSVDAL-LKLDE------------DRV 95 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~-~~~~~~~~----~~~~~v~~~-~~~~~------------~~l 95 (203)
.-+.|+++|.+.+-++....+...+||... .. ..+..+.. ......+.+ |+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999888777777788999999851 11 11222221 011233444 54322 236
Q ss_pred EEEcCCCcEEEEEccCCce-----eeeeccCCCCceE-EEEEeC--CCCeEEEEe-CCCcEEEEeCC
Q 028806 96 ITGSENGLISLVGILPNRI-----IQPIAEHSEYPIE-SLALSH--DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 96 ~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~~i~-~i~~~~--~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+.++++|+|.-|...-+.. ...+.......|+ .+++.. .+.+|+.+. ..++|.+||-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 7889999999998543222 1222211122444 355543 356666555 78999999854
No 474
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.82 E-value=15 Score=27.05 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=62.2
Q ss_pred ccccCCEEEEEcC-C--CeEEEEEcCC----CeEEE---eecCCccceEEEEEeeCCCEEEEecCCC-eEEEEEcCCccc
Q 028806 3 FAADAMKLLGTSG-D--GTLSVCNLRK----NTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKD 71 (203)
Q Consensus 3 ~sp~~~~l~~~~~-d--~~i~vw~~~~----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~ 71 (203)
+-|||++|.+|+. + ..+++++... ..... .+. ....--.....|||+.|+.|+... +..+|.-.....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 5689999988865 2 3577777543 11110 111 122233455568999999988764 344444321111
Q ss_pred ccee--eec----cCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 72 CSDR--FVG----LSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 72 ~~~~--~~~----~~~~~v~-~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
.... +.. ......+ .+ .-|+|++++.+..+. .|||..+.+.+..+..
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 1111 110 0111222 22 489999999998764 3678877766655543
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.64 E-value=10 Score=25.03 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=60.5
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCcc-------ccceeeeccCCCceeEE-E---ee--CCCEEEEEcCCCcEEEEEcc
Q 028806 44 VLMKNGRKVVCGSQSGTVLLYSWGYFK-------DCSDRFVGLSPNSVDAL-L---KL--DEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~v~~~-~---~~--~~~~l~~~~~d~~i~~~d~~ 110 (203)
.|......|++++.-+.|.+++..... ..+..+. -...|+++ . .| ....|+.|+.. .|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 444444567777777888888764221 1223333 34566666 2 22 34556666654 58899998
Q ss_pred CCceeeeeccCCCCceEEEEEeC---CCCeEEEEeCCCcEEEEeCCC
Q 028806 111 PNRIIQPIAEHSEYPIESLALSH---DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+.--..+ + .+.++.+-. ...-|+..+.+..|.-||...
T Consensus 82 ~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 77666443333 3 477776632 223455555567777777543
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.64 E-value=13 Score=28.23 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcEEEEEccC--CceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCccc
Q 028806 91 DEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (203)
++++++.|+.+| |.+.++.. ++..+.+.. . +|.++...+..+.|++-+ ....++++++.....
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~--~-~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~ 77 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGR--R-SVTQIWVLEENNVLLMISGKKPQLYSHPLSALVE 77 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecCc--C-ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhh
Confidence 346899999999 45555554 334444432 2 799999999888777666 334599999976664
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.67 E-value=8.4 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=27.7
Q ss_pred CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 100 ~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..|.+..||+.+++..-.+.+- . --..|++++|+.+|+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 4567888999888765555444 2 357899999999776654
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.08 E-value=4.9 Score=34.46 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=48.8
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.++ -+|.+.-++.+..||.|.+|+..+.......... . |-..+.|...| |+++..|+.+.-|.-..--++
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~-p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqq 88 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-K-PKENLVFTNHG--LVTATSDRRALAWKEDGVVQQ 88 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-C-Cccceeeeccc--eEEEeccchhheeeccCcchh
Confidence 345566 5799999999999999999998765543333322 1 34556665554 666677888888865443333
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.71 E-value=18 Score=26.59 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=64.6
Q ss_pred EEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecC-C--CeEEEEEcCC-ccc-cce----eeeccCCCceeEEEe
Q 028806 20 SVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLYSWGY-FKD-CSD----RFVGLSPNSVDALLK 89 (203)
Q Consensus 20 ~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~wd~~~-~~~-~~~----~~~~~~~~~v~~~~~ 89 (203)
.+||+.+++... +.. ...-..+-.+.++|++|++|+. + ..+++++... ... .+. .+.. ..--.+...-
T Consensus 49 ~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 467777664422 221 1112223346789999998875 2 3577777532 001 111 1111 1111122246
Q ss_pred eCCCEEEEEcCCCc-EEEEEccC-C-cee-ee-ecc---CCCCceE-EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 90 LDEDRVITGSENGL-ISLVGILP-N-RII-QP-IAE---HSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 90 ~~~~~l~~~~~d~~-i~~~d~~~-~-~~~-~~-~~~---~~~~~i~-~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+|+.|+.|+.... .-+|.... . ... .. +.. ......+ .+...|+|+.++.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 78999999887643 33444321 1 111 11 110 0011111 356789999998887654 44565554
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.45 E-value=29 Score=31.16 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=64.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|..|-..++++|-. ..+++|++...++++..+ .-...|..+.+ .+..+++|...-.+.++-.+.....+..+..
T Consensus 940 Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 45566666666544 689999998766554433 22455667766 4567777776666666666544455555543
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEc
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
.....+++++.-+...++.+..-|.+.+.-+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0122355555566677777777777766554
No 481
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.36 E-value=25 Score=27.83 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=81.0
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEe----eCCCE--EEEec-CC---CeEEEEEcCCccccce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~~wd~~~~~~~~~ 74 (203)
|...+|+.....+-+.+||+... .++.+.. ++++.+..- -.++. |+.++ .+ ..|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 44567788888899999998754 4455542 345544432 23433 33333 32 4799998863222333
Q ss_pred eeec------cCCCceeEE--E-ee-CCC-EEEEEcCCCcEEEEEcc---CC----ceeeeeccCCCCceEEEEEeCCCC
Q 028806 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.. .....++.+ + +| +|. +++....+|.+..|-+. .+ +.+..+...+ .+..|.......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3221 011223444 3 44 455 44456678888888774 23 3456666553 588888888888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028806 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+|+.+-.+.-|.-|+.+
T Consensus 221 ~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred CEEEecCccEEEEEecC
Confidence 99999888777777765
No 482
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.28 E-value=6 Score=32.35 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
..+||+++..|-|++||--.-+....+.+....|..+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 458999999999999996544334455666778999999999998877654 467777764
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.97 E-value=31 Score=28.07 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.1
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
-...+.|+|.|++++|++--..|.|++++-.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 3457889999999877776546999998754
No 484
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=79.96 E-value=44 Score=29.86 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCeEEEeecCC--ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCC
Q 028806 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDE 92 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 92 (203)
.|.|.|+.+.....+..+..+ .+.+.++.. -+|++++.- +..|++|++.+ ++.++.-.. +..++..+ ..-.|
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~-~~eLr~e~~-~~~~~~aL~l~v~g 880 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTT-ERELRIECN-ISNPIIALDLQVKG 880 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccc-cceehhhhc-ccCCeEEEEEEecC
Confidence 466777766653222222111 233444332 156665544 46899999975 345555455 67778888 68889
Q ss_pred CEEEEEcCCCcEEEEEccC--CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 93 DRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 93 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..|++|..-+.+.+...+. |.....-+.-...+++++.+-.+..++ .+..+|.+++....
T Consensus 881 deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 881 DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence 9999999988887765443 333333222212267777776665554 44456777776544
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.86 E-value=25 Score=27.03 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=58.9
Q ss_pred ccceEEEEEeeCCCEEEEecCCCe------EEEEEcCCccc---cce-----eeeccCCC--------ceeEE-EeeCCC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGT------VLLYSWGYFKD---CSD-----RFVGLSPN--------SVDAL-LKLDED 93 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~------i~~wd~~~~~~---~~~-----~~~~~~~~--------~v~~~-~~~~~~ 93 (203)
-+.+..|.+.+++..+++.+.++. ++.+.+..... .+. .+.. ..+ ..-++ +.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRD-PDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccC-CCCCcCCcCCCChhHeEEecCCC
Confidence 356788889866666666666666 66555543110 000 1111 111 22345 556777
Q ss_pred EEEEEcCC------CcEEEEEccCCceeeeec--c------------CCCCceEEEEEeCCCCeEEEEe
Q 028806 94 RVITGSEN------GLISLVGILPNRIIQPIA--E------------HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 94 ~l~~~~~d------~~i~~~d~~~~~~~~~~~--~------------~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
++++.=.+ ..|..++.. |+.+..+. . .......+|+++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77666556 678888865 55443331 1 1123588999999999666554
No 486
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=79.80 E-value=12 Score=28.46 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=46.9
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC--ce--EEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--PI--ESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~i--~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.++ ..++|.+|+++-.-..|.+.+..+|+.+..+.+.... .. ...+|-.+-+++-....++.|.+||=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 3444 4567899999888889999999999999888665211 11 11334334445545567888999986
No 487
>PLN02153 epithiospecifier protein
Probab=79.64 E-value=26 Score=27.02 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=49.2
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEE--EeecC---CccceEEEEEeeCCCEEEEecCC-----------CeEEEEE
Q 028806 7 AMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEF---SEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~vw~~~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd 65 (203)
+++++.|+.+ ..+.+||+.+.+-. ..+.. ...+....+..-+++.++.|+.+ ..+.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 3445555542 35778888765432 11110 11222222223355666666643 2467788
Q ss_pred cCCccccceeeeccCC----Cce-eEEEeeCCCEEEEEcC-------------CCcEEEEEccCCcee
Q 028806 66 WGYFKDCSDRFVGLSP----NSV-DALLKLDEDRVITGSE-------------NGLISLVGILPNRII 115 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~----~~v-~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~ 115 (203)
..+ ..+..+.. .. ... .++...++++++.++. ...|.+||+.+.+-.
T Consensus 166 ~~~--~~W~~l~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IAD--GKWVQLPD-PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCC--CeEeeCCC-CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 753 23333222 11 000 1122345566555442 145888998776433
No 488
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=79.57 E-value=1.4 Score=31.37 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=14.2
Q ss_pred CCccccccccccccCCCCCCCCCCC
Q 028806 173 GDDMDVDNKVTSKSASKGHAGSSSN 197 (203)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
++|.|++.+.+.++|+++.+++.+.
T Consensus 257 d~d~dednk~~~rkrk~~~a~ksrk 281 (303)
T COG5129 257 DEDEDEDNKGKIRKRKTDDAKKSRK 281 (303)
T ss_pred ccccccccccchhhcccCchhhccC
Confidence 3344455556667777776655433
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.29 E-value=32 Score=31.10 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
++++..++++..||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67789999999999999999998755
No 490
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.56 E-value=15 Score=31.95 Aligned_cols=141 Identities=11% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe---EEEe-ecCCccceEEEEEeeCCCEEEEecCCCeEEE--------EEcCCccccce
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT---VQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLL--------YSWGYFKDCSD 74 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~--------wd~~~~~~~~~ 74 (203)
...+..|+.++.|-++.-..+. .... .......+.++.+++. .+..|.-||++-. ||.. +-.
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e----p~~ 620 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE----PNI 620 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC----Ccc
Confidence 3457788888999998866321 1111 1233455666666543 2333444554444 3332 111
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. ...++... +.. -++.++.+|.|.++...+......+..|- ...|++|....++-+++..+.| .++.++
T Consensus 621 ~~~~-g~lPvrsla~~e---d~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfh 695 (925)
T KOG3522|consen 621 SIPT-GSLPVRSLAFQE---DFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFH 695 (925)
T ss_pred cccc-CCccccchhhhh---ceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEec
Confidence 1122 34455555 322 25667788999999987654444443332 2379999998888777766544 566666
Q ss_pred CCCcccC
Q 028806 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
..+....
T Consensus 696 tetl~hl 702 (925)
T KOG3522|consen 696 TETLWHL 702 (925)
T ss_pred ccccCCc
Confidence 6665544
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=78.17 E-value=12 Score=22.52 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 125 PIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
.-..|.++|++++|.+++ ..+.|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 346799999999988776 67889999764
No 492
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=78.06 E-value=5.3 Score=18.17 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=12.9
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEE
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
...+++.++|+.+++=.....|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 345666666555555544555544
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=77.42 E-value=15 Score=28.02 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=43.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----eEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
.++|.+|+++-.-.+|.+.+..+++.+..+.+.... -...+|-.+-+++-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 357889999888889999999999999888665211 111333344455545567888889885
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=77.04 E-value=13 Score=32.30 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=43.1
Q ss_pred eEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccceeeecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 40 LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
-..+.|-|+|..+++...|| .+.++.-+ +.....+..+ -...+..+ |+-....++ ......|.+|-..+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN--GLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN--GLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccC--CcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccc
Confidence 34588999999999877554 35555432 1111111000 01112222 332222222 23445688887544
Q ss_pred CceeeeeccCCCCceEEEEEeCCC
Q 028806 112 NRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
..-.......-. .+.-+.|+|..
T Consensus 326 yhWYLK~e~~ip-~~s~vkwhpe~ 348 (1243)
T COG5290 326 YHWYLKVERQIP-GISYVKWHPEE 348 (1243)
T ss_pred eEEEEEEeecCC-Ccceeeecccc
Confidence 332211111111 46678898855
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.84 E-value=11 Score=32.57 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=42.5
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d 108 (203)
...++++.-+|.+..++.+..||+|++|++.. ........ ...+...+ |...| ++++..|+.+.-|-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~-r~qski~~--~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP-RRQSKICE--EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc-cchhhhhh--hcCCccceeeeccc--eEEEeccchhheee
Confidence 34567788889999999999999999999852 22222222 22233334 54333 55666666666664
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.35 E-value=7.1 Score=19.32 Aligned_cols=21 Identities=14% Similarity=-0.110 Sum_probs=15.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCC
Q 028806 134 DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+..|+.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999999864
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=73.83 E-value=62 Score=28.36 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=42.4
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee----ccC--------CC--C----ceEEEEEeCCCCeEEEEeCC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI----AEH--------SE--Y----PIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~--------~~--~----~i~~i~~~~~~~~l~~~~~d 144 (203)
|.++ ...-+.+++..-.||.|.++|..+.+.+... ... .+ . ++..++|||++.-++....+
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~ 341 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDED 341 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecC
Confidence 4444 2334567888899999999998765443222 000 00 1 23458899999888888888
Q ss_pred CcEE
Q 028806 145 SMLK 148 (203)
Q Consensus 145 ~~i~ 148 (203)
+.+.
T Consensus 342 ~~~~ 345 (753)
T PF11635_consen 342 GKTK 345 (753)
T ss_pred CCce
Confidence 8855
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.21 E-value=42 Score=29.79 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred CCeEEEEEcCCccccceee-eccCCCceeEE-EeeCCCEEEE-EcCCC-----cEEEEEccCC-ceeeeeccCCCCceEE
Q 028806 58 SGTVLLYSWGYFKDCSDRF-VGLSPNSVDAL-LKLDEDRVIT-GSENG-----LISLVGILPN-RIIQPIAEHSEYPIES 128 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~-~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~~i~~ 128 (203)
.+.|.+-|... ...+.+ .. +..++.+. |+|+|+.|+. .+.++ .|++-++.+. .-+-.+... ..+|..
T Consensus 328 ~~~L~~~D~dG--~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaipr 403 (912)
T TIGR02171 328 TGNLAYIDYTK--GASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPR 403 (912)
T ss_pred CCeEEEEecCC--CCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccc
Confidence 35788888763 233334 33 56777777 9999999998 44333 4888888753 333334443 225555
Q ss_pred EEEeCCCCe
Q 028806 129 LALSHDRKF 137 (203)
Q Consensus 129 i~~~~~~~~ 137 (203)
-....+|..
T Consensus 404 wrv~e~gdt 412 (912)
T TIGR02171 404 WRVLENGDT 412 (912)
T ss_pred eEecCCCCe
Confidence 555566644
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=72.43 E-value=62 Score=27.77 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc---------CCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC---eEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL---------RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG---TVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---~i~~wd~~ 67 (203)
+.|.++++.+++...+|.|.+|+. ........-..+..-|.....-....++++.+. .+ ..+++.+.
T Consensus 135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~ 214 (670)
T PF10395_consen 135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLS 214 (670)
T ss_pred EEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEec
Q ss_pred Cccccceeee---ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC-------CCCceEEEEEeCCCC
Q 028806 68 YFKDCSDRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-------SEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~ 136 (203)
.....+..+. . +....... |..+...++.- .+..|.+|++...+...++... .. .|.-...+|+.-
T Consensus 215 ~~~~~~~El~s~~~-e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~-~vSl~~~s~nRv 291 (670)
T PF10395_consen 215 NESSSIFELSSTIL-ENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDD-LVSLKPPSPNRV 291 (670)
T ss_pred cCCcceEEeehhee-ccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccccc-ceEeecCCCCeE
Q ss_pred eEEEEeCCCcEEEEeC
Q 028806 137 FLGSISHDSMLKLWDL 152 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~ 152 (203)
.| +.++.|++.|+
T Consensus 292 LL---s~~nkIyLld~ 304 (670)
T PF10395_consen 292 LL---SVNNKIYLLDL 304 (670)
T ss_pred EE---EcCCEEEEEee
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.37 E-value=20 Score=21.77 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 55 (203)
+|.+..||..+++....+.+ -.-.+.+++++++..|+.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 57788899888865444433 2346789999999876654
Done!