Query 028806
Match_columns 203
No_of_seqs 299 out of 1419
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.6E-31 5.4E-36 201.3 20.6 150 1-153 170-320 (321)
2 2ynn_A Coatomer subunit beta'; 100.0 5.1E-31 1.7E-35 197.0 22.1 154 1-157 19-175 (304)
3 3ow8_A WD repeat-containing pr 100.0 1.7E-30 6E-35 195.6 20.7 156 1-159 128-284 (321)
4 4gqb_B Methylosome protein 50; 100.0 3.7E-30 1.3E-34 195.6 20.3 156 1-158 133-293 (344)
5 1vyh_C Platelet-activating fac 100.0 2.2E-30 7.4E-35 201.1 18.8 155 1-158 114-269 (410)
6 4ery_A WD repeat-containing pr 100.0 1.4E-29 4.7E-34 189.5 21.8 154 1-157 29-183 (312)
7 3frx_A Guanine nucleotide-bind 100.0 1.6E-29 5.5E-34 190.1 21.3 154 1-158 71-231 (319)
8 2ynn_A Coatomer subunit beta'; 100.0 1.3E-29 4.5E-34 189.3 20.3 157 1-158 61-221 (304)
9 1got_B GT-beta; complex (GTP-b 100.0 1.8E-29 6.1E-34 191.3 19.8 149 1-151 190-340 (340)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-29 1.9E-33 189.0 20.5 152 1-154 67-225 (345)
11 2hes_X YDR267CP; beta-propelle 100.0 4.4E-29 1.5E-33 188.5 19.8 153 1-155 64-231 (330)
12 1vyh_C Platelet-activating fac 100.0 6.7E-29 2.3E-33 192.7 21.1 155 1-158 198-373 (410)
13 4ery_A WD repeat-containing pr 100.0 1.2E-28 4.2E-33 184.3 21.6 156 1-158 71-227 (312)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-29 1.4E-33 189.8 19.1 153 1-155 22-182 (345)
15 4h5i_A Guanine nucleotide-exch 100.0 5.7E-29 1.9E-33 190.4 19.5 152 1-156 139-345 (365)
16 1got_B GT-beta; complex (GTP-b 100.0 2.5E-28 8.4E-33 185.1 21.3 155 1-158 61-219 (340)
17 1erj_A Transcriptional repress 100.0 3.4E-28 1.2E-32 187.7 21.5 152 1-156 129-289 (393)
18 4gqb_B Methylosome protein 50; 100.0 2.7E-28 9.2E-33 185.3 18.9 156 1-159 88-251 (344)
19 2xzm_R RACK1; ribosome, transl 100.0 8.3E-28 2.8E-32 182.3 21.4 150 1-155 82-245 (343)
20 2pbi_B Guanine nucleotide-bind 100.0 9.4E-28 3.2E-32 182.9 21.8 155 1-157 160-318 (354)
21 3iz6_a 40S ribosomal protein R 100.0 2.8E-28 9.6E-33 187.4 18.2 152 2-156 212-377 (380)
22 2pbi_B Guanine nucleotide-bind 100.0 6.8E-28 2.3E-32 183.7 20.2 148 2-151 203-354 (354)
23 4g56_B MGC81050 protein; prote 100.0 3.9E-28 1.3E-32 185.3 18.8 156 1-159 145-306 (357)
24 2pm7_B Protein transport prote 100.0 1E-27 3.5E-32 178.5 19.5 154 1-156 15-191 (297)
25 1nr0_A Actin interacting prote 100.0 1E-27 3.6E-32 194.6 21.1 154 1-157 153-358 (611)
26 2ymu_A WD-40 repeat protein; u 100.0 1.1E-27 3.7E-32 192.5 19.5 145 1-151 432-577 (577)
27 2hes_X YDR267CP; beta-propelle 100.0 2.2E-27 7.5E-32 179.2 19.8 150 2-155 21-185 (330)
28 1nr0_A Actin interacting prote 100.0 2.2E-27 7.5E-32 192.7 21.0 154 1-157 65-273 (611)
29 2pm7_B Protein transport prote 100.0 3.7E-27 1.3E-31 175.4 20.4 153 1-155 59-239 (297)
30 3iz6_a 40S ribosomal protein R 100.0 3.8E-27 1.3E-31 181.1 20.2 156 1-157 163-332 (380)
31 1erj_A Transcriptional repress 100.0 3.1E-27 1.1E-31 182.3 19.3 153 1-155 212-390 (393)
32 4g56_B MGC81050 protein; prote 100.0 1.4E-27 4.7E-32 182.2 16.9 153 1-157 187-346 (357)
33 3dm0_A Maltose-binding peripla 100.0 3.3E-27 1.1E-31 194.0 19.8 155 1-159 436-597 (694)
34 3dwl_C Actin-related protein 2 100.0 3.8E-28 1.3E-32 185.7 13.0 153 1-155 17-178 (377)
35 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-27 3.2E-31 175.0 20.4 155 1-157 63-340 (351)
36 3vl1_A 26S proteasome regulato 100.0 2.8E-27 9.6E-32 183.2 17.7 156 1-157 145-325 (420)
37 3frx_A Guanine nucleotide-bind 100.0 1E-26 3.5E-31 174.8 19.6 154 1-158 23-189 (319)
38 2w18_A PALB2, fancn, partner a 100.0 7.1E-27 2.4E-31 174.6 18.3 148 2-152 185-355 (356)
39 3vl1_A 26S proteasome regulato 100.0 4.6E-27 1.6E-31 182.0 17.9 155 2-158 104-282 (420)
40 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-26 4.9E-31 174.0 19.5 155 1-157 17-252 (351)
41 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-27 1.6E-31 181.6 17.0 155 1-157 87-257 (402)
42 3bg1_A Protein SEC13 homolog; 99.9 3.1E-27 1E-31 177.4 14.0 153 1-155 19-199 (316)
43 3dwl_C Actin-related protein 2 99.9 1.8E-27 6.2E-32 182.0 12.9 155 1-157 61-239 (377)
44 2ymu_A WD-40 repeat protein; u 99.9 2.5E-26 8.6E-31 184.6 19.7 147 1-153 391-538 (577)
45 2xzm_R RACK1; ribosome, transl 99.9 8.7E-26 3E-30 171.2 21.2 147 4-154 35-203 (343)
46 4e54_B DNA damage-binding prot 99.9 1.6E-26 5.6E-31 180.5 17.2 155 1-159 125-287 (435)
47 3mkq_A Coatomer beta'-subunit; 99.9 3.9E-26 1.3E-30 190.0 20.4 155 1-158 19-176 (814)
48 1sq9_A Antiviral protein SKI8; 99.9 7.1E-26 2.4E-30 174.0 19.8 152 1-155 192-396 (397)
49 2pm9_A Protein WEB1, protein t 99.9 4E-26 1.4E-30 176.3 18.4 157 1-159 171-342 (416)
50 3jrp_A Fusion protein of prote 99.9 5.9E-26 2E-30 173.0 18.7 154 1-156 17-193 (379)
51 4e54_B DNA damage-binding prot 99.9 2E-26 6.9E-31 179.9 16.3 153 1-157 170-330 (435)
52 3bg1_A Protein SEC13 homolog; 99.9 1.3E-26 4.5E-31 173.9 14.5 153 1-155 63-248 (316)
53 3ei3_B DNA damage-binding prot 99.9 9.8E-26 3.4E-30 172.9 19.5 152 1-156 79-238 (383)
54 3sfz_A APAF-1, apoptotic pepti 99.9 7.9E-26 2.7E-30 195.8 21.2 154 1-157 621-777 (1249)
55 3zwl_B Eukaryotic translation 99.9 2E-25 6.8E-30 169.4 21.0 155 1-158 38-253 (369)
56 4aez_A CDC20, WD repeat-contai 99.9 1.6E-25 5.6E-30 173.0 20.6 155 1-159 140-298 (401)
57 1gxr_A ESG1, transducin-like e 99.9 9.4E-26 3.2E-30 169.3 18.4 155 1-158 57-218 (337)
58 4ggc_A P55CDC, cell division c 99.9 4.7E-25 1.6E-29 164.5 22.0 154 1-156 73-317 (318)
59 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-25 3.5E-30 176.6 19.0 155 1-158 108-275 (450)
60 1k8k_C P40, ARP2/3 complex 41 99.9 2.1E-25 7.4E-30 169.7 20.2 151 1-154 14-173 (372)
61 3ei3_B DNA damage-binding prot 99.9 2.9E-25 9.8E-30 170.3 20.9 152 1-158 124-286 (383)
62 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-26 4.6E-31 184.6 13.9 151 1-155 272-429 (524)
63 1r5m_A SIR4-interacting protei 99.9 6.9E-26 2.4E-30 174.9 17.2 150 1-153 253-424 (425)
64 1gxr_A ESG1, transducin-like e 99.9 4E-25 1.4E-29 165.9 20.9 153 1-157 103-258 (337)
65 2xyi_A Probable histone-bindin 99.9 1.3E-25 4.3E-30 175.2 18.6 156 1-158 237-414 (430)
66 3jrp_A Fusion protein of prote 99.9 4.5E-25 1.5E-29 168.1 21.1 154 1-156 61-242 (379)
67 4aow_A Guanine nucleotide-bind 99.9 4.5E-25 1.5E-29 166.1 20.8 150 2-156 178-339 (340)
68 3dw8_B Serine/threonine-protei 99.9 1E-25 3.5E-30 175.7 17.7 154 1-157 34-261 (447)
69 3zwl_B Eukaryotic translation 99.9 3.7E-25 1.3E-29 167.9 20.4 155 1-159 181-351 (369)
70 1k8k_C P40, ARP2/3 complex 41 99.9 2.7E-25 9.3E-30 169.2 19.6 156 1-158 58-237 (372)
71 2aq5_A Coronin-1A; WD40 repeat 99.9 1E-25 3.5E-30 174.0 17.3 155 2-158 41-211 (402)
72 3lrv_A PRE-mRNA-splicing facto 99.9 4.7E-25 1.6E-29 167.1 20.5 153 1-159 82-249 (343)
73 2oaj_A Protein SNI1; WD40 repe 99.9 5.5E-26 1.9E-30 191.5 16.3 149 1-152 441-659 (902)
74 3i2n_A WD repeat-containing pr 99.9 3.2E-25 1.1E-29 167.8 19.0 151 2-156 175-355 (357)
75 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-25 9.9E-30 168.3 18.2 154 1-156 131-294 (343)
76 2j04_B YDR362CP, TAU91; beta p 99.9 8.1E-26 2.8E-30 180.1 15.5 155 1-157 213-389 (524)
77 3k26_A Polycomb protein EED; W 99.9 9.4E-26 3.2E-30 171.1 14.8 152 1-157 75-263 (366)
78 3k26_A Polycomb protein EED; W 99.9 5E-25 1.7E-29 167.1 18.0 154 1-157 24-195 (366)
79 3mmy_A MRNA export factor; mRN 99.9 7.2E-25 2.5E-29 166.2 18.8 111 1-114 45-163 (368)
80 3v7d_B Cell division control p 99.9 2.1E-24 7.2E-29 169.3 21.7 155 1-159 168-346 (464)
81 4a11_B DNA excision repair pro 99.9 1.9E-24 6.5E-29 166.2 20.8 152 6-159 155-370 (408)
82 3dm0_A Maltose-binding peripla 99.9 1.4E-24 4.9E-29 178.4 20.8 155 1-158 388-554 (694)
83 3mkq_A Coatomer beta'-subunit; 99.9 5.6E-25 1.9E-29 183.1 18.5 157 1-158 61-221 (814)
84 3dw8_B Serine/threonine-protei 99.9 6.3E-25 2.2E-29 171.2 17.6 155 1-158 99-320 (447)
85 3odt_A Protein DOA1; ubiquitin 99.9 3.1E-24 1.1E-28 159.6 20.5 150 2-159 149-301 (313)
86 4aez_A CDC20, WD repeat-contai 99.9 1.5E-24 5.3E-29 167.5 19.2 155 1-159 223-385 (401)
87 2xyi_A Probable histone-bindin 99.9 1.8E-24 6.1E-29 168.7 18.9 153 1-155 187-354 (430)
88 2oaj_A Protein SNI1; WD40 repe 99.9 7.3E-25 2.5E-29 184.6 18.0 152 1-157 64-245 (902)
89 1r5m_A SIR4-interacting protei 99.9 3.7E-24 1.3E-28 165.2 20.4 154 1-158 114-323 (425)
90 3gre_A Serine/threonine-protei 99.9 3.8E-25 1.3E-29 172.4 14.9 157 1-159 69-250 (437)
91 4gga_A P55CDC, cell division c 99.9 2E-24 7E-29 167.8 19.0 153 2-158 237-399 (420)
92 2j04_A TAU60, YPL007P, hypothe 99.9 9.2E-25 3.1E-29 172.7 16.7 147 1-157 91-257 (588)
93 2pm9_A Protein WEB1, protein t 99.9 1.1E-24 3.8E-29 168.2 16.7 154 1-155 73-250 (416)
94 3gre_A Serine/threonine-protei 99.9 1.4E-24 5E-29 169.1 16.0 155 3-160 178-365 (437)
95 3i2n_A WD repeat-containing pr 99.9 1.7E-24 5.8E-29 163.8 15.8 153 2-158 124-295 (357)
96 3jro_A Fusion protein of prote 99.9 5.4E-24 1.8E-28 176.6 20.1 154 1-156 59-240 (753)
97 3vu4_A KMHSV2; beta-propeller 99.9 1.2E-23 4E-28 160.3 20.4 152 2-156 65-273 (355)
98 1pgu_A Actin interacting prote 99.9 7.4E-24 2.5E-28 171.0 20.1 159 1-160 24-244 (615)
99 3jro_A Fusion protein of prote 99.9 2.1E-24 7.1E-29 179.0 17.2 154 1-156 15-191 (753)
100 1sq9_A Antiviral protein SKI8; 99.9 2.4E-24 8.1E-29 165.5 15.9 155 1-158 68-271 (397)
101 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.3E-24 2.2E-28 166.4 18.4 149 1-152 155-337 (450)
102 4aow_A Guanine nucleotide-bind 99.9 1.6E-23 5.6E-28 157.5 19.8 156 1-158 92-250 (340)
103 1pgu_A Actin interacting prote 99.9 5E-24 1.7E-28 171.9 17.9 145 7-154 456-614 (615)
104 3mmy_A MRNA export factor; mRN 99.9 3.6E-24 1.2E-28 162.4 15.8 151 1-155 92-347 (368)
105 4gq1_A NUP37; propeller, trans 99.9 4.5E-24 1.5E-28 164.7 16.3 154 3-159 97-291 (393)
106 4ggc_A P55CDC, cell division c 99.9 5.1E-23 1.7E-27 153.5 21.3 152 1-158 31-185 (318)
107 4a11_B DNA excision repair pro 99.9 1.1E-23 3.7E-28 161.9 17.3 152 1-156 49-220 (408)
108 3v7d_B Cell division control p 99.9 4.8E-23 1.7E-27 161.6 20.4 151 2-159 275-426 (464)
109 1yfq_A Cell cycle arrest prote 99.9 1.3E-23 4.6E-28 158.2 16.1 147 1-154 17-179 (342)
110 3odt_A Protein DOA1; ubiquitin 99.9 1.4E-22 4.7E-27 150.7 19.9 149 1-156 24-176 (313)
111 1yfq_A Cell cycle arrest prote 99.9 1.3E-23 4.5E-28 158.2 14.5 154 1-159 107-287 (342)
112 3sfz_A APAF-1, apoptotic pepti 99.9 6.3E-23 2.1E-27 177.7 20.4 155 1-158 663-875 (1249)
113 4gga_A P55CDC, cell division c 99.9 1.2E-22 4.2E-27 157.8 20.0 154 1-158 153-314 (420)
114 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.1E-22 7.2E-27 157.4 20.0 148 2-158 124-272 (445)
115 1p22_A F-BOX/WD-repeat protein 99.9 3.1E-22 1.1E-26 156.1 20.0 148 2-158 138-289 (435)
116 4gq1_A NUP37; propeller, trans 99.9 2.9E-23 1E-27 160.2 14.0 151 6-158 155-352 (393)
117 2j04_A TAU60, YPL007P, hypothe 99.9 9E-23 3.1E-27 161.4 16.8 145 1-153 135-296 (588)
118 3vu4_A KMHSV2; beta-propeller 99.9 2E-22 6.8E-27 153.6 17.1 149 8-157 148-339 (355)
119 1p22_A F-BOX/WD-repeat protein 99.9 1.7E-22 5.7E-27 157.7 16.3 146 5-159 264-419 (435)
120 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.4E-21 8.3E-26 151.4 21.1 144 6-158 168-312 (445)
121 2w18_A PALB2, fancn, partner a 99.9 2.2E-21 7.4E-26 145.1 18.3 141 15-160 155-320 (356)
122 2oit_A Nucleoporin 214KDA; NH2 99.9 5.6E-22 1.9E-26 154.9 15.6 153 1-156 98-280 (434)
123 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-22 6.4E-27 157.6 11.5 150 1-153 42-222 (434)
124 3bws_A Protein LP49; two-domai 99.9 3.9E-21 1.3E-25 149.4 18.5 153 1-157 128-295 (433)
125 1l0q_A Surface layer protein; 99.9 1.1E-20 3.9E-25 144.9 20.1 152 1-158 37-193 (391)
126 1l0q_A Surface layer protein; 99.9 3E-20 1E-24 142.6 20.4 152 1-158 121-279 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.6E-19 5.5E-24 140.3 19.3 152 1-158 184-348 (415)
128 3bws_A Protein LP49; two-domai 99.8 1.4E-19 4.7E-24 140.6 17.9 153 1-158 175-338 (433)
129 4h5i_A Guanine nucleotide-exch 99.8 2.8E-20 9.5E-25 142.2 12.5 109 1-111 225-343 (365)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.2E-18 4E-23 135.4 17.7 149 1-156 228-389 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.8 1.1E-18 3.7E-23 144.2 15.9 141 1-145 42-230 (741)
132 1xfd_A DIP, dipeptidyl aminope 99.8 7.2E-19 2.5E-23 144.9 11.7 140 1-144 22-193 (723)
133 2ojh_A Uncharacterized protein 99.8 8.1E-18 2.8E-22 123.5 15.7 153 1-157 90-261 (297)
134 1nir_A Nitrite reductase; hemo 99.8 3.7E-17 1.3E-21 131.0 20.3 151 2-156 144-313 (543)
135 3vgz_A Uncharacterized protein 99.8 9.9E-17 3.4E-21 121.1 20.5 156 1-158 94-266 (353)
136 2ojh_A Uncharacterized protein 99.8 2.2E-17 7.6E-22 121.2 15.4 149 1-153 47-203 (297)
137 1pby_B Quinohemoprotein amine 99.8 3.8E-17 1.3E-21 122.4 17.0 150 1-158 87-314 (337)
138 3vgz_A Uncharacterized protein 99.8 9.8E-17 3.4E-21 121.1 18.4 154 1-158 146-307 (353)
139 1nir_A Nitrite reductase; hemo 99.8 5.6E-17 1.9E-21 130.0 17.8 153 1-158 184-359 (543)
140 1ri6_A Putative isomerase YBHE 99.8 9.8E-17 3.4E-21 120.4 17.5 151 1-154 43-209 (343)
141 3u4y_A Uncharacterized protein 99.7 1.5E-16 5.1E-21 119.3 17.2 153 1-157 89-255 (331)
142 3u4y_A Uncharacterized protein 99.7 3.7E-16 1.3E-20 117.2 19.0 148 2-154 4-160 (331)
143 1xfd_A DIP, dipeptidyl aminope 99.7 2.1E-17 7.1E-22 136.2 11.7 153 1-157 66-292 (723)
144 2ecf_A Dipeptidyl peptidase IV 99.7 4.6E-17 1.6E-21 134.5 13.7 151 1-157 114-324 (741)
145 1z68_A Fibroblast activation p 99.7 3.3E-17 1.1E-21 135.1 12.5 139 1-144 21-189 (719)
146 1k32_A Tricorn protease; prote 99.7 8.1E-17 2.8E-21 137.9 14.6 149 1-156 301-463 (1045)
147 3hfq_A Uncharacterized protein 99.7 8.7E-16 3E-20 116.1 16.9 153 1-154 45-218 (347)
148 1k32_A Tricorn protease; prote 99.7 5.9E-16 2E-20 132.6 17.3 149 1-155 343-503 (1045)
149 2z3z_A Dipeptidyl aminopeptida 99.7 2.7E-16 9.3E-21 129.3 14.7 149 1-155 87-294 (706)
150 3scy_A Hypothetical bacterial 99.7 2.1E-15 7.2E-20 114.6 18.6 150 1-153 160-336 (361)
151 3hfq_A Uncharacterized protein 99.7 3.1E-15 1.1E-19 113.0 19.1 154 1-156 146-321 (347)
152 3o4h_A Acylamino-acid-releasin 99.7 2.1E-16 7.1E-21 127.5 13.3 143 2-152 116-274 (582)
153 1jmx_B Amine dehydrogenase; ox 99.7 3.8E-16 1.3E-20 117.6 13.4 149 1-159 97-330 (349)
154 1jmx_B Amine dehydrogenase; ox 99.7 1.1E-15 3.8E-20 115.0 16.0 151 1-158 5-179 (349)
155 3o4h_A Acylamino-acid-releasin 99.7 6.2E-16 2.1E-20 124.7 14.5 151 1-158 27-231 (582)
156 1ri6_A Putative isomerase YBHE 99.7 9.6E-16 3.3E-20 115.0 14.5 141 9-154 7-160 (343)
157 1pby_B Quinohemoprotein amine 99.7 4.1E-15 1.4E-19 111.3 16.8 145 8-158 2-167 (337)
158 2z3z_A Dipeptidyl aminopeptida 99.7 3.6E-15 1.2E-19 122.6 17.6 154 1-156 186-393 (706)
159 1z68_A Fibroblast activation p 99.7 1.3E-16 4.4E-21 131.5 9.1 153 1-158 65-295 (719)
160 4a5s_A Dipeptidyl peptidase 4 99.7 1.4E-15 4.7E-20 126.0 15.0 136 1-143 22-190 (740)
161 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.3E-15 1.5E-19 113.3 14.5 152 1-153 45-223 (365)
162 1jof_A Carboxy-CIS,CIS-muconat 99.6 7.6E-14 2.6E-18 106.4 19.4 153 1-153 88-290 (365)
163 3scy_A Hypothetical bacterial 99.6 1.1E-13 3.9E-18 105.0 20.2 153 1-155 55-243 (361)
164 3pe7_A Oligogalacturonate lyas 99.6 3.9E-14 1.3E-18 108.3 17.0 151 2-156 42-227 (388)
165 4a5s_A Dipeptidyl peptidase 4 99.6 1.2E-14 4.1E-19 120.4 14.1 150 2-156 68-296 (740)
166 3azo_A Aminopeptidase; POP fam 99.6 8.2E-15 2.8E-19 119.7 12.7 152 1-155 135-326 (662)
167 1q7f_A NHL, brain tumor CG1071 99.6 4.7E-13 1.6E-17 98.4 19.5 150 1-156 126-282 (286)
168 3pe7_A Oligogalacturonate lyas 99.6 1.9E-13 6.4E-18 104.5 17.5 153 1-157 86-276 (388)
169 3azo_A Aminopeptidase; POP fam 99.6 5.4E-14 1.8E-18 114.9 14.2 150 4-156 87-276 (662)
170 3fvz_A Peptidyl-glycine alpha- 99.6 1E-12 3.6E-17 98.8 19.4 154 1-156 29-229 (329)
171 2xdw_A Prolyl endopeptidase; a 99.5 3.7E-13 1.3E-17 111.1 15.5 153 1-156 130-322 (710)
172 3c5m_A Oligogalacturonate lyas 99.5 1.2E-13 4E-18 105.7 10.1 153 2-157 87-276 (396)
173 3fvz_A Peptidyl-glycine alpha- 99.5 1.4E-12 4.7E-17 98.1 15.5 151 1-154 148-322 (329)
174 2oiz_A Aromatic amine dehydrog 99.5 2.6E-12 9E-17 97.9 17.0 64 88-155 261-335 (361)
175 1xip_A Nucleoporin NUP159; bet 99.5 5.5E-13 1.9E-17 102.1 11.7 139 1-156 43-193 (388)
176 2dg1_A DRP35, lactonase; beta 99.5 7.2E-12 2.5E-16 94.0 17.8 150 1-154 50-213 (333)
177 2xdw_A Prolyl endopeptidase; a 99.5 1.1E-11 3.9E-16 102.2 20.1 155 1-156 176-370 (710)
178 3c5m_A Oligogalacturonate lyas 99.4 7.1E-13 2.4E-17 101.4 10.8 152 1-156 41-227 (396)
179 3no2_A Uncharacterized protein 99.4 5.6E-12 1.9E-16 92.7 14.7 145 5-156 3-156 (276)
180 1q7f_A NHL, brain tumor CG1071 99.4 3.8E-11 1.3E-15 88.1 19.1 148 2-154 83-238 (286)
181 2bkl_A Prolyl endopeptidase; m 99.4 1.2E-12 4E-17 107.9 11.6 150 1-156 126-306 (695)
182 1qks_A Cytochrome CD1 nitrite 99.4 5.2E-11 1.8E-15 95.8 20.6 150 5-157 165-376 (567)
183 2gop_A Trilobed protease; beta 99.4 6E-12 2.1E-16 94.8 14.3 140 1-154 109-291 (347)
184 3no2_A Uncharacterized protein 99.4 1.2E-11 4E-16 91.0 15.4 148 2-157 43-198 (276)
185 3e5z_A Putative gluconolactona 99.4 2.1E-11 7.1E-16 90.1 16.8 147 1-153 33-201 (296)
186 1rwi_B Serine/threonine-protei 99.4 1.5E-11 5.2E-16 89.4 15.8 154 1-157 113-267 (270)
187 2gop_A Trilobed protease; beta 99.4 1.4E-11 4.9E-16 92.7 15.1 139 1-151 64-250 (347)
188 3dsm_A Uncharacterized protein 99.4 6.1E-11 2.1E-15 89.2 17.5 150 1-157 89-256 (328)
189 1rwi_B Serine/threonine-protei 99.4 9.2E-11 3.1E-15 85.2 17.4 152 1-156 72-224 (270)
190 2oiz_A Aromatic amine dehydrog 99.4 4.1E-11 1.4E-15 91.3 16.1 143 5-154 13-182 (361)
191 2dg1_A DRP35, lactonase; beta 99.3 4E-11 1.4E-15 89.9 14.6 150 1-155 11-172 (333)
192 1yr2_A Prolyl oligopeptidase; 99.3 2E-11 6.7E-16 101.3 13.8 150 2-155 169-351 (741)
193 1xip_A Nucleoporin NUP159; bet 99.3 2.9E-11 1E-15 92.5 12.8 128 1-142 93-232 (388)
194 3e5z_A Putative gluconolactona 99.3 2.5E-10 8.4E-15 84.3 17.5 149 1-158 120-290 (296)
195 2mad_H Methylamine dehydrogena 99.3 4E-10 1.4E-14 86.3 19.1 156 1-160 71-356 (373)
196 2bkl_A Prolyl endopeptidase; m 99.3 1.7E-10 5.7E-15 95.1 18.1 148 1-153 173-348 (695)
197 2z2n_A Virginiamycin B lyase; 99.2 3.2E-09 1.1E-13 77.9 19.7 150 1-156 62-214 (299)
198 1qks_A Cytochrome CD1 nitrite 99.2 3.9E-09 1.3E-13 84.9 20.9 152 1-154 202-421 (567)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 7.2E-10 2.4E-14 82.2 15.4 150 1-154 122-299 (314)
200 1yr2_A Prolyl oligopeptidase; 99.2 1.7E-09 5.7E-14 89.8 19.0 148 1-152 214-391 (741)
201 2z2n_A Virginiamycin B lyase; 99.2 4.9E-09 1.7E-13 76.9 19.7 147 1-153 104-254 (299)
202 3dsm_A Uncharacterized protein 99.2 1.6E-09 5.6E-14 81.3 16.9 145 7-158 54-216 (328)
203 3hrp_A Uncharacterized protein 99.2 1.8E-09 6.1E-14 83.6 17.0 150 1-154 136-298 (409)
204 3sjl_D Methylamine dehydrogena 99.2 1.6E-09 5.5E-14 82.7 16.3 144 3-154 40-208 (386)
205 2hz6_A Endoplasmic reticulum t 99.2 5.3E-12 1.8E-16 96.6 1.8 144 6-158 8-153 (369)
206 3iuj_A Prolyl endopeptidase; h 99.1 1E-09 3.6E-14 90.4 14.6 151 2-157 135-317 (693)
207 2qc5_A Streptogramin B lactona 99.1 2.7E-08 9.1E-13 73.0 19.7 147 1-153 25-175 (300)
208 3dr2_A Exported gluconolactona 99.1 4.5E-09 1.5E-13 78.0 15.3 145 2-154 51-224 (305)
209 2mad_H Methylamine dehydrogena 99.1 2E-08 6.8E-13 76.8 18.9 143 4-157 29-198 (373)
210 2qc5_A Streptogramin B lactona 99.1 3.4E-08 1.2E-12 72.4 19.5 146 2-153 68-217 (300)
211 3g4e_A Regucalcin; six bladed 99.1 3.8E-09 1.3E-13 78.2 14.4 139 1-142 103-260 (297)
212 3iuj_A Prolyl endopeptidase; h 99.1 1.1E-08 3.7E-13 84.4 17.8 151 1-156 180-361 (693)
213 3g4e_A Regucalcin; six bladed 99.1 3.7E-08 1.3E-12 72.8 19.1 152 1-157 59-232 (297)
214 3hrp_A Uncharacterized protein 99.1 1.3E-08 4.5E-13 78.8 16.8 151 1-156 176-356 (409)
215 1mda_H Methylamine dehydrogena 99.0 2E-09 6.8E-14 82.0 10.8 159 1-161 70-353 (368)
216 3c75_H MADH, methylamine dehyd 99.0 3.4E-08 1.2E-12 76.6 17.3 158 1-160 182-408 (426)
217 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.5E-08 1.5E-12 72.4 17.4 150 1-156 76-258 (314)
218 2ghs_A AGR_C_1268P; regucalcin 99.0 2.1E-07 7.1E-12 69.8 19.0 146 1-154 95-260 (326)
219 2iwa_A Glutamine cyclotransfer 98.9 1.7E-07 5.8E-12 68.1 17.3 154 1-160 26-187 (266)
220 3dr2_A Exported gluconolactona 98.9 5E-08 1.7E-12 72.4 14.0 143 1-151 136-303 (305)
221 3c75_H MADH, methylamine dehyd 98.9 1E-07 3.6E-12 73.9 15.5 113 5-121 82-219 (426)
222 3sjl_D Methylamine dehydrogena 98.9 4.1E-08 1.4E-12 75.0 12.9 151 1-156 83-258 (386)
223 2ghs_A AGR_C_1268P; regucalcin 98.9 2.1E-07 7E-12 69.8 16.7 135 2-142 140-290 (326)
224 1yiq_A Quinohemoprotein alcoho 98.9 1.7E-07 5.8E-12 77.2 16.5 154 2-158 241-509 (689)
225 2hz6_A Endoplasmic reticulum t 98.8 1.3E-10 4.4E-15 88.8 -2.0 144 4-157 46-195 (369)
226 2qe8_A Uncharacterized protein 98.8 3.4E-07 1.1E-11 69.1 16.8 149 1-151 22-223 (343)
227 2ece_A 462AA long hypothetical 98.8 3.4E-07 1.2E-11 70.9 16.5 145 5-152 93-287 (462)
228 2ece_A 462AA long hypothetical 98.8 2.8E-07 9.7E-12 71.4 16.1 149 2-153 144-351 (462)
229 2qe8_A Uncharacterized protein 98.8 1.3E-07 4.3E-12 71.4 13.7 152 1-155 72-279 (343)
230 3nol_A Glutamine cyclotransfer 98.8 5.8E-07 2E-11 64.8 15.6 152 2-160 49-207 (262)
231 1kb0_A Quinohemoprotein alcoho 98.8 3.3E-07 1.1E-11 75.4 15.4 155 2-160 249-513 (677)
232 3nok_A Glutaminyl cyclase; bet 98.8 5.5E-07 1.9E-11 65.0 14.5 147 7-160 65-216 (268)
233 1npe_A Nidogen, entactin; glyc 98.8 6.4E-06 2.2E-10 59.7 20.6 151 1-155 41-199 (267)
234 1fwx_A Nitrous oxide reductase 98.7 5.9E-07 2E-11 71.8 15.3 144 5-154 145-361 (595)
235 1kb0_A Quinohemoprotein alcoho 98.7 1.5E-06 5.2E-11 71.5 16.6 144 8-154 328-567 (677)
236 3mbr_X Glutamine cyclotransfer 98.7 1E-05 3.5E-10 57.8 18.3 152 2-160 27-185 (243)
237 3tc9_A Hypothetical hydrolase; 98.6 6.3E-06 2.2E-10 64.2 18.5 148 1-153 142-300 (430)
238 2iwa_A Glutamine cyclotransfer 98.6 6.5E-06 2.2E-10 59.8 16.9 145 6-155 74-238 (266)
239 1fwx_A Nitrous oxide reductase 98.6 3E-06 1E-10 67.8 15.8 147 5-156 99-310 (595)
240 1yiq_A Quinohemoprotein alcoho 98.6 2.3E-06 7.7E-11 70.6 15.4 131 9-141 321-536 (689)
241 1npe_A Nidogen, entactin; glyc 98.5 4.5E-05 1.5E-09 55.1 19.3 151 1-158 84-242 (267)
242 2xe4_A Oligopeptidase B; hydro 98.5 2.8E-06 9.6E-11 70.7 14.4 151 2-154 180-354 (751)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.9E-05 6.5E-10 60.0 17.9 146 6-158 52-211 (376)
244 2fp8_A Strictosidine synthase; 98.5 1.7E-05 5.7E-10 59.1 16.7 149 1-154 24-216 (322)
245 1kv9_A Type II quinohemoprotei 98.4 1E-05 3.5E-10 66.5 15.2 153 2-158 236-492 (668)
246 1mda_H Methylamine dehydrogena 98.4 1.8E-06 6E-11 65.8 9.7 125 18-154 47-194 (368)
247 3nol_A Glutamine cyclotransfer 98.4 3.3E-05 1.1E-09 55.7 15.4 134 5-143 94-244 (262)
248 3q7m_A Lipoprotein YFGL, BAMB; 98.4 4.1E-05 1.4E-09 58.1 17.0 136 7-151 239-375 (376)
249 3hxj_A Pyrrolo-quinoline quino 98.4 1E-05 3.5E-10 60.1 13.2 136 7-153 107-243 (330)
250 3nok_A Glutaminyl cyclase; bet 98.4 6.3E-05 2.2E-09 54.3 16.5 133 5-142 103-253 (268)
251 3hxj_A Pyrrolo-quinoline quino 98.3 1.4E-05 4.9E-10 59.2 12.8 140 5-156 186-326 (330)
252 3mbr_X Glutamine cyclotransfer 98.3 0.00017 5.8E-09 51.5 17.5 132 7-142 74-222 (243)
253 3qqz_A Putative uncharacterize 98.3 0.00032 1.1E-08 50.6 18.3 153 1-155 32-205 (255)
254 1ijq_A LDL receptor, low-densi 98.3 0.00055 1.9E-08 50.9 20.4 150 1-154 35-195 (316)
255 4hw6_A Hypothetical protein, I 98.3 0.00015 5.3E-09 56.4 17.7 148 1-153 144-303 (433)
256 2ad6_A Methanol dehydrogenase 98.2 9.5E-05 3.2E-09 59.7 16.6 136 18-158 273-498 (571)
257 2p9w_A MAL S 1 allergenic prot 98.2 0.00012 4.2E-09 54.5 15.8 151 2-154 19-215 (334)
258 3kya_A Putative phosphatase; s 98.2 0.00023 7.7E-09 56.2 18.1 150 1-152 144-339 (496)
259 2fp8_A Strictosidine synthase; 98.2 0.0001 3.5E-09 54.8 15.5 135 17-156 165-315 (322)
260 3v64_C Agrin; beta propeller, 98.2 0.00062 2.1E-08 51.4 19.6 151 1-155 78-235 (349)
261 2p4o_A Hypothetical protein; p 98.2 0.00048 1.6E-08 50.8 18.6 148 1-154 37-198 (306)
262 2ad6_A Methanol dehydrogenase 98.2 6.9E-05 2.4E-09 60.5 14.9 128 9-139 318-522 (571)
263 3p5b_L Low density lipoprotein 98.2 0.0011 3.8E-08 51.0 20.5 151 1-155 117-278 (400)
264 3v65_B Low-density lipoprotein 98.2 0.00046 1.6E-08 52.9 18.3 151 1-155 121-278 (386)
265 2xe4_A Oligopeptidase B; hydro 98.2 0.00024 8.1E-09 59.2 17.8 149 1-152 226-398 (751)
266 1flg_A Protein (quinoprotein e 98.1 0.00017 5.8E-09 58.3 15.7 82 58-142 465-548 (582)
267 3qqz_A Putative uncharacterize 98.1 0.00074 2.5E-08 48.7 17.3 150 1-152 75-251 (255)
268 1flg_A Protein (quinoprotein e 98.1 0.00019 6.6E-09 58.0 15.5 56 101-158 465-520 (582)
269 3amr_A 3-phytase; beta-propell 98.0 0.0018 6E-08 48.8 18.7 143 6-153 39-209 (355)
270 1w6s_A Methanol dehydrogenase 98.0 0.00048 1.7E-08 55.8 16.5 56 101-158 452-507 (599)
271 1kv9_A Type II quinohemoprotei 98.0 0.00024 8.2E-09 58.4 14.9 151 6-158 116-337 (668)
272 3v65_B Low-density lipoprotein 98.0 0.0017 5.7E-08 49.8 18.6 151 2-156 165-320 (386)
273 3v64_C Agrin; beta propeller, 98.0 0.0024 8.2E-08 48.2 19.5 151 2-156 122-277 (349)
274 1w6s_A Methanol dehydrogenase 98.0 0.00098 3.3E-08 54.1 17.8 81 58-141 452-534 (599)
275 3sov_A LRP-6, low-density lipo 97.9 0.0027 9.4E-08 47.3 18.4 148 2-154 41-197 (318)
276 4hw6_A Hypothetical protein, I 97.9 0.0031 1.1E-07 49.0 18.4 150 1-153 233-432 (433)
277 2p4o_A Hypothetical protein; p 97.9 0.0032 1.1E-07 46.4 17.6 132 7-144 128-278 (306)
278 3m0c_C LDL receptor, low-densi 97.9 0.0048 1.6E-07 51.7 20.2 151 2-155 430-590 (791)
279 3sov_A LRP-6, low-density lipo 97.8 0.0045 1.5E-07 46.1 20.1 152 2-157 85-241 (318)
280 3kya_A Putative phosphatase; s 97.8 0.0029 1E-07 50.0 16.7 154 2-158 253-479 (496)
281 1ijq_A LDL receptor, low-densi 97.8 0.006 2.1E-07 45.2 20.7 152 2-156 83-240 (316)
282 3p5b_L Low density lipoprotein 97.7 0.0085 2.9E-07 46.1 20.4 153 2-157 165-323 (400)
283 3tc9_A Hypothetical hydrolase; 97.7 0.0081 2.8E-07 46.7 17.8 151 1-153 231-429 (430)
284 1n7d_A LDL receptor, low-densi 97.6 0.00023 8E-09 58.8 8.9 151 1-154 411-571 (699)
285 3amr_A 3-phytase; beta-propell 97.6 0.011 3.7E-07 44.6 16.7 135 16-153 98-262 (355)
286 3m0c_C LDL receptor, low-densi 97.6 0.022 7.5E-07 47.8 20.0 151 2-156 477-634 (791)
287 3pbp_A Nucleoporin NUP82; beta 97.5 0.016 5.5E-07 44.7 17.0 133 17-151 41-209 (452)
288 1k3i_A Galactose oxidase precu 97.4 0.0037 1.3E-07 51.2 13.6 66 3-68 250-323 (656)
289 2ism_A Putative oxidoreductase 97.4 0.0037 1.3E-07 47.2 12.4 95 1-98 36-152 (352)
290 3das_A Putative oxidoreductase 97.4 0.013 4.3E-07 44.2 14.9 139 1-141 37-219 (347)
291 3s25_A Hypothetical 7-bladed b 97.4 0.022 7.5E-07 42.1 15.9 139 3-156 60-218 (302)
292 1n7d_A LDL receptor, low-densi 97.4 0.0011 3.9E-08 54.7 9.8 153 2-157 459-617 (699)
293 1tl2_A L10, protein (tachylect 97.4 0.005 1.7E-07 43.2 11.4 148 1-158 46-212 (236)
294 3sre_A PON1, serum paraoxonase 97.4 0.027 9.2E-07 42.6 19.2 148 2-153 56-251 (355)
295 4a2l_A BT_4663, two-component 97.4 0.045 1.5E-06 45.8 19.2 144 6-156 367-528 (795)
296 3s94_A LRP-6, low-density lipo 97.3 0.045 1.5E-06 44.6 20.2 151 2-156 46-204 (619)
297 4a0p_A LRP6, LRP-6, low-densit 97.3 0.052 1.8E-06 44.3 20.4 150 1-155 42-198 (628)
298 2p9w_A MAL S 1 allergenic prot 97.3 0.022 7.4E-07 42.6 14.7 146 4-152 74-263 (334)
299 4a2l_A BT_4663, two-component 97.3 0.061 2.1E-06 45.0 19.0 141 5-155 415-572 (795)
300 3a9g_A Putative uncharacterize 97.3 0.014 4.8E-07 44.1 13.9 136 1-141 34-215 (354)
301 1cru_A Protein (soluble quinop 97.2 0.02 6.8E-07 44.8 14.8 99 1-99 32-162 (454)
302 2xbg_A YCF48-like protein; pho 97.2 0.037 1.3E-06 41.2 16.5 144 2-152 169-320 (327)
303 3pbp_A Nucleoporin NUP82; beta 97.1 0.0044 1.5E-07 47.8 9.6 104 2-107 72-208 (452)
304 1k3i_A Galactose oxidase precu 97.1 0.012 4E-07 48.3 12.8 115 42-156 190-325 (656)
305 2vpj_A Kelch-like protein 12; 97.1 0.043 1.5E-06 40.0 14.8 144 6-155 112-279 (301)
306 4a0p_A LRP6, LRP-6, low-densit 97.0 0.11 3.7E-06 42.5 19.1 150 2-157 86-240 (628)
307 2xn4_A Kelch-like protein 2; s 97.0 0.062 2.1E-06 39.2 14.7 144 6-155 108-277 (302)
308 2g8s_A Glucose/sorbosone dehyd 96.9 0.03 1E-06 42.3 12.7 136 1-140 23-214 (353)
309 3v9f_A Two-component system se 96.9 0.15 5.1E-06 42.6 18.0 142 6-155 417-569 (781)
310 3ii7_A Kelch-like protein 7; p 96.8 0.071 2.4E-06 38.9 14.1 144 6-155 55-226 (306)
311 3s94_A LRP-6, low-density lipo 96.8 0.16 5.3E-06 41.5 20.1 151 2-155 355-511 (619)
312 2vpj_A Kelch-like protein 12; 96.7 0.1 3.4E-06 38.0 14.6 145 6-156 62-233 (301)
313 3ii7_A Kelch-like protein 7; p 96.7 0.1 3.4E-06 38.1 14.1 142 6-155 101-273 (306)
314 4asc_A Kelch repeat and BTB do 96.7 0.085 2.9E-06 38.8 13.5 146 6-155 98-278 (315)
315 2be1_A Serine/threonine-protei 96.6 0.015 5.1E-07 43.7 8.8 143 8-151 11-181 (339)
316 1zgk_A Kelch-like ECH-associat 96.6 0.13 4.4E-06 37.7 13.9 144 6-155 121-288 (308)
317 1tl2_A L10, protein (tachylect 96.5 0.042 1.5E-06 38.6 9.9 135 7-149 4-158 (236)
318 2woz_A Kelch repeat and BTB do 96.4 0.16 5.5E-06 37.3 13.6 106 6-114 109-234 (318)
319 2xn4_A Kelch-like protein 2; s 96.4 0.17 5.7E-06 36.9 14.4 144 6-155 61-230 (302)
320 2xbg_A YCF48-like protein; pho 96.4 0.19 6.6E-06 37.2 17.3 109 35-147 160-272 (327)
321 1zgk_A Kelch-like ECH-associat 96.3 0.21 7E-06 36.6 13.8 144 6-155 70-241 (308)
322 2ism_A Putative oxidoreductase 96.2 0.2 6.8E-06 37.7 13.4 102 38-142 31-153 (352)
323 3v9f_A Two-component system se 96.2 0.45 1.5E-05 39.7 16.5 140 10-155 376-525 (781)
324 3a9g_A Putative uncharacterize 96.1 0.21 7.2E-06 37.6 12.7 102 37-142 28-153 (354)
325 3sbq_A Nitrous-oxide reductase 96.0 0.084 2.9E-06 42.3 10.6 101 39-142 324-453 (638)
326 4asc_A Kelch repeat and BTB do 96.0 0.29 1E-05 35.8 14.1 146 6-155 45-222 (315)
327 2xzh_A Clathrin heavy chain 1; 96.0 0.34 1.2E-05 36.3 16.4 148 4-153 160-331 (365)
328 3s25_A Hypothetical 7-bladed b 95.8 0.37 1.3E-05 35.5 14.3 137 3-156 21-178 (302)
329 2uvk_A YJHT; unknown function, 95.5 0.5 1.7E-05 35.2 13.2 137 17-157 168-345 (357)
330 2woz_A Kelch repeat and BTB do 95.5 0.48 1.6E-05 34.7 13.9 144 6-155 56-232 (318)
331 2zwa_A Leucine carboxyl methyl 95.4 0.7 2.4E-05 38.2 14.2 148 6-156 451-637 (695)
332 1bpo_A Protein (clathrin); cla 95.3 0.8 2.7E-05 35.7 18.2 148 4-153 159-330 (494)
333 3ei3_A DNA damage-binding prot 94.9 1.8 6.2E-05 38.1 18.2 131 18-153 493-635 (1158)
334 3das_A Putative oxidoreductase 94.8 0.94 3.2E-05 34.1 12.6 106 36-142 30-158 (347)
335 2xzh_A Clathrin heavy chain 1; 94.7 0.97 3.3E-05 33.9 18.5 144 3-155 74-237 (365)
336 3sre_A PON1, serum paraoxonase 94.6 1 3.6E-05 33.9 16.2 130 16-152 138-296 (355)
337 2uvk_A YJHT; unknown function, 94.3 1.1 3.8E-05 33.3 12.0 53 6-58 65-128 (357)
338 1cru_A Protein (soluble quinop 93.8 1.8 6.3E-05 33.7 14.2 104 38-142 27-162 (454)
339 2zwa_A Leucine carboxyl methyl 93.6 2.7 9.1E-05 34.8 14.9 148 6-156 397-579 (695)
340 3ei3_A DNA damage-binding prot 93.3 4.1 0.00014 35.9 15.7 141 9-151 897-1059(1158)
341 1bpo_A Protein (clathrin); cla 93.1 2.5 8.5E-05 33.1 17.9 144 3-155 73-236 (494)
342 2be1_A Serine/threonine-protei 92.4 0.33 1.1E-05 36.4 6.1 109 50-160 11-136 (339)
343 1xi4_A Clathrin heavy chain; a 91.6 2.8 9.6E-05 37.8 11.6 146 3-155 73-236 (1630)
344 3sbq_A Nitrous-oxide reductase 91.5 2.2 7.6E-05 34.4 10.0 69 85-155 326-409 (638)
345 1xi4_A Clathrin heavy chain; a 91.2 3.9 0.00013 37.0 12.1 146 4-151 159-328 (1630)
346 2g8s_A Glucose/sorbosone dehyd 90.4 4.4 0.00015 30.3 15.3 51 91-141 288-340 (353)
347 2wg3_C Hedgehog-interacting pr 89.4 4.9 0.00017 31.5 10.4 48 1-48 19-79 (463)
348 3zwu_A Alkaline phosphatase PH 86.8 3.2 0.00011 33.7 8.1 59 84-142 478-549 (592)
349 3zwu_A Alkaline phosphatase PH 85.0 2.9 0.0001 33.9 7.0 55 1-55 481-548 (592)
350 4gq2_M Nucleoporin NUP120; bet 84.2 8.1 0.00028 33.3 9.7 35 84-118 238-273 (950)
351 3no0_A DNA gyrase subunit A; D 83.8 10 0.00035 27.4 15.5 117 37-158 67-200 (276)
352 4a9v_A PHOX; hydrolase, beta-p 83.1 7.8 0.00027 31.3 8.5 59 84-142 478-549 (592)
353 2wg3_C Hedgehog-interacting pr 82.6 16 0.00053 28.7 13.7 30 38-67 14-44 (463)
354 4a9v_A PHOX; hydrolase, beta-p 82.6 4.3 0.00015 32.8 6.9 57 1-57 481-550 (592)
355 4gq2_M Nucleoporin NUP120; bet 80.0 2.7 9.1E-05 36.2 5.3 34 125-158 237-270 (950)
356 3uc1_A DNA gyrase subunit A; D 79.4 17 0.00057 27.0 18.7 149 6-157 108-282 (327)
357 4fhn_B Nucleoporin NUP120; pro 78.8 7.8 0.00027 34.1 7.9 31 88-118 245-275 (1139)
358 3ott_A Two-component system se 78.1 28 0.00096 28.8 17.9 137 10-155 115-261 (758)
359 4fhn_B Nucleoporin NUP120; pro 76.1 3.8 0.00013 36.0 5.2 31 3-33 245-275 (1139)
360 3qhy_B Beta-lactamase inhibito 75.2 20 0.00069 25.7 11.5 126 16-154 119-246 (282)
361 3f7f_A Nucleoporin NUP120; nuc 71.2 8.5 0.00029 32.0 5.8 32 89-120 228-259 (729)
362 1suu_A DNA gyrase subunit A; t 69.7 30 0.001 25.3 19.5 147 4-155 5-182 (312)
363 3f7f_A Nucleoporin NUP120; nuc 67.6 7.6 0.00026 32.3 4.8 30 5-34 229-258 (729)
364 3no0_A DNA gyrase subunit A; D 67.5 32 0.0011 24.7 18.0 147 6-157 79-249 (276)
365 3qhy_B Beta-lactamase inhibito 66.1 34 0.0012 24.6 11.5 88 16-110 41-128 (282)
366 3ott_A Two-component system se 57.7 80 0.0027 26.1 18.0 142 5-155 481-627 (758)
367 1q47_A Semaphorin 3A; beta pro 56.9 51 0.0017 26.1 7.6 56 94-149 423-487 (495)
368 1zvt_A Topoisomerase IV subuni 53.8 56 0.0019 23.1 14.8 147 8-157 3-166 (256)
369 3uc1_A DNA gyrase subunit A; D 51.0 72 0.0025 23.6 15.5 119 37-157 94-231 (327)
370 3al9_A Plexin-A2; beta-propell 50.5 34 0.0012 27.4 5.8 57 93-149 414-476 (539)
371 3b7f_A Glycosyl hydrolase, BNR 47.0 87 0.003 23.3 15.1 49 8-59 23-77 (394)
372 3ol2_B Plexin-B1; beta-propell 39.9 73 0.0025 25.5 6.1 56 94-149 402-461 (528)
373 3nvq_A Semaphorin-7A; beta-pro 39.4 1.5E+02 0.0051 24.1 7.8 56 94-149 382-444 (590)
374 4gz8_A Semaphorin-3A; multi-do 39.3 1.5E+02 0.0051 24.5 8.0 56 94-149 431-495 (667)
375 4hvt_A Ritya.17583.B, post-pro 38.3 1.7E+02 0.0059 24.3 13.8 148 3-156 137-331 (711)
376 1q47_A Semaphorin 3A; beta pro 37.9 1.5E+02 0.0051 23.5 7.6 55 9-63 423-487 (495)
377 1suu_A DNA gyrase subunit A; t 36.1 1.2E+02 0.0043 22.0 17.8 118 38-157 100-234 (312)
378 3l6v_A GYRA, DNA gyrase subuni 35.7 1.4E+02 0.0048 22.5 20.3 153 1-156 1-182 (370)
379 3nvq_A Semaphorin-7A; beta-pro 33.5 1.9E+02 0.0066 23.5 7.6 56 9-64 382-445 (590)
380 1zi0_A DNA gyrase subunit A; b 32.7 1.4E+02 0.0048 21.7 18.5 147 6-156 108-279 (307)
381 3mez_B Mannose-specific lectin 32.1 84 0.0029 18.9 7.4 8 101-108 66-73 (113)
382 1zi0_A DNA gyrase subunit A; b 29.2 1.6E+02 0.0056 21.3 19.8 147 5-156 1-178 (307)
383 4gz8_A Semaphorin-3A; multi-do 28.0 2E+02 0.0069 23.8 7.0 55 9-63 431-495 (667)
384 3kci_A Probable E3 ubiquitin-p 26.9 2E+02 0.0068 21.5 17.9 143 10-153 65-240 (389)
385 3oky_A Plexin-A2; transmembran 26.7 1.6E+02 0.0055 24.4 6.2 57 93-149 413-475 (681)
386 3oky_B Putative uncharacterize 25.8 2.7E+02 0.0091 22.6 7.4 26 125-150 471-496 (565)
387 3al9_A Plexin-A2; beta-propell 24.3 1.3E+02 0.0046 24.0 5.2 55 9-63 415-476 (539)
388 1olz_A Semaphorin 4D; developm 23.8 3.1E+02 0.011 22.7 7.5 56 94-149 417-477 (663)
389 3l6v_A GYRA, DNA gyrase subuni 22.8 2.5E+02 0.0085 21.2 20.0 145 7-155 113-317 (370)
390 1olz_A Semaphorin 4D; developm 21.7 3.4E+02 0.012 22.4 8.3 55 9-63 417-477 (663)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=201.30 Aligned_cols=150 Identities=12% Similarity=0.238 Sum_probs=141.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.. ......+.+ |
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-h 247 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSG-H 247 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 566778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...|.++ |+|++.+|++++.|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999974
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.1e-31 Score=196.97 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~-h 96 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788898 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...|.++ |+|++++|++++.|+.|++||++++ .....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+++..+
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 9999999 9999999999999999999999987 45567888855 899999999 678999999999999999976554
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=195.59 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.++.|++|++.+++....+..+...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~-h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEG-H 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcc-c
Confidence 47999999999999999999999999988888888889999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..++.++ |+|++++|++++.|+.|++||+++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||++++.+..
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999998876543
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=195.59 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=133.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|+|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||++. +.....+..
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecc
Confidence 5799999999999999999999999999999999999999999999987 5789999999999999985 455554432
Q ss_pred cCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+...+.++ |+|+ +.+|++|+.|+.|++||+++++++..+.+|.. .|++++|+|++ ++|++++.|+.|+|||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 044567888 8884 57888999999999999999999999999966 89999999998 57999999999999999887
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
+..
T Consensus 291 ~~~ 293 (344)
T 4gqb_B 291 ELF 293 (344)
T ss_dssp EEE
T ss_pred cEE
Confidence 643
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=2.2e-30 Score=201.07 Aligned_cols=155 Identities=14% Similarity=0.270 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||+.. ..++..+.+ |
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~~~-h 191 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 191 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcC-C
Confidence 47999999999999999999999999988899999999999999999999999999999999999974 577788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|.++ |+|++.+|++++.|+.|++||++++.++..+.+|.. .|.++.|+|++.+|++++.|+.|++||+++....
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999 999999999999999999999999999999999965 8999999999999999999999999999887544
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.4e-29 Score=189.45 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=144.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++....+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~-~ 106 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKG-H 106 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEEcC-C
Confidence 47999999999999999999999999998899999999999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|++++|++++.|+.|++||+++++.+..+..|.. +|.+++|+|++++|++++.|+.|++||++++..
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence 9999999 999999999999999999999999999999998855 899999999999999999999999999987654
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1.6e-29 Score=190.08 Aligned_cols=154 Identities=19% Similarity=0.290 Sum_probs=141.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+. +..+..+.+ |
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~-h 147 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLG-H 147 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEec-c
Confidence 4689999999999999999999999999999999999999999999999999999999999999996 466777888 9
Q ss_pred CCceeEE-EeeC------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLD------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ +.|. +..+++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 8774 45899999999999999999999989999965 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 227 ~~~~~ 231 (319)
T 3frx_A 227 AKKAM 231 (319)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 87654
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.3e-29 Score=189.27 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=139.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.........+.+ |
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h 139 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-C
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-c
Confidence 368999999999999999999999999999999999999999999999999999999999999999764455667888 9
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|.++ |+| ++.+|++++.|+.|++||++.+.....+..+....+..+.|+| ++.+|++++.|+.|++||++++.
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 9999999 998 6789999999999999999887766666544344789999987 77899999999999999998876
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 220 ~~ 221 (304)
T 2ynn_A 220 CV 221 (304)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.8e-29 Score=191.33 Aligned_cols=149 Identities=15% Similarity=0.260 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~ 79 (203)
++|+|++++|++|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+.. .
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999975 344444432 0
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+...+.++ |+|++.+|++|+.|+.|++||+.+++.+..+.+|.. +|.+++|+|++.+|++++.|+.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23468888 999999999999999999999999999999999965 899999999999999999999999997
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=189.02 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=135.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~ 76 (203)
|+|+|++++|++++.|++|++|++..+ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .++..+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 479999999999999999999999876 4567888999999999999999999999999999999997532 235566
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |...+.++ |+|++.+|++++.|+.|++|+++++. +...+.+|.. .|.+++|+|++++|++++.|+.|++|++.
T Consensus 147 ~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 147 NS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 77 88999999 99999999999999999999998875 4567888865 89999999999999999999999999974
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 225 ~ 225 (345)
T 3fm0_A 225 L 225 (345)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=188.52 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=130.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--- 70 (203)
|+|+|++++|++++.|++|++|++.. ...+..+.+|...|.+++|+|++++|++++.|++|++||+...+
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 47999999999999999999999853 35667888999999999999999999999999999999995322
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCCCceEEEEEeCC--CCeEEEEeCCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHD--RKFLGSISHDS 145 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~ 145 (203)
.++..+.. |...|.++ |+|++.+|++++.|+.|++|++.++ +++..+.+|.. .|.+++|+|+ +.+|++++.|+
T Consensus 144 ~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCC
Confidence 34566778 99999999 9999999999999999999999876 57788889965 8999999998 67899999999
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++|++++.
T Consensus 222 ~v~iw~~~~~ 231 (330)
T 2hes_X 222 TVRVWKYMGD 231 (330)
T ss_dssp CEEEEEEEEE
T ss_pred eEEEEEecCC
Confidence 9999998765
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=6.7e-29 Score=192.71 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=143.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++++.|+.|++||+.. +.+...+.. |
T Consensus 198 v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~-h 275 (410)
T 1vyh_C 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELRE-H 275 (410)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecC-C
Confidence 46899999999999999999999999999999999999999999999999999999999999999975 567778888 9
Q ss_pred CCceeEE-EeeC--------------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 81 PNSVDAL-LKLD--------------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~~-~~~~--------------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
...+.++ |+|+ +.+|++|+.|+.|++||++++.++..+.+|.. .|.+++|+|++++|+
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFIL 354 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEE
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEE
Confidence 9999999 8886 67899999999999999999999999999965 899999999999999
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028806 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
+++.|+.|++||+.++...
T Consensus 355 s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEETTTEEEEECCTTSCCC
T ss_pred EEeCCCeEEEEECCCCceE
Confidence 9999999999999876543
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.2e-28 Score=184.26 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=142.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-~ 148 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA-H 148 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 567777888 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..++.++ |+|++.++++++.|+.|++||+++++.+..+..+...++..++|+|++++|++++.|+.|++||++++...
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 8999999 99999999999999999999999998887765443447999999999999999999999999999887643
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=189.81 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE---EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~ 76 (203)
|+|+|+|++|++|+.|++|+||++.++... ....+|...|.+++|+|++++|++++.|+.+++|++.... .++..+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 579999999999999999999999887543 2336799999999999999999999999999999987432 356678
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++++|++++.|+.|++||+.++. .+..+..|.. .|.+++|+|++.+|++++.|+.|++|++
T Consensus 102 ~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 102 EG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYRE 179 (345)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred cC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence 88 99999999 99999999999999999999998763 4566778855 8999999999999999999999999998
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
++.
T Consensus 180 ~~~ 182 (345)
T 3fm0_A 180 EED 182 (345)
T ss_dssp ETT
T ss_pred cCC
Confidence 765
No 15
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.7e-29 Score=190.43 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-------
Q 028806 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------- 71 (203)
++|||||++|+++ +.|++|+|||+.+++.+..+. |...|.+++|+|++++|++++.++ +.+|+......
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDF 216 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecC
Confidence 4799999987654 478999999999998887775 566788888888888888877554 44444321100
Q ss_pred --------------------------------------------cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 72 --------------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 72 --------------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
....+.. |...|+++ |+|+|++|++|+.|+.|+|
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 0011234 56678899 9999999999999999999
Q ss_pred EEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+ .+|.. +|++++|+||+++|++++.|++|+||+++...
T Consensus 296 wd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999999998875 78865 89999999999999999999999999996544
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=2.5e-28 Score=185.06 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=139.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---ccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---DCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~ 77 (203)
|+|+|++++|++++.|++|++||+.++..+..+..|...|.+++|+|++++|++++.|+.+++|++.... .....+.
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 4799999999999999999999999999888999999999999999999999999999999999997532 2345567
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |...+.++ |++++. +++++.|+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||++++.
T Consensus 141 ~-h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 141 G-HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp C-CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred C-CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 7 88999999 887764 88999999999999999999999999965 89999999999999999999999999998876
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 218 ~~ 219 (340)
T 1got_B 218 CR 219 (340)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=3.4e-28 Score=187.67 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=133.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.. +.....+. +
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--~ 205 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--I 205 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE--C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 44554554 4
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-------ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...+.++ |+| ++.+|++++.|+.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 5677888 888 8999999999999999999998877666 45644 899999999999999999999999999
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+++..
T Consensus 285 ~~~~~ 289 (393)
T 1erj_A 285 LQNAN 289 (393)
T ss_dssp C----
T ss_pred CCCCC
Confidence 98754
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=185.32 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=130.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++ .|++|+.||+|+|||+.+++.+ ..+.+|...|++++|+|++++|++++.|++|++||+.+ +.++..+
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~ 165 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSY 165 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEE
Confidence 4789985 6789999999999999887533 23458999999999999999999999999999999975 6788889
Q ss_pred eccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCC-CCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++. +|++++.|+.|++||++++++...+..+. ...+.+++|+|+ +++|++++.|+.|++||+
T Consensus 166 ~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 166 RA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99 99999999 999875 78899999999999999998887764332 236899999995 568889999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
+++.+..
T Consensus 245 ~~~~~~~ 251 (344)
T 4gqb_B 245 KSTSCVL 251 (344)
T ss_dssp CC--CCE
T ss_pred CCCcEEE
Confidence 9876543
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=8.3e-28 Score=182.32 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=131.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~ 77 (203)
++|+|++.+|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999862 222222 2
Q ss_pred ccCCCceeEE-EeeCC----------CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 78 GLSPNSVDAL-LKLDE----------DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
. |...+.++ |+|++ .++++++.|+.|++|| ........+..|.. .|.+++|+|++++|++++.|+.
T Consensus 160 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 160 N-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp S-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCE
T ss_pred C-CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCe
Confidence 5 77789999 88886 7899999999999999 45667778888855 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 028806 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
|++||+.+.
T Consensus 237 v~iwd~~~~ 245 (343)
T 2xzm_R 237 LLIWDILNL 245 (343)
T ss_dssp EEEEESSCC
T ss_pred EEEEECCCC
Confidence 999999543
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=9.4e-28 Score=182.91 Aligned_cols=155 Identities=17% Similarity=0.301 Sum_probs=139.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++. +.++..+..
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC
Confidence 36899999999999999999999999999999999999999999987 568999999999999999985 577788888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|.++ |+|++.+|++++.|+.|++||++.++.+..+..+. ...+.+++|+|++++|++++.|+.|++||+.++.
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 99999999 99999999999999999999999888776665432 2368899999999999999999999999998765
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 318 ~ 318 (354)
T 2pbi_B 318 R 318 (354)
T ss_dssp E
T ss_pred e
Confidence 4
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=2.8e-28 Score=187.40 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=130.5
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| ++++|++|+.|++|++||++ .+..+..+.+|...|.+++|+|++.+|++++.|++|++||+.. +..+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~- 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNR- 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECC-
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecc-
Confidence 4555 78899999999999999998 4567778889999999999999999999999999999999985 445544433
Q ss_pred C-------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee----ccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 80 S-------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI----AEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 80 ~-------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
+ ...+.++ |+|+|.+|++|+.+|.|++||+..++.+..+ .+|.. .|.+++|+|++.+|++|+.|+.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCE
Confidence 2 2247888 9999999999999999999999988877666 56754 89999999999999999999999
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++|++....
T Consensus 369 ~iW~~~~~~ 377 (380)
T 3iz6_a 369 KIWAFSGHR 377 (380)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCCc
Confidence 999997653
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=6.8e-28 Score=183.68 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=130.8
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
+|+| ++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++.+|++++.|++|++||++. ...+..+..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~ 281 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKE 281 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCC
Confidence 4555 578999999999999999999999999999999999999999999999999999999999975 334444432
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+...+.++ |+|++.++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 023457788 999999999999999999999999999999999965 899999999999999999999999996
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=3.9e-28 Score=185.25 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=136.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF--V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~--~ 77 (203)
|+|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||++.. .....+ .
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~ 223 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFC 223 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeec
Confidence 47999999999999999999999999999999999999999999999874 7889999999999999753 333333 3
Q ss_pred ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
. +...+.++ |+|+ +.+|++|+.++.|++||+++++++..+..|.. .|.+++|+|++ ++|++++.|+.|+|||+++
T Consensus 224 ~-~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 224 A-SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp T-CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred c-ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 3 56678888 9997 56888999999999999999999999999865 89999999987 6799999999999999988
Q ss_pred cccCC
Q 028806 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
++...
T Consensus 302 ~~~~~ 306 (357)
T 4g56_B 302 SEVFR 306 (357)
T ss_dssp CEEEE
T ss_pred CcEeE
Confidence 76543
No 24
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1e-27 Score=178.48 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=131.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|+||++.. .+.+..+.+|...|.+++|+|+ +++|++++.|++|++||+.... ..+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999974 3567788999999999999864 8999999999999999997532 34556
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce--eeeeccCCCCceEEEEEeCC-------------CCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHD-------------RKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~-------------~~~ 137 (203)
+.. |...|.++ |+|+ +.+|++++.|+.|++||++++.. ...+..|.. .|.+++|+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcce
Confidence 677 88999999 9997 89999999999999999987632 355677755 8999999997 579
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEcCCCcEEEEEEcCCC
Confidence 9999999999999997654
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=1e-27 Score=194.57 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=136.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee--
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-- 77 (203)
++|+|++. .|++++.|++|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+.. +.....+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~ 231 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD 231 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccc
Confidence 47999987 699999999999999999988899999999999999999999999999999999999874 45555552
Q ss_pred -----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----------------------------------
Q 028806 78 -----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP---------------------------------- 117 (203)
Q Consensus 78 -----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---------------------------------- 117 (203)
+ |...|.++ |+|++++|++++.|+.|++||+.+++.+..
T Consensus 232 ~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 6 88999999 999999999999999999999987765433
Q ss_pred ---------eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 118 ---------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ---------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 311 ~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 311 PELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 345644 899999999999999999999999999988754
No 26
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=1.1e-27 Score=192.53 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=134.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+.. +.++..+.+ |
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~-h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG-H 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeC-C
Confidence 479999999999999999999996 456778888999999999999999999999999999999964 577888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...|.++ |+|++++|++++.|+.|++||. +++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999 9999999999999999999995 6888999999965 899999999999999999999999997
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=179.21 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=124.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--eEEEee-cC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc------cc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS-EF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------KD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~ 71 (203)
+|+|+ +|++|+.|++|++|++..+ .....+ .. |...|.+++|+|++++|++++.|+.|++|++... ..
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 56666 9999999999999999874 455555 44 8999999999999999999999999999998521 23
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC----CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+..+.+ |...|.++ |+|++++|++++.|+.|++||++. .+++..+..|.. .|.+++|+|++.+|++++.|+.
T Consensus 99 ~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 99 LLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSC
T ss_pred eEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence 4566778 99999999 999999999999999999999943 245677888865 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 028806 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
|++||+.+.
T Consensus 177 i~iW~~~~~ 185 (330)
T 2hes_X 177 VRIWKDYDD 185 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998654
No 28
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=2.2e-27 Score=192.66 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEe--------------------------------------------ec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTR--------------------------------------------SE 34 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~--------------------------------------------~~ 34 (203)
++|+|+|++||+|+.|++|+|||+.++ ..... +.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 479999999999999999999998532 12222 23
Q ss_pred CCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028806 35 FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
+|...|.+++|+|++. .|++++.|++|++||... ..+...+.+ |...|.++ |+|++++|++++.|+.|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 4566677777777765 588899999999999864 466778888 99999999 9999999999999999999999999
Q ss_pred ceeeeec-------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 113 RIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 113 ~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+..+. +|.. .|.+++|+|++++|++++.|++|++||+.++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp CEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cEeeeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 8887774 6755 899999999999999999999999999988654
No 29
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=3.7e-27 Score=175.43 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=130.5
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc-cc
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD-CS 73 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~-~~ 73 (203)
|+|+| ++++|++|+.|++|++|++.++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... ..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 46775 38999999999999999998763 45567789999999999997 88999999999999999975422 23
Q ss_pred eeeeccCCCceeEE-EeeC-------------CCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCC
Q 028806 74 DRFVGLSPNSVDAL-LKLD-------------EDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~-------------~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
..+.. |...+.++ |+|+ +++|++++.|+.|++||++++. ....+.+|.. .|.+++|+|++
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~ 216 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCC
Confidence 45677 88999999 9886 5799999999999999998766 5667888865 89999999984
Q ss_pred ---CeEEEEeCCCcEEEEeCCCc
Q 028806 136 ---KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ---~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+|++++.|+.|++||+++.
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 89999999999999999764
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=3.8e-27 Score=181.08 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=136.8
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEee-----cCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS-----EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
++|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++++.|+.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 357776 457999999999999999999887766 57888999999987 78999999999999999998656778
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------CceEEEEEeCCCCeEEEEeCCCc
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+.+ |...|.++ |+|++.+|++++.|+.|++||++++..+..+..+.. ..|.+++|+|++++|++++.||.
T Consensus 243 ~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 243 RTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred EEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 88888 99999999 999999999999999999999999988877765422 13889999999999999999999
Q ss_pred EEEEeCCCccc
Q 028806 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|++||+.++..
T Consensus 322 i~vwd~~~~~~ 332 (380)
T 3iz6_a 322 CYVWDTLLAEM 332 (380)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 99999876653
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=3.1e-27 Score=182.33 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=133.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc---
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--- 69 (203)
++|+| ++++|++++.|+.|++||+.++..+..+ .+|...|.+++|+|++.+|++++.|+.|++||+...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 36788 8999999999999999999998877666 568889999999999999999999999999999642
Q ss_pred --------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC------C
Q 028806 70 --------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH------D 134 (203)
Q Consensus 70 --------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~------~ 134 (203)
..+...+.+ |...+.++ |+|++.+|++++.|+.|++||+.+++++..+.+|.. .|.+++|++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPE 369 (393)
T ss_dssp ---------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTT
T ss_pred ccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCC
Confidence 123445677 88899999 999999999999999999999999999999999965 899999886 6
Q ss_pred CCeEEEEeCCCcEEEEeCCCc
Q 028806 135 RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++|++++.|+.|++|++...
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEECCCCcEEECccccc
Confidence 789999999999999998654
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.4e-27 Score=182.22 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=129.2
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++. ++++++.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++++.|+.|++||+.. +..+..+
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~ 265 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTS 265 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEE
Confidence 46888875 78999999999999999887655443 46678999999997 46889999999999999985 5677888
Q ss_pred eccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. +...|.++ |+|++ ++|++++.|+.|+|||+++++++..+ +|.. .|++++|+| ++.+|++++.|+.|++|++.
T Consensus 266 ~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 266 AV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 88 99999999 99987 57899999999999999998877655 6755 899999999 78999999999999999997
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 343 ~~~~ 346 (357)
T 4g56_B 343 SEGR 346 (357)
T ss_dssp ----
T ss_pred CCCc
Confidence 6443
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=3.3e-27 Score=194.04 Aligned_cols=155 Identities=20% Similarity=0.284 Sum_probs=138.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++++.|++|++||+.. .....+
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~ 513 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKYTISEGG 513 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSST
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC--CcceeeccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999853 222222
Q ss_pred eccCCCceeEE-EeeCC--CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ |...|.++ |+|++ ..+++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 514 ~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 514 EG-HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp TS-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CC-CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 35 77789999 99976 6899999999999999999999999999965 89999999999999999999999999998
Q ss_pred CcccCC
Q 028806 154 DILKGS 159 (203)
Q Consensus 154 ~~~~~~ 159 (203)
++....
T Consensus 592 ~~~~~~ 597 (694)
T 3dm0_A 592 EGKKLY 597 (694)
T ss_dssp TTEEEE
T ss_pred CCceEE
Confidence 876543
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.8e-28 Score=185.72 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=129.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .....+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 579999999999999999999999988 6777888999999999999999999999999999999997532 245556
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeecc-CCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. |...+.++ |+|++++|++++.|+.|++||+++++ ....+.. |.. .|.+++|+|++++|++++.|+.|++||
T Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 97 LR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp CC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred cc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 67 88999999 99999999999999999999999876 3666776 744 899999999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 175 ~~~~ 178 (377)
T 3dwl_C 175 AYVR 178 (377)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9643
No 35
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=9.4e-27 Score=174.96 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=133.2
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC---------eEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+| ++++|++++.|+.|++|++.++ +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 46888 6999999999999999999876 667788899999999999999 9999999999999999986
Q ss_pred Cccc-----------------------------------------------------------cceeeeccCCCceeEE-
Q 028806 68 YFKD-----------------------------------------------------------CSDRFVGLSPNSVDAL- 87 (203)
Q Consensus 68 ~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~- 87 (203)
.... .+..+.. |...|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~ 221 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSIS 221 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEE
Confidence 4211 0223445 77889999
Q ss_pred EeeCC----CEEEEEcCCCcEEEEEccCC----------------------------------------------ceeee
Q 028806 88 LKLDE----DRVITGSENGLISLVGILPN----------------------------------------------RIIQP 117 (203)
Q Consensus 88 ~~~~~----~~l~~~~~d~~i~~~d~~~~----------------------------------------------~~~~~ 117 (203)
|+|++ .+|++++.||.|++||++.+ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 99998 89999999999999999875 56667
Q ss_pred eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|.+++|+|++++|++++.||.|++|++.++..
T Consensus 302 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 302 HDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred Eecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 778855 899999999999999999999999999987654
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=2.8e-27 Score=183.22 Aligned_cols=156 Identities=18% Similarity=0.290 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
|+|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.. +..+..+..
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~ 223 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKE 223 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCC
Confidence 47999999999999999999999999988888999999999999999999999999999999999975 455555543
Q ss_pred cC---------------------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 79 LS---------------------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~---------------------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+ ...+.++ |+|++++|++++.+|.|++||+++++.+..+.......|.+++|+|++.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 01 2344445 6789999999999999999999998877776543344899999999998
Q ss_pred -eEEEEeCCCcEEEEeCCCccc
Q 028806 137 -FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 -~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|++++.||.|++||++++..
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTS
T ss_pred CEEEEEeCCCeEEEEEcCCCcC
Confidence 999999999999999988643
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1e-26 Score=174.79 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=135.7
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++.+|++++.|++|++||+.+ +..+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeE
Confidence 4688865 8999999999999999863 345678889999999999999999999999999999999975 57778
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC------CCeEEEEeCCCcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD------RKFLGSISHDSML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~d~~i 147 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||++ +..+..+.+|.. .|.++.|+|. +.+|++++.|+.|
T Consensus 102 ~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 102 RFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 8899 99999999 99999999999999999999986 567778888865 8999999985 4489999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||+++....
T Consensus 179 ~~wd~~~~~~~ 189 (319)
T 3frx_A 179 KAWNLNQFQIE 189 (319)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCcchhh
Confidence 99999876543
No 38
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=7.1e-27 Score=174.57 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=116.5
Q ss_pred cccc---cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc---cceEEEEEeeCCCEE------------EEecCCCeEEE
Q 028806 2 TFAA---DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKV------------VCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~~ 63 (203)
+|+| ++.+|++++.|++|+|||+.+++++.++.+|. ..+.+++|+|++.++ ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5677 66889999999999999999999999997653 357788999999876 55778999999
Q ss_pred EEcCCccccceee-----eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 64 YSWGYFKDCSDRF-----VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
||..+ +..+..+ .+ |...+.+ .+.++.++++++.|++|+|||+.+++++.++.+|....+.+++|+|+|++|
T Consensus 265 Wd~~t-gk~l~v~~~~~p~G-h~~~~ls-g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKT-TLSVGVMLYCLPPG-QAGRFLE-GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTT-TEEEEEEEECCCTT-CCCCEEE-EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCC-CEEEEEEEeeccCC-CcceeEc-cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 99975 4444443 23 4333322 244488999999999999999999999999998866345568999999999
Q ss_pred EEEeCCCcEEEEeC
Q 028806 139 GSISHDSMLKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~i~iwd~ 152 (203)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999986
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=4.6e-27 Score=182.00 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=137.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+|++++|++++.|+.|++|++.++.....+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG-HR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEEEEC-CS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceEEcC-CC
Confidence 5789999999999999999999999998888889999999999999999999999999999999975 567788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---C--------------------CceEEEEEeCCCCe
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--------------------YPIESLALSHDRKF 137 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~--------------------~~i~~i~~~~~~~~ 137 (203)
..|.++ |+|++.+|++++.|+.|++||+++++.+..+..+. . ..+.+++|+|++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999 99999999999999999999999999888886532 1 13444556789999
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|++++.|+.|++||++++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE
T ss_pred EEEEcCCCeEEEEECCCCcee
Confidence 999999999999999887643
No 40
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.4e-26 Score=173.96 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=132.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
|+|+|++++|++++.||.|++|++.++ +....+.+|...|.+++|+| ++.+|++++.|+.|++||+....
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 579999999999999999999999875 46677888999999999999 69999999999999999997532
Q ss_pred ----ccceeeeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce-----------------------------
Q 028806 71 ----DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI----------------------------- 114 (203)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~----------------------------- 114 (203)
..+..+.. |...+.++ |+|+ +.++++++.|+.|++||+++++.
T Consensus 97 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 97 GRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred ccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 33556677 88999999 9999 99999999999999999875431
Q ss_pred -------------------------------eeeeccCCCCceEEEEEeCCC----CeEEEEeCCCcEEEEeCCCccc
Q 028806 115 -------------------------------IQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 115 -------------------------------~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..+..|.. .|.+++|+|++ ++|++++.|+.|++||+++...
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 334455644 89999999998 8999999999999999987643
No 41
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=4.5e-27 Score=181.63 Aligned_cols=155 Identities=11% Similarity=0.153 Sum_probs=138.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|+|+| ++++|++|+.||.|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~ 165 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA 165 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC
Confidence 47999 8999999999999999999887 5567788999999999999998 6999999999999999985 56
Q ss_pred cceee--eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEE---eCC
Q 028806 72 CSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSI---SHD 144 (203)
Q Consensus 72 ~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~---~~d 144 (203)
.+..+ .. |...+.++ |+|++.+|++++.|+.|++||+++++.+..+ ..|....+.++.|+|++.+|+++ +.|
T Consensus 166 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 AVLTLGPDV-HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp EEEEECTTT-CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ccEEEecCC-CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 66677 67 88999999 9999999999999999999999999998888 67765458999999999999999 789
Q ss_pred CcEEEEeCCCccc
Q 028806 145 SMLKLWDLDDILK 157 (203)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (203)
+.|++||+++...
T Consensus 245 ~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 245 RQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEEETTBCSS
T ss_pred ceEEEEcCccccC
Confidence 9999999988654
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=3.1e-27 Score=177.40 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=130.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|+|||+.++. .+..+.+|...|.+++|+| ++++|++++.|++|++||+.... .....
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 4799999999999999999999998764 4677889999999999986 48999999999999999997532 34556
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce---eeeeccCCCCceEEEEEeCC---------------
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHD--------------- 134 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~--------------- 134 (203)
+.+ |...|.++ |+|+ +.+|++++.|+.|++|+++.+.. ...+..|.. .|.+++|+|+
T Consensus 99 ~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEECCCCCC------CCSCCC
T ss_pred ccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEccccCCccccccccccCc
Confidence 777 89999999 9997 88999999999999999987532 345567754 7999999997
Q ss_pred --CCeEEEEeCCCcEEEEeCCCc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.+|++++.|+.|++||++..
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTT
T ss_pred cccceEEEecCCCeEEEEEeCCC
Confidence 478999999999999999754
No 43
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.8e-27 Score=182.00 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--ccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~ 75 (203)
++|+|++++|++++.|++|++|++.++. ....+..|...|.+++|+|++++|++++.|+.|++||+..... ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 4799999999999999999999999876 5667788999999999999999999999999999999975322 2444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------------------CCceeeeeccCCCCceEEEEEeCCCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL------------------PNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
+...|...+.++ |+|++.+|++++.|+.|++||+. .++++..+ .|.. .|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCC
Confidence 432267889999 99999999999999999999985 34556666 6744 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCccc
Q 028806 137 FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|++++.|+.|++||+.++..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCcEEEEECCCCCC
Confidence 999999999999999998765
No 44
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=2.5e-26 Score=184.57 Aligned_cols=147 Identities=20% Similarity=0.343 Sum_probs=135.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.|+.|++|+. +++.+..+..|...|.+++|+|++++|++++.|+.|++|+.. +..+..+.. |
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~-~ 466 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTG-H 466 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcC-C
Confidence 478999999999999999999995 566778888999999999999999999999999999999974 467778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ |+|++++|++++.|+.|++|+. +++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||..
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999 9999999999999999999995 6888899999965 89999999999999999999999999964
No 45
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=8.7e-26 Score=171.20 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=127.6
Q ss_pred cc-cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 4 AA-DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 4 sp-~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+| ++++|++|+.|++|++|++.. +.....+.+|...|.+++|+|++.++++++.|++|++||+.+ +..+..
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~ 113 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKR 113 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEE
Confidence 55 899999999999999999874 345677889999999999999999999999999999999985 567788
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCCceEEEEEeCCC----------CeEEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDR----------KFLGSI 141 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~----------~~l~~~ 141 (203)
+.+ |...|.++ |+|++++|++++.|+.|++||+... ...... .|.. .|.+++|+|++ .+|+++
T Consensus 114 ~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 114 FVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASV 190 (343)
T ss_dssp EEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred EcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEE
Confidence 888 99999999 9999999999999999999999743 333332 5544 79999999987 789999
Q ss_pred eCCCcEEEEeCCC
Q 028806 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+.|++||...
T Consensus 191 ~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 191 GWDGRLKVWNTNF 203 (343)
T ss_dssp ETTSEEEEEETTT
T ss_pred cCCCEEEEEcCCC
Confidence 9999999999543
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.6e-26 Score=180.45 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=127.5
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+| ++++||+|+.||+|+|||+.++. ....+.+|...|++|+|+| ++++|++++.|++|++||+.. .....+
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEE
Confidence 57999 56799999999999999998654 4455678999999999998 689999999999999999963 333333
Q ss_pred ecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++.+|++|+.+|.|++||++ ++.+..+..|.. .|.+++|+|++. +|++++.|+.|++||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEec
Confidence 320 23346777 89999999999999999999986 466777888865 899999999886 6788999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
++.....
T Consensus 281 ~~~~~~~ 287 (435)
T 4e54_B 281 RQVRGKA 287 (435)
T ss_dssp TTCCSSS
T ss_pred ccccccc
Confidence 8876543
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=3.9e-26 Score=190.01 Aligned_cols=155 Identities=15% Similarity=0.245 Sum_probs=142.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|+||++.++..+..+..|..+|.+++|+|++++|++++.|+.|++|++.+ +..+..+.. |
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~-~ 96 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|++++|++++.+|.|++|++.++ .....+..|.. .|.+++|+| ++.+|++++.|+.|++||+.+...
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 9999999 9999999999999999999999987 66677788855 899999999 889999999999999999977654
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 176 ~ 176 (814)
T 3mkq_A 176 N 176 (814)
T ss_dssp S
T ss_pred e
Confidence 3
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=7.1e-26 Score=174.03 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---C---ccceEEEEEeeCCCEEEEecCC---CeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---S---EEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~ 71 (203)
++|+|++ +|++++.|+.|++|++.+++.+..+.. | ...|.+++|+|++.+|++++.+ +.|++||+.. +.
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~ 269 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 269 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-Cc
Confidence 4689999 999999999999999999999988888 8 8999999999999999999999 9999999975 45
Q ss_pred cceeeecc------------CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec------cC-----------
Q 028806 72 CSDRFVGL------------SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA------EH----------- 121 (203)
Q Consensus 72 ~~~~~~~~------------~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~----------- 121 (203)
.+..+... |...+.++ |+|++.+|++++.|+.|++||+++++.+..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 55555421 46788999 99999999999999999999999999998888 66
Q ss_pred ----CCCceEEEEEeCCC----------CeEEEEeCCCcEEEEeCCCc
Q 028806 122 ----SEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 122 ----~~~~i~~i~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (203)
.. +|.+++|+|++ ++|++++.|+.|++|++.++
T Consensus 350 ~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 55 89999999998 79999999999999999765
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4e-26 Score=176.32 Aligned_cols=157 Identities=10% Similarity=0.176 Sum_probs=141.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCC-CEEEEecCCC---eEEEEEcCCc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~ 69 (203)
++|+|+ +.+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .+|++++.++ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 478998 789999999999999999999988888766 7889999999997 6899999998 9999999865
Q ss_pred cccceeee-ccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCC
Q 028806 70 KDCSDRFV-GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDS 145 (203)
Q Consensus 70 ~~~~~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~ 145 (203)
...+..+. . |...+.++ |+| ++.+|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++ .+|++++.|+
T Consensus 251 ~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCC
Confidence 56677777 7 89999999 999 999999999999999999999999999999865 89999999999 8999999999
Q ss_pred cEEEEeCCCcccCC
Q 028806 146 MLKLWDLDDILKGS 159 (203)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (203)
.|++|++.+.....
T Consensus 329 ~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 329 KIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEEESCCCCCSS
T ss_pred cEEEEEccCCCCCc
Confidence 99999998876544
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-26 Score=173.02 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
|+|+|++++|++++.||.|++|++. ++..+..+..|...|++++|+++ +.+|++++.|+.|++||+.... ..+..
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 5799999999999999999999998 55677788899999999999987 8999999999999999997532 15566
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeC-------------CCCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~ 137 (203)
+.. |...+.++ |+|+ +.++++++.++.|++||++.+. ....+..|.. .|.+++|+| ++.+
T Consensus 97 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECCCC----------CTTCE
T ss_pred ecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcCccccccccccCCCCCCE
Confidence 677 88999999 9999 9999999999999999998773 3445566755 899999999 6899
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 175 l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEeCCCeEEEEEecCCC
Confidence 9999999999999997654
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=2e-26 Score=179.94 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=128.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|+| ++++|++++.|++|++||+.++....... .+...+.+++|+|++.+|++|+.|+.|++||+. +..+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEe
Confidence 47998 68899999999999999998765543333 334567899999999999999999999999986 35667788
Q ss_pred ccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeee---eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. |...|.++ |+|++. ++++++.|+.|++||+++.+.... ...|.. +|.+++|+|++++|++++.|+.|++||+
T Consensus 248 ~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 248 M-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp C-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred c-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 8 99999999 999876 677899999999999987664433 345644 8999999999999999999999999999
Q ss_pred CCccc
Q 028806 153 DDILK 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
+++..
T Consensus 326 ~~~~~ 330 (435)
T 4e54_B 326 SQWDC 330 (435)
T ss_dssp SSSSS
T ss_pred CCCcc
Confidence 87653
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=1.3e-26 Score=173.95 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=129.0
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc--c
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD--C 72 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~--~ 72 (203)
|+|+| ++++|++++.|++|++||+.++ .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+..... .
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 46765 4899999999999999999876 456678889999999999998 78999999999999999975322 1
Q ss_pred ceeeeccCCCceeEE-EeeC-----------------CCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLD-----------------EDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~-----------------~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~ 131 (203)
...+.. |...+.++ |+|+ +.+|++++.|+.|++||++.+ +++..+.+|.. .|.+++|
T Consensus 143 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~ 220 (316)
T 3bg1_A 143 KKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAW 220 (316)
T ss_dssp CCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEEC
T ss_pred eeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEe
Confidence 344556 78888888 8887 478999999999999999755 46677888865 8999999
Q ss_pred eCCC----CeEEEEeCCCcEEEEeCCCc
Q 028806 132 SHDR----KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 132 ~~~~----~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|++ .+|++++.|+.|++|++.+.
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 9986 78999999999999998763
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=9.8e-26 Score=172.87 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=131.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++ ++|++|+.|+.|++|++.++.....+. +|...|.+++|+| ++.+|++++.|+.|++||+.. ..+..+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~ 156 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVF 156 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEE
Confidence 4799999 899999999999999999876655554 6899999999999 789999999999999999973 445555
Q ss_pred ecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++.+|++++.++.|++||+ +++.+..+..|.. .|.+++|+|+++ +|++++.|+.|++||+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence 440 33679999 9999999999999999999999 5778888888865 899999999998 8999999999999999
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
++..
T Consensus 235 ~~~~ 238 (383)
T 3ei3_B 235 RNIK 238 (383)
T ss_dssp GGCC
T ss_pred CCCC
Confidence 8743
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=7.9e-26 Score=195.80 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=143.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.||+|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~-~ 698 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDE-H 698 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 577888888 9
Q ss_pred CCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+| ++.++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.++..
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 9999999 888 566899999999999999999999999999966 899999999999999999999999999987654
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=169.37 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--- 77 (203)
|+|+|++++|++++.||.|++|++.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+... ..+..+.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~ 116 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPV 116 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSS
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCC
Confidence 579999999999999999999999999999999999999999999999999999999999999998642 2221111
Q ss_pred ------------------------------------------------------ccCCC--ceeEE-EeeCCCEEEEEcC
Q 028806 78 ------------------------------------------------------GLSPN--SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 78 ------------------------------------------------------~~~~~--~v~~~-~~~~~~~l~~~~~ 100 (203)
. +.. .+.++ |+|+++++++++.
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEET
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcC
Confidence 0 111 56677 8889999999999
Q ss_pred CCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.|+.|++||++++...
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999998 678888888855 8999999999999999999999999999887654
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.6e-25 Score=172.97 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=138.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.||.|++|++.+++.+..+..|...|.+++| ++.+|++++.|+.|++||+.........+.. |
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 216 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-C
Confidence 479999999999999999999999999999999999999999999 4679999999999999999865677778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe--CCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS--HDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~d~~i~iwd~~~~~ 156 (203)
...+.++ |+|++.+|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++. ++++++ .|+.|++||+.++.
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999 999999999999999999999999999988988855 899999999775 555554 69999999998876
Q ss_pred cCC
Q 028806 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
...
T Consensus 296 ~~~ 298 (401)
T 4aez_A 296 RVN 298 (401)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=9.4e-26 Score=169.34 Aligned_cols=155 Identities=14% Similarity=0.241 Sum_probs=134.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~ 74 (203)
++|+|++++|++++ ||.|++|++.++.. ...+ ..|...|.+++|+|++++|++++.++.|++||+..... ...
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 47999999999998 99999999986532 2222 26888999999999999999999999999999975321 445
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. +...+.++ |+|+++++++++.++.|++||+++++.+..+..|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 136 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 6677 88889999 999999999999999999999999999999988855 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 214 ~~~~~ 218 (337)
T 1gxr_A 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 87654
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=4.7e-25 Score=164.53 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=122.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----------------------------------------Cccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----------------------------------------SEEE 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----------------------------------------~~~~ 39 (203)
|+|+|++++|++|+.|++|++|++.+++.+..+.+ |...
T Consensus 73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 47999999999999999999999998876554433 4455
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---ceee----------------------------------------
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDRF---------------------------------------- 76 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~---------------------------------------- 76 (203)
+..+.+++++++|++++.|+.|++||+...... ....
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 677788888999999999999999998642110 0000
Q ss_pred ----eccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 77 ----VGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ----~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.. +...+..+ |+|.+..+++++ .|+.|++||+++++++..+.+|.. .|++++|+|++++|++++.|++|+|
T Consensus 233 ~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 233 CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 01 22334555 788888877654 789999999999999999999966 8999999999999999999999999
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||+....
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997654
No 59
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-25 Score=176.58 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=135.0
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcC--CCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc---c
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLR--KNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~ 72 (203)
++|+|++++| ++++.|+.|++|++. ++..+..+. .+...|.+++|+|++.+|++++.++.+++|++..... .
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 4799999996 889999999999998 777777665 5668899999999999999999999999999974321 2
Q ss_pred ceeeeccCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 73 SDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
...+.+ |...+.++ |+|+ +.+|++++.|+.|++||+.+++.+.. +.+|.. .|.+++|+ ++++|++++.|+.|
T Consensus 188 ~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 188 QEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSSEE
T ss_pred ceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCCeE
Confidence 336777 89999999 9999 99999999999999999999988877 557754 89999999 99999999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||++++...
T Consensus 265 ~vwd~~~~~~~ 275 (450)
T 2vdu_B 265 FAWDWKTGKNL 275 (450)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEe
Confidence 99999987643
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=2.1e-25 Score=169.74 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=131.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc--eee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS--DRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~ 76 (203)
++|+|++++|++++.++.|++|++.+++ .+..+..|...|.+++|+|++++|++++.|+.|++||+... ... ..+
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEEe
Confidence 4799999999999999999999999987 77888899999999999999999999999999999999643 322 233
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. +...+.++ |+|++++|++++.++.|++||+..+.. ...+ ..|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 93 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LR-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ec-CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 55 78889999 999999999999999999999998762 2333 45544 899999999999999999999999999
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
++.
T Consensus 171 ~~~ 173 (372)
T 1k8k_C 171 AYI 173 (372)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=2.9e-25 Score=170.27 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=132.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+| ++++|++++.|+.|++|++.+. .+..+.. +...|.+++|+|++.+|++++.|+.|++||+. +..+..+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEe
Confidence 47899 7899999999999999999864 3444433 44789999999999999999999999999994 5677888
Q ss_pred eccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC----CceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEE
Q 028806 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i 149 (203)
.. |...+.++ |+|++. ++++++.|+.|++||+++ +..+..+ .|.. .|.+++|+| ++.+|++++.|+.|++
T Consensus 201 ~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 201 KL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred cc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 88 99999999 999999 999999999999999997 5566666 5644 899999999 9999999999999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||++++...
T Consensus 278 wd~~~~~~~ 286 (383)
T 3ei3_B 278 YSSYDWSKP 286 (383)
T ss_dssp EETTBTTSC
T ss_pred EECCCCccc
Confidence 999887654
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-26 Score=184.62 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=129.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEE--EEeeCC-CEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSV--VLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|+ ..|++|+.||+|++||+.++ .+...+..|...|.++ +|+|++ .+|++++.|++|++||++. ..+...+
T Consensus 272 v~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~ 349 (524)
T 2j04_B 272 FDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT 349 (524)
T ss_dssp EEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred EEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence 467875 48999999999999999875 3445678899999999 567887 8999999999999999975 4555566
Q ss_pred eccCCC--ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ |.. .+.++ |+|++..+++++.++.|++||++++.++..+.+|.. .|++++|+|++++|++|+.|++|++||+.
T Consensus 350 ~~-~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 350 VS-RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EE-ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cc-ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 55 543 47788 999999999999999999999999988888888865 89999999999999999999999999986
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 428 ~~ 429 (524)
T 2j04_B 428 RR 429 (524)
T ss_dssp SS
T ss_pred Hh
Confidence 54
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.9e-26 Score=174.93 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++.+..+..|...|.+++|+|++ ++++++.++.|++||+.. +..+..+.. +
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIV-D 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEEC-T
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEeccc-C
Confidence 4789999999999999999999999988888888899999999999999 999999999999999975 567777787 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--------------------eeeeeccCCCC-ceEEEEEeCCCCeE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--------------------IIQPIAEHSEY-PIESLALSHDRKFL 138 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--------------------~~~~~~~~~~~-~i~~i~~~~~~~~l 138 (203)
...+.++ |+|++.+|++++.+|.|++|++.++. .+..+..|... .|.+++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 8999999 99999999999999999999999887 88888888443 79999999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=4e-25 Score=165.87 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=137.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++|++.+++ ....+..|...|.+++|+|++++|++++.++.|++||+.. +..+..+..
T Consensus 103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~ 181 (337)
T 1gxr_A 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG 181 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec
Confidence 4789999999999999999999999876 5667778889999999999999999999999999999975 566777888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ |+|+++++++++.++.|++||+++++.+..+... . .+.+++|+|++++|++++.++.|++||+++...
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 89999999 9999999999999999999999999888777543 4 799999999999999999999999999987654
No 65
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.3e-25 Score=175.24 Aligned_cols=156 Identities=12% Similarity=0.216 Sum_probs=135.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+| ++.+|++++.|+.|++||++++ ..+..+..|...|++++|+|++. +|++++.|+.|++||++.....+..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 46899 6789999999999999999976 45667778999999999999886 6889999999999999875677888
Q ss_pred eeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC--------------CceeeeeccCCCCceEEEEEeCCCC-eE
Q 028806 76 FVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP--------------NRIIQPIAEHSEYPIESLALSHDRK-FL 138 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~--------------~~~~~~~~~~~~~~i~~i~~~~~~~-~l 138 (203)
+.. |...+.++ |+|++. +|++++.++.|++||+.. .+.+..+.+|.. .|.+++|+|++. +|
T Consensus 317 ~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 317 FES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWII 394 (430)
T ss_dssp EEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEE
T ss_pred eec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEE
Confidence 888 99999999 999985 688999999999999986 356677777855 799999999998 89
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.|+.|++|++......
T Consensus 395 ~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEETTSEEEEEEECHHHHC
T ss_pred EEEECCCCEEEeEccccccc
Confidence 99999999999999876554
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.5e-25 Score=168.11 Aligned_cols=154 Identities=17% Similarity=0.239 Sum_probs=133.8
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~ 73 (203)
|+|+|+ +++|++++.||.|++|++.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.... ...
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 468877 8999999999999999999986 66778889999999999999 9999999999999999997542 233
Q ss_pred eeeeccCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCC-
Q 028806 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.|+.|++||++++. ....+..|.. .|.+++|+|+
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~ 218 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 218 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCC
Confidence 45566 88899999 999 69999999999999999998764 4456777855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.|+.|++||+++..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCC
Confidence 8999999999999999998863
No 67
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=4.5e-25 Score=166.07 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=125.8
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+++ ..++++++.|+.|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...+..+..
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~- 255 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG- 255 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC-
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC-
Confidence 45554 45788999999999999999999999999999999999999999999999999999999985 456666664
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---------cCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
...+.++ |+|++. +++++.++.|++||++++..+..+. .|.. .|.+++|+|++++|++++.||.|+|
T Consensus 256 -~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 256 -GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp -SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5678888 888765 5566679999999998877665543 4534 7999999999999999999999999
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||++++.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998875
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=175.67 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=128.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCc------------cceEEEEEeeCC--CEEEEe
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSE------------EELTSVVLMKNG--RKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 55 (203)
|+|+|+|++||+|+.||.|+||++.++. ....+.+|. ..|.+++|+|++ ..|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 5799999999999999999999998766 477888888 889999999998 799999
Q ss_pred cCCCeEEEEEcCCcccc--------------------------------------cee-eeccCCCceeEE-EeeCCCEE
Q 028806 56 SQSGTVLLYSWGYFKDC--------------------------------------SDR-FVGLSPNSVDAL-LKLDEDRV 95 (203)
Q Consensus 56 ~~d~~i~~wd~~~~~~~--------------------------------------~~~-~~~~~~~~v~~~-~~~~~~~l 95 (203)
+.|+.|++|++...... ... ..+ |...|.++ |+|++++|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-HTYHINSISINSDYETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-CSSCCCEEEECTTSSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-CCcceEEEEEcCCCCEE
Confidence 99999999998642110 012 246 88899999 99999999
Q ss_pred EEEcCCCcEEEEEccC-Cceee-------eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCccc
Q 028806 96 ITGSENGLISLVGILP-NRIIQ-------PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 96 ~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+++ .|+.|++||+++ +..+. .+..|.. .|.+++|+|++ ++|++++.|+.|++||++++..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 998 799999999984 44444 3556755 89999999998 9999999999999999988764
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-25 Score=167.89 Aligned_cols=155 Identities=10% Similarity=0.169 Sum_probs=139.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|++++|++++.+|.|++||+.+ ...+..+..|...|.+++|+|++.+|++++.|+.|++||+.. ...+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-- 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-- 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE--
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec--
Confidence 46899999999999999999999998 788888889999999999999999999999999999999975 45555555
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC--------------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENG--------------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
+...+..+ |+|++.++++++.++ .+++||+.+++.+..+..|.. .|.+++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCC
Confidence 56778888 999999999999888 899999999999999999965 89999999999999999999
Q ss_pred CcEEEEeCCCcccCC
Q 028806 145 SMLKLWDLDDILKGS 159 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~ 159 (203)
|.|++|++.+.....
T Consensus 337 g~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDF 351 (369)
T ss_dssp SEEEEEEECHHHHTC
T ss_pred CeEEEEECccccchh
Confidence 999999998766543
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=2.7e-25 Score=169.19 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.+++... .+..|...|.+++|+|++++|++++.++.|++||+..... ....+
T Consensus 58 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 58 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 4799999999999999999999998886543 3467888999999999999999999999999999975332 12233
Q ss_pred -eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc------------------cCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 77 -VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI------------------LPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 77 -~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~------------------~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.. |...+.++ |+|++.+|++++.++.|++||+ ..++.+..+..|.. .|.+++|+|+++
T Consensus 138 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 215 (372)
T 1k8k_C 138 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 215 (372)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCC
Confidence 44 68889999 9999999999999999999995 36778888888855 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028806 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||++++...
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEEEeCCCEEEEEECCCCcee
Confidence 9999999999999999877644
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1e-25 Score=174.02 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=132.9
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCe----EEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-----
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----- 70 (203)
+++|+...+ ++++.+|.|+||++.... ....+.+|...|.+++|+| ++.+|++++.|+.|++|++....
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 456666544 457889999999997642 2345678999999999999 89999999999999999997532
Q ss_pred -ccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 71 -DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..+..+.+ |...|.++ |+|++ .+|++++.|+.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++.|+
T Consensus 121 ~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 121 REPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp CSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTS
T ss_pred CCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCC
Confidence 45677888 99999999 99998 69999999999999999999999888 77755 899999999999999999999
Q ss_pred cEEEEeCCCcccC
Q 028806 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|++||++++...
T Consensus 199 ~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 199 RVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEeCCCCcee
Confidence 9999999887654
No 72
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.7e-25 Score=167.11 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC---------CCeEEEeec-CCccceEEEEEee--CCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR---------KNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 68 (203)
+.|+|. +++++.|++|++|+.. +++.+..+. .|...|.+++|+| ++++|++++.|+.|++||+..
T Consensus 82 ~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 82 GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 356777 8999999999999765 444344443 5668899999999 999999999999999999985
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeecc-CCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAE-HSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
+.........+...+.++ |+|++.+|++|+.||.|++||+++++.+ ..+.. |.. +|.+++|+|++.+|++++ ++
T Consensus 159 -~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 159 -DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp -SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SS
T ss_pred -CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CC
Confidence 444444433145578899 9999999999999999999999999877 77887 755 899999999999999999 55
Q ss_pred cEEEEeCCCcccCC
Q 028806 146 MLKLWDLDDILKGS 159 (203)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (203)
.|++||+++.....
T Consensus 236 ~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 236 TVVCFDLRKDVGTL 249 (343)
T ss_dssp BEEEEETTSSTTCB
T ss_pred eEEEEEcCCCCcce
Confidence 99999999876543
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.5e-26 Score=191.45 Aligned_cols=149 Identities=11% Similarity=0.115 Sum_probs=125.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----E--eec-----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----T--RSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~--~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|+|++++|++|+.|++|++||+.++... . .+. +|...|.+++|+|++++|++++.|++|++|++...
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 478999999999999999999999876321 1 111 68889999999999999999999999999999643
Q ss_pred c--------------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028806 70 K--------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 70 ~--------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i 104 (203)
. .++..+.. |...|+++ |+|+| +|++|+.|+.|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 1 12556777 89999999 99999 99999999999
Q ss_pred EEEEccCCceee-----eec-cCCCCceEEEEEe-----CCC---CeEEEEeCCCcEEEEeC
Q 028806 105 SLVGILPNRIIQ-----PIA-EHSEYPIESLALS-----HDR---KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 105 ~~~d~~~~~~~~-----~~~-~~~~~~i~~i~~~-----~~~---~~l~~~~~d~~i~iwd~ 152 (203)
++||+++...+. .+. +|.. .|++++|+ ||| ++|++++.|++|++||+
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999998776653 232 6755 79999999 885 89999999999999999
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=3.2e-25 Score=167.81 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=128.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|+|++++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++.+|++++.++.|++||+.. +.....+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceee
Confidence 4889999999999999999999999887544 55788999999999 899999999999999999975 34444443
Q ss_pred ----ccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCC-------------------ceeeeeccCCCCceEEEEEe
Q 028806 78 ----GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ----~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~-------------------~~~~~~~~~~~~~i~~i~~~ 132 (203)
. |...+.++ |+|++. ++++++.||.|++||++.+ +.+..+..|.. +|.+++|+
T Consensus 253 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWS 330 (357)
T ss_dssp EEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEEC
T ss_pred eccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEc
Confidence 7 88999999 999998 8999999999999999854 35666777855 89999999
Q ss_pred CCCCeEE-EEeCCCcEEEEeCCCcc
Q 028806 133 HDRKFLG-SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~-~~~~d~~i~iwd~~~~~ 156 (203)
|++++|+ +++.|+.|++||+.+..
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 79999999999998654
No 75
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-25 Score=168.27 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=124.1
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+| +++++++++.|++|++||+.+++...... .+...+.+++|+|++.+|++|+.|+.|++||++........+.
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 210 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP 210 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence 46899 99999999999999999999988866654 4455799999999999999999999999999986433314444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc---CCCCceE--EEEEeCCCCeEEEEeC-CCcEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIE--SLALSHDRKFLGSISH-DSMLKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~--~i~~~~~~~~l~~~~~-d~~i~iw 150 (203)
..|..+|.++ |+|++.+|++++. +.|++||+++++.+..+.. |. ..+. +++|+|++++|++++. |+.|++|
T Consensus 211 ~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 211 VDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccccc-ccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 2278899999 9999999999994 5999999998877655543 21 1333 6999999999999998 9999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
++.+..
T Consensus 289 ~~~~~~ 294 (343)
T 3lrv_A 289 KFDKKT 294 (343)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 986543
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.1e-26 Score=180.14 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=129.7
Q ss_pred Cccccc------CCEEEEEcCCCeEEEEEcCCCeE-----------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 1 MTFAAD------AMKLLGTSGDGTLSVCNLRKNTV-----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~------~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
|+|+|+ +.+||+++.||+|++|++.++.. ...+.+|...|++++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 468876 67999999999999999976531 2356788899999999986 48999999999999
Q ss_pred EEcCCccccceeeeccCCCceeEE---EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeE
Q 028806 64 YSWGYFKDCSDRFVGLSPNSVDAL---LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l 138 (203)
||+.....+...+.. |...|.++ |+|++ .+|++++.|++|+|||++++++...+.+|.. ..|.+++|+|+++.|
T Consensus 292 WD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 999854445566788 99999998 36677 8999999999999999998887777766643 247899999999999
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028806 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++++.|+.|++||++++..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEECSSSEEEEEETTCTTC
T ss_pred EEeCCCCcEEEEECccccc
Confidence 9999999999999988764
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=9.4e-26 Score=171.14 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=133.1
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+ +++|++++.||.|++|++.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.. +..+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 153 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEE
Confidence 468888 67999999999999999999999999999999999999999 899999999999999999975 455555
Q ss_pred e---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc----------------------------CCC
Q 028806 76 F---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE----------------------------HSE 123 (203)
Q Consensus 76 ~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----------------------------~~~ 123 (203)
+ .. |...+.++ |+|++.+|++++.|+.|++||+++++....+.. |..
T Consensus 154 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 154 FGGVEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ECSTTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred eccccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 5 56 88899999 999999999999999999999987765544332 644
Q ss_pred CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 124 YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 124 ~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.+++|+ +.+|++++.|+.|++||+++...
T Consensus 233 -~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 233 -YVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp -CCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred -eEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 89999998 77999999999999999987654
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=5e-25 Score=167.13 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=132.0
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CccceEEEEEeeC----CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+|+ ...+++++.++.|++|++.++..+..+.. |...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 468874 45666666678999999997765554442 5578999999999 6799999999999999997
Q ss_pred CccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCeEEEEe
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +..+..+.. |...|.++ |+| ++.+|++++.||.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++
T Consensus 104 ~-~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 T-MQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp T-CCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEE
T ss_pred h-ceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEec
Confidence 5 577788888 99999999 999 9999999999999999999999988887 56754 899999999999999999
Q ss_pred CCCcEEEEeCCCccc
Q 028806 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
.|+.|++||++++..
T Consensus 181 ~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 181 MDHSLKLWRINSKRM 195 (366)
T ss_dssp TTSCEEEEESCSHHH
T ss_pred CCCCEEEEECCCCcc
Confidence 999999999987754
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=7.2e-25 Score=166.24 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=96.3
Q ss_pred Cccccc---CCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAAD---AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~---~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
|+|+|+ |++|++++.||.|++|++.+ +..+ ..+..|...|.+++|+|++++|++++.|+.|++||+.. +... .
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~-~ 122 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAI-Q 122 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE-E
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCce-e
Confidence 579998 69999999999999999986 4444 77788999999999999999999999999999999974 3433 4
Q ss_pred eeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 76 FVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 76 ~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
+.. |...+.++ | +|++.+|++++.|+.|++||+++++.
T Consensus 123 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 123 IAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred ecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 566 88999999 8 88999999999999999999876643
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=2.1e-24 Score=169.33 Aligned_cols=155 Identities=20% Similarity=0.267 Sum_probs=134.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~------ 72 (203)
++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+......
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 4678877 899999999999999999999999999999999999995 6789999999999999999753221
Q ss_pred ----------------ceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 73 ----------------SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
+..+.+ |...+.++ ++++.++++++.|+.|++||+++++.+..+..|.. .|.+++|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRG-HMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECC-CSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccC-ccceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCC
Confidence 334455 66666665 78899999999999999999999999999999865 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccCC
Q 028806 137 FLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+|++++.|+.|++||++++....
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEEE
Confidence 99999999999999998876543
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=166.17 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=127.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF-------- 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-------- 76 (203)
++.++++++.++.|++|++.++..+..+..|...|.+++|+|++. .|++++.|+.|++||++.....+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 566999999999999999999988888999999999999999998 58899999999999997544343333
Q ss_pred -------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-----------------------------------
Q 028806 77 -------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----------------------------------- 113 (203)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~----------------------------------- 113 (203)
.. |...+.++ |+|++.+|++++.|+.|++||+.+++
T Consensus 235 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 235 QAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred eeecccccc-ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 45 77889999 99999999999999999999987543
Q ss_pred ------------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 114 ------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 114 ------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+..+.+|.. .|.+++|+|++++|++++.||.|++|++.+.++..
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 3445566754 89999999999999999999999999999877553
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=1.4e-24 Score=178.40 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=132.3
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|++++|++++.|+.|++||+.. +....
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~ 466 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTR 466 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-Cccee
Confidence 4678764 7999999999999999875 345667889999999999999999999999999999999974 56777
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCC--CeEEEEeCCCcEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDR--KFLGSISHDSMLK 148 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~ 148 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||+......... ..|.. .|.+++|+|++ ..|++++.|+.|+
T Consensus 467 ~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 8888 99999999 9999999999999999999998654333222 35644 79999999987 5799999999999
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+||+++....
T Consensus 545 vwd~~~~~~~ 554 (694)
T 3dm0_A 545 VWNLSNCKLR 554 (694)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999876543
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=5.6e-25 Score=183.09 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.||.|++|++.+++.+..+..|...|++++|+|++.+|++++.|+.|++|++.........+.. |
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999865466677888 8
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+.++ |+| ++..+++++.+|.|++||+.++.....+..+....+.+++|+| ++.+|++++.|+.|++||+.++.
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999 999 8899999999999999999988877777766545899999999 99999999999999999998765
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 220 ~~ 221 (814)
T 3mkq_A 220 CV 221 (814)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=171.16 Aligned_cols=155 Identities=12% Similarity=0.208 Sum_probs=129.1
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCCeEE---------------------------------------Ee-ecCCcc
Q 028806 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNTVQ---------------------------------------TR-SEFSEE 38 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~~~ 38 (203)
|+|+|++ .+|++++.|++|++|++.++... .. ..+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 4789998 79999999999999998764331 12 357899
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-------eeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEc
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------RFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGI 109 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~ 109 (203)
.|.+++|+|++++|+++ .|+.|++||+......+. .+.. |...+.++ |+|++ .+|++++.||.|++||+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 99999999999999998 799999999974444443 3456 88899999 99998 99999999999999999
Q ss_pred cCCce----eeeeccCCC-----------CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC-cccC
Q 028806 110 LPNRI----IQPIAEHSE-----------YPIESLALSHDRKFLGSISHDSMLKLWDLDD-ILKG 158 (203)
Q Consensus 110 ~~~~~----~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~ 158 (203)
++++. +..+..|.. ..|.+++|+|++++|++++. +.|++||+++ ..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 98876 677777743 27999999999999999998 9999999987 4433
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-24 Score=159.60 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=132.0
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| +++++++++.|+.|++|| .......+.. |...+.+++|+|++. +++++.++.|++||+.. +..+..+..
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~- 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG- 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc-
Confidence 4666 899999999999999999 4456666666 889999999999988 89999999999999975 577788888
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...+.++ |+|++ .+++++.++.|++||+.+++.+..+..|.. +|.+++|+|+++ +++++.|+.|++|++.+....
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999 99999 688999999999999999999999988855 899999999998 667889999999999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 4
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.5e-24 Score=167.50 Aligned_cols=155 Identities=14% Similarity=0.221 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEec--CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+|++++|++++.|+.|++||+.++..+..+..|...|.+++|+|++ .++++++ .|+.|++||+.. +..+..+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~ 301 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD 301 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe
Confidence 4699999999999999999999999999988899999999999999976 5666654 799999999975 46666665
Q ss_pred ccCCCceeEE-EeeCCCEEEE--EcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDEDRVIT--GSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+...+.++ |+|++.++++ |+.+|.|++|++.++.... .+..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 302 --~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 302 --AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp --CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred --CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56788999 9999999999 4589999999999875544 3567755 8999999999999999999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
.++....
T Consensus 379 ~~~~~~~ 385 (401)
T 4aez_A 379 YDGDHVK 385 (401)
T ss_dssp CC-----
T ss_pred CCCcccc
Confidence 8876543
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.8e-24 Score=168.73 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=131.5
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe----E---EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT----V---QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK- 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~----~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~- 70 (203)
|+|+|++. +|++|+.||.|++|++..+. . ...+..|...|.+++|+| ++.+|++++.++.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 47999988 99999999999999998732 1 345668899999999999 67899999999999999998542
Q ss_pred -ccceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCC
Q 028806 71 -DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~ 145 (203)
..+..+.. |...+.++ |+|++. ++++++.+|.|++||+++ +.++..+..|.. .|.+++|+|++. +|++++.|+
T Consensus 267 ~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCC
Confidence 45666777 89999999 999887 688999999999999997 567788888855 899999999985 688999999
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++||+...
T Consensus 345 ~i~iwd~~~~ 354 (430)
T 2xyi_A 345 RLHVWDLSKI 354 (430)
T ss_dssp CCEEEEGGGT
T ss_pred cEEEEeCCCC
Confidence 9999999873
No 88
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.3e-25 Score=184.63 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=131.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS------- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~------- 73 (203)
|+|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+... ...
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~ 140 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNL 140 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccc
Confidence 47899 8899999999999999999998887776 5678999999999999999999999999999743 221
Q ss_pred ----eeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccC-----------------CCCceEEEE
Q 028806 74 ----DRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEH-----------------SEYPIESLA 130 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------~~~~i~~i~ 130 (203)
..+.+ |...|.++ |+|+ +..+++++.++.| +||+++++++..+..| ....|.+++
T Consensus 141 ~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSS-CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccc-CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 23456 78899999 9996 5789999999999 9999999888877655 013699999
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 131 LSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+|+|++|++++.|+.|++||++++.+
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 999999999999999999999988654
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-24 Score=165.24 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
|+|+|++++|++++.||.|++|+ .++..+..+..|...|.+++|+|++++|++++.++.|++||+....
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 47999999999999999999999 6677788889999999999999999999999999999999986421
Q ss_pred ---------------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028806 71 ---------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 71 ---------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i 104 (203)
..+..+.. |...+.++ |+|++++|++++.++.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCCEE
Confidence 11122334 66788899 99999999999999999
Q ss_pred EEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 105 SLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++||+++++.+..+..|.. .|.+++|+|++ +|++++.|+.|++||++++...
T Consensus 272 ~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp EEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 9999999998888888855 89999999999 9999999999999999877644
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-25 Score=172.36 Aligned_cols=157 Identities=10% Similarity=0.138 Sum_probs=126.4
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC---Ce---EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK---NT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~ 71 (203)
|+|+| ++++|++|+.||+|+||++.+ +. ....+ .|...|.+++|+|++.+|++++.|+.|++||+.. .+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence 47999 999999999999999999876 32 12222 4889999999999999999999999999999941 223
Q ss_pred cceeeec---------c--CCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCCceEEEEEeCCC
Q 028806 72 CSDRFVG---------L--SPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDR 135 (203)
Q Consensus 72 ~~~~~~~---------~--~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~ 135 (203)
....+.. . +...+.++ +++++.++++++.|+.|++||+++++.+..+.. |.. .|.+++|+|++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~ 226 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEEC 226 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTS
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCC
Confidence 3222221 0 12334444 357899999999999999999999999999887 645 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcccCC
Q 028806 136 KFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++|++++.|+.|++||++++....
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCeEEEEEcCCccEEE
Confidence 999999999999999998876543
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=2e-24 Score=167.83 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=128.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe----EEEeecCCccceEEEEEeeCC-CEEEE--ecCCCeEEEEEcCCccccce
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNG-RKVVC--GSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~~wd~~~~~~~~~ 74 (203)
.|+|+++++++++.|+.|++|+..+++ .+.....|...|.+++|+|.+ ..+++ |+.|+.|++||+.+ +.+..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~ 315 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS 315 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccce
Confidence 588999999999999999999998753 345566788999999999965 45554 45799999999975 56666
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. + ..+.++ |+|++..+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|+|++|++++.|++|+|||
T Consensus 316 ~~~~-~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 316 AVDA-H-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEC-S-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eecc-c-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6665 4 455666 999999988765 689999999999999999999966 899999999999999999999999999
Q ss_pred CCCcccC
Q 028806 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
+....+.
T Consensus 393 v~~~~~~ 399 (420)
T 4gga_A 393 CFELDPA 399 (420)
T ss_dssp CSCSSCC
T ss_pred CCCCCcc
Confidence 9765443
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.2e-25 Score=172.66 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-----ceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---- 71 (203)
++|||+|++||+++.||+|++|+..+ ++..+. |.. .+.+++|+|+|++|++|+.||+|++||+.....
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 57999999999999999999999544 666666 654 499999999999999999999999999975321
Q ss_pred --cceee----eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCCceEEEEEeCCCCeEEE
Q 028806 72 --CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 72 --~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.+..+ .+ |...|.++ |+|+| +++++.|+.|++|++..+.. ..++ ..|. ..|.+++|+ +++||+
T Consensus 168 ~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 FYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVL 241 (588)
T ss_dssp CEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEE
T ss_pred ceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEE
Confidence 24555 45 66799999 99999 88889999999999987763 2455 3564 479999999 689998
Q ss_pred EeCCCcEEEEeCCCccc
Q 028806 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
++ ++.|++||+.++..
T Consensus 242 a~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EC-SSEEEEEETTTTEE
T ss_pred Ee-CCeEEEEECCCCeE
Confidence 87 69999999988776
No 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=168.19 Aligned_cols=154 Identities=10% Similarity=0.215 Sum_probs=133.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCcc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~----- 70 (203)
++|+|++++|++++.|+.|++|++.+ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+....
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 47999999999999999999999987 4577888899999999999998 8999999999999999997543
Q ss_pred -cc--ceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC-----CCceEEEEEeCCC-CeEE
Q 028806 71 -DC--SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS-----EYPIESLALSHDR-KFLG 139 (203)
Q Consensus 71 -~~--~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~-~~l~ 139 (203)
.. ...+.. |...+.++ |+|+ +.++++++.++.|++||+++++.+..+..+. ...|.+++|+|++ .+|+
T Consensus 153 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 11 122355 78889999 9998 7899999999999999999999888887762 3379999999997 6899
Q ss_pred EEeCCC---cEEEEeCCCc
Q 028806 140 SISHDS---MLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~---~i~iwd~~~~ 155 (203)
+++.|+ .|++||+++.
T Consensus 232 ~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECCSSSCCCCEEETTST
T ss_pred EEECCCCCceEEEEeCCCC
Confidence 999998 9999999886
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=169.06 Aligned_cols=155 Identities=10% Similarity=0.189 Sum_probs=133.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GL 79 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~ 79 (203)
++|++++|++++.|+.|++||+.+++.+..+.. |...|.+++|+|++.+|++++.|+.|++||++. +.++..+. .
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~- 255 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFG- 255 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCT-
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecC-
Confidence 557899999999999999999999999888887 889999999999999999999999999999985 56666664 5
Q ss_pred CCCceeEE-Eee----CCCEEEEEcCCCcEEEEEccCCceeeeeccCC-------------------------CCceEEE
Q 028806 80 SPNSVDAL-LKL----DEDRVITGSENGLISLVGILPNRIIQPIAEHS-------------------------EYPIESL 129 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------------------~~~i~~i 129 (203)
+...|.++ ++| ++.+|++++.|+.|++||+++++.+..+..|. ...|.++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 67788888 654 67799999999999999999998877776441 2258889
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+ ++++|++++.|+.|++||+.++.....
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999 778999999999999999998876543
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=163.79 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=127.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCCcc----ceEEEE----EeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEE----ELTSVV----LMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|+|++++|++++.|+.|++|++.++. .+..+..+.. .+.+++ |+|++.+|++++.++.|++||+... ..
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~ 202 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL 202 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce
Confidence 689999999999999999999999875 5566655443 788888 6789999999999999999999753 33
Q ss_pred ceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCCceEEEEEeCCCC-eEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~-~l~~~~ 142 (203)
..... +...+.++ |+| ++.++++++.+|.|++||+++++.+..+. .|.. .|.+++|+|+++ +|++++
T Consensus 203 -~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 203 -RWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp -EEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEE
T ss_pred -eeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEe
Confidence 33455 78899999 999 99999999999999999998876655444 7755 899999999998 899999
Q ss_pred CCCcEEEEeCCCcccC
Q 028806 143 HDSMLKLWDLDDILKG 158 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~~ 158 (203)
.|+.|++||+++....
T Consensus 280 ~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTSEEEEEEEECCSCC
T ss_pred CCCcEEEeecCCCccc
Confidence 9999999999876544
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.4e-24 Score=176.56 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=135.2
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~ 73 (203)
|+|+|+ +++|++|+.||.|++|++.++. ....+..|...|.+++|+|+ +..+++++.||.|++||+.... ...
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 468887 9999999999999999999886 66778889999999999999 9999999999999999997542 234
Q ss_pred eeeeccCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCCceEEEEEeCC-
Q 028806 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.||.|++||++++ .....+..|.. +|.+++|+|+
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 216 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCC
Confidence 45667 88899999 898 5899999999999999999877 45567778855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.||.|++||++++.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCC
Confidence 8999999999999999998863
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.2e-23 Score=160.33 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=124.0
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-------------------------------
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------------------------- 49 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------- 49 (203)
++.++++.+ ++++.+++|++||+.+++.+..+. +...|.+++|+++.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence 456666766 556778899999999998888776 45678888877642
Q ss_pred ----CEEEE--ecCCCeEEEEEcCCcc--------------c-cceeeeccCCCceeEE-EeeCCCEEEEEcCCCc-EEE
Q 028806 50 ----RKVVC--GSQSGTVLLYSWGYFK--------------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL-ISL 106 (203)
Q Consensus 50 ----~~l~~--~~~d~~i~~wd~~~~~--------------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-i~~ 106 (203)
.++++ ++.+|.|++||+.... . .+..+.+ |...|.++ |+|++.+|++++.|+. |++
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 23333 5678899999987432 0 1667888 99999999 9999999999999998 999
Q ss_pred EEccCCceeeeec-c-CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPIA-E-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~~-~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||++...
T Consensus 223 wd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999998 4 654 89999999999999999999999999997653
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=7.4e-24 Score=170.97 Aligned_cols=159 Identities=14% Similarity=0.187 Sum_probs=131.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCccc-eEEEEEee--CCCEEEEecCCCeEEEEEcCCc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEE-LTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~---- 69 (203)
++|+|++++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++++.|+.|++||+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 57999999999988 789999999988 788899999999 99999999 9999999999999999999522
Q ss_pred ---cccceeeec-------------------------------------------cCCCceeEE-EeeCCC-EEEEEcCC
Q 028806 70 ---KDCSDRFVG-------------------------------------------LSPNSVDAL-LKLDED-RVITGSEN 101 (203)
Q Consensus 70 ---~~~~~~~~~-------------------------------------------~~~~~v~~~-~~~~~~-~l~~~~~d 101 (203)
......+.. .|...+.++ |+|++. .+++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 103 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 122233332 033445555 666665 67888889
Q ss_pred CcEEEEEccCCceeeeeccCCCC--ceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 102 GLISLVGILPNRIIQPIAEHSEY--PIESLALSHD-RKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~--~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+.|++||+.+++.+..+..|... .|.+++|+|+ +++|++++.|+.|++||++++.....
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 99999999999999999888431 6999999999 99999999999999999988765443
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-24 Score=179.03 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|++++|++|+.||.|+||++. ++.....+.+|...|++++|+|+ +++|++++.||.|++||+.... .....
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc
Confidence 4799999999999999999999998 45677888899999999999988 9999999999999999997532 15566
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeC-------------CCCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~ 137 (203)
+.. |...|.++ |+|+ +.++++++.||.|++||++++. ....+..|.. .|.+++|+| ++.+
T Consensus 95 ~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECCCC---------CGGGCC
T ss_pred ccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecCcccccccccccCCCCCE
Confidence 777 88999999 9999 9999999999999999998763 3445566754 899999999 5899
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.||.|++||+++..
T Consensus 173 l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEECCCeEEEEeccCCc
Confidence 9999999999999998763
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=2.4e-24 Score=165.55 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=131.5
Q ss_pred Cccccc----C---CEEEEEcCCCeEEEEEcCCCeE-----EEeecCC-----ccceEEEEEe----eCCCE-EEEecCC
Q 028806 1 MTFAAD----A---MKLLGTSGDGTLSVCNLRKNTV-----QTRSEFS-----EEELTSVVLM----KNGRK-VVCGSQS 58 (203)
Q Consensus 1 l~~sp~----~---~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d 58 (203)
++|+|+ + ++|++++.|+.|++|++.++.. ...+..| ...|.+++|+ |++.+ |++++.|
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 468888 9 9999999999999999988765 7778877 5899999999 99999 9999999
Q ss_pred CeEEEEEcCCc-----cccce-----ee-------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 59 GTVLLYSWGYF-----KDCSD-----RF-------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ~~i~~wd~~~~-----~~~~~-----~~-------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
+.|++||+... ...+. .+ .. +...+.++ |+|++ ++++++.++.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccC-CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999750 23443 44 34 67789999 99999 999999999999999999999988887
Q ss_pred ---C---CCCceEEEEEeCCCCeEEEEeCC---CcEEEEeCCCcccC
Q 028806 121 ---H---SEYPIESLALSHDRKFLGSISHD---SMLKLWDLDDILKG 158 (203)
Q Consensus 121 ---~---~~~~i~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 158 (203)
| .. .|.+++|+|++++|++++.| +.|++||++++...
T Consensus 226 ~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 226 QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 6 55 89999999999999999999 99999999877644
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.3e-24 Score=166.41 Aligned_cols=149 Identities=10% Similarity=0.142 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCccceEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
|+|+|++++|++++.++.|++|++.++.... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+.. +..+
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Ccee
Confidence 4799999999999999999999998765433 66778999999999999 99999999999999999975 4555
Q ss_pred ee-eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------------------CCCceE
Q 028806 74 DR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------------------SEYPIE 127 (203)
Q Consensus 74 ~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------------~~~~i~ 127 (203)
.. +.+ |...|.++ |+ ++.+|++++.|+.|++||+.+++.+..+..+ ....|.
T Consensus 234 ~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55 557 88999999 99 9999999999999999999999888777532 123689
Q ss_pred EEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 128 SLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
+++|+|++++|++++ .++.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999999 8999999999
No 102
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.92 E-value=1.6e-23 Score=157.49 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........+.. |
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-~ 170 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-H 170 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS-C
T ss_pred EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc-c
Confidence 469999999999999999999999998888888888888999999999999999999999999998754444444556 7
Q ss_pred CCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+..+ |+++ ..++++++.|+.|++||+++++.+..+.+|.. +|.+++|+|++++|++++.|+.|++||+++..+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8888888 7654 46788999999999999999999999999965 899999999999999999999999999988765
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 250 ~ 250 (340)
T 4aow_A 250 L 250 (340)
T ss_dssp E
T ss_pred e
Confidence 4
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=5e-24 Score=171.94 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=128.2
Q ss_pred CCEEEEEcC-CCeEEEEEcCCCeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 7 AMKLLGTSG-DGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 7 ~~~l~~~~~-d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+++|++++. ++.|++|++.++... ..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+...|...+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI 534 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence 778888888 999999999987665 67778999999999999999999999999999999975 455555543277889
Q ss_pred eEE-Eee----------CCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 85 DAL-LKL----------DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 85 ~~~-~~~----------~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.++ |+| ++.+|++++.|+.|++|++.++ +.+..+.+|.. .|.+++|+|+++ |++++.|+.|++|++
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999 999 9999999999999999999987 78888999965 899999999999 999999999999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
.+
T Consensus 613 ~~ 614 (615)
T 1pgu_A 613 VL 614 (615)
T ss_dssp C-
T ss_pred ec
Confidence 64
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=162.35 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEE--eeCCCEEEEecCCCeEEEEEcCCccccce----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVL--MKNGRKVVCGSQSGTVLLYSWGYFKDCSD---- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---- 74 (203)
|+|+|++++|++++.||.|++|++.+++.+. +..|...|.+++| +|++.+|++++.|+.|++||+.... .+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQL 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEEC
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEec
Confidence 4799999999999999999999999988765 4568899999999 8889999999999999999986421 111
Q ss_pred --------------------------------------------------------------------------------
Q 028806 75 -------------------------------------------------------------------------------- 74 (203)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (203)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence
Q ss_pred ------eeeccCCC------------ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 75 ------RFVGLSPN------------SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 75 ------~~~~~~~~------------~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
.+.. |.. .+.++ |+|++++|++++.||.|++||+.+++.+..+..|.. +|.+++|+|++
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g 327 (368)
T 3mmy_A 250 PAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNG 327 (368)
T ss_dssp HHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTS
T ss_pred ccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCC
Confidence 1111 222 58888 999999999999999999999999999999998855 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCc
Q 028806 136 KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|++++.|+..+.|++-..
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCT
T ss_pred CeEEEEecccccccccccCC
Confidence 99999998886666655433
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=4.5e-24 Score=164.73 Aligned_cols=154 Identities=9% Similarity=0.049 Sum_probs=120.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-----EeecCCccceEEEEEee--------CCCEEEEecCCCeEEEEEcCCc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMK--------NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
+++++++|++++.|++|++|++.++... ..+.+|...|.+++|+| ++++|++++.|++|++||+..
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~- 175 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD- 175 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-
Confidence 4567788999999999999999887543 34678999999999998 789999999999999999975
Q ss_pred cccceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeee-------------------------ccCC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-------------------------AEHS 122 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~-------------------------~~~~ 122 (203)
+.++..+.. |...+.++ |+|++. +|++++.|+.|++||+++++..... .+|.
T Consensus 176 ~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 EGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 345555666 88899999 999874 7999999999999999876543222 2342
Q ss_pred CCceEEEEEe-CCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 123 EYPIESLALS-HDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ~~~i~~i~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
. .+.++.|+ |+++.|++++.|+.+++||+.+.....
T Consensus 255 ~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 255 S-SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp S-SCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred c-cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 3 67888887 799999999999999999998776543
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=5.1e-23 Score=153.48 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=129.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+||+++ +||+| .|++|+|||+.+++++..+. .|...|.+++|+|++++|++|+.|+.|++|++.+ +..+..+.+
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~ 107 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTS 107 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEecC
Confidence 4789876 67766 58999999999998877664 5777899999999999999999999999999985 577778888
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ ++++..+++++.++.+.+|+.... ..+..+..|.. .+..+.+++++++|++++.|+.|++||++++..
T Consensus 108 -h~~~~~~~-~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 108 -HSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp -CSSCEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred -ccceEEEe-ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 87766554 667789999999999999998765 45566778855 899999999999999999999999999988764
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 185 ~ 185 (318)
T 4ggc_A 185 G 185 (318)
T ss_dssp B
T ss_pred c
Confidence 4
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=161.90 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=128.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------------cCCccceEEEEEee-CCCEEEEecCCCeEEEEE
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------------EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 65 (203)
|+|+| ++++|++++.||.|++|++.++.....+ ..|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 57999 9999999999999999999876433222 24889999999999 778999999999999999
Q ss_pred cCCccccceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEE
Q 028806 66 WGYFKDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGS 140 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~ 140 (203)
+.. +.....+. +...+.++ ++| ++.++++++.++.|++||+++++.+..+..|.. .|.+++|+|++.+ |++
T Consensus 129 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 129 TNT-LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILAT 204 (408)
T ss_dssp TTT-TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEE
T ss_pred CCC-Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEE
Confidence 974 45555544 56677777 766 556999999999999999999999999998865 8999999999985 889
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
++.|+.|++||+++..
T Consensus 205 ~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 205 ASADSRVKLWDVRRAS 220 (408)
T ss_dssp EETTSCEEEEETTCSS
T ss_pred EcCCCcEEEEECCCCC
Confidence 9999999999998765
No 108
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=4.8e-23 Score=161.58 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=133.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 352 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG-HT 352 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC-CC
Confidence 3567899999999999999999999999999999999999999999999999999999999999975 577888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+.++ ++ +.++++++.||.|++||+.++........ ...+..++|+|++++|++++ |+.|++||++++....
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 999988 65 68999999999999999998876665543 22677889999999999998 8999999999887554
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=1.3e-23 Score=158.22 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=125.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEc-CCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSW-GYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~-~~~~~~~~~ 75 (203)
++|+|++++|++++.|+.|++|++.++. ....+..|...|.+++|+|+++ +|++++.++.|++||+ ... .. ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~ 94 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SF-QA 94 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SE-EE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ce-Ee
Confidence 4799999999999999999999998765 3345557889999999999999 9999999999999999 643 22 22
Q ss_pred eec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 76 FVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 76 ~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
+.. .|...|.++ |+| +.++++++.|+.|++||+++ ++++..+. +.. .|.+++|+|++ +++++.+
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-KIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-CEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-ceEEEEecCCc--EEEEeCC
Confidence 221 056789999 999 99999999999999999988 77777776 544 89999999987 8999999
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|++||+++
T Consensus 170 ~~i~i~d~~~ 179 (342)
T 1yfq_A 170 SQVQWFRLPL 179 (342)
T ss_dssp TEEEEEESSC
T ss_pred CeEEEEECCc
Confidence 9999999988
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=150.71 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=130.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~ 78 (203)
|+| |++++|++++.||.|++|++.++.....+..|...|.+++|+|++.+|++++.|+.+++|++.... ..+..+..
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 467 899999999999999999999998888888899999999999999999999999999999986432 44667777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ | ++.++++++.++.|++|| .++....+..|.. ++.++.|.| ++.+|++++.|+.|++||.....
T Consensus 103 -~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 176 (313)
T 3odt_A 103 -HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKVI 176 (313)
T ss_dssp -CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEETTEEE
T ss_pred -cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEecCceE
Confidence 88999988 6 678999999999999999 6778888888855 899999998 89999999999999999955443
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=1.3e-23 Score=158.23 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=129.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-cc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~ 70 (203)
|+|+| +++|++++.|+.|++|++.+ ++++..+. |...|.+++|+|++ +++++.++.|++||+.. ..
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 46889 99999999999999999987 65555555 78899999999887 89999999999999975 32
Q ss_pred ccce-eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCC--------CceEEEEEeC
Q 028806 71 DCSD-RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~--------~~i~~i~~~~ 133 (203)
.... .... +...+.++ |+| ++.++++++.+|.|++|++... +....+..|.. ..|.+++|+|
T Consensus 183 ~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 2222 3344 67789999 999 9999999999999999999876 67777777632 2799999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 134 DRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++++|++++.||.|++||+.++....
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEecCCceEEEEcCccHhHhh
Confidence 99999999999999999998876543
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=6.3e-23 Score=177.74 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=136.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.. +.+...+.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecC
Confidence 47999999999999999999999999999999999999999999999 556899999999999999975 577778888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--------------------------------------
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------------------------------------- 119 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------------------------- 119 (203)
|...|.++ |+|++.++++++.||.|++||+.++.....+.
T Consensus 742 -h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 742 -HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp -CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred -CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 99999999 99999999999999999999998765443321
Q ss_pred -----------------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 120 -----------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 120 -----------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|. ..|.+++|+|+++++++++.++.|++|++.++...
T Consensus 821 v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE
T ss_pred EEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 342 37889999999999999999999999999876543
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=1.2e-22 Score=157.82 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=133.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|+|++|++|+.||+|+||++.+++.+..+.+|...+.++.+ ++..|++++.|+.+++||.......+..+.+ |
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h 229 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-H 229 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-c
Confidence 579999999999999999999999999999999999999988876 4679999999999999999876667778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCCC-eEEEE--eCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK-FLGSI--SHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~-~l~~~--~~d~~i~iwd~ 152 (203)
...+..+ ++|++.++++++.|+.|++|+..+++ .+.....|.. .|.+++|+|.+. .++++ +.|+.|++||+
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 9999999 89999999999999999999998765 3445566644 899999999765 45543 47999999999
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 309 ~t~~~~ 314 (420)
T 4gga_A 309 CSGACL 314 (420)
T ss_dssp TTTEEE
T ss_pred Cccccc
Confidence 987654
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=2.1e-22 Score=157.40 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=129.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||+|++|++.+++.+..+.+|...|.+++|+ +.++++++.|+.|++||+.+ +..+..+.. |.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-h~ 199 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG-HT 199 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC-CC
Confidence 366789999999999999999999999999999999999999997 67999999999999999975 567778888 88
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.++ + ++..+++++.||.|++||+.+++.+..+..|.. .|.++.| ++.+|++++.|+.|++||++++...
T Consensus 200 ~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 889888 6 467899999999999999999998888888855 7888888 7788999999999999998776543
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=3.1e-22 Score=156.11 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=130.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||.|++||+.+++....+.+|...|.+++| ++.+|++++.||.|++||+.+ +..+..+.. |.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 213 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH-HC 213 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC-CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC-CC
Confidence 45678999999999999999999999999999999999999998 788999999999999999975 577788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..+.++ |+ +.++++++.||.|++||+.++... ..+.+|.. .|.++.| ++++|++++.|+.|++||++++..
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999 65 569999999999999999887655 56777755 8999998 778999999999999999988765
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 289 ~ 289 (435)
T 1p22_A 289 V 289 (435)
T ss_dssp E
T ss_pred E
Confidence 4
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=2.9e-23 Score=160.17 Aligned_cols=151 Identities=12% Similarity=0.154 Sum_probs=106.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce----------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD---------- 74 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~---------- 74 (203)
++++||+++.|++|+|||+.++..+..+..|...+.+++|+|++ .+|++++.|++|++||+........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 88999999999999999999888877788889999999999987 5799999999999999975321111
Q ss_pred --------------eeeccCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE----------
Q 028806 75 --------------RFVGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES---------- 128 (203)
Q Consensus 75 --------------~~~~~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~---------- 128 (203)
...+ +...+.++ |+ |++..|++++.|+.+++||+.+++....+..+.. .+..
T Consensus 235 ~~~s~~~~~~~~~~~~~~-~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSG-IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------C-CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred eEEecccccceeeeeccc-ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccc
Confidence 0123 55667788 64 8999999999999999999987766555544422 2222
Q ss_pred --------EEEeC--CCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 129 --------LALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 129 --------i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|+| ++.++++++.|+.|++||+.++...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 23333 3346677889999999999877654
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9e-23 Score=161.36 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-------EEEee----cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-------VQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|||+|++||+|+.||+|++|++.++. .+.++ .+|...|.+++|+|++ +++++.|+.+++|++...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 5799999999999999999999999874 35665 6677899999999999 788888999999999753
Q ss_pred cc--cceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE--eCCCCeEEEEeC
Q 028806 70 KD--CSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL--SHDRKFLGSISH 143 (203)
Q Consensus 70 ~~--~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~ 143 (203)
.. ..+.+. . |...|.++ |+ +..|++++ ++.|++||+.+++......+|.. .|..++| +|++..|++++.
T Consensus 213 ~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 213 SHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSS
T ss_pred ccccceeeeccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcC
Confidence 31 224463 5 77889999 88 68899887 58999999998777433436755 8999999 999999999999
Q ss_pred CCcEEEEeCC
Q 028806 144 DSMLKLWDLD 153 (203)
Q Consensus 144 d~~i~iwd~~ 153 (203)
+|+ ++|...
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=2e-22 Score=153.55 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=118.3
Q ss_pred CEEEE--EcCCCeEEEEEcCCCe---------------E-EEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCC
Q 028806 8 MKLLG--TSGDGTLSVCNLRKNT---------------V-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGY 68 (203)
Q Consensus 8 ~~l~~--~~~d~~i~vw~~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~ 68 (203)
.++++ |+.+|.|++||+.++. + +..+.+|...|.+++|+|++++|++++.|++ |++||+.+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 45555 5889999999998764 1 5778899999999999999999999999998 99999985
Q ss_pred ccccceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee--eee--------------------ccCCCC
Q 028806 69 FKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII--QPI--------------------AEHSEY 124 (203)
Q Consensus 69 ~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~--------------------~~~~~~ 124 (203)
+.++..+. +.|...|.++ |+|++++|++++.|+.|++||++.+... ..+ ......
T Consensus 228 -~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 228 -GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp -CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred -CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 56777776 2267889999 9999999999999999999999764311 111 111011
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+...++|++++++|++++.||.+++|++.....
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 346789999999999999999999999875543
No 119
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=1.7e-22 Score=157.65 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=125.1
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
.++++|++|+.||.|++||+.+++.+..+..|...|.++.| ++.++++++.|+.|++||+.+ +.++..+.+ |...+
T Consensus 264 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~v 339 (435)
T 1p22_A 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 339 (435)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred eCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeC-CcCcE
Confidence 47889999999999999999999999999999999999998 468999999999999999985 577888888 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.++ | ++.+|++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++.||.|++||+.+
T Consensus 340 ~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 340 RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 998 6 78999999999999999998765 7888888865 8999999 788999999999999999987
Q ss_pred cccCC
Q 028806 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
.....
T Consensus 415 ~~~~~ 419 (435)
T 1p22_A 415 DPAAQ 419 (435)
T ss_dssp -----
T ss_pred CCCcc
Confidence 65443
No 120
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=2.4e-21 Score=151.38 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=129.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
++++|++++.||+|++|++.+++.+..+.+|...|.++.|+ +..+++++.|+.|++||+.. +..+..+.. |...+.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-~~~~v~ 243 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHVLMG-HVAAVR 243 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEEEEC-CSSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEEEcC-CcccEE
Confidence 36789999999999999999999999999999999999985 57899999999999999975 567778888 899999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++ + ++.++++++.++.|++||+++++.+..+..|.. .|.++.| ++.+|++++.|+.|++||++++...
T Consensus 244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 88 6 788999999999999999999999999998865 8999998 8889999999999999999887654
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=2.2e-21 Score=145.09 Aligned_cols=141 Identities=8% Similarity=-0.025 Sum_probs=108.1
Q ss_pred CCCeEEEEEcC-CCeEEEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeeccCCC---ceeEE
Q 028806 15 GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN---SVDAL 87 (203)
Q Consensus 15 ~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~v~~~ 87 (203)
.|+.|++|++. +++.+..+..|...+..++|+| ++..|++++.|++|++||+.+ ++++.++.+ +.. .+.++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g-~~~~v~~v~~v 232 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMHI-DDSYQASVCHK 232 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEEC-CC---CCCEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEcC-CCcceeeeEEE
Confidence 38888899884 4777777778888888888988 679999999999999999985 677888875 432 46666
Q ss_pred -EeeCCCEE------------EEEcCCCcEEEEEccCCceeeee-----ccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 88 -LKLDEDRV------------ITGSENGLISLVGILPNRIIQPI-----AEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 88 -~~~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
|+|+|.++ ++|+.|++|++||+.+++.+..+ .+|.. .+.+.. .++.++++++.|++|+|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~--~sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGD--VKDHCAAAILTSGTIAI 309 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEE--EETTEEEEEETTSCEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccc--cCCCEEEEEcCCCcEEE
Confidence 89999887 45778899999999999887655 24533 343333 34889999999999999
Q ss_pred EeCCCcccCCC
Q 028806 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
||+.+++..+.
T Consensus 310 WDl~tGk~l~t 320 (356)
T 2w18_A 310 WDLLLGQCTAL 320 (356)
T ss_dssp EETTTCSEEEE
T ss_pred EECCCCcEEEE
Confidence 99999876544
No 122
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=5.6e-22 Score=154.92 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=122.6
Q ss_pred CcccccCCEEE----EEcCCCeEEEEEcCCC--------e---EEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEE
Q 028806 1 MTFAADAMKLL----GTSGDGTLSVCNLRKN--------T---VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~----~~~~d~~i~vw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w 64 (203)
|+|+|++++|+ +++.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +.+|++++.|++|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 47999999999 7888999999998653 1 24566778999999999997 7899999999999999
Q ss_pred EcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------CceEEEEEeCCCCe
Q 028806 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKF 137 (203)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~ 137 (203)
|++.. ........ |...+.++ |+|+|++|++|+.||.|++||++ ++....+..+.. ..|.++.|++++.+
T Consensus 178 D~~~~-~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTET-VKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSS-EEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCC-cceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99854 44444556 77889999 99999999999999999999998 555555544321 26899999999887
Q ss_pred EEEEe-CCC------cEEEEeCCCcc
Q 028806 138 LGSIS-HDS------MLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~-~d~------~i~iwd~~~~~ 156 (203)
+++.+ .+| .+++|++++..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCC
Confidence 76543 443 38999998653
No 123
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.9e-22 Score=157.61 Aligned_cols=150 Identities=9% Similarity=0.083 Sum_probs=120.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-----------CeEEEe----ecCCccceEEEEEeeCCCEEE----EecCCCeE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------NTVQTR----SEFSEEELTSVVLMKNGRKVV----CGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-----------~~~~~~----~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i 61 (203)
|++++++.++++++.++ +++|+... ...... ...+...|.+++|+|++++|+ +++.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 46889999999998887 88887531 011110 012456799999999999999 78889999
Q ss_pred EEEEcCCc-----c--cc---ceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEE
Q 028806 62 LLYSWGYF-----K--DC---SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (203)
Q Consensus 62 ~~wd~~~~-----~--~~---~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i 129 (203)
++||+... . .. +..+.+ |...|.++ |+|+ +.+|++++.||.|++||++++..+.....|.. .|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-AVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-CEEEE
T ss_pred EEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-ceeEE
Confidence 99998642 1 11 344566 78899999 9998 88999999999999999998876666666644 79999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+|+|+|++|++++.|+.|++||++
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEccC
Confidence 999999999999999999999998
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.88 E-value=3.9e-21 Score=149.37 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=131.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|++.++++++.++.|++||+.+++... .+..|...|.+++|+|++.++++++.++.|++||+.. +..+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 5789977788888889999999999988776 3456788999999999999999999999999999974 466677
Q ss_pred eeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe--------CCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS--------HDS 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------~d~ 145 (203)
+.. +...+.++ |+|++++++++ +.++.|++||+++++.+..+..+ . .+.+++|+|++++|++++ .|+
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G-LPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S-EEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C-CceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 777 78889999 99999988654 47899999999999888888765 3 689999999999999888 488
Q ss_pred cEEEEeCCCccc
Q 028806 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|++||+.++..
T Consensus 284 ~i~~~d~~~~~~ 295 (433)
T 3bws_A 284 RLGIYSMDKEKL 295 (433)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=1.1e-20 Score=144.89 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=125.6
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|++ +..++.|++||+.. +..+..+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEeC
Confidence 4799999977 677789999999999999888887655 8999999999998754 55679999999974 455555554
Q ss_pred cCCCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~ 155 (203)
...+.++ |+|+++++ ++++.++.|++||+.+++.+..+..+ . .+.+++|+|++++| ++++.++.|++||++++
T Consensus 115 --~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 115 --GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4467778 99999987 67778999999999999988888776 3 57999999999987 56678899999999887
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 191 ~~~ 193 (391)
T 1l0q_A 191 SVI 193 (391)
T ss_dssp EEE
T ss_pred eEE
Confidence 644
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=3e-20 Score=142.58 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=126.4
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.. +.....+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~- 197 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK- 197 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-
Confidence 4789999977 67888999999999999888877765 457999999999887 5677899999999975 44555554
Q ss_pred cCCCceeEE-EeeCCCEEEEEc---CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (203)
+...+.++ |+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 45567778 999999999888 68999999999999888888763 57899999999987 566789999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 275 ~~~~~ 279 (391)
T 1l0q_A 275 TNTIT 279 (391)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=1.6e-19 Score=140.26 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=119.9
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~ 74 (203)
++|||+|++|++++.++ .|++||+.+++.. .+..+...+.+++|+|+++.|+ +++.++ .|++||+.+ +. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~ 260 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 260 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EE
Confidence 47999999999998875 9999999988765 4566778899999999999887 565554 499999874 33 35
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. +...+.++ |+|+|++|++++. ++ .|++||+.+++.. .+..+.. .+.+++|+|+|++|++++.+ ..|
T Consensus 261 ~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 261 QVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred eCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEE
Confidence 6666 77788888 9999999998876 44 6777898877643 3444433 68899999999999988754 589
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||+.++...
T Consensus 338 ~~~d~~~~~~~ 348 (415)
T 2hqs_A 338 AKQDLATGGVQ 348 (415)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEE
Confidence 99999887653
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=1.4e-19 Score=140.62 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=126.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.++.|++|++.+++.+..+..|...+.+++|+|++..++ +++.++.|++||+.. +..+..+..
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~- 252 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK- 252 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC-
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC-
Confidence 46889999999999999999999999988888888888999999999999885 455799999999974 455555554
Q ss_pred CCCceeEE-EeeCCCEEEEEc--------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGS--------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i 149 (203)
...+.++ |+|+++++++++ .++.|++||+.+++.+..+... . .+.+++|+|+++++ ++++.++.|++
T Consensus 253 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 253 -IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-NKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp -CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E-CEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C-CcceEEECCCCCEEEEEecCCCEEEE
Confidence 3457777 899999999888 4889999999998877666332 3 68899999999765 55678999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+.++...
T Consensus 330 ~d~~~~~~~ 338 (433)
T 3bws_A 330 YDLKEKKVQ 338 (433)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999876543
No 129
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.84 E-value=2.8e-20 Score=142.24 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CcccccCCEEEEEcCCC----eEEEEEcCCCeE----EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDG----TLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~----~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
++|+|+++++++++.++ .+++|++..... ...+..|...|++++|+|++++|++|+.|++|++||+.+ +.+
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~ 303 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSM 303 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcE
Confidence 47999999999998776 688999876543 345678889999999999999999999999999999985 456
Q ss_pred cee-eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 73 SDR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 73 ~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+.. +.+ |...|+++ |+|+|++|++++.|++|+||++..
T Consensus 304 ~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 655 467 99999999 999999999999999999999864
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.82 E-value=1.2e-18 Score=135.40 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=116.8
Q ss_pred CcccccCCEEE-EEcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~ 74 (203)
++|+|+|++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|++++|++++. ++ .|++||+.. + ...
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~-~~~ 304 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-G-APQ 304 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-S-CCE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-C-CEE
Confidence 47999999887 555555 499999998876 567778888999999999998888775 44 677778764 2 234
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +...+..+ |+|+|++|++++.+ ..|++||+.+++.. .+..+ . .+.+++|+|+|++|++++.++ .|
T Consensus 305 ~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 305 RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 4555 56677778 99999999988764 57999999988764 45555 3 689999999999999888776 79
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++||+.+..
T Consensus 381 ~~~d~~g~~ 389 (415)
T 2hqs_A 381 NLVSTDGRF 389 (415)
T ss_dssp EEEETTSCC
T ss_pred EEEECCCCc
Confidence 999987554
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.80 E-value=1.1e-18 Score=144.24 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=111.2
Q ss_pred CcccccCCEEEEEcC-CC-----eEEEEEcCCCeEEEeecCCc------------------------cceEEEEEeeCCC
Q 028806 1 MTFAADAMKLLGTSG-DG-----TLSVCNLRKNTVQTRSEFSE------------------------EELTSVVLMKNGR 50 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~-----~i~vw~~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~ 50 (203)
++|||||++|++++. ++ .|++|++.+++....+..+. ..+.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999988 88 89999999987766655432 2378899999999
Q ss_pred EEEEecCCCeEEEEEcCCccc--cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC---
Q 028806 51 KVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--- 124 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--- 124 (203)
+|++++. +.|++||+.. +. ....+.. +...+..+ |+|+|++|++++. +.|++||+.+++.......+...
T Consensus 122 ~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQ-EGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EEEEEET-TEEEEEESSS-CSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EEEEEeC-CcEEEEECCC-CCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceec
Confidence 9998886 8999999974 31 4455666 67778888 9999999998874 58999999988776554443220
Q ss_pred ------------ceEEEEEeCCCCeEEEEeCCC
Q 028806 125 ------------PIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 125 ------------~i~~i~~~~~~~~l~~~~~d~ 145 (203)
.+..++|+|||++|++++.|+
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 147799999999999987665
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=7.2e-19 Score=144.85 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=107.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEecCC---------CeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQS---------GTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~ 68 (203)
++|+|+|+++++ +.||+|++|++.+++....+..+.. .|.+++|+|||++|++++.+ +.+++||+..
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999997766 7889999999999887777766654 48999999999999988764 7889999975
Q ss_pred ccccceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-----------------ceEE
Q 028806 69 FKDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIES 128 (203)
Q Consensus 69 ~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~i~~ 128 (203)
. .. ..+.. .+...+..+ |+|+|+.|++++. +.|++|++.+++.......+... .+.+
T Consensus 101 ~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 101 G-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp C-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred C-ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 3 33 33332 033347777 9999999999886 78999999988777655543221 1278
Q ss_pred EEEeCCCCeEEEEeCC
Q 028806 129 LALSHDRKFLGSISHD 144 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d 144 (203)
++|+|||++|++++.+
T Consensus 178 ~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988754
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=8.1e-18 Score=123.51 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=114.7
Q ss_pred CcccccCCEEEEEcC--CC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSG--DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|++++|++++. ++ .|.+|++.++.. ..+..+ ..+..++|+|+++.|+ ++..++.+.+|++.........
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 579999999999883 33 455555555543 344433 3488999999999877 6778899999997543344455
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--------
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-------- 144 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------- 144 (203)
+.. +...+.++ |+|++++|++++ .++.+.+|++. .+.....+..+.. .+.++.|+|++++|++++.+
T Consensus 168 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 666 67788888 999999888766 48889999986 4556666766643 78899999999999888765
Q ss_pred ---CcEEEEeCCCccc
Q 028806 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
+.|++||+.++..
T Consensus 246 ~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SEEEEEEEEETTSCSC
T ss_pred cCceEEEEEecCCCCc
Confidence 5699999987654
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.78 E-value=3.7e-17 Score=131.01 Aligned_cols=151 Identities=8% Similarity=0.055 Sum_probs=124.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc--CCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~ 79 (203)
+|+|++.++++++.+++|.+||..+++++..+..+.. +..++|+|++++|++++.++.|.+||+ .+ ...+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKI- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEEC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEec-
Confidence 4788999999999999999999999999888874333 889999999999999999999999999 54 455666654
Q ss_pred CCCceeEE-Eee----CCCEEEEEcC-CCcEEEEEccCCceeeeeccC----------CCCceEEEEEeCCCCe-EEEEe
Q 028806 80 SPNSVDAL-LKL----DEDRVITGSE-NGLISLVGILPNRIIQPIAEH----------SEYPIESLALSHDRKF-LGSIS 142 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~-l~~~~ 142 (203)
...+..+ |+| +|+++++++. ++.|.+||..+++++..+..+ ....+.++.++|++.. +++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 4456777 999 9999999885 899999999999988877642 2336889999998765 45666
Q ss_pred CCCcEEEEeCCCcc
Q 028806 143 HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (203)
.++.|.+||+.+..
T Consensus 300 ~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 300 ETGKVLLVNYKDID 313 (543)
T ss_dssp TTTEEEEEECTTSS
T ss_pred CCCeEEEEEecCCC
Confidence 88999999998743
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=9.9e-17 Score=121.06 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcc---------ceEEEEEeeCCCEEEEec--CCCeEEEEEcCC
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~ 68 (203)
++|+|+++++ ++...++.|.+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 4689999965 4556679999999999988777765432 278899999999887766 478999999974
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CCceEEEEEeCCCCeEEEEeC-
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISH- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~- 143 (203)
+.....+.. +...+..+ |+|+++++++++.++.|.+||+.+++.+..+.... ...+..++|+|++++|++++.
T Consensus 174 -~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 -IKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp -TEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred -CceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 455555553 34446677 89999999999999999999999998887765411 225778999999998877664
Q ss_pred CCcEEEEeCCCcccC
Q 028806 144 DSMLKLWDLDDILKG 158 (203)
Q Consensus 144 d~~i~iwd~~~~~~~ 158 (203)
++.|.+||+.++...
T Consensus 252 ~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 252 AAEVLVVDTRNGNIL 266 (353)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEE
Confidence 589999999877643
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=2.2e-17 Score=121.16 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=111.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCC-ccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFS-EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|++++|++++ ++.|++|++.+ ++.......+ ...+.+++|+|++++|++++ .++...+|.+.........+
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence 47999999999986 68999999998 8776666555 36788999999999999988 33456666554323334444
Q ss_pred eccCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.. + ..+..+ |+|++++|+ ++..++.+.+|++.. +.....+..+.. .+.+++|+|++++|++++ .++.+.+|++
T Consensus 126 ~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 126 TK-N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp CS-S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ec-C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEEEEecCCCCccEEEE
Confidence 43 3 347777 999999887 677889899998643 233344555534 799999999999888766 5889999987
Q ss_pred C
Q 028806 153 D 153 (203)
Q Consensus 153 ~ 153 (203)
.
T Consensus 203 ~ 203 (297)
T 2ojh_A 203 R 203 (297)
T ss_dssp E
T ss_pred C
Confidence 5
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=3.8e-17 Score=122.39 Aligned_cols=150 Identities=10% Similarity=0.012 Sum_probs=116.0
Q ss_pred CcccccCCEEEEEc------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTS------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|++||+..
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 46899999988885 579999999999888777664 4457889999999988887 57899999864
Q ss_pred ccccceeeec-----------------------------------------------------------------cCCCc
Q 028806 69 FKDCSDRFVG-----------------------------------------------------------------LSPNS 83 (203)
Q Consensus 69 ~~~~~~~~~~-----------------------------------------------------------------~~~~~ 83 (203)
. .....+.. .+...
T Consensus 164 ~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 G-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp T-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred C-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 2 22211110 01112
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..+ |+|++++++++ ++.|.+||+.+++.+..+..+ . .+.+++|+|++++|++++.++.|.+||+.++...
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-C-ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 3346 89999999888 689999999999888777655 3 5789999999999999889999999999887654
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=9.8e-17 Score=121.08 Aligned_cols=154 Identities=9% Similarity=0.046 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++++++. .++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.+.+||+.+ +.....+..
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEc
Confidence 46899999877765 478999999999998888875566688899999999999999999999999975 344444332
Q ss_pred ---cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 79 ---LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ---~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+...+..+ |+|+++++++++. ++.|.+||+.+++.+..+.... + ..++|+|+++++++++ .++.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~-~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S-LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C-CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C-ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 023345667 8999998877765 4899999999999888777652 2 5689999999776666 6899999999
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 302 ~~~~~~ 307 (353)
T 3vgz_A 302 KSYKVV 307 (353)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 887654
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.76 E-value=5.6e-17 Score=129.97 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=119.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCccceEEEEEee----CCCEEEEecC-CCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMK----NGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~~wd~~~~~~~~ 73 (203)
++|+|+|++|++++.+++|.+||+ .+++.+..+.. ...+..++|+| ++++|++++. +++|.+||..+ .+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 469999999999999999999999 88888888874 45689999999 9999999885 89999999875 4555
Q ss_pred eeeeccC-----------CCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeE
Q 028806 74 DRFVGLS-----------PNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 74 ~~~~~~~-----------~~~v~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l 138 (203)
..+.. + ...+..+ ++|++..+ ++...++.|.+||+.+.+.+. .+. +.. .+..+.|+|++++|
T Consensus 262 ~~i~~-~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~spdg~~l 338 (543)
T 1nir_A 262 QIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEECTTSCEE
T ss_pred eeecc-cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceECCCCCEE
Confidence 55543 2 2256777 88876654 556678999999998765443 333 223 57889999999987
Q ss_pred EEEe-CCCcEEEEeCCCcccC
Q 028806 139 GSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++ .++.|.+||+.++...
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE
T ss_pred EEEecCCCeEEEEECCCCeEE
Confidence 7665 6889999999887643
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=9.8e-17 Score=120.44 Aligned_cols=151 Identities=14% Similarity=0.200 Sum_probs=110.8
Q ss_pred CcccccCCEEEEEcCC-CeEEEEEcC--CCe--EEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCC--cccc
Q 028806 1 MTFAADAMKLLGTSGD-GTLSVCNLR--KNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY--FKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~--~~~~ 72 (203)
++|+|++++|++++.+ +.|.+|++. ++. .+..+..+. .+..++|+|++++|++++. ++.|.+||+.. ....
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4799999988888776 999999997 554 334444433 7889999999998876654 88999999941 1223
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cceee----eeccCCCCceEEEEEeCCCCeEEEEe-CC
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRIIQ----PIAEHSEYPIESLALSHDRKFLGSIS-HD 144 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d 144 (203)
...+.. ...+.++ |+|+++++++++ .++.|.+|++.+ ++... .+..+....+..++|+|++++|++++ .+
T Consensus 122 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 122 VDVVEG--LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEECC--CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccccC--CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 333333 3456777 999999888877 789999999987 65432 22333233688999999999876655 78
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 200 ~~i~~~~~~~ 209 (343)
T 1ri6_A 200 SSVDVWELKD 209 (343)
T ss_dssp TEEEEEESSC
T ss_pred CEEEEEEecC
Confidence 9999999954
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=1.5e-16 Score=119.30 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=114.6
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCe-EEEEEcCCccccc--
Q 028806 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT-VLLYSWGYFKDCS-- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~~wd~~~~~~~~-- 73 (203)
++|+|++++|+++..++ .|.+|++.+++.+..+..+ ..+.+++|+|++++++++ ..++. +.+|++...+...
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 46899999998655553 8999999999888777653 456899999999866554 45577 9999987433221
Q ss_pred -eeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce---eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCc
Q 028806 74 -DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~ 146 (203)
..... ....+..+ |+|+|+++++++ .++.|.+||+.+++. +..+..+ . .+..++|+|+|++|++++ .++.
T Consensus 168 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 168 GQEFIS-GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-N-LPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEC-SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-S-CCCCEEECTTSSEEEEECSSEEE
T ss_pred CCcccc-CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-C-CCceEEECCCCCEEEEEEcCCCE
Confidence 11112 33456777 999999766554 588999999999887 7777655 3 578899999999877665 5778
Q ss_pred EEEEeCCCccc
Q 028806 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|.+||+.++..
T Consensus 245 i~~~d~~~~~~ 255 (331)
T 3u4y_A 245 VFNFNQLSGTL 255 (331)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 99999988765
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=3.7e-16 Score=117.17 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=114.0
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-ceeeec
Q 028806 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~-~~~~~~ 78 (203)
.|.+++++ +++...++.|.+||+.+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+... .. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEeccc
Confidence 35666665 6777888999999999998887777666667 9999999997766655 889999999753 44 556665
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCc-EEEEeC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSM-LKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~-i~iwd~ 152 (203)
+..+..++ |+|++++++++..++ .|.+||+.+++.+..+..+ . ...+++|+|+|++|++++ .++. |.+|++
T Consensus 82 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 -GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-Y-DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-T-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-C-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 66666646 999999999655553 8999999999888877665 3 578999999998766554 5578 999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
..
T Consensus 159 ~~ 160 (331)
T 3u4y_A 159 DA 160 (331)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=2.1e-17 Score=136.18 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=113.0
Q ss_pred CcccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeec---CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
++|||||++|++++.+ +.|++||+.+++. ..+. .+...+..++|+|||+.|++++. +.|++|++..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 3699999999998764 7899999998765 3333 34445888999999999998876 7899999874
Q ss_pred ccccceeeeccCCCce------------------eEE-EeeCCCEEEEEcCCC---------------------------
Q 028806 69 FKDCSDRFVGLSPNSV------------------DAL-LKLDEDRVITGSENG--------------------------- 102 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v------------------~~~-~~~~~~~l~~~~~d~--------------------------- 102 (203)
+........ +...+ ..+ |+|+|++|++++.++
T Consensus 144 -g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 144 -KQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp -SCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred -CceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 344333332 22222 567 999999999887542
Q ss_pred -------cEEEEEccCCceeeeeccCC-----CCceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCccc
Q 028806 103 -------LISLVGILPNRIIQPIAEHS-----EYPIESLALSHDRKFLGSISH----DSMLKLWDLDDILK 157 (203)
Q Consensus 103 -------~i~~~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 157 (203)
.|++||+.+++....+..+. ...+..++|+|||++|++... +..|++||+.++..
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 79999998887655555431 236889999999998876653 35799999987653
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.73 E-value=4.6e-17 Score=134.51 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=115.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|||||++|++++. +.|++|++.++. ....+..+...+..++|+|||++|++++ ++.|++||+.. +........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 479999999999887 999999999872 3345667778899999999999999887 46899999974 333332222
Q ss_pred cCCCc----------------eeEE-EeeCCCEEEEEcCCC---------------------------------cEEEEE
Q 028806 79 LSPNS----------------VDAL-LKLDEDRVITGSENG---------------------------------LISLVG 108 (203)
Q Consensus 79 ~~~~~----------------v~~~-~~~~~~~l~~~~~d~---------------------------------~i~~~d 108 (203)
+... +..+ |+|+|++|++++.++ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 3667 999999999987665 788999
Q ss_pred ccC-Cceeeeecc--CCCCceEEEEEeCCCCeEEEEeC-----CCcEEEEeCCCccc
Q 028806 109 ILP-NRIIQPIAE--HSEYPIESLALSHDRKFLGSISH-----DSMLKLWDLDDILK 157 (203)
Q Consensus 109 ~~~-~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~ 157 (203)
+.+ ++....... + ...+..++| |||++|++++. +..|++||+.++..
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQ-DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp SSTTCCCEEECCCSCS-SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred CCCCCceEEecCCCCc-ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 988 776554432 4 337899999 99999987664 56799999988754
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=135.07 Aligned_cols=139 Identities=16% Similarity=0.076 Sum_probs=102.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~ 68 (203)
++|+|+|+++++ +.+++|++|++.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+..
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 479999965555 4689999999999887766655433 3889999999999998876 68999999974
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----------------EEEE
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----------------ESLA 130 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----------------~~i~ 130 (203)
+..+.... ....+..+ |+|+|+.|+++. ++.|++|++.+++............| .+++
T Consensus 100 -g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 100 -GEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp -TEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred -Ccccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 33311011 12346667 999999999885 67999999988876543322111112 4799
Q ss_pred EeCCCCeEEEEeCC
Q 028806 131 LSHDRKFLGSISHD 144 (203)
Q Consensus 131 ~~~~~~~l~~~~~d 144 (203)
|+|||++|++++.|
T Consensus 176 wSPDG~~la~~~~d 189 (719)
T 1z68_A 176 WSPNGKFLAYAEFN 189 (719)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCEEEEEEEC
Confidence 99999999988754
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.72 E-value=8.1e-17 Score=137.87 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=123.7
Q ss_pred Cccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceEEEEEeeCCCEEEEecCCCeEE-EEEcCCccccceeee
Q 028806 1 MTFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVL-LYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~s-p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-~wd~~~~~~~~~~~~ 77 (203)
++|| |+|++|++++ ++.|++|++.++.... +..+.. .+..++|+ +++.|++++.+..+. +|++.. +. ...+.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~ 375 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFE 375 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECC
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEec
Confidence 4689 9999998887 6899999998876543 556666 89999999 999999888888888 889863 23 33444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC----------c
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----------M 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----------~ 146 (203)
. +...+..+ |+|+|++|++++.++.|++||+.+++....+..|.. .+.+++|+|+|++|++++.++ .
T Consensus 376 ~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 376 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred C-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 6 77788888 999999999999999999999999988877767744 789999999999999887644 8
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+.++.
T Consensus 454 i~l~d~~~g~ 463 (1045)
T 1k32_A 454 IHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998765
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=8.7e-16 Score=116.07 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=106.7
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~-- 72 (203)
|+|+|+|+ |++++. ++.|++|++.++. .+..+..+...+..++|+|++++|++++ .++.+.+|++...+..
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 47899999 555443 6899999998765 3344444566788999999999888877 6899999999632221
Q ss_pred ceeeeccC--------CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-CCceee--eeccCCCCceEEEEEeCCCCeEEE
Q 028806 73 SDRFVGLS--------PNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRIIQ--PIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~--------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
+..+.... ...+.++ |+|+|+++++...++.|.+|++. +++... .+..+....+..++|+|+|++|++
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 22222100 1236667 89999966666678899999998 454332 222222335788999999997766
Q ss_pred E-eCCCcEEEEeCCC
Q 028806 141 I-SHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~-~~d~~i~iwd~~~ 154 (203)
+ ..++.|.+|++..
T Consensus 204 ~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 204 AGELSSQIASLKYDT 218 (347)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEEecC
Confidence 5 4678999999874
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.70 E-value=5.9e-16 Score=132.58 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=123.2
Q ss_pred CcccccCCEEEEEcCCCeEE-EEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~-vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+ +|+.|++++.++.+. +|++.++.... +..|...+..++|+|++++|++++.++.|++||+.+ +.....+..
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~- 418 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS- 418 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccC-
Confidence 3688 999999988888899 99998876544 447778899999999999999999999999999974 455555556
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC----------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENG----------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~----------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+...+..+ |+|+|++|++++.++ .|++||+.+++ ...+..|.. .+..++|+|+|++|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~-~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS-HDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-BEEEEEECTTSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc-ccCCceEcCCCCEEEEEecccCCc
Confidence 78888888 999999999887644 89999999877 556666644 688999999999999999888888
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
+|+....
T Consensus 497 ~~~~~~~ 503 (1045)
T 1k32_A 497 SPDRVVL 503 (1045)
T ss_dssp EECSSSS
T ss_pred Ccchhcc
Confidence 8886543
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=2.7e-16 Score=129.32 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=111.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~ 76 (203)
++|||+ +.++.+. ++.|++||+.+++.... ..+...+.+++|+|+|+.|+++ .++.|++|++... +......
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 468999 6666554 49999999998876543 3456678889999999999985 6799999999741 3333322
Q ss_pred eccCCCc--------------eeEE-EeeCCCEEEEEc---------------------------------CCCcEEEEE
Q 028806 77 VGLSPNS--------------VDAL-LKLDEDRVITGS---------------------------------ENGLISLVG 108 (203)
Q Consensus 77 ~~~~~~~--------------v~~~-~~~~~~~l~~~~---------------------------------~d~~i~~~d 108 (203)
.. +... +.++ |+|+|++|++++ .+..|++||
T Consensus 163 ~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 163 ID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp SC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred cC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 22 2222 3677 999999999987 346799999
Q ss_pred ccCCceeeeec--cCCCCceEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCc
Q 028806 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (203)
+.+++...... .+ ...+.+++|+|+|++|++++.++ .|++||+.++
T Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 242 LATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp TTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 99887654443 23 23689999999999999887765 8999999887
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.70 E-value=2.1e-15 Score=114.60 Aligned_cols=150 Identities=10% Similarity=0.161 Sum_probs=104.3
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCe-------E------EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEE
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNT-------V------QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~~-------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 65 (203)
++|+|+|++|+++ ..++.|++|++.... + ......+...+..++|+|+++++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 4689999976554 458899999887432 1 111223445678999999999887766 689999999
Q ss_pred cCCcccc--ceeeec--cCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEcc--CCc--eeeeeccCCCCceEEEEEeCC
Q 028806 66 WGYFKDC--SDRFVG--LSPNSVDAL-LKLDEDRVITGSEN--GLISLVGIL--PNR--IIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 66 ~~~~~~~--~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d--~~i~~~d~~--~~~--~~~~~~~~~~~~i~~i~~~~~ 134 (203)
+.. +.. +..+.. .+......+ |+|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|+
T Consensus 240 ~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spd 316 (361)
T 3scy_A 240 YAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPN 316 (361)
T ss_dssp EET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTT
T ss_pred ecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCC
Confidence 973 222 222221 022345677 99999999777664 889999985 454 3333433 225789999999
Q ss_pred CCeEEEEe-CCCcEEEEeCC
Q 028806 135 RKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~ 153 (203)
|++|++++ .++.|.+|.+.
T Consensus 317 g~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 317 GKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 99998888 67889996543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.70 E-value=3.1e-15 Score=113.00 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEE--EeecC-CccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCc-ccc--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQ--TRSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~-~~~-- 72 (203)
++|+|+|+++++...++.|++|++. ++... ..+.. ....+..++|+|+++++++ ...++.+.+|++... +..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 4689999966777778999999998 55432 22222 2346788999999996665 556889999998631 221
Q ss_pred ceeeeccCC------CceeEE-EeeCCCEEEEE-cCCCcEEEEEccC-C--ceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 73 SDRFVGLSP------NSVDAL-LKLDEDRVITG-SENGLISLVGILP-N--RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~~~~~~~~~------~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~-~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+..+.. .. ..+..+ |+|+|++|+++ ..++.|.+|++.. + +.+..+..+.. .+..++|+|++++|+++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEE
T ss_pred eeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEE
Confidence 222222 11 346677 99999988554 4588999999863 2 34455555433 57899999999999888
Q ss_pred eC-CCcEEEEe--CCCcc
Q 028806 142 SH-DSMLKLWD--LDDIL 156 (203)
Q Consensus 142 ~~-d~~i~iwd--~~~~~ 156 (203)
+. ++.|.+|+ ..++.
T Consensus 304 ~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGK 321 (347)
T ss_dssp ETTTTEEEEEEECTTTCC
T ss_pred EcCCCcEEEEEEeCCCCe
Confidence 75 48999994 44444
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=2.1e-16 Score=127.47 Aligned_cols=143 Identities=6% Similarity=-0.033 Sum_probs=111.4
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028806 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~ 76 (203)
+|+|+++. +++...++.+.+|++.+++.......+ . .+++|+|||++|++++.+ ..|++||+.. +. ...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l 190 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVF 190 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEE
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEe
Confidence 58888863 333344455669999988765544332 2 789999999999987776 7899999864 33 4466
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCCceEEEE--------EeCCCCeEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEYPIESLA--------LSHDRKFLGSISHDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~--------~~~~~~~l~~~~~d~ 145 (203)
.. +...+..+ |+|+|++|+++..++ .|++||+.+++.. .+..+.. .+..+. |+|||.++++++.++
T Consensus 191 ~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 191 DS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 76 77788888 999999999888888 8999999988887 6666633 566666 999998888999999
Q ss_pred cEEEEeC
Q 028806 146 MLKLWDL 152 (203)
Q Consensus 146 ~i~iwd~ 152 (203)
.+++|++
T Consensus 268 ~~~l~~~ 274 (582)
T 3o4h_A 268 RSAVFID 274 (582)
T ss_dssp EEEEEET
T ss_pred cEEEEEE
Confidence 9999999
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.69 E-value=3.8e-16 Score=117.60 Aligned_cols=149 Identities=8% Similarity=0.010 Sum_probs=109.3
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeE---EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++|+|+|++|++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+++ +++++. .|++||
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d 172 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMD 172 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEEC
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEe
Confidence 4689999999988755 8999999987432 223332 33588899999999 555543 499999
Q ss_pred cCCccccceeeeccCC----------------------------------------------------------------
Q 028806 66 WGYFKDCSDRFVGLSP---------------------------------------------------------------- 81 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 81 (203)
+.+ +.....+.. ..
T Consensus 173 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 173 VKT-GKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp TTT-CCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred CCC-Cceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 864 333333221 11
Q ss_pred ----CceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 82 ----NSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 82 ----~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+..+ ++| ++++++++ ++.|.+||+.+++.+..+... . .+.+++|+|++++|++++.++.|.+||+.++
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-C-CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 022334 578 99999888 789999999999888777654 2 4778999999999988888999999999887
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
+...
T Consensus 327 ~~~~ 330 (349)
T 1jmx_B 327 EKVK 330 (349)
T ss_dssp EEEE
T ss_pred ceee
Confidence 6543
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.69 E-value=1.1e-15 Score=115.01 Aligned_cols=151 Identities=10% Similarity=0.027 Sum_probs=113.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+ +.....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEc
Confidence 4678889999999999999999999998887776443 2577899999998665 555689999999974 344444442
Q ss_pred cCC------CceeEE-EeeCCCEEEEEcCC------------CcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCC
Q 028806 79 LSP------NSVDAL-LKLDEDRVITGSEN------------GLISLVGILPNRII---QPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~------~~v~~~-~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.. ..+..+ |+|+|+++++++.+ +.|.+||+.+++.. ..+..+ . .+.+++|+|+++
T Consensus 84 -~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~ 160 (349)
T 1jmx_B 84 -SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-R-QVYLMRAADDGS 160 (349)
T ss_dssp -CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-S-SCCCEEECTTSC
T ss_pred -ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-C-cccceeECCCCc
Confidence 22 226677 89999999998865 89999999885433 333333 3 578899999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028806 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++ +.|++||+.++...
T Consensus 161 -l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 161 -LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp -EEEES--SSEEEECTTTCCEE
T ss_pred -EEEcc--CcEEEEeCCCCcee
Confidence 65554 34999999887643
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=6.2e-16 Score=124.71 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=104.9
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecC---CCeEEEEEcCC--ccc--
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY--FKD-- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~--~~~-- 71 (203)
++|+|||++||+++. +|+++||++.++.... +..+. ..+..++|+|+ +.+++++. +....+|.+.. .+.
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 468999999999876 9999999997766544 33333 46777777777 55555443 33344443321 110
Q ss_pred --------------------------------------cceeeeccCCCceeEE-EeeCCCEEEEEcCC----CcEEEEE
Q 028806 72 --------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN----GLISLVG 108 (203)
Q Consensus 72 --------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----~~i~~~d 108 (203)
....+.. +.. .++ |+|+|++|++++.+ +.|++||
T Consensus 105 ~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 105 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 0011111 111 455 89999999988776 7799999
Q ss_pred ccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcccC
Q 028806 109 ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS--MLKLWDLDDILKG 158 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 158 (203)
+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.++...
T Consensus 182 ~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 182 LSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp TTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9888765 5566644 789999999999999888888 8999999887655
No 156
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=9.6e-16 Score=115.01 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=104.4
Q ss_pred EEEEEcCCCeEEEEEcC-CC--eEEEeecCCccceEEEEEeeCCCEEEEecCC-CeEEEEEcCCc-cc--cceeeeccCC
Q 028806 9 KLLGTSGDGTLSVCNLR-KN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF-KD--CSDRFVGLSP 81 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~-~~--~~~~~~~~~~ 81 (203)
.+++++.++.|++|++. ++ ..+..+ .+...+.+++|+|++++|++++.+ +.|.+|++... +. .+..+.. +.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CC
Confidence 44455789999999995 33 333333 356678899999999988888876 99999999621 12 2333443 33
Q ss_pred CceeEE-EeeCCCEEEEEcC-CCcEEEEEcc---CCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 82 NSVDAL-LKLDEDRVITGSE-NGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
.+..+ |+|+++++++++. ++.|.+|++. ..+.+..+..+ . .+.+++|+|++++|++++ .++.|++||+.+
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-D-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-T-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-C-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 67777 9999998877665 7889999994 44455555554 3 588999999999888887 889999999986
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.67 E-value=4.1e-15 Score=111.32 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=113.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcc--ceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeeccCC---
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 81 (203)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.+ +++..++.|.+||+.+ +..+..+.. ..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEc-CCccc
Confidence 4788999999999999999988877764332 47889999999766 4556688999999974 455544442 21
Q ss_pred --CceeEE-EeeCCCEEEEEc------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 82 --NSVDAL-LKLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+..+ |+|+|+++++++ .++.|.+||+.+++.+..+... . .+.+++|+|++++|+++ ++.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEE--SSS
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-C-CcceeEECCCCCEEEEe--CCe
Confidence 145667 899999999886 5789999999988887777654 3 57889999999988887 688
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++||+.++...
T Consensus 156 i~~~d~~~~~~~ 167 (337)
T 1pby_B 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEe
Confidence 999999887643
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.67 E-value=3.6e-15 Score=122.64 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=113.7
Q ss_pred CcccccCCEEEEEc---------------------------------CCCeEEEEEcCCCeEEEeec--CCccceEEEEE
Q 028806 1 MTFAADAMKLLGTS---------------------------------GDGTLSVCNLRKNTVQTRSE--FSEEELTSVVL 45 (203)
Q Consensus 1 l~~sp~~~~l~~~~---------------------------------~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 45 (203)
++|||||++|++++ .+..|++||+.+++...... .+...+.+++|
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW 265 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE
Confidence 36999999999887 44789999999987655442 45677999999
Q ss_pred eeCCCEEEEecCCC-----eEEEEEcCCccccceeee-ccCCC---ceeEE-Eee--CCCEEEEEcCCCcEEEEEcc-CC
Q 028806 46 MKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFV-GLSPN---SVDAL-LKL--DEDRVITGSENGLISLVGIL-PN 112 (203)
Q Consensus 46 ~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~-~~~~~---~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~-~~ 112 (203)
+|+++.|++++.++ .|++||+.+ +.....+. ..... .+..+ |+| +|++++++..++.++||.+. ++
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 99999999877665 899999975 32223322 10221 23556 899 99999999999999999886 56
Q ss_pred ceeeeeccCCCCceEE-EEEeCCCCeEEEEeC-CC----cEEEEeCCCcc
Q 028806 113 RIIQPIAEHSEYPIES-LALSHDRKFLGSISH-DS----MLKLWDLDDIL 156 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~-d~----~i~iwd~~~~~ 156 (203)
..+..+..+.. .+.. ++|+|+++.|+.++. ++ .|..||+.++.
T Consensus 345 ~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 345 RLIRQVTKGEW-EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEEEECCCSSS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CEEEecCCCCe-EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 67777776643 6766 799999998876654 33 67777876654
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=131.54 Aligned_cols=153 Identities=14% Similarity=0.023 Sum_probs=106.9
Q ss_pred CcccccCCEEEEEcC---------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++|++... .
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~ 141 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-P 141 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-C
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC-C
Confidence 369999999998876 6899999999987621111 124588899999999999875 789999999643 3
Q ss_pred cceee-eccCCCc-----------------eeEE-EeeCCCEEEEEcCCC------------------------------
Q 028806 72 CSDRF-VGLSPNS-----------------VDAL-LKLDEDRVITGSENG------------------------------ 102 (203)
Q Consensus 72 ~~~~~-~~~~~~~-----------------v~~~-~~~~~~~l~~~~~d~------------------------------ 102 (203)
..... .+ +... ..++ |+|+|++|++++.+.
T Consensus 142 ~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 142 PFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred cEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 32221 11 1111 1467 999999999887542
Q ss_pred ----cEEEEEccCCcee---e-----eeccCCCCceEEEEEeCCCCeEEEEeCC----CcEEEEe----CCCcccC
Q 028806 103 ----LISLVGILPNRII---Q-----PIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWD----LDDILKG 158 (203)
Q Consensus 103 ----~i~~~d~~~~~~~---~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~ 158 (203)
.|++||+.+++.+ . .+..+.. .+..++|+||++++++.... ..|.+|| +.++...
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 6889999877642 1 1234533 68999999998777664422 2488999 7666543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=1.4e-15 Score=126.05 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----eEEEEEeeCCCEEEEecCC---------CeEEEEEc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQS---------GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~~wd~ 66 (203)
++|+|+|++|+++ +++|++|++.+++....+..|... ...++|+|||++|+.++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999988886 899999999999877777766532 2447899999999988775 56779999
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-cCCCCce-----------------E
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPI-----------------E 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i-----------------~ 127 (203)
.+ +. ...+.. +...+... |+|+|+.|+.+ .++.|++|++.++....... ++.. .+ .
T Consensus 100 ~~-~~-~~~l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 100 NK-RQ-LITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED-IIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TT-TE-ECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT-TEEESBCCHHHHHHTSSSSB
T ss_pred CC-Cc-EEEccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc-ceecCcccccccchhcCCCc
Confidence 75 33 334555 66778888 99999999988 46789999998877554322 2211 12 3
Q ss_pred EEEEeCCCCeEEEEeC
Q 028806 128 SLALSHDRKFLGSISH 143 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~ 143 (203)
.+.|+|||++|+..+.
T Consensus 175 ~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQF 190 (740)
T ss_dssp CEEECTTSSEEEEEEE
T ss_pred ceEECCCCCEEEEEEE
Confidence 4899999999998763
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=4.3e-15 Score=113.33 Aligned_cols=152 Identities=9% Similarity=0.092 Sum_probs=106.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEEEeecCC-ccceEEEEEeeCCCE--EEEec-------------CCCeEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFS-EEELTSVVLMKNGRK--VVCGS-------------QSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~~ 63 (203)
++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++ .++.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4789999999888887 99999997 77664432211 123456889999984 45553 6899999
Q ss_pred EEcCCccccceeeec---cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc-CCcee--eeeccCC-CCceEEEEEeCC
Q 028806 64 YSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL-PNRII--QPIAEHS-EYPIESLALSHD 134 (203)
Q Consensus 64 wd~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~~~~-~~~i~~i~~~~~ 134 (203)
|++...+.....+.. .+...+.++ |+|+|+++++++. ++.|++|++. +++.. ..+.... ...+..++|+|+
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd 203 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC
Confidence 999643443333321 023457777 9999998887664 6789999998 67643 2333111 235889999999
Q ss_pred CCeEEEEeC-CCcEEEEeCC
Q 028806 135 RKFLGSISH-DSMLKLWDLD 153 (203)
Q Consensus 135 ~~~l~~~~~-d~~i~iwd~~ 153 (203)
|++|++++. ++.|.+|++.
T Consensus 204 g~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 204 GNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEEEe
Confidence 999988774 6899999764
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.63 E-value=7.6e-14 Score=106.43 Aligned_cols=153 Identities=8% Similarity=0.002 Sum_probs=104.7
Q ss_pred CcccccCCE--EEEEc-------------CCCeEEEEEcC-CCeEEEeec----CCccceEEEEEeeCCCEEEEecC-CC
Q 028806 1 MTFAADAMK--LLGTS-------------GDGTLSVCNLR-KNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ-SG 59 (203)
Q Consensus 1 l~~sp~~~~--l~~~~-------------~d~~i~vw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~ 59 (203)
++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|++++. ++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 478999994 44553 68999999997 455543333 24567899999999998887654 67
Q ss_pred eEEEEEcCCcccc--ceeeec-cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCcee------eeeccCC-C-C
Q 028806 60 TVLLYSWGYFKDC--SDRFVG-LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRII------QPIAEHS-E-Y 124 (203)
Q Consensus 60 ~i~~wd~~~~~~~--~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~------~~~~~~~-~-~ 124 (203)
.|++|++...+.. +..+.. .+...+..+ |+|+|+++++++. ++.|.+|++. +++.. ..+.... . .
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999999621222 122321 024457777 9999999988775 6889999865 45542 1222110 1 1
Q ss_pred -------ceEEEE-EeCCCCeEEEEeCC-C-----cEEEEeCC
Q 028806 125 -------PIESLA-LSHDRKFLGSISHD-S-----MLKLWDLD 153 (203)
Q Consensus 125 -------~i~~i~-~~~~~~~l~~~~~d-~-----~i~iwd~~ 153 (203)
.+..++ |+|+|++|+++..+ . .|.+|++.
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 378899 99999998876643 2 89999986
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.62 E-value=1.1e-13 Score=105.00 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEcCC----CeEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGD----GTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~ 71 (203)
|+|+|+|++|++++.+ +.|.+|++.. +.. +.....+......+++ ++++|++++ .++.+.+|++...+.
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 4799999999888875 7999998865 443 3333334556777777 788777666 578999999964332
Q ss_pred ccee---ee--c-------cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce------e------eeeccCCCCc
Q 028806 72 CSDR---FV--G-------LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI------I------QPIAEHSEYP 125 (203)
Q Consensus 72 ~~~~---~~--~-------~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~ 125 (203)
.... +. + .+...+.++ |+|+|+++++++ .++.|.+|++..... + ..........
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 212 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG 212 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence 2111 11 0 001223667 899999776655 478999999875431 1 1222222335
Q ss_pred eEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 126 IESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
+..++|+|+|++|++++ .++.|.+|++.++
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 78999999999888777 6899999998755
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=3.9e-14 Score=108.33 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=111.7
Q ss_pred cccccCCEEEEEcC-CC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+|||||++|++++. ++ .|++|++.+++.......+...+..+.|+|+++.|+.++.++.|++||+.. +.....+..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~ 120 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQV 120 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccceeeeec
Confidence 69999999988876 66 488999999888776666655555678999999999999999999999975 344333443
Q ss_pred cCCCceeEE---EeeCCCEEEEE----------------------cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 79 LSPNSVDAL---LKLDEDRVITG----------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~---~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+...+... ++|++.+++.. ..+..|.+||+.+++...... +.. .+..+.|+|
T Consensus 121 -~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~~~sp 197 (388)
T 3pe7_A 121 -PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQ-WLGHPIYRP 197 (388)
T ss_dssp -CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEET
T ss_pred -hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCc-cccccEECC
Confidence 44433322 48899988742 234679999999887655443 323 688999999
Q ss_pred -CCCeEEEEeCC------CcEEEEeCCCcc
Q 028806 134 -DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 134 -~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
+|+.|+.+..+ ..|.++++.+..
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 99998877753 378888876654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=1.2e-14 Score=120.43 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=106.7
Q ss_pred cccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|||||++|++++.+ +.+.+||+.+++.. .+..+...+..++|+|||+.|+.+. ++.|++|++... ..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~-~~ 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL-PS 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-CC
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-ce
Confidence 579999999998765 56779999998764 4666778899999999999998874 689999998643 32
Q ss_pred ce-eeeccCCCc-----------------eeEE-EeeCCCEEEEEcCCC-------------------------------
Q 028806 73 SD-RFVGLSPNS-----------------VDAL-LKLDEDRVITGSENG------------------------------- 102 (203)
Q Consensus 73 ~~-~~~~~~~~~-----------------v~~~-~~~~~~~l~~~~~d~------------------------------- 102 (203)
.+ +..+ +... ...+ |+|||++|+.++.|.
T Consensus 145 ~~lt~~g-~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCC-CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 22 1112 2111 1246 899999999875321
Q ss_pred -----cEEEEEccC---Cc--eeeeecc------CCCCceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCcc
Q 028806 103 -----LISLVGILP---NR--IIQPIAE------HSEYPIESLALSHDRKFLGSISH----DSMLKLWDLDDIL 156 (203)
Q Consensus 103 -----~i~~~d~~~---~~--~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 156 (203)
.|++||+.+ ++ ....+.. + ...+..++|+|||+.++.... +..|++||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 478899888 73 2222322 4 336889999999997665432 3369999998876
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=8.2e-15 Score=119.72 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=110.3
Q ss_pred CcccccCCEEEEEcCC----------CeEEEEEcCC------CeEEEeec-CCccceEEEEEeeCCCEEEEecCC-----
Q 028806 1 MTFAADAMKLLGTSGD----------GTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----------~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (203)
++|||||+.|++++.+ ..|++|++.+ +... .+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 3699999999988776 5899999987 5543 444 555678889999999999877754
Q ss_pred ---CeEEEEEcCCcc---ccceeeeccCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCC-----
Q 028806 59 ---GTVLLYSWGYFK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEY----- 124 (203)
Q Consensus 59 ---~~i~~wd~~~~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~----- 124 (203)
..|++||+...+ ........ +...+..+ |+|+|++++++..++ .|.+|++.+++.......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999997323 23333333 45678888 999999777777777 5777777677655444433211
Q ss_pred --ceEEEEEeCCCCeEEEEeCCCcEEEE--eCCCc
Q 028806 125 --PIESLALSHDRKFLGSISHDSMLKLW--DLDDI 155 (203)
Q Consensus 125 --~i~~i~~~~~~~~l~~~~~d~~i~iw--d~~~~ 155 (203)
.+..++|+|++++++++.. +.++|| |+.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1567899999999999988 988888 55544
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=4.7e-13 Score=98.42 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=111.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+++|+|+++++...++.|.+|+.. ++.+..+. .+...+..++++|+++++++...++.|++|+.. +..+..+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 4678999988888888999999965 44444443 334568999999999988887788999999974 344445543
Q ss_pred cC--CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LS--PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~--~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. ...+..+ ++++|+++++...++ .|.+|+. .++.+..+..+.. ..+.+++++|+|+++++ +.++.|++|++.
T Consensus 203 -~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 203 -EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp -TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred -CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 2 2456777 899998888887775 9999995 4666666655432 14779999999986666 679999999986
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
...
T Consensus 280 ~~~ 282 (286)
T 1q7f_A 280 QLA 282 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.58 E-value=1.9e-13 Score=104.53 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEE--EeeCCCEEEEe----------------------c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV--LMKNGRKVVCG----------------------S 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~ 56 (203)
++|+|+|+.|++++.++.|++|++.+++.......+...+.... ++|++.+++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 36999999999999989999999999877665555555554444 47899888742 2
Q ss_pred CCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCCC-CceE
Q 028806 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSE-YPIE 127 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~~i~ 127 (203)
.+..|++||+.+ +. ...+.. +...+..+ |+| +|+.|+.+... ..|.++++..+.... +..+.. ..+.
T Consensus 166 ~~~~l~~~d~~~-g~-~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~ 241 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE-STVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCT 241 (388)
T ss_dssp CCEEEEEEETTT-CC-EEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEE
T ss_pred CcceEEEEECCC-Cc-eEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccc
Confidence 346799999874 33 344444 56667778 999 99998877653 368888876654443 333322 2577
Q ss_pred EEEEeCCCCeEEEEeC-CC----cEEEEeCCCccc
Q 028806 128 SLALSHDRKFLGSISH-DS----MLKLWDLDDILK 157 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 157 (203)
.+.|+|+|+.|+..+. ++ .|++||+.++..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 8899999998866543 22 399999988763
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.57 E-value=5.4e-14 Score=114.88 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=107.1
Q ss_pred cccCCE-EEEEcC-CCeEEEEEcC--C-CeEEEeecC-----CccceEEEEEeeCCCEEEEecCC----------CeEEE
Q 028806 4 AADAMK-LLGTSG-DGTLSVCNLR--K-NTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS----------GTVLL 63 (203)
Q Consensus 4 sp~~~~-l~~~~~-d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~ 63 (203)
||||+. |+.++. +..|+++++. + +. ...+.. +...+..++|+|||+.|++++.+ ..|++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 499998 776654 5677777776 3 43 344544 56778999999999999988876 58999
Q ss_pred EEcCCcc----ccceeee-ccCCCceeEE-EeeCCCEEEEEcCC--------CcEEEEEcc-CC---ceeeeeccCCCCc
Q 028806 64 YSWGYFK----DCSDRFV-GLSPNSVDAL-LKLDEDRVITGSEN--------GLISLVGIL-PN---RIIQPIAEHSEYP 125 (203)
Q Consensus 64 wd~~~~~----~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d--------~~i~~~d~~-~~---~~~~~~~~~~~~~ 125 (203)
|++.... .....+. . +...+..+ |+|+|++|++++.+ ..|++||+. ++ +.......+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~ 243 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEA 243 (662)
T ss_dssp EETTSTTTTCGGGSEESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBC
T ss_pred EECCCCccccCCceeEEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-Cce
Confidence 9987410 2334444 4 55566667 99999999987754 379999998 56 444434443 337
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028806 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
+..+.|+|||++++++..++ .|.+|++.++.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 89999999999777777777 67777765554
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1e-12 Score=98.80 Aligned_cols=154 Identities=11% Similarity=0.009 Sum_probs=114.2
Q ss_pred CcccccCCEEEEEcCC------------------------CeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEe
Q 028806 1 MTFAADAMKLLGTSGD------------------------GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 55 (203)
|+++|+|+++++...+ +.|.+||..+++.+..+. .+-..+..++++|+++++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 5789999998888776 479999998888766554 334578899999999988888
Q ss_pred cCCCeEEEEEcCCccccceeee---------ccCCCceeEE-Eee-CCCEEEEEc-CCCcEEEEEccCCceeeeeccCCC
Q 028806 56 SQSGTVLLYSWGYFKDCSDRFV---------GLSPNSVDAL-LKL-DEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE 123 (203)
Q Consensus 56 ~~d~~i~~wd~~~~~~~~~~~~---------~~~~~~v~~~-~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 123 (203)
..++.|++|+.......+..+. . +...+..+ ++| ++.++++.+ .++.|++|+ .++..+..+.....
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8899999999753211344442 2 23356777 899 788777776 689999999 56777666642211
Q ss_pred ---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcc
Q 028806 124 ---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 124 ---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....++++|+ ++++++...++.|++|+..++.
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 13789999998 6666777788999999998544
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.52 E-value=3.7e-13 Score=111.06 Aligned_cols=153 Identities=8% Similarity=-0.012 Sum_probs=105.8
Q ss_pred CcccccCCEEEEEcCCC-----eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe---------------
Q 028806 1 MTFAADAMKLLGTSGDG-----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------- 60 (203)
++|||||++||.+..++ .|++||+.+++.+..... ...+..++|+||++.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 36999999998775433 899999999987653222 223667999999999998877655
Q ss_pred -EEEEEcCCcccc-ceeeecc-CCCceeEE-EeeCCCEEEEEcC-----CCcEEEEEccC------Cc-eeeeeccCCCC
Q 028806 61 -VLLYSWGYFKDC-SDRFVGL-SPNSVDAL-LKLDEDRVITGSE-----NGLISLVGILP------NR-IIQPIAEHSEY 124 (203)
Q Consensus 61 -i~~wd~~~~~~~-~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~~~ 124 (203)
|++|++.+.... ...+... +...+..+ |+|+|++|+.++. +..|++||+.+ +. ....+..+..
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~- 287 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE- 287 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-
Confidence 999999753221 1122220 23335566 8999999988764 56799999986 43 3445555544
Q ss_pred ceEEEEEeCCCCeEEEEeCC----CcEEEEeCCCcc
Q 028806 125 PIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (203)
.+.. .|+|+|..|+..+.. ..|.+||+.++.
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 4444 588999888766643 369999998764
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.50 E-value=1.2e-13 Score=105.72 Aligned_cols=153 Identities=8% Similarity=-0.073 Sum_probs=103.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEE-------------------EEEeeCCCEEEEe-----cC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS-------------------VVLMKNGRKVVCG-----SQ 57 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~ 57 (203)
.|+|+|++|++++.++.|++|++.+++.......+...... +.|+|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 58999999999988899999999988765544433332222 2456666655543 34
Q ss_pred CCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCCceEEE
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESL 129 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~i 129 (203)
+..|++||+.. +.. ..+.. +...+..+ |+| ++..|+..+.+ ..|.+|++..++............+..+
T Consensus 167 ~~~l~~~d~~~-g~~-~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIET-GEL-EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTT-CCE-EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred cceEEEEECCC-CcE-Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 56899999864 333 33334 56667777 899 78877766543 3688888876554433332112257889
Q ss_pred EEeCCCCeEEEEeCC-----CcEEEEeCCCccc
Q 028806 130 ALSHDRKFLGSISHD-----SMLKLWDLDDILK 157 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 157 (203)
.|+|+|++|+.++.+ +.|++||+.++..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 999999988776543 4499999987653
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.49 E-value=1.4e-12 Score=98.14 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=109.0
Q ss_pred Ccccc-cCCEEEEEc-CCCeEEEEEcCCCeEEEeecC----------CccceEEEEEeeC-CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF----------SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp-~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+| +++++++.+ .++.|++|+ .++..+..+.. +-.....++++|+ +.++++...++.|++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 46888 788888876 689999999 55666655532 2234889999998 6777777788999999986
Q ss_pred Cccccceeeec-cCCCceeEE-Eee------CCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCCceEEEEEeCCCC
Q 028806 68 YFKDCSDRFVG-LSPNSVDAL-LKL------DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~~-~~~~~v~~~-~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~ 136 (203)
+ +..+..+.. .+...+..+ ++| ++...++......|++|++.+++.+..+. .+.. .+..++++|+|.
T Consensus 227 ~-G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~ 304 (329)
T 3fvz_A 227 T-KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGT 304 (329)
T ss_dssp T-CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSE
T ss_pred C-CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCC
Confidence 3 455555532 034456677 777 33322223345589999999999888873 3433 688999999997
Q ss_pred eEEEEeCCCcEEEEeCCC
Q 028806 137 FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~ 154 (203)
.+++...++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 777888899999999864
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=2.6e-12 Score=97.92 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=55.5
Q ss_pred EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 88 LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 88 ~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||+.++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 7899888887653 3479999999999999998773 789999999999998887 99999999988
No 175
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=5.5e-13 Score=102.06 Aligned_cols=139 Identities=10% Similarity=0.097 Sum_probs=104.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
|++++...++++|+.+ .+.+|++.... ..... .+.. |+.++| ++.+|+++ .++.|++||+...
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 4688899999999886 56679865322 11122 2445 999999 88999998 8899999999754
Q ss_pred cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
. ....... +...+..+ +.+. .+++++.+|.|.+||+.++.... +.. .|.+++|+|+| ++.+..||.|+
T Consensus 117 ~-~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~-~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 117 S-EFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQ-NVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp T-CEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEE-SEEEEEECSSE--EEEEETTSCEE
T ss_pred h-ccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccC-CceEEEEcCCc--eEEEEcCCcEE
Confidence 3 3344555 66677776 4332 38888999999999999877653 213 69999999999 67888999999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|+..+..
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99887766
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.47 E-value=7.2e-12 Score=93.96 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=106.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|++++++++..++.|.+|+..+++.......+...+.+++++|+++++++...+ +.|.+||... +.....+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~ 128 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII 128 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE
Confidence 3688999988888888999999998877655443456779999999999988877666 6899999864 2322122
Q ss_pred e--ccCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE-eCCCc
Q 028806 77 V--GLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM 146 (203)
Q Consensus 77 ~--~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~ 146 (203)
. . ....+..+ ++|+|+++++... .+.|..++..+++........ . .+..++|+|++++|+.+ ..++.
T Consensus 129 ~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 129 EDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-S-VANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp CSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-C-cccceEECCCCCEEEEEeCCCCe
Confidence 2 2 23457777 8999987776653 345666666555544332222 2 57889999999866554 45789
Q ss_pred EEEEeCCC
Q 028806 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|.+|++.+
T Consensus 206 i~~~d~~~ 213 (333)
T 2dg1_A 206 LHRIALED 213 (333)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99999853
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.1e-11 Score=102.20 Aligned_cols=155 Identities=11% Similarity=0.010 Sum_probs=109.9
Q ss_pred CcccccCCEEEEEcCCCe----------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecC---
Q 028806 1 MTFAADAMKLLGTSGDGT----------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQ--- 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~----------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 57 (203)
++|+|||+.|++++.++. |++|++.++. .+.....+...+..+.|+|++++|+.++.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999999887765 9999998764 33333334556789999999999887664
Q ss_pred --CCeEEEEEcCC------ccccceeeeccCCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCCce--eeeeccCCC
Q 028806 58 --SGTVLLYSWGY------FKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGILPNRI--IQPIAEHSE 123 (203)
Q Consensus 58 --d~~i~~wd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~--~~~~~~~~~ 123 (203)
+..|++||+.. .......+.. +...+...|+|+|..|+..+.. +.|.+|++.++.. ...+..+..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeC-CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999864 2224556666 6666665689999988876653 3699999887642 233434423
Q ss_pred -CceEEEEEeCCCCeEEEEeCCCc--EEEEeCCCcc
Q 028806 124 -YPIESLALSHDRKFLGSISHDSM--LKLWDLDDIL 156 (203)
Q Consensus 124 -~~i~~i~~~~~~~~l~~~~~d~~--i~iwd~~~~~ 156 (203)
..+..+.|++++.++++...++. |.+|++.++.
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 25778999987778888887874 6667775543
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=7.1e-13 Score=101.36 Aligned_cols=152 Identities=10% Similarity=-0.026 Sum_probs=102.5
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|||+|++|+.... +..|++|++.+++.......+......+.|+|+++.|+.++.++.|++|++.. +.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe
Confidence 469999999877644 24789999988876544333322233378999999999998888999999864 33333333
Q ss_pred ccCCCceeE-------------------E-EeeCCCEEEEE-----cCCCcEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 78 GLSPNSVDA-------------------L-LKLDEDRVITG-----SENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ~~~~~~v~~-------------------~-~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
. +...... + ++|+++.++.+ ..+..|.+||+.+++...... +.. .+..+.|+
T Consensus 120 ~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~-~~~~~~~s 196 (396)
T 3c5m_A 120 V-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTA-WLGHPIYR 196 (396)
T ss_dssp C-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEE
T ss_pred c-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCc-ccccceEC
Confidence 2 2221111 2 46667666554 345679999998887665553 323 68899999
Q ss_pred C-CCCeEEEEeCC------CcEEEEeCCCcc
Q 028806 133 H-DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 133 ~-~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
| ++..|+..+.+ ..|.+|++.+..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 9 78877766543 468899986654
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=5.6e-12 Score=92.66 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=112.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-C
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-N 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~ 82 (203)
..+++|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|+++++ .++.|+.||. + ++.+..+.. .. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-G~~~W~~~~-~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-GRELWNIAA-PAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-SCEEEEEEC-CTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-CCEEEEEcC-CCCc
Confidence 346889999999999999999999999988765 46889999999998883 4678999998 3 566666665 42 4
Q ss_pred ceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCC-----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 83 SVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+.++ +.|+|+++++.+. .+.|..++. +|+.+..+..... .....+.+.++|++|++...++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 56666 7899999999887 777877875 6777766542211 134566789999999999999999999987 5
Q ss_pred c
Q 028806 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
+
T Consensus 156 ~ 156 (276)
T 3no2_A 156 Q 156 (276)
T ss_dssp C
T ss_pred C
Confidence 4
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.43 E-value=3.8e-11 Score=88.14 Aligned_cols=148 Identities=9% Similarity=0.150 Sum_probs=107.6
Q ss_pred cc-cccCCEEEEEcC-CCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TF-AADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~-sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
++ .++++++++... ++.|++|+ .+++.+..+. .+...+..++++|+++++++...++.|.+|+.. +..+..+.
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 159 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC 159 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC
Confidence 45 356666666533 78999999 5566655554 334568999999999988887788999999964 34444443
Q ss_pred -ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCC-cEEEEeCC
Q 028806 78 -GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS-MLKLWDLD 153 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~ 153 (203)
. +...+..+ ++|+|+++++...++.|++|+. .++.+..+..+. ...+..++++|+|+++++...++ .|.+|+..
T Consensus 160 ~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 160 SK-HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp TT-TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CC-ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 2 33456778 8999998777778899999997 456665564431 12678999999998888877775 99999965
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 238 g 238 (286)
T 1q7f_A 238 G 238 (286)
T ss_dssp S
T ss_pred C
Confidence 4
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=1.2e-12 Score=107.87 Aligned_cols=150 Identities=9% Similarity=-0.035 Sum_probs=99.3
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCccc--eEEEEEeeCCCEEEEecCCCe-------------
Q 028806 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQSGT------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~------------- 60 (203)
++|||||++||.+ +.+..|++||+.+++.+. ..+... ...++|+||++.|+.++.+..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3699999999843 345789999999987531 111112 267899999999999887665
Q ss_pred EEEEEcCCccc---cceeeeccCCCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 61 VLLYSWGYFKD---CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 61 i~~wd~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
|++|++.+... .+..... +...+..+ |+|+|++|+.++.++ .|++++..++... .+..+.. .+....+
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~-~~~~~~~- 279 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVG-AKYEVHA- 279 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSS-CCEEEEE-
T ss_pred EEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCC-ceEEEEe-
Confidence 99999975332 1111222 33456677 999999998877665 6777776555443 3444434 4556666
Q ss_pred CCCCeEEEEe---CCCcEEEEeCCCcc
Q 028806 133 HDRKFLGSIS---HDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~---~d~~i~iwd~~~~~ 156 (203)
+++.+++... .++.|.+||+.++.
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 5556444433 25789999997764
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.42 E-value=5.2e-11 Score=95.77 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=111.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC-CccccceeeeccCCCc
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG-YFKDCSDRFVGLSPNS 83 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~ 83 (203)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|+++++++++.++.|.+||+. .....+..+.. .. .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CC-C
Confidence 44456677788899999999999888887643 356789999999999999999999999994 12345555554 33 3
Q ss_pred eeEE-Ee----eCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC----------C------------------------
Q 028806 84 VDAL-LK----LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS----------E------------------------ 123 (203)
Q Consensus 84 v~~~-~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~----------~------------------------ 123 (203)
...+ |+ |+|+++++++. .+.|.++|..+.+.+..+.... .
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 4566 88 69999998876 5889999988877665543110 0
Q ss_pred --------------------CceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCccc
Q 028806 124 --------------------YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 124 --------------------~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (203)
.....+.|+|++++++++. .++.|.++|+.++..
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 0123567999999887766 678899999988753
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.42 E-value=6e-12 Score=94.80 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred CcccccCCEEEEEcC---------------------------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE
Q 028806 1 MTFAADAMKLLGTSG---------------------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------------------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 53 (203)
++|+|+|+.|+.++. ...|++|++.+++.+..+.. . .+..++|+|++ +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 369999999888763 25799999998876444444 3 78899999999 777
Q ss_pred EecCCC-------eEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeeee
Q 028806 54 CGSQSG-------TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQPI 118 (203)
Q Consensus 54 ~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~ 118 (203)
++..+. ...+|.+. .+ ....+.. + ..+..+ +|+|++|+.++.+ ..|.+|| +++.....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~-~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DG-KEEKMFE-K-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TT-EEEEEEE-E-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EEecccccccccccccEEEeC-CC-ceEEecc-C-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 775542 44555554 23 3344554 4 344444 9999998877643 3688888 56655544
Q ss_pred ccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 119 AEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 119 ~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..+ ...+.. +.|+ ++ ++++++.++.+++| +.+
T Consensus 259 ~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 259 DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 554 336776 8999 88 88888899999999 863
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=1.2e-11 Score=90.97 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=114.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+++|+|++|++ .++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..++. .+..+..+...
T Consensus 43 ~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~ 117 (276)
T 3no2_A 43 AATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFE 117 (276)
T ss_dssp EECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEEC
T ss_pred EECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEecc
Confidence 57899998883 4678999998 78888888764 357888999999999998876 777777765 34555444320
Q ss_pred -----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 -----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 -----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+......+ ..++|+++++...++.|..||.. |+.+..+... . .+.++...++++.+++++.++.|..+|..
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-G-TPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-C-CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 11123334 68899999999999999999987 9999888765 3 46678889999999998888889999988
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+++.
T Consensus 195 tG~~ 198 (276)
T 3no2_A 195 SNRI 198 (276)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 7665
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.41 E-value=2.1e-11 Score=90.12 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=104.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
++|+|+++ +++++..++.|.+|+..++ ...+..+...+.+++++|+++++++...++.|.+||..+ +........
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~ 109 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSF 109 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeecc
Confidence 46899998 7788888899999999887 455555667799999999999888877778999999853 232222111
Q ss_pred --cCCCceeEE-EeeCCCEEEE----Ec-------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 79 --LSPNSVDAL-LKLDEDRVIT----GS-------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.....+..+ ++|+|+++++ ++ ..+.|..++.. ++.. .+..+.. ....++|+|+++.|
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS-SEEEEEECTTSCEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC-CCccEEECCCCCEE
Confidence 011234567 8999998887 33 13456666654 4433 3333323 57899999999988
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++.+.++.|.+|++.
T Consensus 187 v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 187 VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEeCCCCeEEEEEEC
Confidence 766678899999986
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.41 E-value=1.5e-11 Score=89.36 Aligned_cols=154 Identities=6% Similarity=-0.067 Sum_probs=108.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+++|+|+++++...++.|.+|+..+.............+.+++++++++++++...++.|.+|+.... ........ .
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 190 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFT-D 190 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCS-S
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeeccc-C
Confidence 467888987777777889999976654433322233345788999999997777777889999998632 22222222 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+..+ ++++|.++++...++.|.+|+............+. ..+.+++++|+|+.+++...++.|+++++...+.
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3556777 78999777777778899999986544333222221 2588999999999888888899999999865543
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.39 E-value=1.4e-11 Score=92.71 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=93.2
Q ss_pred CcccccCCEEEEEcCC---C--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----------------
Q 028806 1 MTFAADAMKLLGTSGD---G--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------- 58 (203)
++|||+|++|++++.+ + .|++|++.+++.......+ . +..++|+|+++.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 3699999999887643 2 4888888888765544333 3 8999999999988887632
Q ss_pred ----------CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCC-------cEEEEEccCCceeeeecc
Q 028806 59 ----------GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG-------LISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ----------~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~ 120 (203)
..|++||+.. +..+..+.. . .+..+ |+|+| +++++..+. ...||.+.+++.. .+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE 215 (347)
T ss_dssp --------CEEEEEEEETTT-TEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE
T ss_pred cCcccccCccceEEEEECCC-CeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eecc
Confidence 5688899864 333244544 2 56677 89999 777765432 3445544455443 3333
Q ss_pred CCCCceEEEEEeCCCCeEEEEeCC--------CcEEEEe
Q 028806 121 HSEYPIESLALSHDRKFLGSISHD--------SMLKLWD 151 (203)
Q Consensus 121 ~~~~~i~~i~~~~~~~~l~~~~~d--------~~i~iwd 151 (203)
+ . .+..+ +|+|++|+.++.+ ..|.+||
T Consensus 216 ~-~-~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 216 K-V-SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp E-E-SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred C-c-ceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 3 2 45544 9999998877744 3688888
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.38 E-value=6.1e-11 Score=89.15 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----cceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----EELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~ 73 (203)
|+++|+++.+++...++.|.+||..+++....+.... .....+++ . +..|++++ .++.|.++|+.+ +...
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t-~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET-DKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT-TEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC-CeEE
Confidence 4677888555555478999999999998876665332 14556777 4 44555444 488999999975 4455
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCC----------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSEN----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+.. .. ....+ ++|+|++++++..+ +.|.++|..+++....+..........++|+|++++|+++.
T Consensus 166 ~~i~~-g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 DELTI-GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEC-SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEc-CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 55553 33 33455 79999877766554 78999999988877666543222578999999999988776
Q ss_pred CCCcEEEEeCCCccc
Q 028806 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
. .|.+||+.++..
T Consensus 244 ~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 244 N--DIWRMPVEADRV 256 (328)
T ss_dssp S--SEEEEETTCSSC
T ss_pred c--EEEEEECCCCce
Confidence 4 899999987664
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.37 E-value=9.2e-11 Score=85.21 Aligned_cols=152 Identities=7% Similarity=-0.034 Sum_probs=105.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+++|+++++++.. ++.|.+|+..+.............+..+++.++++++++...++.|.+|+.... ........ .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 148 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFT-G 148 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCC-S
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccc-c
Confidence 46788888666666 889999998765443222223356889999999998887777889999976432 11111112 2
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+..+ ++++|+++++...++.|.+|+............+.. .+..++++++|..+++...++.|.+|+..+..
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 3356677 789998777777788999999876655433333322 68899999999776666678899999986643
No 190
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.37 E-value=4.1e-11 Score=91.32 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=105.2
Q ss_pred ccCCEEEEEc------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC----------CCeEEEEEcCC
Q 028806 5 ADAMKLLGTS------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGY 68 (203)
Q Consensus 5 p~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~wd~~~ 68 (203)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3667666653 3679999999999888888766554 8999999999998862 56799999874
Q ss_pred ccccceeeeccC------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCCceEEEEEeCCC-Ce
Q 028806 69 FKDCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-KF 137 (203)
Q Consensus 69 ~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~-~~ 137 (203)
.+.+..+.. . ......+ ++|+|+++++++. ++.|.+||+.+++.+.. +... . ...+.+.|++ ..
T Consensus 91 -~~~~~~i~~-~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~--~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 91 -LTFEKEISL-PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G--CWSVIPQPNRPRS 165 (361)
T ss_dssp -CCEEEEEEE-CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T--EEEEEECTTSSSE
T ss_pred -CcEEEEEEc-CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C--cceeEEcCCCCee
Confidence 345555442 2 1234556 8999999999874 57899999999988877 6543 2 3445667765 56
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028806 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+|++..
T Consensus 166 ~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGE 182 (361)
T ss_dssp EEEEETTSSEEEEEECT
T ss_pred EEEECCCCcEEEEEECC
Confidence 67777888888887754
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.34 E-value=4e-11 Score=89.88 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=108.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++..++..+.++.++.| .+.....+..+...+.+++|+|++++++++..++.|.+||... +........ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 85 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-H 85 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-S
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-C
Confidence 5688888887777778889999 3455556666667789999999999888888899999999864 333332324 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc-CCCCceEEEEEeCCCCeEEEEeC------CCcEE
Q 028806 81 PNSVDAL-LKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE-HSEYPIESLALSHDRKFLGSISH------DSMLK 148 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~------d~~i~ 148 (203)
...+.++ ++|+++++++...+ +.|.+||..++.....+.. .....+..++++|+++++++... .+.|.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 5678888 89999888777666 6899999887765433321 11236899999999987776553 35677
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
.++..+.
T Consensus 166 ~~~~~~~ 172 (333)
T 2dg1_A 166 YVSPDFR 172 (333)
T ss_dssp EECTTSC
T ss_pred EEeCCCC
Confidence 7776543
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.34 E-value=2e-11 Score=101.29 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred cccccCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe--------------EE
Q 028806 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------VL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~ 62 (203)
+|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.+..+.. |+
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 699999999887543 46999999998765431 12222357899999 88888776543 88
Q ss_pred EEEcCCcccc-ceeeecc-CCCceeEE-EeeCCCEEEEEcCCC-----cEEEEEccCC--ceeeeeccCCCCceEEEEEe
Q 028806 63 LYSWGYFKDC-SDRFVGL-SPNSVDAL-LKLDEDRVITGSENG-----LISLVGILPN--RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 63 ~wd~~~~~~~-~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~ 132 (203)
+|++.+.... ...+... +...+..+ |+|+|++|+..+.++ .|++||+.++ +....+..+.. .+... ++
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~~ 324 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-VD 324 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-EE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-Ee
Confidence 9998643221 1122220 12236667 899999998877543 7999999877 41344444433 34444 35
Q ss_pred CCCCeEEEEeC----CCcEEEEeCCCc
Q 028806 133 HDRKFLGSISH----DSMLKLWDLDDI 155 (203)
Q Consensus 133 ~~~~~l~~~~~----d~~i~iwd~~~~ 155 (203)
|++..|+..+. .+.|.+|++.++
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 88988887775 345999998774
No 193
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=2.9e-11 Score=92.54 Aligned_cols=128 Identities=10% Similarity=0.071 Sum_probs=96.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+| ++++|+++ .++.|++|++.+.........+...+.++.+.+. .+++++.||.|.+||+... ... . .
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-~~~-~----~ 161 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STK-Q----L 161 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEE-E----E
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-ccc-c----c
Confidence 356 88899998 7799999999865444445556667888777654 3888899999999999742 322 1 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeee------c---cCCCCceEEEEEeCCCCeEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPI------A---EHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~------~---~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...|+++ |+|+| ++.|..||.+++|+...+.. ..++ . .| ...|.++.|.+++.++++-.
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 4578899 99999 67899999999999887765 4455 2 24 34899999999999887643
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=2.5e-10 Score=84.31 Aligned_cols=149 Identities=8% Similarity=0.014 Sum_probs=103.3
Q ss_pred CcccccCCEEEE----Ec-------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 1 MTFAADAMKLLG----TS-------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~----~~-------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
++++|+|+++++ ++ ..+.|..++.. +.. ..+..+......++|+|+++.+++.+.++.|++
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 467899998887 32 13456666655 443 333445566789999999998877777899999
Q ss_pred EEcCCcccc---ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE-eCCCCeE
Q 028806 64 YSWGYFKDC---SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL-SHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~l 138 (203)
|++...+.. ...+.. ....+..+ ++++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| .|+++.|
T Consensus 198 ~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred EEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 998632332 223322 34455677 89999876665 7789999986 777777776633 788999 5898988
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.+ .+..++..+...+
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEETT-EEEEEECSCCBCC
T ss_pred EEEcCC-eEEEEEccccccc
Confidence 888865 4666666665544
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=4e-10 Score=86.28 Aligned_cols=156 Identities=12% Similarity=0.016 Sum_probs=108.4
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------ccceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
+++||||++|+++. .++.|.+||..+.+.+..+... ......++|+|+|++|++++. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57999999998875 3678999999988777665432 123457899999999998874 4789
Q ss_pred EEEEcCCcccccee-eec-------------------------------------------------cCC----------
Q 028806 62 LLYSWGYFKDCSDR-FVG-------------------------------------------------LSP---------- 81 (203)
Q Consensus 62 ~~wd~~~~~~~~~~-~~~-------------------------------------------------~~~---------- 81 (203)
.++| .+. ..+.. +.. .+.
T Consensus 151 ~viD-~t~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 151 GLVV-QGG-SSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred EEEE-CCC-CEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 9998 642 22222 100 000
Q ss_pred --------------------------------------CceeEE-EeeCCCEEEEEcC----------CCcEEEEEccCC
Q 028806 82 --------------------------------------NSVDAL-LKLDEDRVITGSE----------NGLISLVGILPN 112 (203)
Q Consensus 82 --------------------------------------~~v~~~-~~~~~~~l~~~~~----------d~~i~~~d~~~~ 112 (203)
.....+ ++|+++.++++.. .+.|.++|+.++
T Consensus 229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 000013 4556666666543 346999999999
Q ss_pred ceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 113 RIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
+.+..+... . ...+++|+|||+ .++++. .++.|.++|+.+++....
T Consensus 309 ~vv~~i~~g-~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 309 QTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEEEECC-C-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 988888654 2 478999999999 677776 589999999998876543
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.32 E-value=1.7e-10 Score=95.06 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=101.9
Q ss_pred CcccccCCEEEEEcCCCe-------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecCCC----
Q 028806 1 MTFAADAMKLLGTSGDGT-------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---- 59 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~-------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 59 (203)
++|+|||+.|++++.+.. |++|++.++. ++.....+...+..+.|+|+|++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 579999999999888766 9999998764 4444444556788999999999888776555
Q ss_pred eEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce---eeeeccCCCCceEEEEEe
Q 028806 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI---IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 60 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~ 132 (203)
.|++|+.. ......+.. +...+...+.++|. ++..+. ++.|.+|++.++.. ...+..+....+..++|+
T Consensus 253 ~l~~~~~~--~~~~~~l~~-~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 253 DVYWKRPG--EKDFRLLVK-GVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEECTT--CSSCEEEEE-CSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred EEEEEcCC--CCceEEeec-CCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 56666543 234455555 55555555347777 554443 57899999987653 333333323357888888
Q ss_pred CCCCeEEEEeCCCcEEEEeCC
Q 028806 133 HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++++...|+..++|.+.
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEe
Confidence 66778888888887777554
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.24 E-value=3.2e-09 Score=77.93 Aligned_cols=150 Identities=8% Similarity=-0.033 Sum_probs=104.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
|+++++|.++++...++.|..|+.........+......+..+++.+++.++++...++.|.+||.. +.... ....
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~- 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREYELPN- 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSS-
T ss_pred EEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEecCCC-
Confidence 3567888888887778899999976332222222344578899999999888887778899999873 22221 1222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
....+..+ +.+++.++++....+.|..|+. +++.... +... ...+..++++++++++++...++.|.+|+. ++.
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 33456777 7889988777777788999998 6665432 2222 225789999999987666666788999998 443
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=3.9e-09 Score=84.91 Aligned_cols=152 Identities=11% Similarity=0.065 Sum_probs=105.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEe----eCCCEEEEecC-CCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLM----KNGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~~wd~~~~~~~~ 73 (203)
++|||+|+++++++.++.|.+||+. +++.+..+... .....++|+ |+|+++++++. .+++.++|..+. +.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~ 279 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPK 279 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEE
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEE
Confidence 4689999999999999999999995 77777777653 346799999 69999888775 589999997542 222
Q ss_pred eeeecc---------------------C---------------------------------CCceeEE-EeeCCCEEEEE
Q 028806 74 DRFVGL---------------------S---------------------------------PNSVDAL-LKLDEDRVITG 98 (203)
Q Consensus 74 ~~~~~~---------------------~---------------------------------~~~v~~~-~~~~~~~l~~~ 98 (203)
..+... + ......+ |+|++++++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 222100 0 0012245 78999998776
Q ss_pred c-CCCcEEEEEccCCceeeeecc-CCC-CceEEEE-EeCCCCeEE-EEe-CCCcEEEEeCCC
Q 028806 99 S-ENGLISLVGILPNRIIQPIAE-HSE-YPIESLA-LSHDRKFLG-SIS-HDSMLKLWDLDD 154 (203)
Q Consensus 99 ~-~d~~i~~~d~~~~~~~~~~~~-~~~-~~i~~i~-~~~~~~~l~-~~~-~d~~i~iwd~~~ 154 (203)
+ .++.|.++|+.+++.+..+.. ... .+-..+. ++|++..++ +.. .++.|.++|..+
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 6 478899999999988776654 211 0111222 588755444 443 468999999887
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=7.2e-10 Score=82.17 Aligned_cols=150 Identities=8% Similarity=0.072 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcCC---------------CeEEEEEcCCCeEEEeecCCccceEEEEEe----eCCCEEEEe-cCCCe
Q 028806 1 MTFAADAMKLLGTSGD---------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRKVVCG-SQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~ 60 (203)
|+++|+|+++++...+ +.|..|+.. ++..... .+......++|+ |+++.++.+ ..++.
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 3577888877776554 567777765 5443322 233456789999 998765544 56789
Q ss_pred EEEEEcCCccc-----cceeeeccCC-CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 61 VLLYSWGYFKD-----CSDRFVGLSP-NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 61 i~~wd~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
|.+|++...+. ....+.. +. ..+..+ ++++|+++++...++.|.+||..+++.+..+..+.. .+.+++++|
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~ 277 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKP 277 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECT
T ss_pred EEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECC
Confidence 99999752122 1122222 22 446667 799998888877788999999887776666655533 689999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC
Q 028806 134 DRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
++++|++++ .++.|..|++..
T Consensus 278 dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEeCCCCeEEEEeCCC
Confidence 999665554 567899999864
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.22 E-value=1.7e-09 Score=89.80 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=100.8
Q ss_pred CcccccCCEEEEEcCCCe--------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecCC----
Q 028806 1 MTFAADAMKLLGTSGDGT--------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS---- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~--------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 58 (203)
++|+|| +.|++++.++. |++|++.++. .+.....+...+..+.|+|+|++|+..+.+
T Consensus 214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 479999 99888876543 8899987654 333333333458899999999988876644
Q ss_pred -CeEEEEEcCCcccc-ceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCC--ceeeeeccCCCCceEEEE
Q 028806 59 -GTVLLYSWGYFKDC-SDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPN--RIIQPIAEHSEYPIESLA 130 (203)
Q Consensus 59 -~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~ 130 (203)
..|++||+...... ...+.. +.......++|+|..|+..+. .+.|.+|++.++ .....+..+ ...+..+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~ 370 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP-DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVG 370 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEE
Confidence 38999998643113 455655 555555555699999888775 345999998874 334444444 33566777
Q ss_pred EeCCCCeEEEEeCCCcEEEEeC
Q 028806 131 LSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
|+ ++.++++...++..+||.+
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEE
Confidence 77 5567777778887766654
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.22 E-value=4.9e-09 Score=76.90 Aligned_cols=147 Identities=5% Similarity=-0.060 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-eec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~ 78 (203)
|++.|+++++++...++.|.+|+. ++.... ........+..+++.++++.+++....+.|.+||. . +..... +..
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 180 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPT 180 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCC
Confidence 356788888888777889999998 554432 23334456899999999988887777789999997 3 333221 222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +++++.++++....+.|.+|+. ++..... +..+ ...+.+++++++|+.+++...++.|.+||..
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 33456677 7889887777667888999998 6654332 2222 2368899999999866665577899999973
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.21 E-value=1.6e-09 Score=81.35 Aligned_cols=145 Identities=7% Similarity=0.003 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-----
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP----- 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----- 81 (203)
++++++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+ ......+.. ..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~-g~~~~~~ 130 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIEC-PDMDMES 130 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEEC-TTCCTTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEc-CCccccC
Confidence 44555666679999999999988887753 45688999999985444444789999999874 344444443 22
Q ss_pred CceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC----------CcEE
Q 028806 82 NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----------SMLK 148 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------~~i~ 148 (203)
.....+ + ++..+++++ .++.|.++|+.+++.+..+.... ....+.++|+|++++++..+ +.|.
T Consensus 131 ~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 131 GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence 134455 4 455555554 47899999999998887776542 35688999999877766554 7899
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
++|..++...
T Consensus 207 ~id~~t~~v~ 216 (328)
T 3dsm_A 207 RIDAETFTVE 216 (328)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999876543
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=1.8e-09 Score=83.63 Aligned_cols=150 Identities=14% Similarity=0.030 Sum_probs=101.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceee--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF-- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~-- 76 (203)
|+|+|+++++++...++.|++|+..++.......... ... ++|+|+++.|+++..++ .|.+|+.... .....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC-ceeEEeee
Confidence 5788999987887778999999999887655544432 233 99999999988888765 7888887532 222233
Q ss_pred --eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----eccCCCCc-eEEEEEeCC-CCeEEEEeCCCcE
Q 028806 77 --VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP----IAEHSEYP-IESLALSHD-RKFLGSISHDSML 147 (203)
Q Consensus 77 --~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~-i~~i~~~~~-~~~l~~~~~d~~i 147 (203)
.. ....+.++ ++|++..|+++..++.|+.||+.++..... ........ ...++|+|+ +.++++-...+.|
T Consensus 213 ~~~~-~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGST-FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTT-SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccch-hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 21 22345666 889656666677788999999887654322 22221211 128999995 5555555577889
Q ss_pred EEEeCCC
Q 028806 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
+.|+...
T Consensus 292 ~~~~~~g 298 (409)
T 3hrp_A 292 YKITPDG 298 (409)
T ss_dssp EEECTTC
T ss_pred EEEecCC
Confidence 9998764
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.19 E-value=1.6e-09 Score=82.75 Aligned_cols=144 Identities=10% Similarity=-0.067 Sum_probs=103.8
Q ss_pred ccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcC
Q 028806 3 FAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~ 67 (203)
..|+++.+++... ++.|.++|..+++.+..+.....+ . ++++|+++++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4688988877754 679999999999998888755555 4 99999999888775 35789999997
Q ss_pred CccccceeeeccCC-------CceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 68 YFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+ ...+..+.. .. .....+ ++|+|+++++++. ++.|.++|+.+++.+.++... . + ...+....+.
T Consensus 118 t-~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 118 T-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D--C-YHIFPTAPDT 191 (386)
T ss_dssp T-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S--E-EEEEEEETTE
T ss_pred C-CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C--c-ceeecCCCce
Confidence 5 455555532 21 134456 8999999998874 688999999999999888653 2 1 1223223345
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028806 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 55666677777777654
No 205
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=5.3e-12 Score=96.56 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=81.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC-ce
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v 84 (203)
++..|++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.|+.|+.||..+ ++.+..+.. +.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~-~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF-TIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-CHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec-cCcccc
Confidence 567899999999999999999999888765 4455555566777888888999999999865 344333322 211 11
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+. +...+..+++++.++.|+.||..+|+.+..+..+. ...++|++..|++++.++.|+.||.+++...
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 111 11134567788889999999999999987776552 1345678888999999999999999988654
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=1e-09 Score=90.38 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=96.9
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-------------eEEE
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-------------TVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~~ 63 (203)
+|||||++||.+. ....|++||+.+++.+... .+......++|+ |++.|+.+..+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 6999999988642 2357999999998765431 111123568999 999988887663 4999
Q ss_pred EEcCCccccceeeeccCCC----ceeEE-EeeCCCEEEEEcC----CCcEEEEEccCCc-eeeeeccCCCCceEEEEEeC
Q 028806 64 YSWGYFKDCSDRFVGLSPN----SVDAL-LKLDEDRVITGSE----NGLISLVGILPNR-IIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~ 133 (203)
|++.+....-..+.. ... ....+ ++|+|++|+.... ...|+++|+.++. ....+..+.. ..... |++
T Consensus 213 ~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~-~~~ 289 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFG-AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSL-VDN 289 (693)
T ss_dssp EETTSCGGGCEEEES-CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEE-EEE
T ss_pred EECCCCcccceEEEe-cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEE-Eec
Confidence 998754322222222 222 24556 8999998875443 3579999987763 3444544433 34444 667
Q ss_pred CCCeEEEEe-C---CCcEEEEeCCCccc
Q 028806 134 DRKFLGSIS-H---DSMLKLWDLDDILK 157 (203)
Q Consensus 134 ~~~~l~~~~-~---d~~i~iwd~~~~~~ 157 (203)
++..|+..+ . .+.|.++++.++..
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 666655444 3 35799999987643
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=2.7e-08 Score=72.96 Aligned_cols=147 Identities=8% Similarity=0.027 Sum_probs=103.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|+++++|+++++...++.|.+|+.. ++... .+......+..+++.+++.++++...++.|..||.. +.. ..+..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~ 100 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP 100 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC
Confidence 3567888888877778999999988 54433 223334678999999999888877778889999875 232 22221
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.....+..+ +.+++.++++...++.|..++.. ++... .+... ...+..+++.++++.+++...++.|..|+..
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-GSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC-CCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 023456777 78899888877778889999987 55442 22222 2368899999999866665567889999873
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=4.5e-09 Score=78.04 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=99.9
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
+|+|+++ ++++...++.|..|+. ++.. ..+..+...+..++++++++++++...++.|.+|+.. +.. ..+..
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~-~~~~~~~ 125 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA-HLLVGRY 125 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-EEEEecc
Confidence 6899998 5677777899999998 4443 3344455678999999999977776667889999874 232 22211
Q ss_pred --cCCCceeEE-EeeCCCEEEE----EcC-------------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 79 --LSPNSVDAL-LKLDEDRVIT----GSE-------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.....+..+ +.|+|.++++ +.. .+.|..|+..+++..... .. . ....++|+|+++.|
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-~-~p~gl~~spdg~~l 202 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-D-HPNGLAFSPDEQTL 202 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-S-SEEEEEECTTSSEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-C-CCcceEEcCCCCEE
Confidence 011235567 8999998876 332 245777887666654433 22 3 46789999999988
Q ss_pred EEEeCC------CcEEEEeCCC
Q 028806 139 GSISHD------SMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d------~~i~iwd~~~ 154 (203)
+.+... +.|.+|++..
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEEECCC---CCCEEEEEEEET
T ss_pred EEEecCCcCCCCCEEEEEEecC
Confidence 877654 6899999864
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.10 E-value=2e-08 Score=76.83 Aligned_cols=143 Identities=8% Similarity=-0.131 Sum_probs=101.7
Q ss_pred cccCCEEEEEcC--CC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCC
Q 028806 4 AADAMKLLGTSG--DG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (203)
Q Consensus 4 sp~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~ 68 (203)
.|+++++++... .. +|.+||..+++.+..+.....+ .++++|++++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777766653 23 8899999999988887754443 899999999999886 367899999864
Q ss_pred ccccceeeeccC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCCceEEEEEeCCC-C
Q 028806 69 FKDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-K 136 (203)
Q Consensus 69 ~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~-~ 136 (203)
...+..+.. . ......+ ++|+|++|++++. ++.|.++| .+++.+.. +... . ++.+.|++ +
T Consensus 107 -~~~~~~i~~-~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~----~~~~~~~~~~ 178 (373)
T 2mad_H 107 -FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T----CYHIHPGAPS 178 (373)
T ss_pred -CcEEEEEEC-CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c----eEEEEeCCCc
Confidence 344444332 1 1223456 8999999999874 47899999 99988877 6543 2 24455655 4
Q ss_pred eEEEEeCCCcEEEEeCCCccc
Q 028806 137 FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.+++.+.||.+.+++. ++..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcE
Confidence 4556667888999988 5543
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.10 E-value=3.4e-08 Score=72.38 Aligned_cols=146 Identities=6% Similarity=-0.040 Sum_probs=101.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
+++++++++++...++.|.+|+.. ++.. ..+......+..+++.++++++++...++.|..|+.. +.... .+..
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~- 143 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYDLPN- 143 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEECSS-
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEccCCC-
Confidence 567888877777777889999987 5443 2223234668999999999988887778889999875 23221 1222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +.++++++++....+.|..++. +++.... .... ...+..++++++++.+++....+.|.+|+..
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 23456777 7899997666666788999998 5554432 2222 2258899999999776666567789999973
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=3.8e-09 Score=78.15 Aligned_cols=139 Identities=8% Similarity=0.014 Sum_probs=90.8
Q ss_pred CcccccCCEEEEEcCC---------CeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcC-C
Q 028806 1 MTFAADAMKLLGTSGD---------GTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWG-Y 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~-~ 68 (203)
++++|+|+++++.... ....||.+.. +.... +.........++|+|+++.|+. .+.++.|.+|++. .
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 3578889876654221 2234444432 33322 2223345688999999987654 4557899999974 2
Q ss_pred cccc-----ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEE
Q 028806 69 FKDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 69 ~~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 141 (203)
.+.. ...+.. ....+..+ +.++|++.++....+.|.+||..+++.+..+..+.. .+++++|. |+++.|+.+
T Consensus 182 ~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 182 TGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEE
T ss_pred CCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEE
Confidence 2221 111222 23456677 789998777777778899999988998888877644 68999998 888876655
Q ss_pred e
Q 028806 142 S 142 (203)
Q Consensus 142 ~ 142 (203)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=1.1e-08 Score=84.36 Aligned_cols=151 Identities=7% Similarity=0.035 Sum_probs=102.7
Q ss_pred CcccccCCEEEEEcCCC-------------eEEEEEcCCCe----EEEeecC-CccceEEEEEeeCCCEEEEecC----C
Q 028806 1 MTFAADAMKLLGTSGDG-------------TLSVCNLRKNT----VQTRSEF-SEEELTSVVLMKNGRKVVCGSQ----S 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-------------~i~vw~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d 58 (203)
++|+ |++.|+.++.+. .|++|++.++. ++..... +...+.++.|+|++++|+.... .
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 4799 999998887764 39999987653 3333333 4455788999999998865432 3
Q ss_pred CeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce--eeeeccCCCCceEEEEEe
Q 028806 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI--IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 59 ~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~ 132 (203)
+.|+++|+.........+.. +.......+++++..|+..+. .+.|.++++.++.. ...+..+.. .+. .|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEE
T ss_pred cEEEEEECCCCCCceEEEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEE
Confidence 58999998754335566666 555555557777776665543 35788999887654 234444544 343 899
Q ss_pred CCCCeEEEEeC-CC--cEEEEeCCCcc
Q 028806 133 HDRKFLGSISH-DS--MLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~~-d~--~i~iwd~~~~~ 156 (203)
+++++|+.... ++ .|++|++.+..
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 99998877664 43 68999987543
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=3.7e-08 Score=72.81 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=98.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CccceEEEEEeeCCCEEEEecCC---------CeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQS---------GTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~ 67 (203)
++++|+|+++++. ++.|.+|+..+++....... ....+..++++|+|+++++.... ..-.+|.+.
T Consensus 59 i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 59 VALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp EEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred EEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 4678999965554 46899999988765432221 22457899999999977654321 233455554
Q ss_pred CccccceeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEc--cCCce-----eeeeccCCCCceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGI--LPNRI-----IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~--~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
..+.. ..+.. .......+ |+|+++.++.+ +..+.|.+|++ .++.. ...+..+.. ....++++++|++.
T Consensus 137 ~~g~~-~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 137 PDHHV-KKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLW 213 (297)
T ss_dssp TTSCE-EEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEE
T ss_pred CCCCE-EEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEE
Confidence 32332 22332 33445667 89999877654 55788999987 45543 222222222 57889999999877
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028806 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++....+.|.+||..++..
T Consensus 214 va~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEETTTEEEEECTTTCCE
T ss_pred EEEcCCCEEEEEcCCCceE
Confidence 7777778899999986653
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.07 E-value=1.3e-08 Score=78.75 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=99.7
Q ss_pred CcccccCCEEEEEcCCC--eEEEEEcCCCeEEEee----cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|+|+++.|+++..++ .|.+++...+.....+ ......+.+++++|++..|+++..++.|+.||.... . ..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~-~-~~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ-E-VT 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-C-EE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-C-EE
Confidence 57899999888887765 7999988765433333 224456788999995555555777889999998643 2 22
Q ss_pred ee-----eccCCCce-e-EE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC--------------CCceEEEEE
Q 028806 75 RF-----VGLSPNSV-D-AL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS--------------EYPIESLAL 131 (203)
Q Consensus 75 ~~-----~~~~~~~v-~-~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------------~~~i~~i~~ 131 (203)
.+ .+ ..... . .+ |+|+ +.++++-...+.|+.|+.... +..+.++. -.....+++
T Consensus 254 ~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 254 LIKQLELSG-SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp EEEECCCCS-CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred EEecccccC-CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 22 11 11111 2 67 8995 555555556788999987533 22232221 114788999
Q ss_pred eCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 132 SHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
+|+|+++++-. .++.|+.|++.++.
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 99999777777 78899999976554
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.04 E-value=2e-09 Score=82.04 Aligned_cols=159 Identities=9% Similarity=-0.075 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------ccceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
++++|++++++++. .++.|.+||+.+++.+.++..+ ......++++|||++++++.. ...+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 46899999888775 3688999999999988887533 123567899999999888764 3567
Q ss_pred EE--EEcCC------c----------------------------------cccc--------------------------
Q 028806 62 LL--YSWGY------F----------------------------------KDCS-------------------------- 73 (203)
Q Consensus 62 ~~--wd~~~------~----------------------------------~~~~-------------------------- 73 (203)
.+ +|+.+ . +...
T Consensus 150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs 229 (368)
T 1mda_H 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence 77 76631 0 0000
Q ss_pred ----eeeecc-CC---------------------CceeEE-EeeCCCEEEEEcC-C--------CcEEEEEccCCceeee
Q 028806 74 ----DRFVGL-SP---------------------NSVDAL-LKLDEDRVITGSE-N--------GLISLVGILPNRIIQP 117 (203)
Q Consensus 74 ----~~~~~~-~~---------------------~~v~~~-~~~~~~~l~~~~~-d--------~~i~~~d~~~~~~~~~ 117 (203)
..+... .. .....+ ++|+++.++.+.. . ..+.++|+.+++.+..
T Consensus 230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 000000 00 000114 7888888887643 2 3566999999999988
Q ss_pred eccCCCCceEEEEEeCCCCe-EEEEe-CCCcEEEEeCCCcccCCCC
Q 028806 118 IAEHSEYPIESLALSHDRKF-LGSIS-HDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~-l~~~~-~d~~i~iwd~~~~~~~~~~ 161 (203)
+... . ....|+|+|++++ +++.. .++.|.++|+.+++.....
T Consensus 310 i~vg-~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 310 ISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EECC-C-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 8766 3 5789999999985 55555 5899999999998765443
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.02 E-value=3.4e-08 Score=76.61 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=100.9
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-------ceEEEEEeeCCCEEEE-----------------
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVC----------------- 54 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~----------------- 54 (203)
++|+|||++|+++.. ++.|.++|+.+++.+..+..... .-..+.+++++++++.
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 578999999988764 57899999999988776654211 0111334444443332
Q ss_pred --------------------ecCCCeEEEEEcCCccc-cceeeec---------cCCCceeEE-EeeCCCEEEEEcC---
Q 028806 55 --------------------GSQSGTVLLYSWGYFKD-CSDRFVG---------LSPNSVDAL-LKLDEDRVITGSE--- 100 (203)
Q Consensus 55 --------------------~~~d~~i~~wd~~~~~~-~~~~~~~---------~~~~~v~~~-~~~~~~~l~~~~~--- 100 (203)
.+..+.+.+.|+..... .+..+.. ........+ ++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 22334444555431110 0001000 000111224 7899888887653
Q ss_pred -------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 101 -------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 101 -------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
.+.|.++|+.+.+.+..+... . ....+.|+|+++ ++++.. .++.|.++|+.+.+....
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG-H-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC-C-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 347999999999999988765 2 478999999998 888887 589999999999876543
No 217
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.02 E-value=4.5e-08 Score=72.42 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=98.1
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEe-ecC----CccceEEEEEeeCCCEEEEecCC---------------C
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SEF----SEEELTSVVLMKNGRKVVCGSQS---------------G 59 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~ 59 (203)
++++++ ++++++.. .+.|.+|+.. ++.... ... ....+.++++.++++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 357788 66555554 3479999988 665433 221 12357899999999888776654 4
Q ss_pred eEEEEEcCCccccceeeeccCCCceeEE-Ee----eCCCEEEEE-cCCCcEEEEEcc-CCc-----eeeeeccCCCCceE
Q 028806 60 TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK----LDEDRVITG-SENGLISLVGIL-PNR-----IIQPIAEHSEYPIE 127 (203)
Q Consensus 60 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~----~~~~~l~~~-~~d~~i~~~d~~-~~~-----~~~~~~~~~~~~i~ 127 (203)
.|..|+.. +... .+.. .......+ ++ |+++.++.+ ..++.|.+|++. ++. ....+..+....+.
T Consensus 154 ~l~~~~~~--g~~~-~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD--GQMI-QVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp EEEEECTT--SCEE-EEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred eEEEECCC--CCEE-Eecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence 56666653 3332 2222 23345666 88 998766555 567889999986 443 22233333202578
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++++++|+++++...++.|.+||..++.
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 89999999888887788899999987544
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.96 E-value=2.1e-07 Score=69.76 Aligned_cols=146 Identities=7% Similarity=0.073 Sum_probs=94.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~ 70 (203)
++|+|+|+++++. . ..|.+|+..+++....... ....+..++++|+|+++++... .+.|+.++ . +
T Consensus 95 i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g 169 (326)
T 2ghs_A 95 LAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--G 169 (326)
T ss_dssp EEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--T
T ss_pred EEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--C
Confidence 3578888877765 3 4599999988765432221 1246889999999997765432 24555555 2 3
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEcc--CC-ce-----eeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGIL--PN-RI-----IQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~--~~-~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.. ..+.. .......+ |+|+++.++.+ +.++.|.+|++. ++ .. ...+..... .+..++++++|.+.++
T Consensus 170 ~~-~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 170 KV-TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNA 246 (326)
T ss_dssp EE-EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEE
T ss_pred cE-EEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEE
Confidence 32 22322 33345667 89999877655 456889999986 55 32 222222222 5678999999987776
Q ss_pred EeCCCcEEEEeCCC
Q 028806 141 ISHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~~~d~~i~iwd~~~ 154 (203)
...++.|.+|+...
T Consensus 247 ~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 247 RWGEGAVDRYDTDG 260 (326)
T ss_dssp EETTTEEEEECTTC
T ss_pred EeCCCEEEEECCCC
Confidence 66678899999743
No 219
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=1.7e-07 Score=68.07 Aligned_cols=154 Identities=9% Similarity=0.046 Sum_probs=104.0
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-ceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++.++++.+. ++.|+++|+.+++.+..+..... ....+++. +..|+.+ -.++.+.++|..+ .+.+..+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-~~v~~~i 102 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-LSNIKNF 102 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT-TEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC-CcEEEEE
Confidence 468888755555443 58999999999998887653221 22344544 5555544 4588999999874 4566666
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ....-+. ++++|+.++++..++.|.++|..+.+.+..+..... ..+..+.|. ++...+....++.|.+.|.
T Consensus 103 ~~-g~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 103 TH-QMKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp EC-CSSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EC-CCCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence 54 3011122 577888888888888999999999888777754311 135678888 6654444446789999999
Q ss_pred CCcccCCC
Q 028806 153 DDILKGSG 160 (203)
Q Consensus 153 ~~~~~~~~ 160 (203)
.++.....
T Consensus 180 ~tg~V~~~ 187 (266)
T 2iwa_A 180 KDGTLLGW 187 (266)
T ss_dssp TTCCEEEE
T ss_pred CCCcEEEE
Confidence 99876544
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.91 E-value=5e-08 Score=72.36 Aligned_cols=143 Identities=8% Similarity=0.069 Sum_probs=92.3
Q ss_pred CcccccCCEEEE----EcC-------------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----
Q 028806 1 MTFAADAMKLLG----TSG-------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~----~~~-------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (203)
++++|+|+++++ |.. .+.|..++..+++..... .......++|+|+++.|+++...
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 357888987776 332 256777887666543332 33456789999999988777654
Q ss_pred -CeEEEEEcCCccc-cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 59 -GTVLLYSWGYFKD-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 59 -~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
+.|.+|++...+. ....+..........+ +.++|++ .+++.++ |.+|+. .++.+..+..+ . .+.+++|.|++
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQ 288 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECT-TSCEEEEEECS-S-CCCEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECC-CCCEEEEEECC-C-ceeEEEEeCCC
Confidence 6899999863220 0111111012334556 7889984 4444444 999997 57777777665 3 47889999999
Q ss_pred CeEEEEeCCCcEEEEe
Q 028806 136 KFLGSISHDSMLKLWD 151 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd 151 (203)
+.|+.++.+ .|+.++
T Consensus 289 ~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 289 QRLFITGGP-CLWMLP 303 (305)
T ss_dssp CEEEEEETT-EEEEEE
T ss_pred CEEEEEcCC-eEEEEE
Confidence 888887765 444444
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.89 E-value=1e-07 Score=73.88 Aligned_cols=113 Identities=9% Similarity=-0.090 Sum_probs=84.6
Q ss_pred ccCCEEEEEcC-C----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCCc
Q 028806 5 ADAMKLLGTSG-D----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYF 69 (203)
Q Consensus 5 p~~~~l~~~~~-d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~ 69 (203)
|+++.++++.. + +.|.++|..+.+.+..+.....+ .++++|++++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 45666655543 2 69999999999999888765555 899999999888876 367899999975
Q ss_pred cccceeeeccC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028806 70 KDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 121 (203)
...+..+.. . ......+ ++|+|+++++++. ++.|.++|+.+++.+..+...
T Consensus 159 ~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 159 FLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp CCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 345554432 1 1223445 8999999999874 578999999999988887653
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.89 E-value=4.1e-08 Score=75.01 Aligned_cols=151 Identities=11% Similarity=-0.005 Sum_probs=101.1
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCc-------cceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
|++||+|++++++. .++.|.+||..+.+.+..+.... .....++++|||+++++++. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 47899999887765 35789999999998887764321 23557899999999988864 6899
Q ss_pred EEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCC---CCceE-EEEEe-CCC
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS---EYPIE-SLALS-HDR 135 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~---~~~i~-~i~~~-~~~ 135 (203)
.++|+.+ .+.+..+.. . + ...++......+++.+.||.+.+.++.+ ++........- ..++. ...|. ++|
T Consensus 163 sVID~~t-~~vv~tI~v-~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEG-KAFKRMLDV-P-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTT-TEEEEEEEC-C-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCC-CcEEEEEEC-C-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999975 455666543 2 2 1222433456777888899988888876 55432211110 11222 24665 577
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028806 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++ .+.++.+++.|+.+..
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSS
T ss_pred cEEE-EeCCCEEEEEECCCCc
Confidence 5544 5568999999997653
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.88 E-value=2.1e-07 Score=69.78 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=88.3
Q ss_pred cccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcC-Ccc-cc
Q 028806 2 TFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWG-YFK-DC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~-~~~-~~ 72 (203)
+++|+|+++++... .+.|..++ +++... +.........++|+|+++.++.+ ..++.|.+|++. ..+ ..
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 57889987665532 24566666 454432 22233456789999999877554 457899999985 122 11
Q ss_pred --ceee---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEEe
Q 028806 73 --SDRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (203)
Q Consensus 73 --~~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~ 142 (203)
...+ .. ....+..+ +.++|.++++....+.|.+|+. +++.+..+..+.. .+.+++|. |++..|++++
T Consensus 217 ~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 217 GKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred cCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 1122 22 23345666 7889987777666788999998 5777777766533 68999998 8888776555
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.85 E-value=1.7e-07 Score=77.21 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=104.5
Q ss_pred cccccCCEEEEEcCCCe-------------------EEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCCC---
Q 028806 2 TFAADAMKLLGTSGDGT-------------------LSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~-------------------i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (203)
+++|+..+|+.+..++. |..+|..+++.+..++. |. .++.......+++
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 45677888888877763 99999999998877653 21 1222223334564
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccC---------------------------C----------C-ceeEE-EeeC
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLS---------------------------P----------N-SVDAL-LKLD 91 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------------------------~----------~-~v~~~-~~~~ 91 (203)
.++.++.+|.++++|..+ ++.+....... . . .-..+ ++|+
T Consensus 321 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 788899999999999875 34331111000 0 0 01113 6777
Q ss_pred CCEEEEEcC---------------------------------------------CCcEEEEEccCCceeeeeccCCCCce
Q 028806 92 EDRVITGSE---------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPI 126 (203)
Q Consensus 92 ~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~i 126 (203)
..++++... +|.|..||+.+++.+..+..+. ++
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~ 477 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IF 477 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--Cc
Confidence 777766421 3779999999999998887663 34
Q ss_pred EEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 127 ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 127 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....+...+..+++++.|+.|+.||.++++..
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 44466667889999999999999999998754
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=1.3e-10 Score=88.83 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=77.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.+++..+++++.|+.|+.||..+++.+.....+.. .+. ...+. .+..+++++.++.++.||..+ ++.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~-~~ 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSS-AF 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecC-CC
Confidence 34666777778999999999988876655543321 110 01111 345677788899999999975 444444443 22
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC---CeEEEEeCCCcEEEEeCCCccc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.. ++|++..+++++.++.|+.||..+|+.+..+..+ ......+.++. ..+++++.++.|+.||..++..
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 13 5678889999999999999999999887665432 12223344432 5677788899999999988764
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.85 E-value=3.4e-07 Score=69.09 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=94.0
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeec-------CCccceEEEEEeeCCCEEEEecC-----CCeEEEEEc
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~ 66 (203)
|+++|+|+++++... ++.++||.+.+++.. .+. .+-..+..++++++++++++-.. ...|.+||+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 468899998888642 342445554455443 221 23457899999999876665433 578999998
Q ss_pred CCccccceeeec-----cCCCceeEE-EeeCCCEEEEE-c---CCCcEEEEEccCCceeeeeccCC--------------
Q 028806 67 GYFKDCSDRFVG-----LSPNSVDAL-LKLDEDRVITG-S---ENGLISLVGILPNRIIQPIAEHS-------------- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~-~---~d~~i~~~d~~~~~~~~~~~~~~-------------- 122 (203)
.+ +..+..+.. .+...+..+ +++++..++.+ . .++.|.+||+.+++....+..|.
T Consensus 101 ~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 101 LN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp TT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred CC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 74 343444432 012345677 78765555444 3 56789999998877665543310
Q ss_pred --------------CCceEEEEEeCCCCeEEEEeCCC-cEEEEe
Q 028806 123 --------------EYPIESLALSHDRKFLGSISHDS-MLKLWD 151 (203)
Q Consensus 123 --------------~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd 151 (203)
...+..|+|+|+++.|+++...+ .|..++
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 01357899999999888887655 455554
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=3.4e-07 Score=70.93 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=99.5
Q ss_pred ccCCEEE-EEcCCCeEEEEEcCCC----eEEEeec-------CCccceEEEEEeeCCCEEEEecCC------CeEEEEEc
Q 028806 5 ADAMKLL-GTSGDGTLSVCNLRKN----TVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSW 66 (203)
Q Consensus 5 p~~~~l~-~~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~ 66 (203)
+++++|+ .+..++.|+|+|+.+. +...+++ ........+...|++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7787764 5667889999998754 6666663 112345677888999 66665544 78999998
Q ss_pred CCccccceeeeccCCC---ceeEE-EeeCCCEEEEEc-------------------CCCcEEEEEccCCceeeeeccCC-
Q 028806 67 GYFKDCSDRFVGLSPN---SVDAL-LKLDEDRVITGS-------------------ENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
.+ .+.+..+.. ... .-+.+ |+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 172 ~T-~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YS-FEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TT-CCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CC-CeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 75 455555542 212 23346 799999998885 36789999999988888876641
Q ss_pred CCceEEEEE--eCCCCeEEEEe------CCCcEEEEeC
Q 028806 123 EYPIESLAL--SHDRKFLGSIS------HDSMLKLWDL 152 (203)
Q Consensus 123 ~~~i~~i~~--~~~~~~l~~~~------~d~~i~iwd~ 152 (203)
+.....+.| +|+++++++++ .+++|.+|..
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 123445555 99999887766 4567765543
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=2.8e-07 Score=71.36 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=101.7
Q ss_pred cccccCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEec----------------
Q 028806 2 TFAADAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGS---------------- 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~---------------- 56 (203)
..+|+| +++++..+ +.|.++|..+.+.+..+..... --..+.|+|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 356888 66665544 7899999999998888863322 234588899999988884
Q ss_pred ---CCCeEEEEEcCCccccceeeeccCC--CceeEE-E--eeCCCEEEEEcC------CCcEEEEEccCCce--eeee--
Q 028806 57 ---QSGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL-L--KLDEDRVITGSE------NGLISLVGILPNRI--IQPI-- 118 (203)
Q Consensus 57 ---~d~~i~~wd~~~~~~~~~~~~~~~~--~~v~~~-~--~~~~~~l~~~~~------d~~i~~~d~~~~~~--~~~~-- 118 (203)
...+|.+||+.. +..+..+.. .. .....+ | +|+++++++++. ++.|.+|....+.. ++.+
T Consensus 223 ~~~~~d~V~v~D~~~-~k~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 223 KDRYGNRIHFWDLRK-RKRIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp HHHSCCEEEEEETTT-TEEEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhccCCEEEEEECCC-CcEeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 368999999975 455555554 21 223344 4 999999888774 55777765544321 1111
Q ss_pred ccC---------------CCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 119 AEH---------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 119 ~~~---------------~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
... .......|.++|||++|+++. ..+.|.+||+.
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000 011467899999999998877 57899999985
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=1.3e-07 Score=71.42 Aligned_cols=152 Identities=7% Similarity=0.033 Sum_probs=95.8
Q ss_pred CcccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCCCEE-EEec---CCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKV-VCGS---QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~~wd 65 (203)
|+++|+++++++-.. ++.|.+||+.+++.+..+..+ ...+..+++++++..+ ++-. .++.|.+||
T Consensus 72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d 151 (343)
T 2qe8_A 72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD 151 (343)
T ss_dssp EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence 467888876665433 578999999998876655422 2356889999865454 4444 578999999
Q ss_pred cCCccccceeeeccC-----------------------------CCceeEE-EeeCCCEEEEEcCCC-cEEEEEcc---C
Q 028806 66 WGYFKDCSDRFVGLS-----------------------------PNSVDAL-LKLDEDRVITGSENG-LISLVGIL---P 111 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~-----------------------------~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~---~ 111 (203)
+.. +.....+.. | ...+..+ ++|+++.|+++...+ .|..++.. .
T Consensus 152 ~~~-g~~~r~~~~-~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 152 LQT-GLAARVLQG-YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp TTT-CCEEEECTT-CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred CCC-CCEEEEecC-CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence 863 232222211 1 0124567 899999888887665 45555432 1
Q ss_pred Cc-----eee--eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 112 NR-----IIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 112 ~~-----~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+. ... ...++.. ....++++++|+++++...++.|.+||..++
T Consensus 230 ~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp TTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred CCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 11 000 1112212 3457899999998888888899999998433
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=5.8e-07 Score=64.80 Aligned_cols=152 Identities=9% Similarity=0.069 Sum_probs=102.8
Q ss_pred cccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|+ ++.++.+++.+| .|+++|+.+++.+..+.... ......+.+++..|+... .++.+.+||..+ ...+..+..
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~~ 125 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFNY 125 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEEC
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEEC
Confidence 466 565666666655 89999999999888776433 333333444565666554 588999999975 466666664
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-C---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-E---YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.... +. +.+++..|+.+...+.|.++|..+.+.+..+.... + ..+..+.|. +|+..+..-.+..|.+.|.++
T Consensus 126 -~~eG-~g-lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 126 -DGEG-WG-LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp -SSCC-CC-EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred -CCCc-eE-EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 3211 22 45778888877778889999999998887765531 1 134567776 665544444678999999988
Q ss_pred cccCCC
Q 028806 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.....
T Consensus 202 G~V~~~ 207 (262)
T 3nol_A 202 GKVTGI 207 (262)
T ss_dssp CBEEEE
T ss_pred CcEEEE
Confidence 876543
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=3.3e-07 Score=75.37 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=107.6
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCC---C
Q 028806 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNG---R 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~ 50 (203)
+++|++.+|+.+..++ .|..+|..+++.+..++. |. .....+....+| .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4567788888877654 599999999998877653 21 122333444577 6
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccCC-----------Cce------------------------eEE-EeeCCCE
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-----------NSV------------------------DAL-LKLDEDR 94 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----------~~v------------------------~~~-~~~~~~~ 94 (203)
.++.++.+|.++++|..+ ++.+..+.. .. .++ ..+ ++|+..+
T Consensus 329 ~l~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTN-GKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 788999999999999875 344333221 10 000 133 6888888
Q ss_pred EEEEcC-------------------------------------------CCcEEEEEccCCceeeeeccCCCCceEEEEE
Q 028806 95 VITGSE-------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 95 l~~~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~ 131 (203)
+++... .+.|..||+.+++.+..+... . ++....+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~ 484 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-S-PWNGGTL 484 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-S-SCCCCEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-C-CCcCcce
Confidence 777543 167999999999998887654 2 4555567
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
...+..+++++.|+.+++||+++++....
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 77888888899999999999999876543
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=5.5e-07 Score=64.96 Aligned_cols=147 Identities=12% Similarity=-0.018 Sum_probs=99.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.++.+.+.+|.|+++|+.+++.+..+ - ..........+++..|+ ..-.++.+.+||..+ .+.+..+.. ... -+
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~~e-Gw 139 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERTTRY-SGE-GW 139 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEEEEC-SSC-CC
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEEEeC-CCc-ee
Confidence 456677788889999999999877666 2 22333322334444444 444688999999975 466666664 322 23
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. +.+++..|+.+...+.|.++|..+.+.+..+..... ..+..+.|. +|+..+..-.+..|.+.|.+++.....
T Consensus 140 G-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 140 G-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp C-EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred E-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 3 357788888888889999999999988877754321 134667777 665444444678999999998876543
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=6.4e-06 Score=59.69 Aligned_cols=151 Identities=9% Similarity=-0.035 Sum_probs=95.1
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++.|+ +-...+.|.++++........+.........+++++++..|+.+ ...+.|.++++.. .....+..
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~ 118 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFD 118 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEE
Confidence 35777665554 44556889999987654433333333567899999976555544 4577899999863 22223322
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
........+ ++|++..|+.+.. .+.|..+++.. .....+. .... ....++++|++..|+.+. ..+.|.++++
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCC-CCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 022345677 8997776666554 36788888753 3222222 2212 568899999887766555 5678999998
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
.+.
T Consensus 197 ~g~ 199 (267)
T 1npe_A 197 AQP 199 (267)
T ss_dssp TEE
T ss_pred CCC
Confidence 754
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=5.9e-07 Score=71.83 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=100.2
Q ss_pred ccCCEEEEEc------------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-------
Q 028806 5 ADAMKLLGTS------------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG------- 59 (203)
Q Consensus 5 p~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 59 (203)
|+++++++++ .++.+.++|..+.+.+..+.-.. ....++++|+|+++++++.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 8899988874 34679999999998888776433 456688999999998887543
Q ss_pred -------------------------------eEEEEEcCCc-ccc-ceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcE
Q 028806 60 -------------------------------TVLLYSWGYF-KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLI 104 (203)
Q Consensus 60 -------------------------------~i~~wd~~~~-~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i 104 (203)
.|.+.|.... +.. +..+.. .. ...++ ++|||+++++++. +..|
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~-~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-AN-NPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ES-SCCCEEECTTSSEEEEECTTSSBE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CC-CceEEEEcCCCCEEEEeCCCCCeE
Confidence 2555555431 112 233332 22 33445 8999999887764 7889
Q ss_pred EEEEccCCc------------eeeeeccCCCCceEEEEEeCCCCeEE-EEeCCCcEEEEeCCC
Q 028806 105 SLVGILPNR------------IIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDD 154 (203)
Q Consensus 105 ~~~d~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~iwd~~~ 154 (203)
.++|+.+.+ ....+... .....++|+|+| +++ +...|++|.+|++.+
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPELG--LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCCC--CCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 999998652 33444433 257889999999 554 555899999999876
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=1.5e-06 Score=71.45 Aligned_cols=144 Identities=9% Similarity=0.039 Sum_probs=99.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----------cce------------------------EEEEEeeCCCEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----------EEL------------------------TSVVLMKNGRKV 52 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l 52 (203)
..|+.++.+|.|+++|..+++.+..+.... .++ ..++++|+..++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578888999999999999998876554211 011 146788888888
Q ss_pred EEecC-------------------------------------------CCeEEEEEcCCccccceeeeccCCCceeEE-E
Q 028806 53 VCGSQ-------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 53 ~~~~~-------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
++... .+.|..||+.+. +.+-.+.. ..++... +
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~--~~~~~~g~~ 484 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEH--VSPWNGGTL 484 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEE--SSSCCCCEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCC--CCCCcCcce
Confidence 76533 167999999764 44444433 2233333 6
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEeC----------------CCcEEEEe
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISH----------------DSMLKLWD 151 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~----------------d~~i~iwd 151 (203)
...+.+++.++.++.+++||+.+++.+..+.........-+.|.++|+. +++.+. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 7788899999999999999999999998887654322334667788864 444322 36788888
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
+..
T Consensus 565 l~~ 567 (677)
T 1kb0_A 565 VGG 567 (677)
T ss_dssp ETC
T ss_pred ccc
Confidence 764
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=1e-05 Score=57.76 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=100.2
Q ss_pred cccccCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|++ +.++.+.+.. ..|+++|+.+++.+..+..... .......+.+..|+. .-.++.+.+||..+ ...+..+..
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEEEEeC
Confidence 4554 4455555554 4899999999998887754322 322333334555554 44688999999975 466666664
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
... -+.+ .+++..|+.+..++.|.++|..+.+.+..+..... ..+..+.|. +|+..+..-.+..|.+.|.++
T Consensus 104 -~~~-Gwgl-t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 104 -PGE-GWAL-TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp -SSC-CCEE-EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred -CCC-ceEE-eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 332 2333 56777777777788999999999888877754321 135566665 565544444677899999998
Q ss_pred cccCCC
Q 028806 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.....
T Consensus 180 G~V~~~ 185 (243)
T 3mbr_X 180 GKVVAW 185 (243)
T ss_dssp CBEEEE
T ss_pred CCEEEE
Confidence 876543
No 237
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=6.3e-06 Score=64.18 Aligned_cols=148 Identities=5% Similarity=0.058 Sum_probs=91.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-C----eEEEEEcCCccccc-
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G----TVLLYSWGYFKDCS- 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~~wd~~~~~~~~- 73 (203)
|+|+| ++..|+.+...+.|+++++.++....... .......++|+++++.|+++... + .+.+++.. +...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~ 218 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKV 218 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceee
Confidence 46777 45555555444889999988776544433 45568899999999966666542 1 34444432 2221
Q ss_pred -eeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
..+.. . .....+ ++| ++.++++-...+.|..++...+................++|+|++++|+.+. ..+.|..
T Consensus 219 ~~~l~~-~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 219 ITELTK-G-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEEE-C-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeecc-C-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22322 2 233455 788 6666666666788999998766542222221112467899999999665554 6678999
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
++..
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8765
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.62 E-value=6.5e-06 Score=59.77 Aligned_cols=145 Identities=9% Similarity=-0.049 Sum_probs=98.5
Q ss_pred cCCEE-EEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 6 DAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 6 ~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
+++.| ++.-.++.+.++|..+.+.+.++... .. ...+++++..++++..++.|.++|..+. .....+.. ....
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGH 149 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCc
Confidence 35444 44456899999999999888888643 22 2346678887777777889999998753 44444432 0111
Q ss_pred ---ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------------CCceEEEEEeCCCCeEE-EEeCCC
Q 028806 83 ---SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------------EYPIESLALSHDRKFLG-SISHDS 145 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~-~~~~d~ 145 (203)
.+..+ |. ++...+.....+.|.+.|+.+++.+..+.... ......|+|+|+++.|+ ++...+
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 24455 55 66544444457899999999999888775420 11457999999987655 555778
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.+++.++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8999888664
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.60 E-value=3e-06 Score=67.82 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=103.3
Q ss_pred ccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCC-ccceEEEEE-e-eCCCEEEEec------------------CCCeEE
Q 028806 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFS-EEELTSVVL-M-KNGRKVVCGS------------------QSGTVL 62 (203)
Q Consensus 5 p~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~ 62 (203)
+||++|+.... ++.|.+.|+.+.++...++-. ...+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47888766554 567999999999887755422 245788887 5 8999998884 245788
Q ss_pred EEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCC--------------------------------------c
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--------------------------------------L 103 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--------------------------------------~ 103 (203)
+.|..+. +....+.- .. ....+ ++|+|+++++.+.+. .
T Consensus 179 vID~~t~-~v~~qI~V-gg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADKW-EVAWQVLV-SG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTTT-EEEEEEEE-SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCCC-eEEEEEEe-CC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8998753 44444432 23 33445 799999988877542 3
Q ss_pred EEEEEccC--Cce-eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 104 ISLVGILP--NRI-IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 104 i~~~d~~~--~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
|.+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+..
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 67777776 444 44554442 457899999999988776 68899999998763
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.59 E-value=2.3e-06 Score=70.60 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=89.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc----------------------------cc-----------eEEEEEeeCC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE----------------------------EE-----------LTSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----------------------------~~-----------v~~~~~~~~~ 49 (203)
.|+.++.+|.++++|..+++++....... .. -..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 67888899999999999998874332110 00 0126788887
Q ss_pred CEEEEecC---------------------------------------------CCeEEEEEcCCccccceeeeccCCCce
Q 028806 50 RKVVCGSQ---------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 50 ~~l~~~~~---------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
.++++... ++.|+.||+.+. +.+-.+.. +....
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~-~~~~~ 478 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPY-VTIFN 478 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEE-SSSCC
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccC-CCCcc
Confidence 77776422 377999999764 44444443 33222
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEE
Q 028806 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI 141 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~ 141 (203)
...+...+.+++.++.|+.|+.||.++|+.+..++........-+.|..+|+ |+++.
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 3346778889999999999999999999999888765432223467778886 44443
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.52 E-value=4.5e-05 Score=55.15 Aligned_cols=151 Identities=5% Similarity=-0.119 Sum_probs=91.6
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~ 76 (203)
|+++|++..| ++-...+.|.++++........+.........++++|++..|+.+.. .+.|..+++.. .....+
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~ 161 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRIL 161 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEE
Confidence 3567765544 44455678999988654322222222245789999997666655543 36888888752 333333
Q ss_pred e-ccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 77 V-GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 77 ~-~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. . .......+ ++|++..|+.+. ..+.|.++++........+... . ....++.. +..|+.+. ..+.|.++|.
T Consensus 162 ~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 162 AQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp ECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 2 2 23445667 899877776655 4678999998754433333322 2 34566654 45555555 5688999998
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 237 ~~g~~~ 242 (267)
T 1npe_A 237 AISKEM 242 (267)
T ss_dssp TTTEEE
T ss_pred CCCCce
Confidence 876543
No 242
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=2.8e-06 Score=70.72 Aligned_cols=151 Identities=7% Similarity=-0.013 Sum_probs=87.7
Q ss_pred ccc-ccCCEEEEEcC-C----CeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCc
Q 028806 2 TFA-ADAMKLLGTSG-D----GTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~-d----~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~ 69 (203)
+|| |||++||.+.. + ..|+++++.++ +.+.. .-......++|+||++.|+....+ ..|+++++.+.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 589 99998886533 2 35999999988 63211 001123468899999888776654 35777787643
Q ss_pred ccc-ceeeeccCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCc-ee--eeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 70 KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNR-II--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
... ...+..........+ |+|+|++|+.... ...|+++|+.++. .. ..+........+++.|+..+.+++..
T Consensus 258 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t 337 (751)
T 2xe4_A 258 QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT 337 (751)
T ss_dssp GGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred chhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence 211 122221022334455 8999999887653 3458888987652 12 33322222255666665444444444
Q ss_pred eCC----CcEEEEeCCC
Q 028806 142 SHD----SMLKLWDLDD 154 (203)
Q Consensus 142 ~~d----~~i~iwd~~~ 154 (203)
..+ ..|..+++.+
T Consensus 338 ~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 338 NEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CTTTCTTCEEEEEETTS
T ss_pred CCCCCCCcEEEEEcCCC
Confidence 333 3577777764
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.52 E-value=1.9e-05 Score=59.98 Aligned_cols=146 Identities=8% Similarity=-0.018 Sum_probs=94.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCC---------ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.+..|++++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|+.+|..+. ..+-..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG-~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG-TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC-CEEEEE
Confidence 4567788888899999999999887666542 1223222 2234567778888999999998754 444333
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. .......... .+..+++++.++.|..+|..+|+.+........ .. ...... +..++.++.++.|..+|
T Consensus 130 ~~-~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KV-AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EC-SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eC-CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 33 2221111122 245788888899999999999998877654321 10 112222 45677788889999999
Q ss_pred CCCcccC
Q 028806 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
..++...
T Consensus 205 ~~tG~~~ 211 (376)
T 3q7m_A 205 MEQGQMI 211 (376)
T ss_dssp TTTCCEE
T ss_pred CCCCcEE
Confidence 9877653
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=1.7e-05 Score=59.11 Aligned_cols=149 Identities=9% Similarity=-0.041 Sum_probs=92.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-C------------------CccceEEEEEee-CCCEEEEecCCCe
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-F------------------SEEELTSVVLMK-NGRKVVCGSQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~------------------~~~~v~~~~~~~-~~~~l~~~~~d~~ 60 (203)
++|++++++++++..++.|..|+..++....... . ....+..+++.+ +++ |+++...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence 4678888877788888999999987654432110 0 013578899997 555 454544455
Q ss_pred EEEEEcCCccccceeeec----cCCCceeEE-Eee-CCCEEEEEcC-----------------CCcEEEEEccCCceeee
Q 028806 61 VLLYSWGYFKDCSDRFVG----LSPNSVDAL-LKL-DEDRVITGSE-----------------NGLISLVGILPNRIIQP 117 (203)
Q Consensus 61 i~~wd~~~~~~~~~~~~~----~~~~~v~~~-~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~~~~ 117 (203)
+..+|... + .+..+.. ........+ +.+ +|.+.++-.. .+.|..||..+++....
T Consensus 103 i~~~d~~~-g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEG-G-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEECTTC-E-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCC-C-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88887652 2 2222221 011234566 788 8876665432 36688888766654332
Q ss_pred eccCCCCceEEEEEeCCCCeEEEE-eCCCcEEEEeCCC
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (203)
.... . ....++++|++++|+.+ ...+.|.+|++.+
T Consensus 181 ~~~~-~-~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 181 LKEL-H-VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEE-S-CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ccCC-c-cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2222 2 34679999999876655 4568899999875
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=1e-05 Score=66.52 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=100.6
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCCC---
Q 028806 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (203)
++.|+..+++.++.++ .|..+|..+++.+..++. |. .+.....+..+++
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 3556777888877665 499999999998877753 21 2333333444665
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccCC------------Cc------------------------eeEE-EeeCCC
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP------------NS------------------------VDAL-LKLDED 93 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~------------------------v~~~-~~~~~~ 93 (203)
.++.++.+|.++++|..+ ++.+..... .. .+ -..+ ++|+..
T Consensus 316 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTN-GKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 688899999999999875 343321110 00 00 0012 566555
Q ss_pred EEEEE------------------------------------cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 94 RVITG------------------------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 94 ~l~~~------------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+++.. ..+|.|..||+.+++.+.....+. +.....+...+.+
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL 471 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence 55431 123779999999999987776542 3444455567788
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++.|+.|++||.++++..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEECCcccchhhhhhcChhh
Confidence 889999999999999988654
No 246
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.41 E-value=1.8e-06 Score=65.84 Aligned_cols=125 Identities=11% Similarity=-0.152 Sum_probs=87.3
Q ss_pred eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCCccccceeeeccC-------
Q 028806 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVGLS------- 80 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~------- 80 (203)
+|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||+.+ ...+..+.. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v-~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIEL-PDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEE-TTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEEC-CCcccccc
Confidence 8889999999999888765555 799999999988886 368899999985 455666543 3
Q ss_pred CCceeEE-EeeCCCEEEEEcC--CCcEEE--EEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSE--NGLISL--VGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (203)
......+ ++|+|++++++.. ...|.+ +|+.+ +..+... + . +.+.|++. .+++.+.|+.+.+.++.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S-C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S-C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C-c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 1234456 8999999999875 456888 89877 4444332 1 1 12334443 344555677777777765
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.40 E-value=3.3e-05 Score=55.66 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred ccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 5 ADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
++++.|.. ...++.+.+||..+.+.+.++..... ...+.+++..|+.+...+.|.++|..+. ..+..+.. ....
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~ 169 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGE 169 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCc
Confidence 34555544 44689999999999998888875332 2344467887877777788999998753 44444432 0122
Q ss_pred c---eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-----------CCceEEEEEeCCCCeEEEEeC
Q 028806 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-----------EYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~~~~~ 143 (203)
+ +..+ +. +|...+..-....|.+.|..+++.+..+.... ..-...|+|+|+++.|++.+.
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 3 3345 44 67555444457889999999999887765420 114578999998887776663
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.39 E-value=4.1e-05 Score=58.10 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.++.|..+|..+++.+..... .....+.. ++..++.++.++.+..+|..+. ..+..........+..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccC
Confidence 45677777889999999999988776653 22333433 4667778888899999998754 4333332101112222
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEe
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. ..+..|++++.+|.|.++|..+++.+........ .+.. ... .+..|+.++.+|.|+.|+
T Consensus 314 ~~-~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 314 PV-LYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CE-EETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CE-EECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 21 2356888899999999999999998877765322 2322 222 245788888899999986
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.39 E-value=1e-05 Score=60.05 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=91.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..|..++.++.|..++.. ++.......+...+.++...+++. ++.++.++.|..||.. +.....+.. ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-CCCceee
Confidence 3456777778999999988 766666555445556666666666 5556777899999976 444444444 4445555
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+ ..+++.++ .++ +.|..+| .+++.+........ .+.++...+++. |..++.++.|..++..
T Consensus 182 ~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 182 ASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp CEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred eEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 5 45666644 444 7789999 77777766655433 577888888775 4556667788888753
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=6.3e-05 Score=54.30 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=87.6
Q ss_pred ccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 5 ADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
++++.| +....++.+.+||..+.+.+.++...... +.+ .+++..|+.+..++.|.++|..+. +.+..+.. ....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~ 178 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQ 178 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCc
Confidence 344433 44556899999999999998888753322 333 467888888877899999998753 44444432 0222
Q ss_pred c---eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCCceEEEEEeCCCCeEEEEe
Q 028806 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+ +..+ |. +|...+..-....|.+.|..+++.+..+... ...-...|+|+|++..|++.+
T Consensus 179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 3344 33 6755544445788999999999988776432 112467899999876665555
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.33 E-value=1.4e-05 Score=59.24 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=87.7
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+++.+++. + +.|..++ .+++...........+.++...+++.. +.++.++.+..++.. +..+..+.. ....+
T Consensus 186 ~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~--g~~~~~~~~-~~~~~ 257 (330)
T 3hxj_A 186 KDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPD--GTEKWRFKT-GKRIE 257 (330)
T ss_dssp TTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTT--SCEEEEEEC-SSCCC
T ss_pred CCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCC--CCEeEEeeC-CCCcc
Confidence 45554443 3 7788999 676666666555556777787777654 445567778888743 344444443 33333
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+ ..+++ .|+.++.++.|..+|. +++.+..+... ...+.++...++++ |..++.+|.+++.......
T Consensus 258 ~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 258 SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 334 34344 5677788888999995 67776666544 22566777777775 5667889999988765443
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00017 Score=51.48 Aligned_cols=132 Identities=9% Similarity=0.024 Sum_probs=86.6
Q ss_pred CCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCc-
Q 028806 7 AMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS- 83 (203)
Q Consensus 7 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~- 83 (203)
++.| +....++.+.+||..+.+.+.++...... +.+ .+++..|+.+..++.|.++|..+. ..+..+.. .+..+
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPL 149 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEEC
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCccc
Confidence 4444 44456899999999999998888754332 334 467777777777889999998753 44444432 02222
Q ss_pred --eeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCCceEEEEEeCCCCeEEEEe
Q 028806 84 --VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 --v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+..+-..+|..++..-....|.+.|..+++.+..+... ...-...|+++|++..|++.+
T Consensus 150 ~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 150 DNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 33341236665544445778999999999988776422 112457899999887766665
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.27 E-value=0.00032 Score=50.58 Aligned_cols=153 Identities=8% Similarity=0.046 Sum_probs=97.1
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~ 76 (203)
|+|+|+++.| ++...++.|...|.. ++.+..+.- ...-...|++.+++.++++.-.++.+.++++...+. .+...
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~ 110 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKI 110 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence 4788887655 456778899999988 777766632 224577889888887777766678899998864332 11111
Q ss_pred e-----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeec-------cCCCCceEEEEEeCCCCe-EE
Q 028806 77 V-----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIA-------EHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~-----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~-------~~~~~~i~~i~~~~~~~~-l~ 139 (203)
. .........+ ++|.++.|+++.......+|.+. ....+..+. .+ -..+.+++++|.... ++
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~-~~d~S~l~~dp~tg~lli 189 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT-LDDVSGAEFNQQKNTLLV 189 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC-SSCCCEEEEETTTTEEEE
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc-cCCceeEEEcCCCCeEEE
Confidence 1 0022345677 89999888888776666666654 111122111 11 125788999996554 44
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
.....+.|.++|....
T Consensus 190 LS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE 205 (255)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EECCCCeEEEEcCCCC
Confidence 4446677888886544
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.00055 Score=50.92 Aligned_cols=150 Identities=9% Similarity=-0.041 Sum_probs=89.7
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|++.++.|+ +-...+.|..+++.+ ......+...-.....+++.+.+..| ++-...+.|.++++.. ....
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~ 112 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 112 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceE
Confidence 35777655554 445568898888875 22222232222345788988755544 4545678999999862 3333
Q ss_pred ee-eccCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 75 RF-VGLSPNSVDAL-LKLDEDRVITGSEN--GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~~-~~~~~~~v~~~-~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
.+ .. .......+ +.|.+..|+.+... +.|..+++. |.....+....-.....++++|++..|+.+. ..+.|..
T Consensus 113 ~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 113 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 33 32 33456777 78877766665543 678888875 3333333211122568999999877776655 5578999
Q ss_pred EeCCC
Q 028806 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
+++..
T Consensus 191 ~d~dg 195 (316)
T 1ijq_A 191 IDVNG 195 (316)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 99865
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.00015 Score=56.41 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=86.6
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC---C-eEEEEEcCCccccc-
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---G-TVLLYSWGYFKDCS- 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~~wd~~~~~~~~- 73 (203)
|+|+|+ ...|+.+...+.|+.++..++...... ........++++++++++++-... . .+..++.. ....
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~~ 220 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFTE 220 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTCC
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCeec
Confidence 467774 344444433388999999887665443 344568899999999944443211 1 23333322 1111
Q ss_pred -eeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEe-CCCcEE
Q 028806 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~ 148 (203)
..+.. ......+ ++| ++.++++-..++.|+.++..++.....+ ..........++|+|++++|+.+. ..+.|+
T Consensus 221 ~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 221 RLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp EEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 11222 2223444 788 5665555556788999998877652222 222121235799999999666555 567899
Q ss_pred EEeCC
Q 028806 149 LWDLD 153 (203)
Q Consensus 149 iwd~~ 153 (203)
.++..
T Consensus 299 ~~~~d 303 (433)
T 4hw6_A 299 RVDYN 303 (433)
T ss_dssp EEEBC
T ss_pred EEeCC
Confidence 97764
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=9.5e-05 Score=59.66 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=87.1
Q ss_pred eEEEEEcCCCeEEEeecCC----------ccceEEEEEeeCCC---EEEEecCCCeEEEEEcCCccccceeeeccCC---
Q 028806 18 TLSVCNLRKNTVQTRSEFS----------EEELTSVVLMKNGR---KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 81 (203)
.|..+|..+++.+..++.. ..++ -+...++++ .++.++.+|.++++|..+. +.+..+.. ..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~-~~~~~ 349 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKV-DPAVN 349 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEES-STTCC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecc-cCCcc
Confidence 6999999999988776532 1222 122334674 5677888999999998753 33332221 10
Q ss_pred ----------Cce--------------------------eEE-EeeCCCEEEEEc-------------------------
Q 028806 82 ----------NSV--------------------------DAL-LKLDEDRVITGS------------------------- 99 (203)
Q Consensus 82 ----------~~v--------------------------~~~-~~~~~~~l~~~~------------------------- 99 (203)
.++ ..+ ++|+..++++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 011 122 566666666543
Q ss_pred ------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 100 ------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 100 ------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.|..||+.+++.+..+.... .+....+...+..++.++.|+.|+.||.++++..
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 34789999999999887775442 2333333345667778889999999999988764
No 257
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.24 E-value=0.00012 Score=54.51 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=95.9
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEe-ecC----C--ccceEEEEE---eeCCCEEEEecC-------------
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTR-SEF----S--EEELTSVVL---MKNGRKVVCGSQ------------- 57 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~~------------- 57 (203)
+|.+... ++++.-..++|..|+...+..... +.. . ...+..|.| .|+++++++...
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 5766444 445555789999999886543332 322 1 124688999 588777775432
Q ss_pred CCeEEEEEcC---Cccccceeee--ccC---------C-CceeEE-EeeCCCEEEEEcCC-CcEEEEEccCCceeeeecc
Q 028806 58 SGTVLLYSWG---YFKDCSDRFV--GLS---------P-NSVDAL-LKLDEDRVITGSEN-GLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 58 d~~i~~wd~~---~~~~~~~~~~--~~~---------~-~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~ 120 (203)
+..|..||+. +. ..+.... ... . .....+ ..++|+..++++.. +.|..++... +.+..+..
T Consensus 99 ~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEE
T ss_pred CCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeee
Confidence 5779999987 43 2222221 100 1 124556 68899999988887 8877777543 33322211
Q ss_pred -----CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 121 -----HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 121 -----~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
........|+++|++..|++....+.|..+|+.+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1111356899999999888887799999999873
No 258
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.00023 Score=56.22 Aligned_cols=150 Identities=7% Similarity=0.085 Sum_probs=89.4
Q ss_pred Ccccc-cCCEEEEE-cCCCeEEEEEcCCCeEEEeecCC---ccceEEEEE-------eeCCCEEEEecCCC-------eE
Q 028806 1 MTFAA-DAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVL-------MKNGRKVVCGSQSG-------TV 61 (203)
Q Consensus 1 l~~sp-~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-------~i 61 (203)
|+|+| ++..|+.+ ...+.|+++|+.++.....+... ......|+| ++++..|+++...+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 46787 34444444 44467999999887765544332 235889999 99999777666543 25
Q ss_pred EEEEcCCccccc-----eeeeccCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEcc-------CCce-----------ee
Q 028806 62 LLYSWGYFKDCS-----DRFVGLSPNSVDAL-LKLDEDR-VITGSENGLISLVGIL-------PNRI-----------IQ 116 (203)
Q Consensus 62 ~~wd~~~~~~~~-----~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~~~d~~-------~~~~-----------~~ 116 (203)
.+++....+... ..+.. ...+ ..+ .+|++.. +++-...+.|..+|+. ++.. ..
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~-~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAA-YKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEE-ESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EEEecCCCCceeecccceeecc-CCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 566533212221 22322 2323 344 7885444 4455567889999997 5543 11
Q ss_pred e-eccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 117 P-IAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 117 ~-~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. +........+.|+|+|++++|+.+. ....|+.++.
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1 2111122457899999999655554 5677888654
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.23 E-value=0.0001 Score=54.83 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcc-ccceeeeccCCCceeEE-EeeCCC
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
+.|..|+..+++...... .-.....++|+|+++.|+++ ...+.|.+|++.... .....+.. ..+ ...+ +.++|+
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSC
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCC
Confidence 668888877665432221 12335678999999866655 556899999986311 11122222 223 5666 788998
Q ss_pred EEEEEcC----------CCcEEEEEccCCceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 94 RVITGSE----------NGLISLVGILPNRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 94 ~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++... .+.|..+|. .++.+..+..... ..+.++++ .+++.+++....+.|.++++....
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 6666544 456888886 4666666644321 14566666 355555555577889999886433
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.21 E-value=0.00062 Score=51.41 Aligned_cols=151 Identities=12% Similarity=0.028 Sum_probs=90.8
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
|+|++..+.|+ +-...+.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.. .....+.
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 155 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 155 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe
Confidence 35666555444 33456778888877654333333223345678888755544 5555578899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ ++|.+..|+.... . +.|..+++... ....+..........++++|++..|+.+. ..+.|..+++.
T Consensus 156 ~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 156 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp T-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 33456777 7887666665544 4 67888887643 33333221122568899999777766555 56789999886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 234 G~ 235 (349)
T 3v64_C 234 GS 235 (349)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.20 E-value=0.00048 Score=50.85 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=85.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++++++-...+.|..|+.... ....+.. ...+..+++.++++++++.... ..|..++... +.. ..+..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~-~~~~~ 112 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTV-ETLLT 112 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCE-EEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeE-EEEEe
Confidence 468889887777767889999997754 3333322 3568899999999866654332 2466666543 232 22222
Q ss_pred c-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-eeee-------cc-CCCCceEEEEEeCCCCeEEEEe-CCCc
Q 028806 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-IQPI-------AE-HSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~-------~~-~~~~~i~~i~~~~~~~~l~~~~-~d~~ 146 (203)
. .......+ ..+.+..+++-...+.|+++|...+.. +... .. ..-.....+ +|++.+|+.+. ..+.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 0 11122333 334444444444578898888765421 1100 00 101123455 88887766555 5678
Q ss_pred EEEEeCCC
Q 028806 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|..|++..
T Consensus 191 I~~~~~~~ 198 (306)
T 2p4o_A 191 LLRIPVDS 198 (306)
T ss_dssp EEEEEBCT
T ss_pred EEEEEeCC
Confidence 99999874
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.20 E-value=6.9e-05 Score=60.46 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=82.9
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc-------------cce--------------------------EEEEEeeCC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~ 49 (203)
.++.++.+|.++++|..+++.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56778889999999999998876554211 111 235677877
Q ss_pred CEEEEec-------------------------------------CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeC
Q 028806 50 RKVVCGS-------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD 91 (203)
Q Consensus 50 ~~l~~~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~ 91 (203)
.+|++.. .++.|..||+.+. +.+-.+.. . ..+... +...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~-~-~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWE-K-FAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEEEEEEE-S-SCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEEEEecC-C-CCccceeEEEC
Confidence 7776643 2468888888753 44433432 2 222323 4455
Q ss_pred CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 92 EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 92 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+..+++++.++.|+.+|..+|+.+..+.......-..+.+..+|+.++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 677888999999999999999999888655321112244556776444
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0011 Score=51.03 Aligned_cols=151 Identities=10% Similarity=-0.048 Sum_probs=90.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|++....|+.+ ...+.|+.+++... .....+.........+++.+.+ +++++-...+.|.+.++.. ....
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~ 194 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 194 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEE
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC--CceE
Confidence 3566655544433 44577777777542 1222233234457789998744 4445555678899888862 3333
Q ss_pred e-eeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 75 R-FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~-~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
. +.. .......+ +.|.+.+|+.... .+.|...++........+..... ....|+++|++..|+.+. ..+.|..
T Consensus 195 ~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 195 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 3 332 33446777 7887777766553 36788888764333322332212 578999999887777665 5678999
Q ss_pred EeCCCc
Q 028806 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
+|+...
T Consensus 273 ~d~dG~ 278 (400)
T 3p5b_L 273 IDVNGG 278 (400)
T ss_dssp EETTSC
T ss_pred EeCCCC
Confidence 988654
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.16 E-value=0.00046 Score=52.89 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=91.2
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceee-e
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRF-V 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~-~ 77 (203)
|+|++.++.|+ +-...+.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.. .....+ .
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~ 198 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 198 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec
Confidence 35666555444 44456788888887654433333333345678888755554 4445567888888752 332333 2
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ +.|.+..|+.+.. . +.|..+++............ ......|+|+|++..|+.+. ..+.|..+++.
T Consensus 199 ~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 199 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp S-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred C-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 33456777 7887777666554 3 67888887643332222222 22468899998777666555 56789999886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 277 G~ 278 (386)
T 3v65_B 277 GS 278 (386)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.16 E-value=0.00024 Score=59.21 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=80.6
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCe--EEEeec-CCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNT--VQTRSE-FSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~vw~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~ 69 (203)
++|+|||+.|+....+ ..|+++++.++. ....+. ........+.|+||+++|+..+. ...|+++|+...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4799999988777654 368888887653 112222 22234668899999998876552 346888888643
Q ss_pred cccc--eeeeccCCCceeEE-EeeCCCEEEEEcC-C----CcEEEEEccCC-ceee-eeccCCCCceEEEEEeCCCCeE-
Q 028806 70 KDCS--DRFVGLSPNSVDAL-LKLDEDRVITGSE-N----GLISLVGILPN-RIIQ-PIAEHSEYPIESLALSHDRKFL- 138 (203)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d----~~i~~~d~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l- 138 (203)
.... ..+........+.+ |+ .|..|+..+. + ..|..+++.++ .... .+.......+..+.+ .+..|
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv 382 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLV 382 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEE
T ss_pred CCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEE
Confidence 1122 33332023333433 23 3666555443 2 25666776542 2222 232222213444444 44454
Q ss_pred EEEeCCCc--EEEEeC
Q 028806 139 GSISHDSM--LKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~--i~iwd~ 152 (203)
++...++. |.++++
T Consensus 383 ~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEeCCEEEEEEEec
Confidence 45556665 555664
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.12 E-value=0.00017 Score=58.31 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCccccceeeeccCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.|..||+.+. +.+-.... .. +... .....+.+++.++.|+.|+.||.++|+.+..++......-.-+.|..+|+
T Consensus 465 ~G~l~A~D~~tG-~~~W~~~~-~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSG-KVVWEHKE-HL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTC-CEEEEEEE-SS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCC-CEEEEecC-CC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 577888888754 33333332 22 2222 23445778888999999999999999999888765331112366777886
Q ss_pred -eEEEEe
Q 028806 137 -FLGSIS 142 (203)
Q Consensus 137 -~l~~~~ 142 (203)
|+++.+
T Consensus 542 qYv~~~~ 548 (582)
T 1flg_A 542 QYLGVTV 548 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 454433
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.11 E-value=0.00074 Score=48.68 Aligned_cols=150 Identities=9% Similarity=0.120 Sum_probs=90.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeec------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--F 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~ 69 (203)
|++.+++.++++.-.++.+.++.+.... .+.... ........|+|+|.+..|+++.......+|.+.. .
T Consensus 75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 3566777776766667889998876432 122221 1234568999999998888777655555555531 1
Q ss_pred cccceeee------ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------CceEEEEEeC
Q 028806 70 KDCSDRFV------GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 70 ~~~~~~~~------~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------~~i~~i~~~~ 133 (203)
...+..+. ......+..+ ++|. +++++.+.....|.++|.. |+.+..+....+ ..-..|+|.+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 11122221 0022346777 7875 4555566667788889865 555555433311 1457899999
Q ss_pred CCCeEEEEeCCCcEEEEeC
Q 028806 134 DRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~ 152 (203)
+|+.. ..+.-+.+++|.-
T Consensus 234 ~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 234 SGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp TCCEE-EEETTTEEEEEEC
T ss_pred CCCEE-EEcCCceEEEEEe
Confidence 99844 4466666776643
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.09 E-value=0.00019 Score=57.99 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... ++..-.....+..++.++.|+.|+.||.++++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 5789999999999887765442 2222222234667888999999999999988765
No 269
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.05 E-value=0.0018 Score=48.76 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=92.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC----CC---EEEEecC---CCeEEEEEcCCcccccee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN----GR---KVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
...+++.....+.|.+||+ +++.++.+.. ++++.+..-|+ ++ +++++.. +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666677789999999 7888887754 56777777663 22 2333333 578999988422223333
Q ss_pred eec------cCCCceeEE--E-eeC-CC-EEEEEcCCCcEEEEEcc-------CCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 76 FVG------LSPNSVDAL--L-KLD-ED-RVITGSENGLISLVGIL-------PNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 76 ~~~------~~~~~v~~~--~-~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+.. .....+..+ + +|. +. ++++...+|.+..|.+. +++.+.++.... .+..+...+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 311 011233434 3 564 44 57777788999999883 335566666653 5888999998899
Q ss_pred EEEEeCCCcEEEEeCC
Q 028806 138 LGSISHDSMLKLWDLD 153 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~ 153 (203)
|+.+-.+..|..++.+
T Consensus 194 Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEETTTEEEEEECS
T ss_pred EEEecccceEEEEeCC
Confidence 9999988777666644
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.02 E-value=0.00048 Score=55.84 Aligned_cols=56 Identities=14% Similarity=-0.051 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... ++..-.+...+..++.++.|+.|+.||.++++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 4678999999999887765331 2222122335667778899999999999988754
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.02 E-value=0.00024 Score=58.41 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=95.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc----cceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcccccee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~ 75 (203)
.+..|+.++.++.|..+|..+|+.+....... ..+.+.-.-.++ .++++.. ++.|+.+|..+. +.+-.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W~ 193 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTG-KLAWR 193 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTC-CEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCC-cEEEE
Confidence 35678888889999999999999887765421 111110011133 4555443 588999998754 43333
Q ss_pred eecc--CC---------------------------Cce-eEE-EeeCCCEEEEEcCCC-------------------cEE
Q 028806 76 FVGL--SP---------------------------NSV-DAL-LKLDEDRVITGSENG-------------------LIS 105 (203)
Q Consensus 76 ~~~~--~~---------------------------~~v-~~~-~~~~~~~l~~~~~d~-------------------~i~ 105 (203)
+... .. ..+ ..+ +.|....++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 3210 00 011 123 677788888887765 389
Q ss_pred EEEccCCceeeeeccCC-C-------CceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 106 LVGILPNRIIQPIAEHS-E-------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~-------~~i~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+|+.+|+.+..++... . .+.....+..+|+ .|+.++.+|.++++|..+++..
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 99999999987775421 1 1233333344665 6888889999999999988754
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0017 Score=49.76 Aligned_cols=151 Identities=11% Similarity=-0.037 Sum_probs=87.2
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 445443333 44444567777776644332233333356789999987766665543 3 678888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+. ..+.|..+++........+..... ....|++ ..+..+++....+.|..++..++.
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 033345677 888777776665 467799999764333333332222 4577887 344455555567788888855543
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.00 E-value=0.0024 Score=48.18 Aligned_cols=151 Identities=9% Similarity=-0.063 Sum_probs=87.5
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CC-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QS-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.+.++........+...-.....+++.|.+..|+.+. .. +.|..+++.. .....+..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~ 199 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--SGRRIIAD 199 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CSCEESCC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC--CCcEEEEE
Confidence 4555443 334445567888888765433333333335578999999666555544 34 7788888752 33333321
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+.. .+.|..+++........+..... ....+++ ..+..+++-...+.|..++..++.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 023445677 8987777776654 67799999764333322322222 4567777 344444555567788888754443
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.99 E-value=0.00098 Score=54.08 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCccccceeeeccCCCcee-EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.|..||+.+. +.+-.... ..+.. ......+.+++.++.++.|+.||.++|+.+..++........-+.+..+|+
T Consensus 452 ~G~l~A~D~~tG-~~~W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAITG-DYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTTTC-CEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECCCC-CEEeEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 367777887653 33322222 11222 213446778888999999999999999999888655332222355666775
Q ss_pred -eEEEE
Q 028806 137 -FLGSI 141 (203)
Q Consensus 137 -~l~~~ 141 (203)
|+++.
T Consensus 529 qyv~~~ 534 (599)
T 1w6s_A 529 QYVAIY 534 (599)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 45443
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.0027 Score=47.26 Aligned_cols=148 Identities=10% Similarity=-0.037 Sum_probs=86.7
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|++.++.| .+-...+.|..+++..+.. ...+...-.....+++.+.+. ++++-...+.|.++++.. .....+.
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 118 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 118 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEe
Confidence 456544443 3334456777777665421 111111123456788887544 445555678899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. .......+ +.|.+..|+.+.. .+.|...++.. .....+ ...-. ....++++|++..|+.+. ..+.|..+++
T Consensus 119 ~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~-~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 119 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIY-WPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp S-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred C-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCC-CccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 3 34456777 7887777666653 57788888753 333222 22212 468899999777766655 5678999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
..
T Consensus 196 dG 197 (318)
T 3sov_A 196 DG 197 (318)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.88 E-value=0.0031 Score=49.05 Aligned_cols=150 Identities=7% Similarity=-0.014 Sum_probs=87.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-c-CCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcccc---c
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-E-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDC---S 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~---~ 73 (203)
++++| ++.++++-..++.|+.++..++.....+ . ........++|+|+++.|+.+ ...+.|+.+++...... .
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 46778 6666666667788999998866552222 1 112233579999999855554 45788999886521111 1
Q ss_pred eeeeccC---------------CCceeEE-E---------eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------
Q 028806 74 DRFVGLS---------------PNSVDAL-L---------KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------ 122 (203)
Q Consensus 74 ~~~~~~~---------------~~~v~~~-~---------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------ 122 (203)
..+.+ . -.....+ + .+++.++++-...+.|+.++. +|... ++.+..
T Consensus 313 ~~~ag-~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G 389 (433)
T 4hw6_A 313 YIVCG-QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWG 389 (433)
T ss_dssp EEEEE-CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSC
T ss_pred EEEEe-cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccc
Confidence 12221 1 1123445 5 455666666566778888884 45333 221110
Q ss_pred -----------CCceEEEEEe-CCCCeEEEEeCCCcEEEEeCC
Q 028806 123 -----------EYPIESLALS-HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 -----------~~~i~~i~~~-~~~~~l~~~~~d~~i~iwd~~ 153 (203)
-.....|+++ +++.++++-.....|+.++++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0136789999 566665555567788888764
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.87 E-value=0.0032 Score=46.37 Aligned_cols=132 Identities=8% Similarity=0.010 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE-EEee---------cCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--c
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRS---------EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC--S 73 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~-~~~~---------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~--~ 73 (203)
+..+++-...+.|++++..++.. +... ...-.....+ +|++..|+++. ..+.|.+|++...+.. .
T Consensus 128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205 (306)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence 33344444578888888776532 2110 0111234555 78887665554 5789999998632221 1
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEe---CCCCeEEEEeCC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALS---HDRKFLGSISHD 144 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~---~~~~~l~~~~~d 144 (203)
..+.. ......+ +.++|+++++....+.|.+++.. ++... .+..... ...+++|. |++..|+.++..
T Consensus 206 ~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 206 EIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEEECCC
Confidence 22221 1234556 78899877666667889999975 65532 3333222 57899998 888777766543
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.0048 Score=51.72 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=88.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+|++....| ++-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.++.. .....
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~ 507 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKT 507 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEE
Confidence 455533333 33344566777776542 11222332334566889987775555 445578999999862 33333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
+..........| +.|...+|+.... .+.|.+.++........+... ......|++++.+..|+.+. ....|..++
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 332034456778 7887777766653 267888887644333333332 22578999998777776665 456788888
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 587 ~dG~ 590 (791)
T 3m0c_C 587 VNGG 590 (791)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 7654
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.84 E-value=0.0045 Score=46.08 Aligned_cols=152 Identities=7% Similarity=-0.093 Sum_probs=88.6
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.++++........+.........+++.|.+..|+.+. ..+.|..+++. +.....+..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 3444333 334444557788888765432222323345678999998766666555 25788888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..-.....+ ++|++..|+.+. ..+.|..+++........+..... ....+++.. +..+++-...+.|..++..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 023445677 898777777665 467899999864332222222222 456777753 3444455567889999886665
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 241 ~ 241 (318)
T 3sov_A 241 G 241 (318)
T ss_dssp S
T ss_pred c
Confidence 4
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=0.0029 Score=49.96 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=88.3
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcC-------CCeE-----------EEe-ec-CCccceEEEEEeeCCCEEEEe-cCCC
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLR-------KNTV-----------QTR-SE-FSEEELTSVVLMKNGRKVVCG-SQSG 59 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~d~ 59 (203)
+++|+ +.++++-..++.|..+++. ++.. ... +. ........|+|+|+++.|+.+ ...+
T Consensus 253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h 332 (496)
T 3kya_A 253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH 332 (496)
T ss_dssp EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC
Confidence 56774 4555566677889999987 4432 111 11 223456799999999965544 4577
Q ss_pred eEEEEEcCCccccc---eeeeccC---------------CCcee-EEE-e-------eCCCEEEEEcCCCcEEEEEccCC
Q 028806 60 TVLLYSWGYFKDCS---DRFVGLS---------------PNSVD-ALL-K-------LDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 60 ~i~~wd~~~~~~~~---~~~~~~~---------------~~~v~-~~~-~-------~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
.|+.++.......+ ..+.+ . -.... .++ . +.+.++++-...+.|+.++ .+|
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG-~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G 410 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVG-GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG 410 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEE-BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred EEEEEecCCCcceecccEEecC-CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence 88887764211111 12222 1 01123 333 3 4455566656678899998 445
Q ss_pred ceeeeeccC--------------CC---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccC
Q 028806 113 RIIQPIAEH--------------SE---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 113 ~~~~~~~~~--------------~~---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.. .++.+. .+ .....|+++++ +.++++-.....|+.+++.....-
T Consensus 411 ~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 411 IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 33 233211 00 13678999996 666666557788999988654443
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.76 E-value=0.006 Score=45.24 Aligned_cols=152 Identities=11% Similarity=-0.089 Sum_probs=88.6
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~ 160 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEE
Confidence 455444433 44455678888887754333333323356789999987666655543 2 678888875 333333321
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........+ ++|++..|+.+.. .+.|..+++............ .......+++. .+..+++-...+.|..++..++
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 023445677 8888777776654 578999998643222222211 11135677775 3444555556778999887655
Q ss_pred c
Q 028806 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 240 ~ 240 (316)
T 1ijq_A 240 S 240 (316)
T ss_dssp C
T ss_pred c
Confidence 4
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.73 E-value=0.0085 Score=46.07 Aligned_cols=153 Identities=11% Similarity=-0.100 Sum_probs=88.5
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+. ++++++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...++. +.....+..
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~ 242 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 242 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEEC
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEE
Confidence 34443 333344445677888777655443333333445789999997666665542 4678888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........| +++++..|+.+.. .+.|..+++........+... .......+++. .+..+++-...+.|..++..++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 033456777 8888877777654 578999998644332222221 11134567763 3344455556778888886655
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 322 ~~ 323 (400)
T 3p5b_L 322 SD 323 (400)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.0081 Score=46.67 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCc-ccc--ce
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC--SD 74 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~-~~~--~~ 74 (203)
++++| ++.++++-...+.|..++..++....... ........++|+|++++|+. -...+.|..++.... +.. ..
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 35778 66666666677899999988765422222 12245778999999995554 456788999887521 111 11
Q ss_pred eeeccC---------------CCcee-EEE-e--------eCCCEEEEEcCCCcEEEEEccCCceeeeecc----CC---
Q 028806 75 RFVGLS---------------PNSVD-ALL-K--------LDEDRVITGSENGLISLVGILPNRIIQPIAE----HS--- 122 (203)
Q Consensus 75 ~~~~~~---------------~~~v~-~~~-~--------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~--- 122 (203)
.+.+ . -.... .++ . +++.++++-...+.|+.++. .|......-. ..
T Consensus 311 ~~ag-~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 311 IVCG-QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEE-CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCB
T ss_pred EEec-cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCccc
Confidence 2221 1 01112 332 2 23444445455677888873 4543322211 00
Q ss_pred C---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCC
Q 028806 123 E---------YPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 ~---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (203)
. .....++++|+ +.++++-.....|+.++++
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 14678999995 5555555566778887753
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.64 E-value=0.00023 Score=58.79 Aligned_cols=151 Identities=9% Similarity=-0.074 Sum_probs=84.4
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|++.+..|+.+ ...+.|+.+++.+ ......+.........|++.+.+. ++++-...+.|.++++.. ....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--CceE
Confidence 4677766666554 3457888888765 222122221122345678775444 444444567899998753 3333
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iw 150 (203)
.+..........+ +.|.+.+|+.+.. .+.|.++++... ....+..........|+|+|++..|+.+. ..+.|.++
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence 3322022345566 6887666665543 267887776532 22222111112456799999876665554 56789999
Q ss_pred eCCC
Q 028806 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
++..
T Consensus 568 d~dG 571 (699)
T 1n7d_A 568 DVNG 571 (699)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9865
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.61 E-value=0.011 Score=44.56 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCeEEEEEcC--CCeEEEeecC------Cc-cceEEEEE--eeC-CC-EEEEecCCCeEEEEEcCC------ccccceee
Q 028806 16 DGTLSVCNLR--KNTVQTRSEF------SE-EELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGY------FKDCSDRF 76 (203)
Q Consensus 16 d~~i~vw~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~~------~~~~~~~~ 76 (203)
+++|.+|++. ++. +..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.. ..+.++.|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 443 444421 11 45666777 564 43 677888899999999842 22445666
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----CCceeeeec-cCCCCceEEEEE--eCCCC-eEEEEe-CCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----PNRIIQPIA-EHSEYPIESLAL--SHDRK-FLGSIS-HDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~-~~~~~~i~~i~~--~~~~~-~l~~~~-~d~ 145 (203)
.. . ..+..+ ..+....|+.+-.+.-|..|+.+ +++.+..+. .+....+..|++ .++++ ||++++ .+.
T Consensus 177 ~l-g-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 177 KM-N-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EC-S-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred cC-C-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 64 3 345555 78888999999998777777755 234554442 222235788887 45566 677666 677
Q ss_pred cEEEEeCC
Q 028806 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
++.+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999996
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.58 E-value=0.022 Score=47.78 Aligned_cols=151 Identities=11% Similarity=-0.111 Sum_probs=87.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.++.| ++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|.+.++. +.....+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv~ 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEEe
Confidence 455555444 44455678888888765443333333455789999997666665543 3678888875 333333332
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
........| +.+.+..|+.+.. .+.|..+++........+.... -.....|++. +.+|+.+. ..+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 033456777 7877777776654 5678888886443333332211 1134566663 33454444 567788777655
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 633 G~ 634 (791)
T 3m0c_C 633 GS 634 (791)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 287
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.54 E-value=0.016 Score=44.74 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCeEEEeecCC----ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---c------cc--eeeec---
Q 028806 17 GTLSVCNLRKNTVQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---D------CS--DRFVG--- 78 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~------~~--~~~~~--- 78 (203)
+.||.-++......+.+... -..|..+..+|+|.+|+..+. ..|.|-.+.... . .+ ..+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 56666666533222233222 235788999999999998865 578888886211 0 01 11211
Q ss_pred --cCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCc--eeeeeccCC--------CCceEEEEEeCCCCeEEEEe
Q 028806 79 --LSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNR--IIQPIAEHS--------EYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 79 --~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~ 142 (203)
....+|..+ |+| .+..|++-..|+.|++||+.... +. .+.... ...|.+++|.+++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 013557777 988 45689999999999999997522 22 222110 12588999999887777755
Q ss_pred --CCCcEEEEe
Q 028806 143 --HDSMLKLWD 151 (203)
Q Consensus 143 --~d~~i~iwd 151 (203)
..|.|+-.-
T Consensus 199 ~t~~GDIYAlc 209 (452)
T 3pbp_A 199 TTEGGDIFAFY 209 (452)
T ss_dssp CTTSCEEEEES
T ss_pred cCCCCCEEEEC
Confidence 778776654
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.45 E-value=0.0037 Score=51.23 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred ccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccc-eEEEEEeeCCCEEEEec-CC-----CeEEEEEcCC
Q 028806 3 FAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGS-QS-----GTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----~~i~~wd~~~ 68 (203)
+.+++++++.|+. +..+.+||..++.-...-.-+..+ -.+++..++++.++.|+ .+ ..+.+||..+
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 4578888888874 458999999876543322111121 23445567899999888 34 5688998853
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.42 E-value=0.0037 Score=47.21 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=54.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeec---CCccceEEEEEeeC---CCEEEEecC-C-----CeEEEEEc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE---FSEEELTSVVLMKN---GRKVVCGSQ-S-----GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~~wd~ 66 (203)
|+|.|+|+++++ ...+.|++++ .+.. +..+. ........|+++|+ +..|+++.. . +.|..|+.
T Consensus 36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 578999986555 4569999998 4432 22221 22356889999998 555554433 2 57888877
Q ss_pred CCcc-----ccceeee--ccCCCceeEE-EeeCCCEEEEE
Q 028806 67 GYFK-----DCSDRFV--GLSPNSVDAL-LKLDEDRVITG 98 (203)
Q Consensus 67 ~~~~-----~~~~~~~--~~~~~~v~~~-~~~~~~~l~~~ 98 (203)
.... ..+..+. .........+ |.|+|.+.++.
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 5210 1111122 1011223566 89999766654
No 290
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.40 E-value=0.013 Score=44.25 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=76.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEee----cCCccceEEEEEeeC---CCEEEEe---cCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS----EFSEEELTSVVLMKN---GRKVVCG---SQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~~wd~~~ 68 (203)
|+|.|+|.++++--..|.|++++..++.. +..+ .........|+++|+ +..|+.. ..++.|.-|.+..
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 57899999777765589999998665543 2222 123456899999985 3444432 2345666666642
Q ss_pred cc-------ccceeeec---cCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC----c---eeee
Q 028806 69 FK-------DCSDRFVG---LSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN----R---IIQP 117 (203)
Q Consensus 69 ~~-------~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~----~---~~~~ 117 (203)
.. .....+.. ........| |.|+|.+.++.+. .|.|.-++.... . ....
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i 196 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPV 196 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCE
T ss_pred CCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeE
Confidence 10 11111111 012234456 8999987776432 355555554321 0 0111
Q ss_pred e-ccCCCCceEEEEEeCCCCeEEEE
Q 028806 118 I-AEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 118 ~-~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+ .++ . ....++|+|++.+.++-
T Consensus 197 ~a~G~-R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 197 YSYGH-R-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp EEBCC-S-BCCEEEECTTCCEEEEE
T ss_pred EeeCC-C-CcceEEECCCCCEEEEe
Confidence 2 233 2 45789999987765543
No 291
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.39 E-value=0.022 Score=42.07 Aligned_cols=139 Identities=6% Similarity=-0.059 Sum_probs=82.8
Q ss_pred ccccCCEEEEEcCC--------------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEc
Q 028806 3 FAADAMKLLGTSGD--------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~ 66 (203)
+++++.+|+.+... ..|+..++..++....... . ...|++++..|+... .++.-.||-+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 57788888776542 4677777776543222221 1 236788888888765 3444445544
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
...+...+.+.. +.. . ++|+++.|+..+. ...|.+.++..+.....+.. ... ..+.|++.+|+.....
T Consensus 135 ~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 135 RIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEEEEETTEEEEEEGG
T ss_pred ECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcC
Confidence 433444555554 322 3 6888988887665 56788888766554433322 222 3466888888866543
Q ss_pred --CcEEEEeCCCcc
Q 028806 145 --SMLKLWDLDDIL 156 (203)
Q Consensus 145 --~~i~iwd~~~~~ 156 (203)
..|..-++.+..
T Consensus 205 ~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 205 RDNAIVHVNINNPN 218 (302)
T ss_dssp GTTEEEEECSSSCC
T ss_pred CCcEEEEEECCCCC
Confidence 356666665543
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.38 E-value=0.0011 Score=54.71 Aligned_cols=153 Identities=12% Similarity=-0.102 Sum_probs=84.2
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+.. .+.|.++++.. .....+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~ 536 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVT 536 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEESC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEe
Confidence 4444333 3344345678888888765443333333345677899986655555443 26787777652 22222221
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........| ++|++..|+.+. ..+.|.++++........+... .......|++..+ .++++....+.|..++..++
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 022345567 888766665554 5678999998643322222211 0112345566544 34445556678999987665
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 616 ~~ 617 (699)
T 1n7d_A 616 SD 617 (699)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 293
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.37 E-value=0.005 Score=43.24 Aligned_cols=148 Identities=7% Similarity=-0.108 Sum_probs=79.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE------EEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV------QTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~- 72 (203)
|+|+|+|.+.++ .+|.++-.+..+... ...+ ...-.....+.|.|++.+.++ .||.|+-++-.+.+..
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~ 121 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN 121 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc
Confidence 578998886666 667777766544110 0111 111112467889999988777 5698888875332211
Q ss_pred c---eeeec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-----eeeeccCCCC-ceEEEEEeCCCCeEEEE
Q 028806 73 S---DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-----IQPIAEHSEY-PIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~---~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~-~i~~i~~~~~~~~l~~~ 141 (203)
+ ....+ ..-..+..| +.|+|.+.+.. ++.++-....++.. ..+...+... .-..+.|.+++...++.
T Consensus 122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 1 01111 012456777 78999877776 77654332221110 1111111111 33456789998877766
Q ss_pred eCCCcEEEEeCCCcccC
Q 028806 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
++ ++|.....++.
T Consensus 200 --~g--~~Y~~~~p~~~ 212 (236)
T 1tl2_A 200 --GG--KFYEDYPPSYA 212 (236)
T ss_dssp --TT--EEEEESCCCST
T ss_pred --CC--eEEecCCcccc
Confidence 66 45555444433
No 294
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.37 E-value=0.027 Score=42.60 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=85.4
Q ss_pred cccccCCEEEEE------------cCCCeEEEEEcCC--CeEE-EeecC-----CccceEEEEEee--CCC-EEEEec-C
Q 028806 2 TFAADAMKLLGT------------SGDGTLSVCNLRK--NTVQ-TRSEF-----SEEELTSVVLMK--NGR-KVVCGS-Q 57 (203)
Q Consensus 2 ~~sp~~~~l~~~------------~~d~~i~vw~~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~~~~-~ 57 (203)
+..|+|..++++ ..+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|+++. .
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~ 135 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 135 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence 356776555554 2689999999873 2221 12222 234677888776 353 344432 2
Q ss_pred --CCeEEEEEcCCccccce---eeeccCCCceeEE-EeeCCCEEEEEcC-----------------CCcEEEEEccCCce
Q 028806 58 --SGTVLLYSWGYFKDCSD---RFVGLSPNSVDAL-LKLDEDRVITGSE-----------------NGLISLVGILPNRI 114 (203)
Q Consensus 58 --d~~i~~wd~~~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~~-----------------d~~i~~~d~~~~~~ 114 (203)
+.++.+|++...+.... .+.+..-.....+ +.++|.+.++... .|.|..++. ++.
T Consensus 136 ~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 136 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 56888888864333222 2222112345667 7888887666431 244544543 433
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
......- . ..+.++|+||+++|+.+. ..+.|..|++.
T Consensus 214 ~~~~~~l-~-~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 214 RVVAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEeecCC-c-ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 3222222 2 468899999998877665 56889999986
No 295
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.35 E-value=0.045 Score=45.82 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=87.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|+ |-.|+.++-|..|+..++........ ....|.++...++++.|..|+.++-|.+|+..+ +. ...+.
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~ 443 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFN 443 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEEC
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEee
Confidence 444 44456666788888877654332211 135688998888888566677767799999764 22 22222
Q ss_pred c----cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc-----CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 78 G----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 78 ~----~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
. .....|.++ ..++|.+.+. +..| |.+|+..+++....... .....|.++...++|+..+.. . +-|
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl 519 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGL 519 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCE
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-Cce
Confidence 1 023467777 5667765544 4444 88899877654332211 112368999998888765544 3 558
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
..|+..+..
T Consensus 520 ~~~~~~~~~ 528 (795)
T 4a2l_A 520 SVFKQEGLD 528 (795)
T ss_dssp EEEEEETTE
T ss_pred EEEeCCCCe
Confidence 888876543
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.34 E-value=0.045 Score=44.62 Aligned_cols=151 Identities=11% Similarity=-0.003 Sum_probs=88.6
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|++.+..|+.+ ...+.|..+++..... ...+...-.....+++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~ 123 (619)
T 3s94_A 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 123 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEe
Confidence 566655555443 3456777777765421 222333335678999998655554 445678999999863 3333333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .-.....+ +.|.+.+|+.... .+.|...++. |.....+..........+++++++..|+.+. ..+.|..+++.
T Consensus 124 ~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 124 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp S-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred C-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 3 34456677 7887666666653 3567666665 3333233211122578999999777666555 56789999887
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
...
T Consensus 202 G~~ 204 (619)
T 3s94_A 202 GTN 204 (619)
T ss_dssp CCE
T ss_pred CCc
Confidence 643
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.29 E-value=0.052 Score=44.32 Aligned_cols=150 Identities=10% Similarity=0.072 Sum_probs=91.6
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
|+|++.+..|+ +-..++.|+.+++........+.........|++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~ 119 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVW 119 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEe
Confidence 35666555544 444567788888765433333332224567888887655554 444578899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .-.....+ +.|....|+.... .+.|...++.......... ... ....+++++++..|+.+. ..+.|..+++.
T Consensus 120 ~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 120 K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVG-RANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCS-SEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCC-CcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3 34456777 7886666666653 4677777765433332232 223 578999999877776665 56788888886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 197 G~ 198 (628)
T 4a0p_A 197 GL 198 (628)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.28 E-value=0.022 Score=42.56 Aligned_cols=146 Identities=7% Similarity=-0.000 Sum_probs=88.6
Q ss_pred cccCCEEEEEc-------------CCCeEEEEEcC---CCeEEEeec--C-----------CccceEEEEEeeCCCEEEE
Q 028806 4 AADAMKLLGTS-------------GDGTLSVCNLR---KNTVQTRSE--F-----------SEEELTSVVLMKNGRKVVC 54 (203)
Q Consensus 4 sp~~~~l~~~~-------------~d~~i~vw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~ 54 (203)
.|+++++++.. .+..|..+|+. +++.+.... . .......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 57777766543 25779999998 676544332 1 1134789999999999998
Q ss_pred ecCC-CeEEEEEcCCccccceeeecc-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeeec--cC--
Q 028806 55 GSQS-GTVLLYSWGYFKDCSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIA--EH-- 121 (203)
Q Consensus 55 ~~~d-~~i~~wd~~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~--~~-- 121 (203)
++.. +.|..++.. +..+..+... .......+ ++|+|..|++....|.|..+|+..... +. .. +.
T Consensus 154 ~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~ 230 (334)
T 2p9w_A 154 FALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFG 230 (334)
T ss_dssp EEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCC
T ss_pred CCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcc
Confidence 8887 777766654 3333333210 11225567 899999999887799999999874322 11 11 11
Q ss_pred CCCceEEE-EEeCCCCe-EEEEeCCCcEEEEeC
Q 028806 122 SEYPIESL-ALSHDRKF-LGSISHDSMLKLWDL 152 (203)
Q Consensus 122 ~~~~i~~i-~~~~~~~~-l~~~~~d~~i~iwd~ 152 (203)
.......| ....+|+. |++....+.+.+.+.
T Consensus 231 ~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 231 TLSGTEKIVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEETTEEEEEECS
T ss_pred cccCcccccccccCCEEEEEEcCCCCEEEEECC
Confidence 01123333 33347777 445555666666554
No 299
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.26 E-value=0.061 Score=45.01 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=85.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeec----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
++++.|..|+.++.|.+|+..+++...... .....|.++...+++.+.+.+. . -+.+|+..+ + ....+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~-~-~~~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ-R-SFTTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT-T-EEEECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC-C-eEEEccccc
Confidence 455536666666779999988776543221 1245688898888887655543 4 488888753 2 2222221
Q ss_pred ----cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc------CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 79 ----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 79 ----~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.....+.++ ..++|.+.+.. .. -|..|+..++.. .+.. .....|.++...++|++.+. +.. -|
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl 564 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GF 564 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CE
T ss_pred cccccCCceEEEEEECCCCCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-Cc
Confidence 012457777 56777655544 44 488899877654 2221 11126889998888875543 333 57
Q ss_pred EEEeCCCc
Q 028806 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
..||..+.
T Consensus 565 ~~~d~~~~ 572 (795)
T 4a2l_A 565 YCFNEKDK 572 (795)
T ss_dssp EEEETTTT
T ss_pred eeECCCCC
Confidence 88887654
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.26 E-value=0.014 Score=44.08 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=73.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-EEEeec---CCccceEEEEEeeC---CCEEEEecC----C----CeEEEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSE---FSEEELTSVVLMKN---GRKVVCGSQ----S----GTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~~wd 65 (203)
|+|.|+|+++++ ...+.|++++ .++. .+..+. ........|+++|+ +..|+++.. + ..|..|+
T Consensus 34 ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 34 IAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 578899985555 4559999997 4454 222221 22356889999997 455554432 2 5677777
Q ss_pred cCCcc------c-cceeeeccCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC---------cee
Q 028806 66 WGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN---------RII 115 (203)
Q Consensus 66 ~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~---------~~~ 115 (203)
..... + .+..+..........+ |.|+|.++++.+. .|.|..++.... ..+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i 191 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI 191 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence 65321 0 1111221011233556 8999986666432 245655554321 011
Q ss_pred eeeccCCCCceEEEEEeC-CCCeEEEE
Q 028806 116 QPIAEHSEYPIESLALSH-DRKFLGSI 141 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~-~~~~l~~~ 141 (203)
.. .++ . ....++|+| +++.+++-
T Consensus 192 ~a-~G~-r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 192 WS-YGH-R-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp EE-ECC-S-CCCEEEECTTTCCEEEEE
T ss_pred EE-Ecc-C-CcceEEEeCCCCCEEEEe
Confidence 11 223 2 356899999 56655443
No 301
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.22 E-value=0.02 Score=44.85 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=55.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecC------CccceEEEEEeeC---CCEEEEecC------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEF------SEEELTSVVLMKN---GRKVVCGSQ------------ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------------ 57 (203)
|+|.|+|+++++-...+.|++++..++.. +..+.. ....+..|+|+|+ +..|+++..
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~ 111 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP 111 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence 57889999777765445788887655533 222321 2456789999995 555544332
Q ss_pred -CCeEEEEEcCCcc------c-cceeeeccCCCceeEE-EeeCCCEEEEEc
Q 028806 58 -SGTVLLYSWGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 58 -d~~i~~wd~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
...|..|++.... + .+..+..........+ |.|+|.+.++.+
T Consensus 112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666653211 1 1111111012345667 899998777644
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.22 E-value=0.037 Score=41.17 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=79.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++.|++.+++++...+.++-.|- .+.+.+. ......+..+.+.+++..++. +.+|.+++.... .+.....+...
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D-~G~tW~~~~~~ 244 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPD-NSENWGELLSP 244 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETT-EEEEECCCBCT
T ss_pred EEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCC-CCCeeEeccCC
Confidence 45677777766654333333342 2333332 233456888999888876654 456877776422 12333322210
Q ss_pred ---CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC--CCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 80 ---SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH--SEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ---~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
....+..+ +.+++..++++. ++.| ++....|+.-..+... ....+.++.|.++++ +++++.+|.|.-++-
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 12346677 677776666554 5666 3444445444333321 012578888876554 566667888777653
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.10 E-value=0.0044 Score=47.83 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=69.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe------------EEEeecC------CccceEEEEEeeC---CCEEEEecCCCe
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT------------VQTRSEF------SEEELTSVVLMKN---GRKVVCGSQSGT 60 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~ 60 (203)
..||+|.+||..+. ..|.|..+..+. ....+.- ...+|..+.|||- +..|++-..|+.
T Consensus 72 vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 72 ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 46899999998865 689999887321 0111211 2467999999994 468899899999
Q ss_pred EEEEEcCCcc-ccceeeec--------cCCCceeEE-EeeCCCEEEEEc--CCCcEEEE
Q 028806 61 VLLYSWGYFK-DCSDRFVG--------LSPNSVDAL-LKLDEDRVITGS--ENGLISLV 107 (203)
Q Consensus 61 i~~wd~~~~~-~~~~~~~~--------~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~ 107 (203)
|++||+.... .+. .+.. .....+.++ |..++-.|+..+ ..|.|+-.
T Consensus 151 Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 151 ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999997421 111 2221 012456676 877777777755 77887654
No 304
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.09 E-value=0.012 Score=48.28 Aligned_cols=115 Identities=11% Similarity=-0.008 Sum_probs=69.7
Q ss_pred EEEEee-CCCEEEEecCCC-----------eEEEEEcCCcc-ccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEE
Q 028806 42 SVVLMK-NGRKVVCGSQSG-----------TVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISL 106 (203)
Q Consensus 42 ~~~~~~-~~~~l~~~~~d~-----------~i~~wd~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~ 106 (203)
.+++.+ +++.++.|+.+. .+.+||..+.. ..+..+...+.....++ +.+++.++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 788888876532 57888886422 11222221011122233 5788999999884 457999
Q ss_pred EEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CC-----CcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HD-----SMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~ 156 (203)
||+.+.+-...-..+....-.+++..++++.++.|+ .+ ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999876544322222121223556667999988888 34 468999987653
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.043 Score=40.01 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=74.2
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEE--EeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~ 73 (203)
++++++.|+.+ ..+.+||+.+.+-. ..+.........+ ..++..++.|+.+ ..+.+||+.+ ..+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLGGYDGLNILNSVEKYDPHT--GHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEECCCCCCcccceEEEEeCCC--CcE
Confidence 45556666543 36888998876432 2222222212222 2367777777654 4688888764 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 188 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 188 TNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGN 265 (301)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred EeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCC
Confidence 33322 1111 112233466777777653 468899998765432211111111112222 266677777654
Q ss_pred ---CcEEEEeCCCc
Q 028806 145 ---SMLKLWDLDDI 155 (203)
Q Consensus 145 ---~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 266 ~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 266 SLLSSIECYDPIID 279 (301)
T ss_dssp SBEEEEEEEETTTT
T ss_pred cccccEEEEcCCCC
Confidence 35778887654
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.99 E-value=0.11 Score=42.46 Aligned_cols=150 Identities=10% Similarity=-0.025 Sum_probs=88.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....|++.|....|+.+.. .+.|...++. +.....+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC
Confidence 444444434 44445677888887654322222233345789999986656665542 5677777775 333344433
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.......+ +++++..|+.+.. .+.|..+++..... ..+..... ....+++.. +..+++-...+.|...|..++.
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 44556677 8888777776654 57788999865433 23333222 356777765 3444444457888888876664
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 240 ~ 240 (628)
T 4a0p_A 240 N 240 (628)
T ss_dssp S
T ss_pred c
Confidence 3
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.96 E-value=0.062 Score=39.19 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=72.9
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-------CeEEEEEcCCccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFKD 71 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~ 71 (203)
++++++.|+.+ ..+.+||+.+..-... +........ ++ .-++..++.|+.+ ..+.+||+.+ .
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG-VG-VVGGLLYAVGGYDVASRQCLSTVECYNATT--N 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEECCEETTTTEECCCEEEEETTT--T
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCce-EE-EECCEEEEEeCCCCCCCccccEEEEEeCCC--C
Confidence 45566666544 3577888877654322 221111112 22 2356666666542 3588888763 2
Q ss_pred cceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 72 CSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.+..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.+
T Consensus 184 ~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 184 EWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDD 261 (302)
T ss_dssp EEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred cEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcC
Confidence 3333322 1111 112234467777777654 36889998876533221111110111222 2266777777754
Q ss_pred C-----cEEEEeCCCc
Q 028806 145 S-----MLKLWDLDDI 155 (203)
Q Consensus 145 ~-----~i~iwd~~~~ 155 (203)
+ .+.+||+.+.
T Consensus 262 ~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccccEEEEcCCCC
Confidence 3 4888888654
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.89 E-value=0.03 Score=42.25 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=70.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee-------cCCccceEEEEEeeC---CCEEEEec-C-------CCeE
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKN---GRKVVCGS-Q-------SGTV 61 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~~-~-------d~~i 61 (203)
|+|.|+|+ ++++ ...|.|++++.. +.....+ .........|+++|+ +..|+.+. . ...|
T Consensus 23 i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 23 LAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 57899998 5554 567999999853 3321111 112345789999995 44444432 2 2356
Q ss_pred EEEEcCCccc---ccee-eecc-----CCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCCc-----
Q 028806 62 LLYSWGYFKD---CSDR-FVGL-----SPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPNR----- 113 (203)
Q Consensus 62 ~~wd~~~~~~---~~~~-~~~~-----~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~~----- 113 (203)
..|++..... ..+. +... .......+ |.|+|.+.++.+. .|.|.-++....-
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 6666642111 1111 1110 11223456 8999965555432 2456666654210
Q ss_pred -------eeeee-ccCCCCceEEEEEeC-CCCeEEE
Q 028806 114 -------IIQPI-AEHSEYPIESLALSH-DRKFLGS 140 (203)
Q Consensus 114 -------~~~~~-~~~~~~~i~~i~~~~-~~~~l~~ 140 (203)
....+ .++ . ....++|+| ++++.++
T Consensus 181 f~~~~~~~~~i~a~G~-r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGI-R-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTTSTTSCTTEEEECC-S-EEEEEEEETTTTEEEEE
T ss_pred CcCCCCCCccEEEEcC-c-CccceEEECCCCCEEEE
Confidence 11112 122 2 478899999 5554443
No 309
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.15 Score=42.58 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=81.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC---
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS--- 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--- 80 (203)
++.+ ..|+..+.|..++..+++...... .....|.++...+++.+.+ ++. +-|.+|+... +. ...+....
T Consensus 417 ~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~-~~-~~~~~~~~~~~ 491 (781)
T 3v9f_A 417 EGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS-KK-VIHHYDTSNSQ 491 (781)
T ss_dssp TSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS-SS-CCEEECTTTSS
T ss_pred CCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC-Ce-EEecccCcccc
Confidence 4443 335555678888877765533221 1345688888777776544 444 5588888763 22 22222101
Q ss_pred --CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 --PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 --~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.++ ..++|.+.+ |+..+-|..|+..+++.. .+.. .....|.++...++|.+.+. +..|.|..||..+
T Consensus 492 ~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARN 568 (781)
T ss_dssp CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTT
T ss_pred cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCC
Confidence 3457777 566776554 444333777887665433 2321 11236889988888875544 4455548888765
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 569 ~ 569 (781)
T 3v9f_A 569 F 569 (781)
T ss_dssp C
T ss_pred C
Confidence 4
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.83 E-value=0.071 Score=38.95 Aligned_cols=144 Identities=8% Similarity=0.052 Sum_probs=74.2
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~ 73 (203)
++.+++.|+.+ ..+.+||+.+..-.. .+.........+ .-++..++.|+.+ ..+.+||..+ ..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRT--ESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTT--TEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCC--Cce
Confidence 45566666643 568889988765332 222222222222 2366777777754 4688888764 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+.. ...+ -.++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++.. +++.++.|+
T Consensus 131 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 131 HTKPS-MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeCCC-CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence 33322 1111 11223346666666653 34588999887643322111111111222222 666677766
Q ss_pred CC-----CcEEEEeCCCc
Q 028806 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 209 ~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EETTEEBCCEEEEETTTT
T ss_pred CCCCCCCceEEEeeCCCC
Confidence 43 35888888765
No 311
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.80 E-value=0.16 Score=41.47 Aligned_cols=151 Identities=7% Similarity=-0.096 Sum_probs=86.8
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|.+.+..|+ +-...+.|+.+++........+...-.....+++...+. ++++-...+.|.+.++.. .....+...
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G--~~~~~l~~~ 432 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG--TMRKILISE 432 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECT
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC--CeEEEEEEC
Confidence 4555444443 333456777777665332223333334567889886544 445545678899998863 333333320
Q ss_pred CCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.-.....+ +.|...+|+.... ...|...++. |.....+....-.....+++++++..|+.+. ..+.|..+++...
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 33456777 7887556665543 3566666654 3323233221122578899999777777665 4567888887554
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.71 E-value=0.1 Score=37.99 Aligned_cols=145 Identities=8% Similarity=-0.034 Sum_probs=74.7
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCe-----EEEeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCcc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK 70 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~ 70 (203)
++++++.|+.+ ..+.+||+.+.. .+..+.........+ ..++..++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~-- 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TLGDMIYVSGGFDGSRRHTSMERYDPNI-- 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EECCEEEEEcccCCCcccceEEEEcCCC--
Confidence 45566666643 468899987654 222222222222222 2366677777643 3688888763
Q ss_pred ccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 71 DCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..+..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .++..++.|+.
T Consensus 138 ~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~ 215 (301)
T 2vpj_A 138 DQWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGF 215 (301)
T ss_dssp TEEEEEEE-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred CeEEECCC-CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCC
Confidence 23333322 1111 112233467777777654 458899988765433211111111112222 25667777765
Q ss_pred C-----CcEEEEeCCCcc
Q 028806 144 D-----SMLKLWDLDDIL 156 (203)
Q Consensus 144 d-----~~i~iwd~~~~~ 156 (203)
+ ..+.+||+.+..
T Consensus 216 ~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCc
Confidence 3 468899987653
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.70 E-value=0.1 Score=38.12 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=73.9
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~ 68 (203)
++++++.|+.+ ..+.+||..+..-... +.........+ .-++..++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 45566666654 4588999887654322 21111111122 236666666653 34588888864
Q ss_pred ccccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEE
Q 028806 69 FKDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
..+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-... +... .....++.+ ++..++
T Consensus 179 --~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i~v 252 (306)
T 3ii7_A 179 --ETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCAAV--GSIVYV 252 (306)
T ss_dssp --TEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEEEE--TTEEEE
T ss_pred --CeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEEEE--CCEEEE
Confidence 23333322 1111 112233366677776653 4588999887643322 2211 111222223 667777
Q ss_pred EEeCC-----CcEEEEeCCCc
Q 028806 140 SISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d-----~~i~iwd~~~~ 155 (203)
.|+.+ ..+.+||+.+.
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTT
T ss_pred EeCcCCCeeeeeEEEEcCCCC
Confidence 77743 45888888664
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.67 E-value=0.085 Score=38.76 Aligned_cols=146 Identities=9% Similarity=-0.059 Sum_probs=72.6
Q ss_pred cCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-----CeEEEEEcCCccc
Q 028806 6 DAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-----GTVLLYSWGYFKD 71 (203)
Q Consensus 6 ~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~wd~~~~~~ 71 (203)
++++++.|+.+ ..+.+||+.+.+-...-.....+....+...+++.++.|+. + ..+.+||..+ .
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK--F 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT--T
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC--C
Confidence 34555666532 45888998876533221111111111122246667777765 2 4688888864 2
Q ss_pred cceeeeccCCCc--eeEEEeeCCCEEEEEcCCC-----cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 72 CSDRFVGLSPNS--VDALLKLDEDRVITGSENG-----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.+..+.. ...+ -.++...++++++.|+.++ .+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 176 ~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 176 EWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred eEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCcc
Confidence 3333322 1111 1122344677777777643 47889987764332211111111112222 256677777653
Q ss_pred --------------CcEEEEeCCCc
Q 028806 145 --------------SMLKLWDLDDI 155 (203)
Q Consensus 145 --------------~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccCcCCccccccccCcEEEecCCCC
Confidence 23677887654
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.015 Score=43.66 Aligned_cols=143 Identities=12% Similarity=0.118 Sum_probs=82.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEe--e-CCCEEEEe-cCCCeEEEEEcCCccccceeeec---c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLM--K-NGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG---L 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~---~ 79 (203)
.+++.++.||.|+-+|..+|+.+..++... .++....-. + ++..++.. ..||.|+.++... +.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 478888999999999999999998887541 222221100 1 22333333 5799999999764 322222211 0
Q ss_pred CCCceeE----EE-e----eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc------eEEEEEe-----CCCCeEE
Q 028806 80 SPNSVDA----LL-K----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP------IESLALS-----HDRKFLG 139 (203)
Q Consensus 80 ~~~~v~~----~~-~----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~------i~~i~~~-----~~~~~l~ 139 (203)
...++.. +. . ..+..+++++.+|.+...|+.+|+.+..+....... ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111111 00 0 156678899999999999999999998886542100 0111111 1235666
Q ss_pred EEeCCCcEEEEe
Q 028806 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 666666666665
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.56 E-value=0.13 Score=37.65 Aligned_cols=144 Identities=8% Similarity=-0.029 Sum_probs=72.4
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~ 73 (203)
++++++.|+.+ ..+.+||+.+.+-... +.........+. -++.+++.|+.+ ..+.+||+.+ ..+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPER--NEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCC--CeE
Confidence 45555665532 4578888887654322 111111122222 266677777654 4588888763 233
Q ss_pred eeeeccCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 74 DRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
..+.. ... .-.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 197 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~ 274 (308)
T 1zgk_A 197 RMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGH 274 (308)
T ss_dssp EECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred eeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCC
Confidence 32221 111 1112223366777777654 468899988765332211111101112222 256677777643
Q ss_pred ---CcEEEEeCCCc
Q 028806 145 ---SMLKLWDLDDI 155 (203)
Q Consensus 145 ---~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 275 ~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 275 TFLDSVECYDPDTD 288 (308)
T ss_dssp CBCCEEEEEETTTT
T ss_pred cccceEEEEcCCCC
Confidence 35778887654
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.48 E-value=0.042 Score=38.60 Aligned_cols=135 Identities=8% Similarity=-0.082 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe------EEEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cc---ee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT------VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CS---DR 75 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~---~~ 75 (203)
..+|+....| ++++=....+. ....+ ++.-..+..++|+|++.+.++ .++.++-.+..+... .. .+
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455666666 66665555432 11111 111246779999999986666 677766666532110 00 01
Q ss_pred eecc-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Ccee------eeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 76 FVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRII------QPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+. .-....++ |.|+|.+.++ .||.|+-++..+ +... ..-...- ..+..+.+.|+|.+.+.. |+.
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE--TTE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe--CCc
Confidence 1110 01124667 7899988777 568888777532 1111 1111111 258899999999877766 777
Q ss_pred EEE
Q 028806 147 LKL 149 (203)
Q Consensus 147 i~i 149 (203)
++-
T Consensus 156 lyr 158 (236)
T 1tl2_A 156 FYK 158 (236)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 318
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.41 E-value=0.16 Score=37.33 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=53.6
Q ss_pred cCCEEEEEcCC-------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcccc
Q 028806 6 DAMKLLGTSGD-------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~ 72 (203)
++++++.|+.+ ..+.+||+.+.+-...-..........+...++.+++.|+. -..+.+||..+ ..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK--GD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT--TE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC--CE
Confidence 45556666543 35788888876543221111111111122246667677664 23588898864 23
Q ss_pred ceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCce
Q 028806 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRI 114 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~ 114 (203)
+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-
T Consensus 187 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 187 WKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 333322 1111 112233466777777643 3477888877643
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.41 E-value=0.17 Score=36.87 Aligned_cols=144 Identities=10% Similarity=0.014 Sum_probs=72.5
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++.+++.|+.+ ..+.+||..+.+-... +.........+ .-++..++.|+.++ .+.+||+.+ ..+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLSSVEAYNIKS--NEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEEEEECSSCEEEEEEEEETTT--TEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--EECCEEEEEcCCCCCccCceEEEEeCCC--CeE
Confidence 45556666543 3588899887653322 22111212222 23666777776543 577788753 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcCC-------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .++..++.|+.+
T Consensus 137 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAP-MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHD 214 (302)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBS
T ss_pred eecCC-CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCC
Confidence 33322 1111 112233466667766542 358889988764332211111111112222 256777777654
Q ss_pred -----CcEEEEeCCCc
Q 028806 145 -----SMLKLWDLDDI 155 (203)
Q Consensus 145 -----~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 215 ~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTN 230 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCC
Confidence 36888988764
No 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.37 E-value=0.19 Score=37.25 Aligned_cols=109 Identities=8% Similarity=-0.028 Sum_probs=61.3
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~ 113 (203)
.....+..+++.+++.+++++...+.++-.|- .+.....+.......+..+ +.+++..++ ++.+|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence 34456889999998888777654433333332 1333333322034456667 678876554 4556777666322233
Q ss_pred eeeeeccC---CCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 114 IIQPIAEH---SEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.-..+... ....+..+.+.+++..++++. ++.|
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 32222211 122588899998877666554 6666
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.28 E-value=0.21 Score=36.58 Aligned_cols=144 Identities=11% Similarity=-0.012 Sum_probs=72.1
Q ss_pred cCCEEEEEcC----C-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCc
Q 028806 6 DAMKLLGTSG----D-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~----d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~ 69 (203)
++++++.|+. + ..+.+||+.+.+-... +.........+. -++..++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~- 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPER- 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTT-
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCC-
Confidence 4455566654 2 3578888887653322 111112222222 266677776643 3578888764
Q ss_pred cccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 70 KDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++.. ++..++.|+
T Consensus 147 -~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 147 -DEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp -TEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred -CeEeECCC-CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 22222221 1111 112223366677777653 4588999877643322111111111122222 666777776
Q ss_pred CC-----CcEEEEeCCCc
Q 028806 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 224 ~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETE 241 (308)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred CCCCCccceEEEEeCCCC
Confidence 54 45889998765
No 322
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.24 E-value=0.2 Score=37.69 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=58.4
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---eccCCCceeEE-EeeC---CCEEEEEcCC------CcE
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---VGLSPNSVDAL-LKLD---EDRVITGSEN------GLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~d------~~i 104 (203)
...+.++|.|+++++++ ...+.|++++ ......+..+ .. .......+ ++|+ +..|+++... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999986555 4569999988 3211111111 11 23445667 8887 5566555432 567
Q ss_pred EEEEccCCc-----ee-eeecc--CCCCceEEEEEeCCCCeEEEEe
Q 028806 105 SLVGILPNR-----II-QPIAE--HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 105 ~~~d~~~~~-----~~-~~~~~--~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+++..+. .+ ..+.. ........++|.|+|.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 778776431 11 11331 1111246799999997666543
No 323
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.19 E-value=0.45 Score=39.71 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=79.1
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--cCCCce
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--LSPNSV 84 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~v 84 (203)
|..|+.++-|.+|+..++...... ......|.++...+++.+.+ |+..+-+..++..+. ....+.. .....|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK--KFQIIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC--EEEECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC--cEEEeccCCCCCCeE
Confidence 334444456788887654332111 11235688888777776544 555566888887532 2222221 023567
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC----CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++ ..+++. |..|+. +-|.+|+..+++........ ....|.++...++|++.+ ++.++-|..|+..+.
T Consensus 453 ~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 453 RVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred EEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 777 455555 455555 45888998776543322111 023688999888887544 444344777887654
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.05 E-value=0.21 Score=37.62 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=58.0
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee---eccCCCceeEE-EeeC---CCEEEEEcC----C---
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSVDAL-LKLD---EDRVITGSE----N--- 101 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~----d--- 101 (203)
-...+.++|.|+++++++ ...+.|++++.. +. .+..+ .. .......+ ++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--CceEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999985555 556999988742 22 11111 11 22346667 8887 555555443 2
Q ss_pred -CcEEEEEccCC-------cee-eeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 102 -GLISLVGILPN-------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 -~~i~~~d~~~~-------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..|..|++... +.+ ..+..........|+|.|+|.++++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543 111 112211111245799999998666643
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.04 E-value=0.084 Score=42.31 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=65.0
Q ss_pred ceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----c-------ceeeeccCCCceeEEEeeCCCEEEEEcCCCcEE
Q 028806 39 ELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----C-------SDRFVGLSPNSVDALLKLDEDRVITGSENGLIS 105 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~-----~-------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 105 (203)
....+..+|||++++.++. +.++.++|+..... . ...... .-++....|.++|.-..+.-.|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEE
Confidence 3567889999999888765 78999999863111 1 111122 23444444899995555566799999
Q ss_pred EEEccCC----------ceeeeeccCCCCceEEEEE------eCCCCeEEEEe
Q 028806 106 LVGILPN----------RIIQPIAEHSEYPIESLAL------SHDRKFLGSIS 142 (203)
Q Consensus 106 ~~d~~~~----------~~~~~~~~~~~~~i~~i~~------~~~~~~l~~~~ 142 (203)
.|++... ..+..+..|-. +-.+.- .|+|++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence 9999753 45566666632 333332 56788887765
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.00 E-value=0.29 Score=35.84 Aligned_cols=146 Identities=8% Similarity=-0.003 Sum_probs=72.1
Q ss_pred cCCEEEEEcC-----C------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--------CeEEEEEc
Q 028806 6 DAMKLLGTSG-----D------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSW 66 (203)
Q Consensus 6 ~~~~l~~~~~-----d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~ 66 (203)
++++++.|+. . ..+.+||..+.+-...-.....+....+..-++..++.|+.+ ..+.+||.
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~ 124 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR 124 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC
Confidence 5666666663 1 127788888765432111111111111112256666676632 45888888
Q ss_pred CCccccceeeeccCCCc--eeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 67 GYFKDCSDRFVGLSPNS--VDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.+. .+..+.. -..+ -.++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++ .-+++.+
T Consensus 125 ~~~--~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iy 200 (315)
T 4asc_A 125 LSF--KWGESDP-LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRII 200 (315)
T ss_dssp TTT--EEEECCC-CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred CCC--cEeECCC-CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEE
Confidence 642 2333222 1111 11223456677777765 246889998876433221111111111222 2266777
Q ss_pred EEEeCCC-----cEEEEeCCCc
Q 028806 139 GSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 139 ~~~~~d~-----~i~iwd~~~~ 155 (203)
+.|+.++ .+.+||+.+.
T Consensus 201 v~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 201 VAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEECSSSEEEEEEEEETTTT
T ss_pred EEeccCCCCccceEEEEECCCC
Confidence 7777543 4788888665
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.97 E-value=0.34 Score=36.29 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=88.2
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CC-CEEEEecC---CCeEEEEEcCCc-
Q 028806 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NG-RKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~l~~~~~---d~~i~~wd~~~~- 69 (203)
+++.++++..+ -.|.+.+|+.+.+ .-+.+++|......+.+.. .. ..|+.+.. .+.+.+-++...
T Consensus 160 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~ 238 (365)
T 2xzh_A 160 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 238 (365)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCC
T ss_pred CCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCC
Confidence 56667654432 1367889998765 3467777765544333221 11 13333322 257888888532
Q ss_pred -ccc------ceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 70 -KDC------SDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~~------~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+.. +..+.. ....-.-++ .++.-..++..+.-|.|++||++++.++..-+-..+ .|..-+.+....=++
T Consensus 239 ~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~ 317 (365)
T 2xzh_A 239 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 317 (365)
T ss_dssp TTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEE
T ss_pred CCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEE
Confidence 111 111111 011223344 677788899999999999999999999987766544 676666655545566
Q ss_pred EEeCCCcEEEEeCC
Q 028806 140 SISHDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~~d~~i~iwd~~ 153 (203)
.....|.|.--.+.
T Consensus 318 ~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 318 GVNRKGQVLSVCVE 331 (365)
T ss_dssp EEETTCEEEEEEEC
T ss_pred EEcCCCEEEEEEEC
Confidence 66677776655543
No 328
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.81 E-value=0.37 Score=35.48 Aligned_cols=137 Identities=9% Similarity=0.078 Sum_probs=77.5
Q ss_pred ccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--------------CeEEEEEc
Q 028806 3 FAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------------GTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~~wd~ 66 (203)
|++++..|+... .++.|...+....... .+.. .. +--+++++.+|+.+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456777776653 3566777776544322 2221 11 23457889988877653 24555555
Q ss_pred CCccccceeeeccCCCceeEEEeeCCCEEEEEc--C--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 67 GYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS--E--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +.....+.. .. ...+++++++|+... . ...|...++.. .....+..+ . + ..++|+++.|+..+
T Consensus 96 d--g~~~~~l~~-~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-~--~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 N--GHGSTVLDP-DP---CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-Y--L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp T--SCCCEEEEC-SC---EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-C--C--CCSEEETTEEEEEC
T ss_pred C--CCcceEeec-CC---ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-C--c--eEeeEECCEEEEEe
Confidence 4 333333432 21 113688999999876 2 34465566553 333444433 2 2 45677888887665
Q ss_pred C-CCcEEEEeCCCcc
Q 028806 143 H-DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~-d~~i~iwd~~~~~ 156 (203)
. ...|.+-++.+..
T Consensus 164 ~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 164 PKNGQLYRYDTASQS 178 (302)
T ss_dssp TTTCCEEEEETTTTE
T ss_pred CCCceEEEEECCCCC
Confidence 4 5678887776654
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.55 E-value=0.5 Score=35.19 Aligned_cols=137 Identities=8% Similarity=-0.015 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCeEE--EeecCCccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCccccceeeecc--CCCcee-
Q 028806 17 GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGL--SPNSVD- 85 (203)
Q Consensus 17 ~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~--~~~~v~- 85 (203)
..+.+||+.+.+-. ..+......-.+++. -++.+++.|+. ...+.+||+......+..+... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 57889998876432 222211111022222 25666666653 3457778762222333333220 111111
Q ss_pred EEEeeCCCEEEEEcCC----------------------CcEEEEEccCCce--eeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 86 ALLKLDEDRVITGSEN----------------------GLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d----------------------~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
++...++.+++.|+.+ ..+.+||+.+.+- +..+..... . ..+...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~--~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-Y--GVSLPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-S--SEEEEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-c--ceeEEeCCEEEEEe
Confidence 1334566777777632 2477899876542 333332211 1 12233467777888
Q ss_pred eCCC------cEEEEeCCCccc
Q 028806 142 SHDS------MLKLWDLDDILK 157 (203)
Q Consensus 142 ~~d~------~i~iwd~~~~~~ 157 (203)
+.++ .|.++++++.+.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 8543 355567765543
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.51 E-value=0.48 Score=34.71 Aligned_cols=144 Identities=8% Similarity=-0.018 Sum_probs=70.9
Q ss_pred cCCEEEEEcC----CC-------eEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-------CeEEEEE
Q 028806 6 DAMKLLGTSG----DG-------TLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYS 65 (203)
Q Consensus 6 ~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd 65 (203)
++.+++.|+. ++ .+.+||..+.+-... +....... +++ .-++..++.|+.+ ..+.+||
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLG-EVDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEE-EETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceE-EECCEEEEEcCccCCCCcccceEEEEe
Confidence 5566677762 11 277888877654322 11111111 222 2256667777653 2577788
Q ss_pred cCCccccceeeeccCCCce--eEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 66 WGYFKDCSDRFVGLSPNSV--DALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
..+ ..+..+.. ...+. .++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++. -++..
T Consensus 134 ~~~--~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i 209 (318)
T 2woz_A 134 PVA--AKWSEVKN-LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI 209 (318)
T ss_dssp TTT--TEEEEECC-CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred CCC--CCEeECCC-CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence 753 23333322 11111 1123456777777764 2458899988765332211111111122222 25677
Q ss_pred EEEEeCC-----CcEEEEeCCCc
Q 028806 138 LGSISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 138 l~~~~~d-----~~i~iwd~~~~ 155 (203)
++.|+.+ ..+.+||+.+.
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEcCcCCCCccceEEEEECCCC
Confidence 7777643 34778887665
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.35 E-value=0.7 Score=38.20 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=76.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCccce-EEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceee
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEEL-TSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~ 76 (203)
++++++.|+.+ +.+.+||..+..-...-.....+. .+++...++..++.|+.++ .+.+||..+ ..+..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE--EIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT--TEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC--CceEEc
Confidence 56666776643 357888888764332211111111 1222224778888887654 688898864 233332
Q ss_pred ecc-----CCCceeEE-EeeC-CCEEEEEcC--C-----CcEEEEEccCCce-----eeeec---cCCCCceEEEEEeCC
Q 028806 77 VGL-----SPNSVDAL-LKLD-EDRVITGSE--N-----GLISLVGILPNRI-----IQPIA---EHSEYPIESLALSHD 134 (203)
Q Consensus 77 ~~~-----~~~~v~~~-~~~~-~~~l~~~~~--d-----~~i~~~d~~~~~~-----~~~~~---~~~~~~i~~i~~~~~ 134 (203)
... ......++ +... +.+++.|+. + ..+.+||+.+... -..+. ...... .+++...+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCC
Confidence 210 11122223 4444 667777765 2 4588999887761 11111 111111 22333333
Q ss_pred CCeEEEEeC--------CCcEEEEeCCCcc
Q 028806 135 RKFLGSISH--------DSMLKLWDLDDIL 156 (203)
Q Consensus 135 ~~~l~~~~~--------d~~i~iwd~~~~~ 156 (203)
+..++.|+. ...|.+||+.+..
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 677777763 2458888887653
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.25 E-value=0.8 Score=35.74 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=90.6
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC---CEEEEecC---CCeEEEEEcCCc-
Q 028806 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---RKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~~i~~wd~~~~- 69 (203)
+++.++++..+ -.|.+.+|+.+.+. -+.+++|......+....+. ..++.+.. .+.+.+-++...
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred CCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 56677664332 13678899987653 46777877655444432111 23333333 268888888542
Q ss_pred -cc------cceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 70 -KD------CSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+. .+..+.. ....-.-++ .++....++..+.-|.|++||++++.++..-+-..+ .|..-+.+....=++
T Consensus 238 ~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 316 (494)
T ss_dssp TTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEE
T ss_pred cCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEE
Confidence 11 1111111 011223344 688888999999999999999999999977766544 677666666555566
Q ss_pred EEeCCCcEEEEeCC
Q 028806 140 SISHDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~~d~~i~iwd~~ 153 (203)
.....|.|.--.+.
T Consensus 317 ~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 317 GVNRKGQVLSVCVE 330 (494)
T ss_dssp EEETTCEEEEEEEC
T ss_pred EEccCceEEEEEEc
Confidence 66677777665544
No 333
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.94 E-value=1.8 Score=38.12 Aligned_cols=131 Identities=8% Similarity=0.057 Sum_probs=75.6
Q ss_pred eEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-eccCCCceeEE-EeeC---
Q 028806 18 TLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDAL-LKLD--- 91 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~v~~~-~~~~--- 91 (203)
.|++.+......+...... ...|...+.+ +.+++.++ .+.+.++.+.. +...... .. -...+.|+ +.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~-~~L~~~~~~~-l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHP-QELRQISHTE-MEHEVACLDITPLGDS 567 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEET-TEEEEEEEEE-CSSCEEEEECCCCSSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeC-CceeeecccC-CCCceEEEEeecCCCC
Confidence 3566665544445445433 2346555543 34666654 57788887753 2211111 11 34578888 5542
Q ss_pred ---CCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCC
Q 028806 92 ---EDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 92 ---~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+++.|.. |++|+++++.+.+.+............++.+.. ...+|..|-.||.+.-+.+.
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 478999997 999999999876655433222112344444432 33578888889987666543
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.77 E-value=0.94 Score=34.07 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=59.2
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee----eccCCCceeEE-EeeC---CCEEEEE---cCCCc
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF----VGLSPNSVDAL-LKLD---EDRVITG---SENGL 103 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~---~~d~~ 103 (203)
.-...+.|+|.|++.++++--..|.|++++...... .+..+ .. .......+ ++|+ +..|++. .....
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999999887776589999887542111 11111 11 23456667 7885 3444432 23445
Q ss_pred EEEEEccCC----------cee-eeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 104 ISLVGILPN----------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 104 i~~~d~~~~----------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
|.-|.+..+ +.+ ..+..........|.|.|+|.+.++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 555655431 111 112211111345799999998766654
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.70 E-value=0.97 Score=33.89 Aligned_cols=144 Identities=10% Similarity=0.109 Sum_probs=89.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.-. ..++.|+|+++...+..+.- ...|..=.|-.+..+-+++ +..|+.|++.....+.+.+.. |..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR-~~~ 148 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 148 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEEC-CGG
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeec-chh
Confidence 478888777765 57899999999888777664 3467777776554433333 457999999754466666654 432
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-----eEEEEeC--
Q 028806 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-----FLGSISH-- 143 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~-- 143 (203)
.|..- .+++.++++..+- .|.+.+|..+. +..+.+.+|.. .-..+-.+|+ .++.+..
T Consensus 149 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa---~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 149 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA---SFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEE---EEEEECCTTCSSCEEEEEEEEEET
T ss_pred cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeee---eeEEEecCCCCCCceEEEEEEecC
Confidence 22222 4778888775442 36788998764 45566777732 2233333322 2333322
Q ss_pred -CCcEEEEeCCCc
Q 028806 144 -DSMLKLWDLDDI 155 (203)
Q Consensus 144 -d~~i~iwd~~~~ 155 (203)
.+.++|-++...
T Consensus 225 ~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 225 AGGKLHIIEVGTP 237 (365)
T ss_dssp TEEEEEEEECSSC
T ss_pred CCcEEEEEEcCCC
Confidence 258999998554
No 336
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.63 E-value=1 Score=33.94 Aligned_cols=130 Identities=8% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCeEEEEEcCC--Ce--EEEeecCC-ccceEEEEEeeCCCEEEEec-----------------CCCeEEEEEcCCccccc
Q 028806 16 DGTLSVCNLRK--NT--VQTRSEFS-EEELTSVVLMKNGRKVVCGS-----------------QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 16 d~~i~vw~~~~--~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~ 73 (203)
..+|.+|.+.. +. .+..+.+. -...+.+++.++|.+.++.. ..+.|+.++. +. +
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---~~-~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---ND-V 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT---TC-C
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC---Ce-E
Confidence 45677776653 22 23344332 23578999999998777654 1244555553 22 2
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cce--eeeeccCCCCceEEEEEeC-CCCeEEEEeCC-Cc
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRI--IQPIAEHSEYPIESLALSH-DRKFLGSISHD-SM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~-~~~--~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d-~~ 146 (203)
..+.. .-.....+ |+|+++.++.+. ..+.|..|++.. +.. ...+.. ....-.+++.+ +|++.+++..+ +.
T Consensus 214 ~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~lwva~~~~g~~ 290 (355)
T 3sre_A 214 RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWVGCHPNGMR 290 (355)
T ss_dssp EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcEEEEecCCceE
Confidence 33332 33445667 899998888765 468899999863 332 123322 22467789999 58877766544 34
Q ss_pred EEEEeC
Q 028806 147 LKLWDL 152 (203)
Q Consensus 147 i~iwd~ 152 (203)
|..|+.
T Consensus 291 v~~~~P 296 (355)
T 3sre_A 291 IFFYDA 296 (355)
T ss_dssp HHSCCT
T ss_pred EEEECC
Confidence 444443
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.31 E-value=1.1 Score=33.28 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=27.1
Q ss_pred cCCEEEEEcC-C---------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCC
Q 028806 6 DAMKLLGTSG-D---------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQS 58 (203)
Q Consensus 6 ~~~~l~~~~~-d---------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 58 (203)
++++++.|+. + ..+.+||+.+.+-...-... ..+....+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 3455566654 1 45888998876543221111 1221122222567777777754
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.83 E-value=1.8 Score=33.73 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=57.4
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--ceeeecc-----CCCceeEE-EeeC---CCEEEEEcC------
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRFVGL-----SPNSVDAL-LKLD---EDRVITGSE------ 100 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~-----~~~~v~~~-~~~~---~~~l~~~~~------ 100 (203)
...+.|+|.|+|+++++-...+.|++++... +.. +..+... ....+..+ ++|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999999877765445788887532 221 1111110 12345567 8885 555555442
Q ss_pred -------CCcEEEEEccCC-------ceee-eeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 101 -------NGLISLVGILPN-------RIIQ-PIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 101 -------d~~i~~~d~~~~-------~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...|.-+++..+ +.+. .+..........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555655332 1111 12221112468899999998766654
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.59 E-value=2.7 Score=34.77 Aligned_cols=148 Identities=8% Similarity=0.048 Sum_probs=78.2
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEEEee-c-----CCccc-eEEEEEee-CCCEEEEecCC------CeEEEEEcC
Q 028806 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTRS-E-----FSEEE-LTSVVLMK-NGRKVVCGSQS------GTVLLYSWG 67 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~vw~~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~l~~~~~d------~~i~~wd~~ 67 (203)
++.+++.|+.+ ..+.+||..++.-...- . ....+ -.+++..+ ++..++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45566666642 45888888776433221 1 11111 12333333 67777777653 357788876
Q ss_pred Cccccceeeecc--CCCceeEEEeeCCCEEEEEcCCC--cEEEEEccCCceeeee-----ccCCCCceEEEEEeCC-CCe
Q 028806 68 YFKDCSDRFVGL--SPNSVDALLKLDEDRVITGSENG--LISLVGILPNRIIQPI-----AEHSEYPIESLALSHD-RKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~-----~~~~~~~i~~i~~~~~-~~~ 137 (203)
+ ..+..+... ......++.-.++.+++.|+.++ .+.+||+.+..-...- ... .....++.+..+ +..
T Consensus 477 t--~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 477 T--REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQG 553 (695)
T ss_dssp T--TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEETTTTEE
T ss_pred C--CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEeCCCCEE
Confidence 4 233332220 11111112224788888887654 6899998876533221 111 112233556655 566
Q ss_pred EEEEeC--C-----CcEEEEeCCCcc
Q 028806 138 LGSISH--D-----SMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~--d-----~~i~iwd~~~~~ 156 (203)
++.|+. + ..+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677764 2 358889987665
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.26 E-value=4.1 Score=35.93 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=77.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCceeE
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDA 86 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~v~~ 86 (203)
+|++|-. ..|++|++...+.+. ..... ..|..+.....++++++|..-..+.++.++.....+..+.. .....+++
T Consensus 897 ~Lla~ig-~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 897 KLLASIN-STVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEEEET-TEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred EEEEEcC-CEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence 4444433 689999998654332 11111 11223333345788999887777777665433333333332 13344566
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCC--------ceeeeeccCCCCceEEEE---EeCC---------CCeEEEEeCCCc
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPN--------RIIQPIAEHSEYPIESLA---LSHD---------RKFLGSISHDSM 146 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~i~~i~---~~~~---------~~~l~~~~~d~~ 146 (203)
+..-+...++.+..+|.|.++..... +....-.-|.+..|+++. +.+. ...++.++.+|.
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred EEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence 62223457888899999998876431 111111223233577765 3332 234777888999
Q ss_pred EEEEe
Q 028806 147 LKLWD 151 (203)
Q Consensus 147 i~iwd 151 (203)
|-+.-
T Consensus 1055 Ig~l~ 1059 (1158)
T 3ei3_A 1055 IGLVT 1059 (1158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87763
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.14 E-value=2.5 Score=33.10 Aligned_cols=144 Identities=10% Similarity=0.111 Sum_probs=89.3
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.-. ..++.|+|+++...+..+.-. ..|..=.|-.+..+-+++ +..|+.|++.....+...|.. |..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT--~taVyHWsi~~~s~P~kvFdR-~~~ 147 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 147 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC--SSEEEEEESSSSCCCEEEEEC-CGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEc--CCeeEEecccCCCCchhheec-chh
Confidence 467777777655 589999999998887766643 356666776554433332 467999999654456666654 432
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-----CeEEEEeC--
Q 028806 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----KFLGSISH-- 143 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~l~~~~~-- 143 (203)
.|..- .+++.++++..+- .|.+.+|..+. +..+.+.+|.. .-..+-.+| +.++.+..
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa---~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA---SFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEE---EEEEEECTTCSSEEEEEEEEECST
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeee---eeEEEecCCCCCCceEEEEEEecC
Confidence 22222 4788888775432 47788998764 45556777732 223333333 23333332
Q ss_pred -CCcEEEEeCCCc
Q 028806 144 -DSMLKLWDLDDI 155 (203)
Q Consensus 144 -d~~i~iwd~~~~ 155 (203)
.+.++|-++...
T Consensus 224 ~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 224 AGGKLHIIEVGTP 236 (494)
T ss_dssp TCCEEEEEECSCC
T ss_pred CCcEEEEEEcCCC
Confidence 378999998554
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.33 Score=36.39 Aligned_cols=109 Identities=7% Similarity=-0.011 Sum_probs=61.9
Q ss_pred CEEEEecCCCeEEEEEcCCccccceeeeccC-CCceeEEE---eeCCCEEEEE--cCCCcEEEEEccCCceeeeeccCC-
Q 028806 50 RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSVDALL---KLDEDRVITG--SENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 50 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~v~~~~---~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
..++.++.||.|+-+|..+ ++..-.+.. . ..++...- .+.+..++.+ +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEP-ENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECG-GGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecC-CccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 3677888899999998865 444444443 2 11221111 1122234433 579999999988875544332210
Q ss_pred --CCceEE---EEE-e----CCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 123 --EYPIES---LAL-S----HDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 --~~~i~~---i~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..++.. ... . ..+..+++++.++.+...|+++++..-.
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 012221 000 0 0455778889999999999998876533
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.64 E-value=2.8 Score=37.85 Aligned_cols=146 Identities=10% Similarity=0.121 Sum_probs=84.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP- 81 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 81 (203)
.+|..+.||.-. ..++.|+++.+...+..+.- ...|..=.|-.....-+++ +..|+.|++.....+...|.. |.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR-~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhc-chh
Confidence 467777777654 57899999988766655543 3456666776544433332 457999999643455555544 42
Q ss_pred ---CceeEE-EeeCCCEEEEEc-------CCCcEEEEEccCCceeeeeccCCCCceEEEEEe--CCC-CeEEEEe---CC
Q 028806 82 ---NSVDAL-LKLDEDRVITGS-------ENGLISLVGILPNRIIQPIAEHSEYPIESLALS--HDR-KFLGSIS---HD 144 (203)
Q Consensus 82 ---~~v~~~-~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~--~~~-~~l~~~~---~d 144 (203)
..|..- .+++.++++..+ ..|.+.+|..+. +..+.+.+|.. ....+... +.. ..++.+. ..
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~-~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHh-hhheeccCCCCCCceEEEEEEecCCC
Confidence 223333 478888877543 357899998764 33445566632 22222221 111 2222222 23
Q ss_pred CcEEEEeCCCc
Q 028806 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
+.++|-++...
T Consensus 226 ~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 226 GKLHIIEVGTP 236 (1630)
T ss_pred ceEEEEecCCC
Confidence 68899888654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.45 E-value=2.2 Score=34.42 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=49.0
Q ss_pred eEE-EeeCCCEEEEEcC-CCcEEEEEccC------Cce-------eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 85 DAL-LKLDEDRVITGSE-NGLISLVGILP------NRI-------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~-d~~i~~~d~~~------~~~-------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+ .+|+|++++.++. +.++.+++++. ++. ....... -.....+|.++|.-..+...|..|..
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--lGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--LGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--SCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--CcccEEEECCCCceEeeeeecceEEE
Confidence 345 7999999988765 77899999873 111 2233332 24677899999955556668999999
Q ss_pred EeCCCc
Q 028806 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
|++...
T Consensus 404 Wni~~a 409 (638)
T 3sbq_A 404 WNMEEA 409 (638)
T ss_dssp EEHHHH
T ss_pred EeccHH
Confidence 998654
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.23 E-value=3.9 Score=36.97 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=76.6
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCccceEEEEEe--eC-CCEEEEecC---CCeEEEEEcCCc-
Q 028806 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM--KN-GRKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~i~~wd~~~~- 69 (203)
+++.++++..+ -.|.+.+|+...+ ..+.+++|.+....+... +. ...++.+.. .+.+.+-++...
T Consensus 159 d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred CCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 56667654332 2478889988754 335566665544444332 11 122222221 267888887532
Q ss_pred -cc------cceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 70 -KD------CSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+. .+..+.. ....-.-++ .++.-..++..+.-|.|++||+.++.++..-+-... .|...+-+....=++
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 316 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC-ceEEeccCCCCCceE
Confidence 11 1111111 001112233 577777888899999999999999988765544423 454444333322233
Q ss_pred EEeCCCcEEEEe
Q 028806 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
.....|.|.--.
T Consensus 317 ~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 317 GVNRKGQVLSVC 328 (1630)
T ss_pred EEcCCceEEEEE
Confidence 333455444433
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.45 E-value=4.4 Score=30.32 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEEEE
Q 028806 91 DEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
++.++++....+.|...++..++.... +.......+..+++.|+|.++++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 466776666778888888876543322 211112268899999999865543
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.37 E-value=4.9 Score=31.50 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe---EEEeec---------CCccceEEEEEeeC
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT---VQTRSE---------FSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~ 48 (203)
|+|.|+|. .|+++.+.|.|++++..... .+..+. .....+..|+|+|+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 57889996 45555678999999754221 112221 11356889999986
No 348
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=86.85 E-value=3.2 Score=33.66 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=42.5
Q ss_pred eeEE-EeeCCCEEEEEcCC------------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSEN------------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.-.| |+|.|.+++.-..+ ..+.+.+..+++....+..+.+..++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3456 88999877664432 24566677778877777777666899999999998887653
No 349
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=85.04 E-value=2.9 Score=33.89 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.1
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEe
Q 028806 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 55 (203)
|+|+|.|++++.-..+ +.+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 5688999876665332 24555566667766655543 4689999999999887765
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.18 E-value=8.1 Score=33.31 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=28.6
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+.++ ..++..++++.+.|+++++|++.+++++.+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3444 5667889999999999999999999887664
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.79 E-value=10 Score=27.36 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=72.1
Q ss_pred ccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-----ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028806 37 EEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 37 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d 108 (203)
...|..+.. + +...++..+.+|.++...+.... .....+.. ...+..+ .......++..+..|.+..+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke--gD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE--GDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT--TCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC--CCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 455666644 4 46789999999999998875321 11111222 2334444 344556788888899887776
Q ss_pred ccC---------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 109 ILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 109 ~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
... |.....+.. +..|..+...+++.+|+..+..|.++...+......
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~ 200 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK--NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKT 200 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT--TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCC
T ss_pred hhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccC
Confidence 532 112222322 225766666666778899999999999887655443
No 352
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=83.08 E-value=7.8 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=39.5
Q ss_pred eeEE-EeeCCCEEEEEcC------------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...| |.++|.+.+.... ...|..++..+++....+.......++.++|+||++.|+++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3456 7888887773322 125666777677766655544334689999999999887665
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.64 E-value=16 Score=28.65 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=22.2
Q ss_pred cceEEEEEeeCCC-EEEEecCCCeEEEEEcC
Q 028806 38 EELTSVVLMKNGR-KVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 38 ~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 67 (203)
...+.|+|.|++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3467899999985 44455678999999753
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.58 E-value=4.3 Score=32.82 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=38.2
Q ss_pred CcccccCCEEEEEcC------------CCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecC
Q 028806 1 MTFAADAMKLLGTSG------------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------------d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 57 (203)
|+|.++|.+.+.... .+.|..++..++++...+... ...++.++|+||++.|+++-+
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 467788887664321 125666666677766555543 357899999999998877643
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.05 E-value=2.7 Score=36.23 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.+++..++..++++.+.|+++|+|++.+++.-
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4677888889899999999999999999988653
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.44 E-value=17 Score=26.99 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=87.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC--Cccc-----
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG--YFKD----- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~----- 71 (203)
+..+++..+..|.++...+.. +.....+.. ...+..+........|+..+..|.+..+... .-..
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 466888888999999888653 222223333 3455555555556678888888998888765 2111
Q ss_pred ---cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-------ceeeeeccCC-CCceEEEEEeCCCCeEE
Q 028806 72 ---CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-------RIIQPIAEHS-EYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~-~~~i~~i~~~~~~~~l~ 139 (203)
..-.+. ....|.++ ..+.+.+++.++..|.++.-.+..- +-+..+.... ...+..+....+...++
T Consensus 187 ~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 187 SGVQGMRFN--IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp BCEESSCCC--TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCeeeecCC--CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 111122 23445555 4455678999999999988776432 2222232211 12455544444555677
Q ss_pred EEeCCCcEEEEeCCCccc
Q 028806 140 SISHDSMLKLWDLDDILK 157 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~ 157 (203)
..+.+|.+.-+++.....
T Consensus 265 l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 265 AVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp EEEGGGCEEEEEGGGSCB
T ss_pred EEcCCCeEEEEehhhccc
Confidence 777788888887655443
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.80 E-value=7.8 Score=34.10 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=26.4
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
..++..++++.+.|+++++|++.+++++.+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4567789999999999999999998877663
No 358
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=78.07 E-value=28 Score=28.81 Aligned_cols=137 Identities=19% Similarity=0.125 Sum_probs=73.2
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeec----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----cC
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LS 80 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~ 80 (203)
|..++.+ .|..++..+++...... .....|.++....++.+.+ ++.. -+..|+.... ....+.. ..
T Consensus 115 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~--~~~~~~~~~~~~~~ 189 (758)
T 3ott_A 115 LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNG--KFEGIPLPVHSSQS 189 (758)
T ss_dssp EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTT--EEEEECCCCCTTCS
T ss_pred EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCC--ceEEecCCCccccc
Confidence 3334443 57777776654432200 1134577777766776555 3444 4777876432 1222211 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...|.++ ..+++..|..|+.. -|..++..+++........ ...|.++....+|.+.+ |+. +-+.+++..+.
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTT 261 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEE-EET-TEEEEECCTTS
T ss_pred cceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCC
Confidence 1236777 45666666666643 4778887765433211111 22588888877776544 443 45788887654
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.12 E-value=3.8 Score=36.01 Aligned_cols=31 Identities=26% Similarity=0.139 Sum_probs=26.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEee
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS 33 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 33 (203)
..++..++++-+.|+++|||++.+++++.+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3456789999999999999999999887764
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.24 E-value=20 Score=25.75 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCE
Q 028806 16 DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDR 94 (203)
Q Consensus 16 d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (203)
+|.|+.|-... +++- .-......|..++.... ..+.-. ++.++.|-....++.-. ... ....+..+..-....
T Consensus 119 ~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~hs 192 (282)
T 3qhy_B 119 DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV-PAE-AQSGVDDVAGGIFHS 192 (282)
T ss_dssp TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-CGG-GGSSEEEEEECSSEE
T ss_pred CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-cee-cCCCeEEEEecCCEE
Confidence 67777776543 1110 00111234555544322 222223 68888886653332211 111 123455553222233
Q ss_pred EEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 95 VITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 95 l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++. .+|.|+.|-....-.+. ..... . .|..|+.-.. +.+... |+.|+.|=...
T Consensus 193 ~al--~~G~v~~wG~n~~gqlg~p~~~~-~-~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 193 LAL--KDGKVIAWGDNRYKQTTVPTEAL-S-GVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp EEE--ETTEEEEEECCTTSTTCCCGGGG-S-SCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred EEE--ECCeEEEEECCCCCCCCCCcccC-C-CceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 333 58889888654321111 11111 1 4666654333 333333 89999996544
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=71.18 E-value=8.5 Score=32.03 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=27.0
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
..+..++++-+.|+++++|++.+++++.+...
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 55678999999999999999999987766543
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.73 E-value=30 Score=25.35 Aligned_cols=147 Identities=9% Similarity=0.049 Sum_probs=87.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCC---------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----- 69 (203)
-|+..++++.+.+|.|+-..+..- .....++. ...+..+........++..+..|.++-+....-
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 356778889999999998876532 11112222 344555555556677788888898887766321
Q ss_pred ---cccc---eeeeccCCCceeEEE-ee---CCCEEEEEcCCCcEEEEEccC-------CceeeeeccCCCCceEEEEEe
Q 028806 70 ---KDCS---DRFVGLSPNSVDALL-KL---DEDRVITGSENGLISLVGILP-------NRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 70 ---~~~~---~~~~~~~~~~v~~~~-~~---~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~i~~i~~~ 132 (203)
+..+ -.+. ....+..++ -+ +..+++..+..|.++...+.. |.....+.. +..+..+...
T Consensus 84 ~~~G~~i~~~l~l~--~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~--~d~lv~~~~~ 159 (312)
T 1suu_A 84 ASKGQNISELINLG--DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND--KDFVTSAEIV 159 (312)
T ss_dssp ----CBGGGTSCCC--TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT--TCCEEEEEEE
T ss_pred cCCCcChhhccCCC--CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC--CCEEEEEEEe
Confidence 1111 1122 223455552 22 467888999999999887743 222222333 2256666555
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCc
Q 028806 133 HDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+..++..+..|.+..+.+...
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev 182 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDV 182 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEEeCCCcEEEEEHHHc
Confidence 55667888889999999987653
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.56 E-value=7.6 Score=32.28 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.2
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeec
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE 34 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 34 (203)
.+..++++-+.|.++|+|++.+++++....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 456788999999999999999998876554
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.45 E-value=32 Score=24.74 Aligned_cols=147 Identities=11% Similarity=0.042 Sum_probs=87.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCC------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------- 71 (203)
+..+++..+.+|.++...+.. +.....++. ...+..+........++..+..|.++.+....-..
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 356788889999999888654 222223332 34555555555566788888899988887642111
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-------CceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-------NRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..-.+.. ...+..+ ..+++..++..+..|.++...+.. ++-+..+ ...+ .+..+....+...++..+.
T Consensus 158 ~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~-~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 158 QGIKLEK--NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKD-TLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp ECCCCCT--TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSS-CEEEEEEESSEEEEEEEET
T ss_pred EEEccCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCC-cEEEEEEeCCCCEEEEEcC
Confidence 1111222 3445555 445567888999999998887643 2223333 2223 4555444334456777777
Q ss_pred CCcEEE--EeCCCccc
Q 028806 144 DSMLKL--WDLDDILK 157 (203)
Q Consensus 144 d~~i~i--wd~~~~~~ 157 (203)
+|.+.. +++.....
T Consensus 234 ~G~~ir~~~~~~~i~~ 249 (276)
T 3no0_A 234 NGKAFYDKINQKDIPL 249 (276)
T ss_dssp TSCEEEEEEEGGGSCB
T ss_pred CCeEEEeeeCHHHCCC
Confidence 888877 87655443
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=66.13 E-value=34 Score=24.57 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEE
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRV 95 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 95 (203)
+|.|+.|-....-.+..-......|..++.... ..++. . +|.|+.|-....++.-. ... -...+..+..-. ...
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~-P~~-~~~~v~~ia~G~-~hs 114 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV-PAE-ARSGVDAIAAGA-WAS 114 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC-CGG-GSSSEEEEEEET-TEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC-Ccc-cCCCeEEEECcC-CEE
Confidence 788888875431110000011234655654432 22333 3 78888887653332211 111 122444442222 233
Q ss_pred EEEcCCCcEEEEEcc
Q 028806 96 ITGSENGLISLVGIL 110 (203)
Q Consensus 96 ~~~~~d~~i~~~d~~ 110 (203)
+... +|.|+.|-..
T Consensus 115 ~al~-~G~v~~wG~n 128 (282)
T 3qhy_B 115 YALK-DGKVIAWGDD 128 (282)
T ss_dssp EEEE-TTEEEEEECC
T ss_pred EEEe-CCeEEEecCC
Confidence 3334 7777777644
No 366
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=57.67 E-value=80 Score=26.09 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=70.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--ecc
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGL 79 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~ 79 (203)
++|++.+.++..+-|..++..+++....... ....+.++....+|.+.+. +..| +..|+.... ....+ .+.
T Consensus 481 ~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~--~~~~~~~~gl 556 (758)
T 3ott_A 481 NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDE--SQQSISFGSF 556 (758)
T ss_dssp TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--C--CCCBCCCCC-
T ss_pred CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCC--ceEEecccCC
Confidence 3455544333334577788877665432211 1235777777777766554 4444 778876432 12222 111
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
....+.++...+| .|..++..| |..++..+.+... +... ...+....+......|..|+.+| +..++....
T Consensus 557 ~~~~i~~i~~~~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~G~l~fG~~~G-l~~f~p~~~ 627 (758)
T 3ott_A 557 SNNEILSMTCVKN-SIWVSTTNG-LWIIDRKTMDARQ-QNMT-NKRFTSLLFDPKEDCVYLGGADG-FGISHSNLE 627 (758)
T ss_dssp --CCEEEEEEETT-EEEEEESSC-EEEEETTTCCEEE-C--C-CCCCSEEEEETTTTEEEEECBSE-EEEEEC---
T ss_pred CccceEEEEECCC-CEEEECCCC-eEEEcCCCceeEE-ecCC-CCceeeeEEECCCCcEEEecCCc-eEEEChhhc
Confidence 2344666643455 555666666 6778877655432 2111 11233444444334566677666 556666543
No 367
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=56.94 E-value=51 Score=26.07 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.8
Q ss_pred EEEEEcCCCcEEEEEcc-CC-------ceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 94 RVITGSENGLISLVGIL-PN-------RIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~-~~-------~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.+..|+.+|.|.-.-+. .+ ..+..+... ...+|..|.++++..+|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45677888876533322 21 122233321 1238999999999999999998776654
No 368
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=53.81 E-value=56 Score=23.14 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=81.3
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC------ccccce-eeecc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY------FKDCSD-RFVGL 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~------~~~~~~-~~~~~ 79 (203)
..+++.+.+|.|+--....-.. ...++. ...+..+........|+..+..|.++-+.... .+.++. .+.-.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3456677888887766543110 011222 33454554444455566667788877665531 111111 11110
Q ss_pred CCCceeEEE-eeCCCEEEEEcCCCcEEEEEccC-------CceeeeeccCCCCceEEEEEe-CCCCeEEEEeCCCcEEEE
Q 028806 80 SPNSVDALL-KLDEDRVITGSENGLISLVGILP-------NRIIQPIAEHSEYPIESLALS-HDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 80 ~~~~v~~~~-~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~iw 150 (203)
....|..++ ..++.+++.++..|.++...+.. +.....+... + .+..+... ..+..|+..+.+|.+..+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d-~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-A-HVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-C-CBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-C-EEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234455553 24567788999999999888743 2233333322 2 45444444 345678888889998888
Q ss_pred eCCCccc
Q 028806 151 DLDDILK 157 (203)
Q Consensus 151 d~~~~~~ 157 (203)
.+.....
T Consensus 160 ~~~ei~~ 166 (256)
T 1zvt_A 160 PVSDLPQ 166 (256)
T ss_dssp EGGGSCB
T ss_pred EHHHCCC
Confidence 8755433
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=50.96 E-value=72 Score=23.56 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred ccceEEEEEee---CCCEEEEecCCCeEEEEEcCCcccc------ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 37 EEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDC------SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 37 ~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
...|..+...+ +..+++..+.+|.++.-.+...... ...+.. ...+..+ .......|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke--~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD--NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT--TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC--CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 34565554433 4678999999999998877531111 112222 2334444 3445567888888888777
Q ss_pred EEcc--C----Cc---eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 107 VGIL--P----NR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 107 ~d~~--~----~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+... . +. -...+....+..|.++...+++.+|+..+..|.++.-.+.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 231 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPV 231 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred EECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccc
Confidence 7655 2 11 11112222222577776666677899999999999888765543
No 370
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=50.50 E-value=34 Score=27.40 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=35.5
Q ss_pred CEEEEEcCCCcEEEEEccCC----ceeeeeccCC-CCceE-EEEEeCCCCeEEEEeCCCcEEE
Q 028806 93 DRVITGSENGLISLVGILPN----RIIQPIAEHS-EYPIE-SLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 93 ~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~-~~~i~-~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+..|+.+|.|.-..+..+ ..+..+.... +.+|. .|.+++++.+|++++..+.++|
T Consensus 414 tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 414 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 34667888888765555422 1233332221 23785 8999999999999887655544
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=46.98 E-value=87 Score=23.34 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=25.4
Q ss_pred CEEEEEcCCCeEEEEEcCC-C---eEEEeecCCccceEEEEEee--CCCEEEEecCCC
Q 028806 8 MKLLGTSGDGTLSVCNLRK-N---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSG 59 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~-~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~ 59 (203)
..|.+++..| +.+++... + ...... .....|.+|++.| .+..++ +...+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~-g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLM-AARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEE-EEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEE-EecCC
Confidence 3566676666 55555432 2 222111 2245699999998 444444 44344
No 372
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=39.89 E-value=73 Score=25.47 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=34.6
Q ss_pred EEEEEcCCCcEEEEEcc-CC--ceeeeeccCCCCce-EEEEEeCCCCeEEEEeCCCcEEE
Q 028806 94 RVITGSENGLISLVGIL-PN--RIIQPIAEHSEYPI-ESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~-~~--~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.+..|+.+|.|.-.-+. .+ ..+..+......+| ..|.++++..+|++++..+.++|
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 45567788887644332 21 12233322223377 48999999999999887776665
No 373
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=39.38 E-value=1.5e+02 Score=24.14 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=33.7
Q ss_pred EEEEEcCCCcEEEEEc-cCC----c-eeeeecc-CCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 94 RVITGSENGLISLVGI-LPN----R-IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~-~~~----~-~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.+..|+.+|.|.-.-+ ..+ . .+..+.. ....+|..|.++++..+|++++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 4567778887653332 222 1 1222321 11237899999999999998887665554
No 374
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=39.25 E-value=1.5e+02 Score=24.53 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=33.3
Q ss_pred EEEEEcCCCcEE-EEEccCCc-------eeeeecc-CCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 94 RVITGSENGLIS-LVGILPNR-------IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 94 ~l~~~~~d~~i~-~~d~~~~~-------~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.++.|+.+|.|. +.-...+. .+..+.. ....+|..|.+++++.+|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466778888765 33222111 1222211 11237999999999999999987765544
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=38.32 E-value=1.7e+02 Score=24.30 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=76.1
Q ss_pred ccccCCEEEEE-c----CCCeEEEEEcCCCeEEE-eecCCcc--------ceEEEEEeeCCCEEEEe----------cCC
Q 028806 3 FAADAMKLLGT-S----GDGTLSVCNLRKNTVQT-RSEFSEE--------ELTSVVLMKNGRKVVCG----------SQS 58 (203)
Q Consensus 3 ~sp~~~~l~~~-~----~d~~i~vw~~~~~~~~~-~~~~~~~--------~v~~~~~~~~~~~l~~~----------~~d 58 (203)
++|++++++.+ + .-..++++|+.+++.+. .+. ... ....++|..+...+++. +..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 78999987664 2 22469999999987753 122 111 12445887544444432 113
Q ss_pred CeEEEEEcCCcccc-ceeeeccCCCcee-EE-EeeCCCE-----EEEEcC---CCcEEEEEccC--CceeeeeccCCCCc
Q 028806 59 GTVLLYSWGYFKDC-SDRFVGLSPNSVD-AL-LKLDEDR-----VITGSE---NGLISLVGILP--NRIIQPIAEHSEYP 125 (203)
Q Consensus 59 ~~i~~wd~~~~~~~-~~~~~~~~~~~v~-~~-~~~~~~~-----l~~~~~---d~~i~~~d~~~--~~~~~~~~~~~~~~ 125 (203)
..++.|.+.+.... ...+.. ....+. .. .++++.+ +++.+. ...+.+.++.. ++ ...+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEV-PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEEC-CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEecc-CCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--
Confidence 56888888653222 223443 333332 22 4556552 443332 23456666542 33 233333322
Q ss_pred eEEEEEeCCCCeEEEE----------eCCCcEEEEeCCCcc
Q 028806 126 IESLALSHDRKFLGSI----------SHDSMLKLWDLDDIL 156 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~----------~~d~~i~iwd~~~~~ 156 (203)
..+..++++.+++.. ...+.|.+.++.++.
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 331 (711)
T 4hvt_A 292 -ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLL 331 (711)
T ss_dssp -CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGG
T ss_pred -ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCccc
Confidence 123344565555532 246678999987754
No 376
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=37.86 E-value=1.5e+02 Score=23.45 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=35.0
Q ss_pred EEEEEcCCCeEEEEEcC-CCe-------EEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 9 KLLGTSGDGTLSVCNLR-KNT-------VQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~-~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
.+..|+.+|.|.-.-+. .+. .+..+. ....+|..|.++++..+|++++..+.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 45667788877544332 211 112222 23578899999999999999988776554
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.06 E-value=1.2e+02 Score=22.02 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=69.5
Q ss_pred cceEEEEEee---CCCEEEEecCCCeEEEEEcCCc------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEE
Q 028806 38 EELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYF------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLV 107 (203)
Q Consensus 38 ~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~ 107 (203)
..|..+...+ +..+|+..+..|.++...+... +.....+.. ...+-.+ .......++..+..|.+..+
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~--~d~lv~~~~~~~~~~i~l~T~~G~~~r~ 177 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND--KDFVTSAEIVFKDEKVICLSKKGSAFIF 177 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT--TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 3455554332 4567888889999998877421 111112222 3344444 34445678888899988888
Q ss_pred EccC----C---ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 108 GILP----N---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 108 d~~~----~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.+.. + .-+..+....+..|..+..-.++..|++.+..|..+...+.....
T Consensus 178 ~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~ 234 (312)
T 1suu_A 178 NSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISE 234 (312)
T ss_dssp EGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCB
T ss_pred EHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcc
Confidence 7643 1 112222222222566666555667788889999999998865533
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.72 E-value=1.4e+02 Score=22.50 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=91.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--- 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--- 68 (203)
|.+-|+..++++.+.+|.|+--.+.. +.....++. ...+..+........|+..+..|.++.+....
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcC
Confidence 34567888999999999999876531 223334443 45566666555666777777788877665421
Q ss_pred c-----cccceee-eccCCCceeEEE--e--eCCCEEEEEcCCCcEEEEEccCC-------ceeeeeccCCCCceEEEEE
Q 028806 69 F-----KDCSDRF-VGLSPNSVDALL--K--LDEDRVITGSENGLISLVGILPN-------RIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 69 ~-----~~~~~~~-~~~~~~~v~~~~--~--~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~i~~i~~ 131 (203)
. +..+..+ .-.....|..++ . ....+++.++..|.++...+... .....+... + .+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~-d-~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG-D-ALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT-C-CEEEEEE
T ss_pred CCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC-C-EEEEEEE
Confidence 1 1111111 110234555552 2 24568999999999998876432 122223222 2 4555555
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
......|+..+..|.+..|......
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~~v~ 182 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGESTVR 182 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGGGSC
T ss_pred eCCCceEEEEeCCCeEEEEEccccC
Confidence 5555678888888888888765443
No 379
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=33.51 E-value=1.9e+02 Score=23.49 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=35.4
Q ss_pred EEEEEcCCCeEEEEEcCC-C-----eEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEE
Q 028806 9 KLLGTSGDGTLSVCNLRK-N-----TVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~-~-----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 64 (203)
.+..|+.+|.|.-.-... + ..+..+. ....+|..+.++++...|++++..+.+++-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 456677788776433322 2 1222232 245678899999998999998887666553
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.74 E-value=1.4e+02 Score=21.66 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------- 71 (203)
+..+++..+..|.++...+.. +.....+... ..+..+........++..+..|.+..+....-..
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 345677788889988887641 2222223333 5565655555556777788889888887742111
Q ss_pred -cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-------ceeee--eccCCCCceEEEEEeCCCCeEEE
Q 028806 72 -CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-------RIIQP--IAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 72 -~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~--~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
..-.+. ....+..+ ...++..+++.+..|.++-.++... +-+.. +....+ .+..+....+...|+.
T Consensus 187 v~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~-~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 187 VRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG-LVVGAVQVDDCDQIMM 263 (307)
T ss_dssp EECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTC-SEEEEEEECTTCEEEE
T ss_pred eEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCC-eEEEEEEeCCCceEEE
Confidence 111122 22344455 2344567888899999888877421 11112 222212 4555444344455667
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
.+.+|.+.-+.+....
T Consensus 264 ~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 264 ITDAGTLVRTRVSEIS 279 (307)
T ss_dssp EESSCCEEEEEGGGSC
T ss_pred EcCCCcEEEEeccccc
Confidence 7778887777765543
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.14 E-value=84 Score=18.86 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.2
Q ss_pred CCcEEEEE
Q 028806 101 NGLISLVG 108 (203)
Q Consensus 101 d~~i~~~d 108 (203)
+|.+.+++
T Consensus 66 dGNLVl~d 73 (113)
T 3mez_B 66 SGELDITD 73 (113)
T ss_dssp TSCEEEEC
T ss_pred CCcEEEEC
Confidence 34444443
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.21 E-value=1.6e+02 Score=21.31 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=83.8
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEE---------EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC---c---
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQ---------TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---F--- 69 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~--- 69 (203)
|+...+++.+.+|.|+--.+..-+.. ..++. ...+..+........|+..+..|.++-+.... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 45667888999999988776542111 11222 33455555555566777777788877665531 1
Q ss_pred --cccce---eeeccCCCceeEEEe----eCCCEEEEEcCCCcEEEEEccC-------CceeeeeccCCCCceEEEEEeC
Q 028806 70 --KDCSD---RFVGLSPNSVDALLK----LDEDRVITGSENGLISLVGILP-------NRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 70 --~~~~~---~~~~~~~~~v~~~~~----~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+.++. .+. ....|..++. .++.+++..+..|.++...+.. |.....+..+ + .+..+....
T Consensus 80 a~G~~i~~~l~l~--~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d-~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLPLE--QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-D-ELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSCCC--TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-C-CEEEEEEEC
T ss_pred CCCeEhhhccCCC--CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-C-EEEEEEEeC
Confidence 11111 122 2334555522 3567899999999999887642 1122223333 3 555555555
Q ss_pred CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 134 DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+...|+..+..|.+..+......
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~ 178 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVR 178 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCEEEEECCCCcEEEEEHHHcC
Confidence 55677888888988888765443
No 383
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=28.02 E-value=2e+02 Score=23.81 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=34.8
Q ss_pred EEEEEcCCCeEE-EEEcCCCe-------EEEee--cCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 9 KLLGTSGDGTLS-VCNLRKNT-------VQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 9 ~l~~~~~d~~i~-vw~~~~~~-------~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
.++.|+.+|.|. +....... .+..+ .....+|..|.++++...|++++..+.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 456677788775 33222111 12222 234567899999999999999998876655
No 384
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.90 E-value=2e+02 Score=21.49 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=72.5
Q ss_pred EEEEcCCCeEEEEEcCCC-----------eEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----
Q 028806 10 LLGTSGDGTLSVCNLRKN-----------TVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---- 73 (203)
.+.-..+|.|+.|-.... .....+.. ....+..++++......+....+|.|+.|-....++.-
T Consensus 65 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~ 144 (389)
T 3kci_A 65 LFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR 144 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred EEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC
Confidence 334456888999864320 11112221 12234445666556666667789999999654322110
Q ss_pred ------eeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-Cc----------eeeeeccCCCCceEEEEEeCCCC
Q 028806 74 ------DRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NR----------IIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 74 ------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~----------~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
..+.......+..+ ..-....++...+|.|+.|-... ++ .-..+.......|..++......
T Consensus 145 ~~~~~p~~v~~l~~~~i~~v-a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~ 223 (389)
T 3kci_A 145 SPCDRPRVIESLRGIEVVDV-AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA 223 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEE-EECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC
T ss_pred ccCcCCeEecccCCCeEEEE-EeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc
Confidence 00111011123333 33344555666788898886432 11 01111122122566666544345
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028806 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+.+....++.|+.|=..
T Consensus 224 ~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 224 QTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEEEETTTEEEEEECC
T ss_pred EEEEEccCCEEEEEeCC
Confidence 66666788999999643
No 385
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=26.74 E-value=1.6e+02 Score=24.44 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=34.5
Q ss_pred CEEEEEcCCCcEEEEEccC-C---ceeeeeccC-CCCce-EEEEEeCCCCeEEEEeCCCcEEE
Q 028806 93 DRVITGSENGLISLVGILP-N---RIIQPIAEH-SEYPI-ESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 93 ~~l~~~~~d~~i~~~d~~~-~---~~~~~~~~~-~~~~i-~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+..|+.+|.|.-.-+.. . ..+..+... ...+| ..|.++++..+|+.++..+.++|
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 3456788888876544332 1 123333221 12366 68999999889988887665555
No 386
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=25.80 E-value=2.7e+02 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
+|..|.++++...|++++..+.++|-
T Consensus 471 pI~~L~ls~~~~~LYV~s~~~V~qVP 496 (565)
T 3oky_B 471 RIMGMQLDRASGSLYVAFSTCVIKVP 496 (565)
T ss_dssp CCCEEEEEGGGTEEEEECSSCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEecCeEEEee
Confidence 78899999999999998877766653
No 387
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.30 E-value=1.3e+02 Score=24.02 Aligned_cols=55 Identities=7% Similarity=-0.034 Sum_probs=33.2
Q ss_pred EEEEEcCCCeEEEEEcCCC----eEEEeec--CCccceE-EEEEeeCCCEEEEecCCCeEEE
Q 028806 9 KLLGTSGDGTLSVCNLRKN----TVQTRSE--FSEEELT-SVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~----~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
.++.|+.+|.|.-..+..+ ..+..+. ....+|. .|.++++..+|++++..+.++|
T Consensus 415 V~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 415 VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4566777887765444321 1222222 2245674 8888888888888887654444
No 388
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=23.84 E-value=3.1e+02 Score=22.65 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=33.5
Q ss_pred EEEEEcCCCcEEEE-EccCCc-eeeeecc-CCCCceEEEEEeCCC--CeEEEEeCCCcEEE
Q 028806 94 RVITGSENGLISLV-GILPNR-IIQPIAE-HSEYPIESLALSHDR--KFLGSISHDSMLKL 149 (203)
Q Consensus 94 ~l~~~~~d~~i~~~-d~~~~~-~~~~~~~-~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i 149 (203)
.++.|+.+|.|.-. ...... .+..+.. ....+|..|.++++. .+|++++..+.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56677888876433 333322 1222211 112378899999988 88988887765544
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.78 E-value=2.5e+02 Score=21.16 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--------
Q 028806 7 AMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------- 71 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------- 71 (203)
..+|+.++..|.++...+.. +.....+.. ...+..+........++..+..|.+..+....-..
T Consensus 113 ~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV 191 (370)
T 3l6v_A 113 NRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe
Confidence 45788888889998887642 222223333 34555555555556777788889888887642110
Q ss_pred cceeeeccCCCceeEE-Eee-----------------------------------CCCEEEEEcCCCcEEEEEccCC---
Q 028806 72 CSDRFVGLSPNSVDAL-LKL-----------------------------------DEDRVITGSENGLISLVGILPN--- 112 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~-----------------------------------~~~~l~~~~~d~~i~~~d~~~~--- 112 (203)
..-.+. ....|.++ ..+ .+..+++.+..|..+...+..-
T Consensus 192 ~~i~L~--~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~ 269 (370)
T 3l6v_A 192 RGIRLA--KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRK 269 (370)
T ss_dssp ECCCCC--TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCB
T ss_pred eeEEeC--CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhccc
Confidence 011111 12334444 222 4467889999999888877532
Q ss_pred ----ceeeeec--cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 113 ----RIIQPIA--EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 113 ----~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+-+..++ ...+ .+..+.+..+...++..+..|.+.-..+...
T Consensus 270 ~Rg~kGv~~~k~~~~~g-~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i 317 (370)
T 3l6v_A 270 GRGTQGVIGIQTTERNG-KLVRAVLLGSTDEVMLISDGGTLVRTRGSEI 317 (370)
T ss_dssp CTTSCCEESSCCCTTTC-SEEEEEEECTTCEEEEEETTCCEEEEEGGGS
T ss_pred ccCCcceEEEEecCCCC-cEEEEEEeCCCceEEEEcCCCeEEEeeHhhC
Confidence 1122222 2222 4555444444456666676777666655443
No 390
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.70 E-value=3.4e+02 Score=22.39 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=35.1
Q ss_pred EEEEEcCCCeEEEE-EcCCCe-EEEee--cCCccceEEEEEeeCC--CEEEEecCCCeEEE
Q 028806 9 KLLGTSGDGTLSVC-NLRKNT-VQTRS--EFSEEELTSVVLMKNG--RKVVCGSQSGTVLL 63 (203)
Q Consensus 9 ~l~~~~~d~~i~vw-~~~~~~-~~~~~--~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~ 63 (203)
.++.|+.+|.|.-. ...... .+..+ .....+|..|.++++. .+|++++..+.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56677888887533 433332 22222 1235678889999887 88988888776555
Done!