BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028807
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 317 bits (812), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 178/203 (87%)
Query: 1 MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
MGR++YLAMKTDD L++SD ELK+AAKKL +D ++LGGLGFG SFLK++ASFAAI
Sbjct: 1 MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60
Query: 61 YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
YLLILDRTNW++ MLT+LL+PYIF S PSV+FNF G+VG+WIAF+AVVLRLFFP+HFPD
Sbjct: 61 YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120
Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
WL+MPGSLILLLVV+P F AH ++ +W+G VI L IGCYLLQEHIRASGGFRNSFTQ G
Sbjct: 121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180
Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
+SNTLGI+LLLVYPVWAL++ ++
Sbjct: 181 VSNTLGIILLLVYPVWALIVRVM 203
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 281 bits (720), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/202 (65%), Positives = 164/202 (81%), Gaps = 1/202 (0%)
Query: 1 MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
MGR +LAMKT++ AA LI+SD NE AAKKLV D LGG+GFGTS L+W AS AI
Sbjct: 1 MGRGEFLAMKTEEN-AANLINSDMNEFVAAAKKLVKDVGMLGGVGFGTSVLQWAASIFAI 59
Query: 61 YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
YLLILDRTNW++ MLT LLVPYIFF+ PSV+F FF G+ G+WIA IA+++RLFFP+ FP+
Sbjct: 60 YLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPE 119
Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
WL++P +LIL++VV+PS A TL++SWVG VICL+I CYL EHI+ASGGF+NSFTQ +G
Sbjct: 120 WLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNG 179
Query: 181 ISNTLGIVLLLVYPVWALVLHL 202
ISNT+GIV LLVYPVW + H+
Sbjct: 180 ISNTIGIVALLVYPVWTIFFHI 201
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/192 (64%), Positives = 159/192 (82%)
Query: 8 AMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDR 67
+++ D +I SDFNEL IAAK L A L GLGFGTS L+WVAS AAIYLL+LDR
Sbjct: 5 SLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLLVLDR 64
Query: 68 TNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGS 127
TNW++NMLT+LL+PYIFFS PS++F FRGE+G+WIAF+AVV++LFFP+H ++L++P +
Sbjct: 65 TNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVA 124
Query: 128 LILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGI 187
L+LL VVAP+ A T +DSW+G+ ICL IGCYLLQEHIRASGGFRN+FT+ +GISNT+GI
Sbjct: 125 LVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGI 184
Query: 188 VLLLVYPVWALV 199
+ L+V+PVWAL+
Sbjct: 185 ICLVVFPVWALI 196
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 7/175 (4%)
Query: 25 NELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWR--SNMLTALLVPY 82
NE++ A KL++ G T FL+W+AS A++L+ILD+T W+ +N++ +LL PY
Sbjct: 8 NEIQAVAGKLIHS---YGVPVMITLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPY 64
Query: 83 IFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHT 142
+F S P V+F R VG+WIA + V+LRLF P HF + L++PG+ ILL+VV PS
Sbjct: 65 LFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAI 124
Query: 143 LKDS--WVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPV 195
+D + G +CLL YL+ +H +A GG +NSFTQ ++ ++ + +L VYP+
Sbjct: 125 FRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILFVYPI 179
>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1
Length = 226
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 5 NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLI 64
N L + D Q A +S+ + + +V AT + L+W+++ + + L+
Sbjct: 45 NPLRLSADRQRTAT-VSARAEKRRKRGSSVVCYATPM----LSVHNLQWISTISCVALMF 99
Query: 65 LDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDM 124
T + +VP P + ++ +GE G W AF+A++ RLFF FP L++
Sbjct: 100 ARGTGIHKS----FVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFF--SFPVELEL 153
Query: 125 PGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQ 177
P +LL++VAP + +++ G ++ L I C+L +H +G + +F Q
Sbjct: 154 PFIALLLVIVAP-YQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQ 205
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 5 NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLI 64
N L + D Q A +S+ + + +V A + + L+W+++ + + L++
Sbjct: 45 NPLRLSGDRQRTAT-VSTRVEKRRKRGSSVVCYAAPISA-----NSLQWISTISCLALML 98
Query: 65 LDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDM 124
T + +++VP PS + + +GE G W AF+A++ RLFF FP L++
Sbjct: 99 ARGTG----IHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFT--FPGELEL 152
Query: 125 PGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQG 178
P +LL++VAP + ++ G +I + I +L +H +G ++ +G
Sbjct: 153 PFIALLLVIVAP-YQVMNIRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAYEKG 205
>sp|Q74K31|G6PI_LACJO Glucose-6-phosphate isomerase OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=pgi PE=3 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 21 SSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVAS 56
+F+ +K AAKK+ ND+ L G+G G S+L AS
Sbjct: 57 KDEFDRIKKAAKKIQNDSEVLVGIGIGGSYLGAQAS 92
>sp|Q042K0|G6PI_LACGA Glucose-6-phosphate isomerase OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=pgi PE=3 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 21 SSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVAS 56
+F+ +K AAKK+ ND+ L G+G G S+L AS
Sbjct: 57 KDEFDRIKKAAKKIQNDSEVLVGIGIGGSYLGAQAS 92
>sp|Q6HN78|ATKB_BACHK Potassium-transporting ATPase B chain OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=kdpB PE=3 SV=1
Length = 697
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 103 IAFIAVVLRLFFPRH---FPDWLDMPGSLILLLVVAPSFFAHTLKD 145
I F+ + FFP H P W ++ SLILL V + FA L +
Sbjct: 62 IGFVITFILSFFPSHSSSIPGWFNITVSLILLFTVLFANFAEALAE 107
>sp|B7JRB8|ATKB_BACC0 Potassium-transporting ATPase B chain OS=Bacillus cereus (strain
AH820) GN=kdpB PE=3 SV=1
Length = 697
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 103 IAFIAVVLRLFFPRH---FPDWLDMPGSLILLLVVAPSFFAHTLKD 145
I F+ + FFP H P W ++ SLILL V + FA L +
Sbjct: 62 IGFVITFILSFFPSHSSSIPGWFNITVSLILLFTVLFANFAEALAE 107
>sp|Q20EZ8|FTSHL_OLTVI ATP-dependent zinc metalloprotease FtsH homolog
OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1
Length = 2292
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 47 GTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRG 97
G +F W +F Y ILD N+ YI F F F FF G
Sbjct: 11 GETFTIWKFTFFKFYFGILDHREQTKNLFLNYSTKYISFEFLCCCFPFFIG 61
>sp|Q7N3Z4|NHAB_PHOLL Na(+)/H(+) antiporter NhaB OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=nhaB PE=3 SV=1
Length = 515
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 119 PDWLDMPGSLILLLVVAPS--FFAHTLKDSWVGVV-----ICLLIGCYLLQE----HIRA 167
PDW + ++I+ L++ P FF + W+ V+ + + + CY LQ I A
Sbjct: 18 PDWYKL--AIIIFLIINPLIFFFINPFVTGWLLVIEFIFTLAMALKCYPLQPGGLLAIEA 75
Query: 168 SG-GFRNSFTQGHGISNTLGIVLLLVYPV 195
G + GH I+N L +VLLL++ V
Sbjct: 76 VIIGMTSPQQVGHEIANNLEVVLLLIFMV 104
>sp|O35018|LMRB_BACSU Lincomycin resistance protein LmrB OS=Bacillus subtilis (strain
168) GN=lmrB PE=3 SV=1
Length = 479
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 104 AFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVI----CLLIGCY 159
F++ V F ++ P WL +PG +I+ +V+ FF++ S ++I CL+IG
Sbjct: 321 GFMSPVTGRLFDKYGPKWLVIPGFVIVTVVLW--FFSNVTTTSTAVLIIILHTCLMIGIS 378
Query: 160 LLQEHIRASGGF---RNSFTQGHGISNTL 185
++ + +G R + G I NTL
Sbjct: 379 MIMMPAQTNGLNQLPREFYPDGTAIMNTL 407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.145 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,162,728
Number of Sequences: 539616
Number of extensions: 2854526
Number of successful extensions: 8545
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8530
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)