Query 028807
Match_columns 203
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05562 WCOR413: Cold acclima 100.0 1.8E-90 4E-95 583.0 7.3 184 7-190 1-186 (187)
2 PF03188 Cytochrom_B561: Eukar 44.2 88 0.0019 23.8 5.9 56 144-201 39-94 (137)
3 PF10167 NEP: Uncharacterised 43.6 17 0.00037 29.3 2.0 13 156-168 30-42 (118)
4 COG3594 NolL Fucose 4-O-acetyl 42.5 20 0.00042 33.9 2.4 120 74-195 70-214 (343)
5 KOG0173 20S proteasome, regula 39.2 25 0.00054 32.4 2.5 45 4-48 159-208 (271)
6 smart00665 B561 Cytochrome b-5 35.1 1.4E+02 0.003 22.9 5.7 55 144-200 38-92 (129)
7 smart00805 AGTRAP Angiotensin 28.2 66 0.0014 27.7 3.2 30 141-170 85-117 (159)
8 PF02322 Cyto_ox_2: Cytochrome 26.7 3.8E+02 0.0082 24.5 7.9 49 113-163 275-323 (328)
9 PLN02595 cytochrome c oxidase 24.3 62 0.0013 26.0 2.2 19 146-164 48-67 (102)
10 PF11466 Doppel: Prion-like pr 23.9 63 0.0014 21.0 1.7 16 153-168 9-24 (30)
11 PF13231 PMT_2: Dolichyl-phosp 23.8 3E+02 0.0066 20.3 7.4 119 55-196 34-157 (159)
12 COG4828 Predicted membrane pro 23.4 1E+02 0.0023 25.2 3.3 95 48-167 11-107 (113)
13 KOG4523 Uncharacterized conser 22.4 60 0.0013 27.6 1.9 13 156-168 30-42 (157)
14 smart00576 BTP Bromodomain tra 22.3 1.3E+02 0.0027 21.7 3.3 26 15-40 31-56 (77)
15 COG3008 PqiB Paraquat-inducibl 21.7 77 0.0017 31.9 2.7 36 147-182 24-60 (553)
16 PRK09548 PTS system ascorbate- 21.3 2.4E+02 0.0052 28.7 6.0 94 47-154 133-240 (602)
17 PF09753 Use1: Membrane fusion 20.4 3.5E+02 0.0077 23.4 6.2 38 17-60 201-238 (251)
18 COG0395 UgpE ABC-type sugar tr 20.0 96 0.0021 27.9 2.8 76 47-123 84-174 (281)
No 1
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=100.00 E-value=1.8e-90 Score=582.97 Aligned_cols=184 Identities=72% Similarity=1.226 Sum_probs=180.6
Q ss_pred cccccC--hHHHHHHHHhhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHHHHHhCCCccchhhhhhhhhhhh
Q 028807 7 LAMKTD--DQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIF 84 (203)
Q Consensus 7 l~m~t~--~~~~~~~i~sd~~~l~~aa~kL~~ha~~l~~~g~~t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~ 84 (203)
|+|||| ++.++++|+||+||++.||||+++||++++|+|++|+++||++++||+|||++|||||||||+|||||||+|
T Consensus 1 l~mkt~~~~~~~~~~l~sd~~~l~~aa~kl~~~a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~ 80 (187)
T PF05562_consen 1 LAMKTDSSSEFAAALLSSDLQELGMAAKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIF 80 (187)
T ss_pred CCccccccchhhhhhhccCHHHHHHHHHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHH
Confidence 689997 677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhcccchhHHHHHHHHHHhhcCCCCCCcccchhhhhhhhhhchhhhHhhhccchhhHHHHHHHHHHHHHHH
Q 028807 85 FSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEH 164 (203)
Q Consensus 85 l~~Ps~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLvvvaP~~~~~~~R~s~~G~vI~L~Ia~YLl~qH 164 (203)
+|+|+++|||+|||||+||||+|+++|||||||||||||||++++||+||||||+|+++||||+|++||++|||||+|||
T Consensus 81 lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl~qH 160 (187)
T PF05562_consen 81 LSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLLQQH 160 (187)
T ss_pred HhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcccccCCccchhhHHHHHH
Q 028807 165 IRASGGFRNSFTQGHGISNTLGIVLL 190 (203)
Q Consensus 165 i~~~Gg~r~aF~q~~gi~~Ti~Ii~l 190 (203)
||++||+||||+|+|||+||+||+++
T Consensus 161 i~~~Gg~r~aF~~~~gis~t~~I~ll 186 (187)
T PF05562_consen 161 IRASGGFRNAFTQGSGISNTIGIILL 186 (187)
T ss_pred HHhcCChhhhhhcccccceeeEEEEe
Confidence 99999999999999999999999875
No 2
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=44.22 E-value=88 Score=23.76 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=42.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCCcccccCCccchhhHHHHHHHHHHHHHHHHh
Q 028807 144 KDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLH 201 (203)
Q Consensus 144 R~s~~G~vI~L~Ia~YLl~qHi~~~Gg~r~aF~q~~gi~~Ti~Ii~l~v~Pvw~l~~~ 201 (203)
+.-|.-+.+|.++|.++.+...+..| ++.|+.-|++.-.+..++.++-|+.-++.+
T Consensus 39 ~~lq~l~~~~~~~G~~~~~~~~~~~~--~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 39 WILQVLALVFAIIGFVAIFINKNRNG--KPHFKSWHSILGLATFVLALLQPLLGFFRF 94 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC--CCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 44467788999999999988766553 588888898877777777777777766544
No 3
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=43.61 E-value=17 Score=29.31 Aligned_cols=13 Identities=62% Similarity=1.009 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhh
Q 028807 156 IGCYLLQEHIRAS 168 (203)
Q Consensus 156 Ia~YLl~qHi~~~ 168 (203)
+|.|=+|||+|++
T Consensus 30 lgLYrlQeHvrks 42 (118)
T PF10167_consen 30 LGLYRLQEHVRKS 42 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999986
No 4
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=42.52 E-value=20 Score=33.86 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=67.3
Q ss_pred hhhhhhhhhhhccCccchhhhhcccch---------------hHHH-HHHHHHHhhcCCCCC----Ccccchhhhhhhhh
Q 028807 74 MLTALLVPYIFFSFPSVLFNFFRGEVG---------------RWIA-FIAVVLRLFFPRHFP----DWLDMPGSLILLLV 133 (203)
Q Consensus 74 i~tslLVPyi~l~~Ps~vf~~~rGe~G---------------~WiA-Flavv~RLFfp~~fP----~~LElP~a~iLLvv 133 (203)
-.++|+|||+++++=..++..++.... .|+. +..-+.=+|+.+.++ -+.-.+.+...++.
T Consensus 70 k~~tLivPyi~f~li~~I~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~FWf~~llfit~l~~~~~a~~~~~~~s~~~~~l 149 (343)
T COG3594 70 KARTLIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNLIAVWLAVSVSLIILIL 149 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhcccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 346899999999998888877766555 2222 222233334433344 45666676666664
Q ss_pred hc----hhhhHhhhccchhhHHHHHHHHHHHHHHHHHhhC-CCcccccCCccchhhHHHHHHHHHHH
Q 028807 134 VA----PSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASG-GFRNSFTQGHGISNTLGIVLLLVYPV 195 (203)
Q Consensus 134 va----P~~~~~~~R~s~~G~vI~L~Ia~YLl~qHi~~~G-g~r~aF~q~~gi~~Ti~Ii~l~v~Pv 195 (203)
++ |..+-..-| ++.+-=. ...+.+..+.|+=-.| .-+..+-+.+..++...++++.+.|-
T Consensus 150 ~gf~~~~~~~~~~~~-~~~~~P~-~l~~~~~a~~~f~~~~~l~~~~~~~~~~~~~~a~vi~l~~~~~ 214 (343)
T COG3594 150 VGFFFIPLSLGSFSR-TLVFFPF-FLLGTLFAKLHFWFGGLLRTYKGLRVNIKSFLAAVIFLAVGLA 214 (343)
T ss_pred HHHHHHHHHHHhhhh-hhccCcH-HHHHHHHHHHHHHHhhhhheeeeehhhHHHHHHHHHHHHHHHH
Confidence 43 222222111 1111111 1224455566665554 35556667777788888888887773
No 5
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.22 E-value=25 Score=32.43 Aligned_cols=45 Identities=33% Similarity=0.491 Sum_probs=36.0
Q ss_pred ccccccccChHHHHHHHHhhHH-HH-HHHHHHhhhhhhhhc---CCCcch
Q 028807 4 LNYLAMKTDDQVAAELISSDFN-EL-KIAAKKLVNDATRLG---GLGFGT 48 (203)
Q Consensus 4 ~~~l~m~t~~~~~~~~i~sd~~-~l-~~aa~kL~~ha~~l~---~~g~~t 48 (203)
--|.+|-..+.++-+.++|+|+ +| .+.|+||+.+|+..| .+|-|.
T Consensus 159 ~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGs 208 (271)
T KOG0173|consen 159 LPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGS 208 (271)
T ss_pred cceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCC
Confidence 3588898888888889999999 55 478999999999665 566554
No 6
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=35.14 E-value=1.4e+02 Score=22.94 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=41.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCCcccccCCccchhhHHHHHHHHHHHHHHHH
Q 028807 144 KDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVL 200 (203)
Q Consensus 144 R~s~~G~vI~L~Ia~YLl~qHi~~~Gg~r~aF~q~~gi~~Ti~Ii~l~v~Pvw~l~~ 200 (203)
+.-|.-..+|.++|..+.+...+..| ++.|+..|++.-.+.+++..+-|+.-++.
T Consensus 38 ~~lq~~a~~~~~~g~~~~~~~~~~~~--~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~ 92 (129)
T smart00665 38 VVLQILALVLGVIGLLAIFISHNESG--IANFYSLHSWLGLAAFVLAGLQWLSGFLR 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccC--CCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999888766554 57799999887777777777777765553
No 7
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=28.21 E-value=66 Score=27.70 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred hhhccchhhHHHHHH---HHHHHHHHHHHhhCC
Q 028807 141 HTLKDSWVGVVICLL---IGCYLLQEHIRASGG 170 (203)
Q Consensus 141 ~~~R~s~~G~vI~L~---Ia~YLl~qHi~~~Gg 170 (203)
++.|=+.+=+++.|+ ++|+|+++|+|.-||
T Consensus 85 d~~~fs~gmaIlnLiLrP~S~~lly~~~~eRGG 117 (159)
T smart00805 85 DTGRFGVGMAILSLLLKPLSCCLVYHMYRERGG 117 (159)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHccC
No 8
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.74 E-value=3.8e+02 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=23.3
Q ss_pred hcCCCCCCcccchhhhhhhhhhchhhhHhhhccchhhHHHHHHHHHHHHHH
Q 028807 113 FFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQE 163 (203)
Q Consensus 113 Ffp~~fP~~LElP~a~iLLvvvaP~~~~~~~R~s~~G~vI~L~Ia~YLl~q 163 (203)
.||+..|...+--.++.+-=..+|..-.+ --.+...+.-.++-.|..+.
T Consensus 275 ~~P~ilps~~~~~~slTi~~aass~~tL~--~m~~~~~i~lpivl~y~~~~ 323 (328)
T PF02322_consen 275 LFPYILPSSIDPAYSLTIWNAASSPYTLK--FMLIVALIGLPIVLPYQAWL 323 (328)
T ss_pred hCceEeecCCCCCCCccHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46777776655444455544444443222 11233334444455555544
No 9
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=24.29 E-value=62 Score=26.01 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHH-HHH
Q 028807 146 SWVGVVICLLIGCYLL-QEH 164 (203)
Q Consensus 146 s~~G~vI~L~Ia~YLl-~qH 164 (203)
|..+++.|+++.+|++ +||
T Consensus 48 S~~~v~~c~~lnaY~l~~eH 67 (102)
T PLN02595 48 TYLGIASCTALAVYVLSKGH 67 (102)
T ss_pred hHHHhHHHHHHHHHHhhhcc
Confidence 3457899999999966 444
No 10
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=23.86 E-value=63 Score=21.01 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 028807 153 CLLIGCYLLQEHIRAS 168 (203)
Q Consensus 153 ~L~Ia~YLl~qHi~~~ 168 (203)
+++|.|-|++.|.+..
T Consensus 9 ~lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSV 24 (30)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhHH
Confidence 6889999999998753
No 11
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=23.77 E-value=3e+02 Score=20.27 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCccchhhhhhhhhhhhccCccchhhhhccc-chh----HHHHHHHHHHhhcCCCCCCcccchhhhh
Q 028807 55 ASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGE-VGR----WIAFIAVVLRLFFPRHFPDWLDMPGSLI 129 (203)
Q Consensus 55 asiaAi~LLildrTnwkTni~tslLVPyi~l~~Ps~vf~~~rGe-~G~----WiAFlavv~RLFfp~~fP~~LElP~a~i 129 (203)
.+...+|.+..+..|.+. +++.-.+....|..+..-.... ... +...+-...|..-.+....+ .+
T Consensus 34 ~~~~~~y~i~r~~~~~~~----a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 103 (159)
T PF13231_consen 34 LTLLLIYLIARRLFGRRA----ALIAALLLALSPMFIFYSASARPDMLLLFFFLLALYAFYRYIKSKKWRWW------IL 103 (159)
T ss_pred HHHHHHHHHHHHHCCchH----HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcchHHH------HH
Confidence 344455666666666553 4444444555564443333211 122 44444455565554442211 11
Q ss_pred hhhhhchhhhHhhhccchhhHHHHHHHHHHHHHHHHHhhCCCcccccCCccchhhHHHHHHHHHHHH
Q 028807 130 LLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVW 196 (203)
Q Consensus 130 LLvvvaP~~~~~~~R~s~~G~vI~L~Ia~YLl~qHi~~~Gg~r~aF~q~~gi~~Ti~Ii~l~v~Pvw 196 (203)
..+..+=... .|.+..-.+ .++.+|++.+ |+.+++......++.+.++...|.|
T Consensus 104 ~~l~~~l~~~---~k~~~~~~~--~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~p~l 157 (159)
T PF13231_consen 104 AGLLLGLAFL---TKYTFLLLI--PALLLYLLLS--------RRRLKRKIFILIAVLIALLVFLPWL 157 (159)
T ss_pred HHHHHHHHHH---HHHHHHHHH--HHHHHHHHHH--------hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 355543333 3344488877 4445554434446677777777765
No 12
>COG4828 Predicted membrane protein [Function unknown]
Probab=23.38 E-value=1e+02 Score=25.22 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhccCccchhhhhcccchhHHHHHHHHHHhhcCCCCCCcccchhh
Q 028807 48 TSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGS 127 (203)
Q Consensus 48 t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~l~~Ps~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a 127 (203)
-+.+.|+.-+.++.+.+.- +|| ++..-++ .=-.-|+-.++=+|-|.|.|+||- +-++. .+
T Consensus 11 l~if~~~fe~v~~l~IiyG--glr-a~~~ifl---~e~~k~p~~~~~iRkelt~ki~fg---LEf~i-----------~a 70 (113)
T COG4828 11 LEIFAVVFEAVSVLLIIYG--GLR-AVAMIFL---REVHKKPEVYESIRKELTNKIAFG---LEFLI-----------AA 70 (113)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHH-HHHHHHH---HHHhcChhhHHHHHHHHHHHHHHH---HHHHH-----------HH
Confidence 4567788777777544432 466 3333333 445678899999999999999974 22333 67
Q ss_pred hhhhhhhchhhhHhhhccchhhHH--HHHHHHHHHHHHHHHh
Q 028807 128 LILLLVVAPSFFAHTLKDSWVGVV--ICLLIGCYLLQEHIRA 167 (203)
Q Consensus 128 ~iLLvvvaP~~~~~~~R~s~~G~v--I~L~Ia~YLl~qHi~~ 167 (203)
-++..+-+|++=-- +..|++ |=.+.+ |.+++.+..
T Consensus 71 dil~T~r~Pt~edL----~~LG~Iv~IRT~Lg-YFL~KEiee 107 (113)
T COG4828 71 DILETARAPTLEDL----SKLGAIVLIRTVLG-YFLSKEIEE 107 (113)
T ss_pred HHHHHHhCccHHHH----HHhhHHHHHHHHHH-HHHHHHHHH
Confidence 77888888876322 233432 334444 555655543
No 13
>KOG4523 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=60 Score=27.64 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhh
Q 028807 156 IGCYLLQEHIRAS 168 (203)
Q Consensus 156 Ia~YLl~qHi~~~ 168 (203)
+|.|-+|||+|++
T Consensus 30 l~LY~iQeHirna 42 (157)
T KOG4523|consen 30 LALYRIQEHIRNA 42 (157)
T ss_pred HHHHHHHHHHHhh
Confidence 5789999999987
No 14
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=22.30 E-value=1.3e+02 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhh
Q 028807 15 VAAELISSDFNELKIAAKKLVNDATR 40 (203)
Q Consensus 15 ~~~~~i~sd~~~l~~aa~kL~~ha~~ 40 (203)
.-.+++.+-+++++..+++.++||..
T Consensus 31 ~ltdi~~~yl~~l~~~~~~~a~~agR 56 (77)
T smart00576 31 TLTDILQSYIQELGRTAHSYAELAGR 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34577889999999999999999754
No 15
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=21.74 E-value=77 Score=31.91 Aligned_cols=36 Identities=33% Similarity=0.741 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCC-CcccccCCccch
Q 028807 147 WVGVVICLLIGCYLLQEHIRASGG-FRNSFTQGHGIS 182 (203)
Q Consensus 147 ~~G~vI~L~Ia~YLl~qHi~~~Gg-~r~aF~q~~gi~ 182 (203)
|.==+|.|+||.+|+++|++..|= +.--|+.+.||.
T Consensus 24 WllPivAl~igawL~~~~~~~~G~~Itl~f~saeGIe 60 (553)
T COG3008 24 WLLPIVALLIGAWLLFQHVQDRGPEITLTFESAEGIE 60 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEecCccccc
Confidence 344478999999999999999963 445566666663
No 16
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=21.29 E-value=2.4e+02 Score=28.72 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=63.8
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhccCccchhhhhc-------------ccchhHHHHHHHHHHhh
Q 028807 47 GTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFR-------------GEVGRWIAFIAVVLRLF 113 (203)
Q Consensus 47 ~t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~l~~Ps~vf~~~r-------------Ge~G~WiAFlavv~RLF 113 (203)
+...+-|-++..++.+......+|.+-+..+++.-...--.|.....+.| +.+|.|++ +.+-++|
T Consensus 133 TGH~~~~~a~~~~~v~~~~g~~~~~~ii~~~~~lG~y~~v~pal~~~~~~~iTg~d~faiGH~~~~g~~~s--~~ig~~~ 210 (602)
T PRK09548 133 TGHIMFQQAGLIAVFYHVLGASMWETVIYGAVLMALYWGISSNIMNKPTQQVTGGAGFSIGHQQQVASWIA--TKIAPKL 210 (602)
T ss_pred ecHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHhHHHHHhcCCCCeEEeehhhHHHHHH--HHHHHHh
Confidence 34566777887777777776778888888887777777777877777766 46778876 6677777
Q ss_pred cCC-CCCCcccchhhhhhhhhhchhhhHhhhccchhhHHHHH
Q 028807 114 FPR-HFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICL 154 (203)
Q Consensus 114 fp~-~fP~~LElP~a~iLLvvvaP~~~~~~~R~s~~G~vI~L 154 (203)
=.+ .=.|.+++|-.+= -+||+.+...+..
T Consensus 211 G~k~~stEdiklPk~Ls------------ffrD~~vs~ai~M 240 (602)
T PRK09548 211 GDKEDSVDDLKLPKWLH------------IFHDSIVATAIVM 240 (602)
T ss_pred CCCcCCHHHhcCCcchh------------HhhhhHHHHHHHH
Confidence 632 3334467765543 2788876655443
No 17
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.42 E-value=3.5e+02 Score=23.37 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHH
Q 028807 17 AELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60 (203)
Q Consensus 17 ~~~i~sd~~~l~~aa~kL~~ha~~l~~~g~~t~~lqWiasiaAi 60 (203)
...+++-...++.+.+||..|.-+-+| .+.|+..+..+
T Consensus 201 ~~~~d~n~~~l~~~~~rl~~~~~~~~~------~~~~~~i~~v~ 238 (251)
T PF09753_consen 201 EEGLDRNLSSLKRESKRLKEHSSKSWG------CWTWLMIFVVI 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHH
Confidence 344566666677777788777655332 67777554433
No 18
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.01 E-value=96 Score=27.86 Aligned_cols=76 Identities=28% Similarity=0.384 Sum_probs=37.6
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCccch----hhhhhhhhhhhccCccchhh----hhcccchhHH-------HHHHHHHH
Q 028807 47 GTSFLKWVASFAAIYLLILDRTNWRSN----MLTALLVPYIFFSFPSVLFN----FFRGEVGRWI-------AFIAVVLR 111 (203)
Q Consensus 47 ~t~~lqWiasiaAi~LLildrTnwkTn----i~tslLVPyi~l~~Ps~vf~----~~rGe~G~Wi-------AFlavv~R 111 (203)
+++.++=+.+.-|.|-+---|.-+|+- ++..+.+|....-.|-.+.- ++..-.|..+ +|-..++|
T Consensus 84 ~~t~l~i~~~~laaYalar~~f~g~~~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~glil~~~~~~~pf~ifl~~ 163 (281)
T COG0395 84 GSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLR 163 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHhHHHHHHHH
Confidence 355566666666666655544544431 12223344444444433221 2222222222 33445778
Q ss_pred hhcCCCCCCccc
Q 028807 112 LFFPRHFPDWLD 123 (203)
Q Consensus 112 LFfp~~fP~~LE 123 (203)
=||- .+|+|+|
T Consensus 164 ~ff~-~iP~ele 174 (281)
T COG0395 164 QFFR-TIPKELE 174 (281)
T ss_pred HHHH-hCCHHHH
Confidence 8885 6999986
Done!