Query 028807
Match_columns 203
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 03:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3y_B Voltage-dependent L-typ 28.3 26 0.00088 21.2 1.4 12 157-168 4-15 (26)
2 1bde_A VPR protein; AIDS, HIV, 25.2 32 0.0011 22.1 1.6 27 144-172 3-29 (35)
3 1z65_A PRPLP, prion-like prote 23.6 41 0.0014 21.0 1.7 17 152-168 8-24 (30)
4 2be6_D Voltage-dependent L-typ 21.2 48 0.0017 21.5 1.8 13 155-167 11-23 (37)
5 3dvk_B Voltage-dependent R-typ 17.2 73 0.0025 18.7 1.8 13 156-168 7-19 (23)
6 3k35_A NAD-dependent deacetyla 14.9 70 0.0024 28.3 1.9 32 18-50 28-59 (318)
7 1k04_A FADK 1, focal adhesion 13.6 1.1E+02 0.0038 25.1 2.7 23 12-34 92-114 (162)
8 1ma3_A SIR2-AF2, transcription 12.2 66 0.0023 26.6 1.0 26 23-49 4-29 (253)
9 4h4g_A (3R)-hydroxymyristoyl-[ 12.1 86 0.003 24.2 1.6 19 112-130 54-72 (160)
10 3riy_A NAD-dependent deacetyla 12.0 59 0.002 27.4 0.6 26 23-49 10-35 (273)
No 1
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=28.35 E-value=26 Score=21.24 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 028807 157 GCYLLQEHIRAS 168 (203)
Q Consensus 157 a~YLl~qHi~~~ 168 (203)
+-||+|+|+|+-
T Consensus 4 at~LIqdyfRkf 15 (26)
T 2f3y_B 4 ATFLIQEYFRKF 15 (26)
T ss_pred hhhhHHHHHHHH
Confidence 579999999974
No 2
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=25.24 E-value=32 Score=22.06 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=20.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCCc
Q 028807 144 KDSWVGVVICLLIGCYLLQEHIRASGGFR 172 (203)
Q Consensus 144 R~s~~G~vI~L~Ia~YLl~qHi~~~Gg~r 172 (203)
-|||.|+---.=|---++|-|||. |++
T Consensus 3 GDTw~GveaiiriLQq~Lf~HfR~--GC~ 29 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQLLFIHFRI--GCR 29 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhc--cCc
Confidence 468888776666777788999987 554
No 3
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=23.62 E-value=41 Score=20.97 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028807 152 ICLLIGCYLLQEHIRAS 168 (203)
Q Consensus 152 I~L~Ia~YLl~qHi~~~ 168 (203)
-+++|.|-|++.|.+..
T Consensus 8 ~wlai~c~LLfs~Ls~v 24 (30)
T 1z65_A 8 WWVAILCMLLASHLSTV 24 (30)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHhhHHHH
Confidence 37899999999998764
No 4
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=21.19 E-value=48 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q 028807 155 LIGCYLLQEHIRA 167 (203)
Q Consensus 155 ~Ia~YLl~qHi~~ 167 (203)
.-+-||+|+|||+
T Consensus 11 fYatfLIQdyFRk 23 (37)
T 2be6_D 11 FYATFLIQEYFRK 23 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=17.23 E-value=73 Score=18.69 Aligned_cols=13 Identities=8% Similarity=0.237 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 028807 156 IGCYLLQEHIRAS 168 (203)
Q Consensus 156 Ia~YLl~qHi~~~ 168 (203)
=|.+|+|+|+|+.
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4778999999874
No 6
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=14.90 E-value=70 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhcCCCcchhh
Q 028807 18 ELISSDFNELKIAAKKLVNDATRLGGLGFGTSF 50 (203)
Q Consensus 18 ~~i~sd~~~l~~aa~kL~~ha~~l~~~g~~t~~ 50 (203)
+.++++++++....++ +++.+.+.|.|.+|+.
T Consensus 28 ~~l~~~i~~l~~~i~~-a~~ivvlTGAGISteS 59 (318)
T 3k35_A 28 EELERKVWELARLVWQ-SSSVVFHTGAGISTAS 59 (318)
T ss_dssp HHHHHHHHHHHHHHHH-CSCEEEEECGGGSGGG
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEeccccChhh
Confidence 4467788888777766 6777888899998773
No 7
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=13.61 E-value=1.1e+02 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHh
Q 028807 12 DDQVAAELISSDFNELKIAAKKL 34 (203)
Q Consensus 12 ~~~~~~~~i~sd~~~l~~aa~kL 34 (203)
+-+.++.++++|+.||..+.|+.
T Consensus 92 EVema~k~L~kDM~eLis~mkla 114 (162)
T 1k04_A 92 EIEMAQKLLNSDLGELINKMKLA 114 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567889999999999988774
No 8
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=12.21 E-value=66 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCcchh
Q 028807 23 DFNELKIAAKKLVNDATRLGGLGFGTS 49 (203)
Q Consensus 23 d~~~l~~aa~kL~~ha~~l~~~g~~t~ 49 (203)
+++++....++ +++.+.+.|.|.+++
T Consensus 4 ~i~~l~~~l~~-a~~ivv~tGAGiS~~ 29 (253)
T 1ma3_A 4 EIRKAAEILAK-SKHAVVFTGAGISAE 29 (253)
T ss_dssp HHHHHHHHHHH-CSSEEEEECGGGSCC
T ss_pred HHHHHHHHHHh-CCcEEEEEchhhhHh
Confidence 34444444443 566678889999876
No 9
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=12.13 E-value=86 Score=24.25 Aligned_cols=19 Identities=53% Similarity=0.936 Sum_probs=16.5
Q ss_pred hhcCCCCCCcccchhhhhh
Q 028807 112 LFFPRHFPDWLDMPGSLIL 130 (203)
Q Consensus 112 LFfp~~fP~~LElP~a~iL 130 (203)
.||..|||+.=-+|+.+++
T Consensus 54 ~ff~gHFp~~PvmPGvL~i 72 (160)
T 4h4g_A 54 PFFTGHFPKRPVMPGVLII 72 (160)
T ss_dssp GGGGTSCTTSCCCCHHHHH
T ss_pred ccccCCCCCCCcCcHHHHH
Confidence 5889999999999998765
No 10
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=12.02 E-value=59 Score=27.43 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCcchh
Q 028807 23 DFNELKIAAKKLVNDATRLGGLGFGTS 49 (203)
Q Consensus 23 d~~~l~~aa~kL~~ha~~l~~~g~~t~ 49 (203)
|++++....++ +++.+++.|.|.+|+
T Consensus 10 ~i~~l~~~l~~-a~~ivvlTGAGiSt~ 35 (273)
T 3riy_A 10 SMADFRKFFAK-AKHIVIISGAGVSAE 35 (273)
T ss_dssp CHHHHHHHHHH-CSEEEEEECGGGTGG
T ss_pred HHHHHHHHHHh-CCcEEEEECcccchh
Confidence 34444444333 455678889999876
Done!