BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028808
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 287 bits (734), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 152/171 (88%)
Query: 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS 92
A VA G+DI+SAA +VSLQKARTWDEGV S F+TTP+ DIFK KKVVIFGLPGAYTGVCS
Sbjct: 1 AKVATGTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCS 60
Query: 93 NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152
++HVP YK+NIDKFKAKG+DSVICVA+NDPY +N WAEK+QAKD IEFYGDFDGSFHKSL
Sbjct: 61 SKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSL 120
Query: 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
+L DLSA LLG RSERWSAYV DG++KALNVEE+PS +KVSG + ILGQI
Sbjct: 121 ELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETILGQI 171
>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|B Chain B, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|C Chain C, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
Length = 184
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 79/129 (61%)
Query: 72 IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEK 131
+FKGK+VV+F +PGA+T CS H+P Y N D A+G+D + VAVND +V WA
Sbjct: 53 LFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVXGAWATH 112
Query: 132 LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKM 191
I F D++ +F K++ DLSA LG RS+R+S VEDG +KALN+EE+P +
Sbjct: 113 SGGXGKIHFLSDWNAAFTKAIGXEIDLSAGTLGIRSKRYSXLVEDGVVKALNIEESPGQA 172
Query: 192 KVSGGDVIL 200
SG L
Sbjct: 173 TASGAAAXL 181
>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
pdb|4F82|B Chain B, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
Length = 176
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 58 EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV 117
EG + ++D GK+VVIFGLPGA+T CS QHVP Y + ++ +A GID + CV
Sbjct: 30 EGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCV 89
Query: 118 AVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 177
+VND +VM W L + D +F +L L +DLSA +G RS R++ ++ G
Sbjct: 90 SVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVIDGG 149
Query: 178 RIKALNVEEAPSKMKVSGGDVILGQI 203
+K L V EAP K +VS +L +
Sbjct: 150 VVKTLAV-EAPGKFEVSDAASVLATL 174
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 72/117 (61%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ + GKKV++FG+PGA+T CS +HVP + + K+KG+ ++C++VNDP+VM W
Sbjct: 29 VHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAW 88
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
A+ ++F D ++ +L L DL LG RS R++ V+D ++KA N+E
Sbjct: 89 AKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIE 145
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 64 FATTP-----IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA 118
F TP + ++F GKK V+F +PGA+T S H+P Y KG+D + C+A
Sbjct: 15 FGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMA 74
Query: 119 VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGR 178
VND +VM+ W + A D ++ D G+F K++D+ DLSA L RS+R+S +EDG
Sbjct: 75 VNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGV 134
Query: 179 IKALNVEEAPSKMKVSGGDVILGQI 203
+ +NVE + S IL Q+
Sbjct: 135 VTKVNVEPDGKGLTCSLAPNILSQL 159
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T CS H+P + + KAKG+ V C++VND +V W
Sbjct: 37 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 96
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 97 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 156
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 157 DGTGLTCSLAPNIISQL 173
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T CS H+P + + KAKG+ V C++VND +V W
Sbjct: 36 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 96 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 156 DGTGLTCSLAPNIISQL 172
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T CS H+P + + KAKG+ V C++VND +V W
Sbjct: 25 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 84
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 85 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 144
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 145 DGTGLTCSLAPNIISQL 161
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T CS H+P + + KAKG+ V C++VND +V W
Sbjct: 36 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 96 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 156 DGTGLTXSLAPNIISQL 172
>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
pdb|2XHF|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
Length = 171
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNG 127
PI D+F+G+K ++F + GA+ SN H+P Y + DKFK +G ++ C+AVNDP+VM
Sbjct: 35 PIHDVFRGRKGILFSVVGAFVP-GSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAA 93
Query: 128 WAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
W + + + I D G F ++L D S L RS R++ ++D +I++++ E
Sbjct: 94 WGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTE 151
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T CS H+P + + KAKG+ V ++VND +V W
Sbjct: 37 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVASLSVNDAFVTGEW 96
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 97 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 156
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 157 DGTGLTCSLAPNIISQL 173
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
+ ++FKGKK V+FG+PGA+T S H+P + + KAKG+ V C++VND +V W
Sbjct: 36 LAELFKGKKGVLFGVPGAFTPGSSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
+A+ + D G+F K DL D S ++ G R +R+S V+DG +KALNVE
Sbjct: 96 GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
+ + S I+ Q+
Sbjct: 156 DGTGLTCSLAPNIISQL 172
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
++F K V++F LPGA+T CS+ H+P Y FK G+D ++ V+VND +V N W E
Sbjct: 29 ELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVXNAWKE 88
Query: 131 KLQAKDVIEFYGDFDGSFHKSLD--LGK-DLSAALLGPRSERWSAYVEDGRIKALNVE-- 185
++++ I F D +G F + +GK DL G RS R+S V++G ++ +E
Sbjct: 89 DEKSEN-ISFIPDGNGEFTEGXGXLVGKEDLG---FGKRSWRYSXLVKNGVVEKXFIEPN 144
Query: 186 EAPSKMKVSGGDVIL 200
E KVS D L
Sbjct: 145 EPGDPFKVSDADTXL 159
>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
pdb|1XIY|B Chain B, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
Length = 182
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 58 EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVIC 116
+G ++F + ++F KK+++ LPGA+T S + +P Y+ D F K D + C
Sbjct: 26 DGSPNDFTSIDTHELFNNKKILLISLPGAFTPTXSTKMIPGYEEEYDYFIKENNFDDIYC 85
Query: 117 VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVED 176
+ ND YV+ W + + K I++ D + SF S+++ D S +G R R+ A VE+
Sbjct: 86 ITNNDIYVLKSWFKSMDIKK-IKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVEN 144
Query: 177 G 177
Sbjct: 145 N 145
>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSR|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
Length = 184
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
K I + KKV+I G P A++ C+ H+P Y N +D+ K K +D VI V V++P+ W
Sbjct: 49 KLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 108
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
A+ L KD I+F D +F KS +G +L+ S RW+ VE+G + E
Sbjct: 109 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 166
Query: 187 AP-SKMKVSGGDVILGQI 203
P + + VS + +L +
Sbjct: 167 NPGTDVTVSSVESVLAHL 184
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
K I + KKV+I G P A++ C+ H+P Y N +D+ K K +D VI V V++P+ W
Sbjct: 64 KLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 123
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
A+ L KD I+F D +F KS +G +L+ S RW+ VE+G + E
Sbjct: 124 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 181
Query: 187 AP-SKMKVSGGDVILGQI 203
P + + VS + +L +
Sbjct: 182 NPGTDVTVSSVESVLAHL 199
>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 176
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
K I + KKV+I G P A++ + H+P Y N +D+ K K +D VI V V++P+ W
Sbjct: 41 KLISENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 100
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
A+ L KD I+F D +F KS +G +L+ S RW+ VE+G + E
Sbjct: 101 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 158
Query: 187 AP-SKMKVSGGDVILGQI 203
P + + VS + +L +
Sbjct: 159 NPGTDVTVSSVESVLAHL 176
>pdb|3P7X|A Chain A, Crystal Structure Of An Atypical Two-Cysteine
Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus
Nctc8325
pdb|3P7X|B Chain B, Crystal Structure Of An Atypical Two-Cysteine
Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus
Nctc8325
pdb|3P7X|C Chain C, Crystal Structure Of An Atypical Two-Cysteine
Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus
Nctc8325
pdb|3P7X|D Chain D, Crystal Structure Of An Atypical Two-Cysteine
Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus
Nctc8325
Length = 166
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
+ GKK +I +P TGVC Q + K N D K +GI V+ ++ + P+ W
Sbjct: 44 YAGKKKLISVVPSIDTGVCDQQ---TRKFNSDASKEEGI--VLTISADLPFAQKRWCASA 98
Query: 133 QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
+VI S H+ L G++ + R + +V D K + E
Sbjct: 99 GLDNVITL------SDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE 145
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQ 133
+GK V+F P +T VC+ + V S+ + F+ G+D +I ++V+ + W E ++
Sbjct: 33 QGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWKEWIE 90
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQ 133
+GK V+F P +T VC+ + V S+ + F+ G+D +I ++V+ + W E ++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWKEWIE 89
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQ 133
+GK V+F P +T VC+ + V S+ + F+ G+D +I ++V+ + W E ++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWKEWIE 89
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQ 133
+GK V+F P +T VC+ + V S+ + F+ G+D +I ++V+ + W E ++
Sbjct: 32 QGKWFVLFSHPADFTPVCTTEFV-SFARRYEDFQRLGVD-LIGLSVDSVFSHIKWKEWIE 89
>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 60 VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116
++ F +KD ++GK VV+F P +T VC + + ++ + +++F ++ + C
Sbjct: 52 INGEFKEICLKD-YRGKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC 106
>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|B Chain B, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|C Chain C, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|D Chain D, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|E Chain E, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|F Chain F, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|G Chain G, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|H Chain H, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|I Chain I, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|J Chain J, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
Length = 222
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 60 VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116
++ F +KD ++GK VV+F P +T VC + + ++ + +++F ++ + C
Sbjct: 55 INGEFKEICLKD-YRGKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC 109
>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|B Chain B, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|C Chain C, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|E Chain E, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|F Chain F, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|G Chain G, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|H Chain H, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|I Chain I, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|J Chain J, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|K Chain K, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|L Chain L, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|M Chain M, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|N Chain N, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|O Chain O, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|P Chain P, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|Q Chain Q, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|R Chain R, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|S Chain S, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|T Chain T, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 60 VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116
++ F +KD ++GK VV+F P +T VC + + ++ + +++F ++ + C
Sbjct: 52 INGEFKEICLKD-YRGKYVVLFFYPADFTFVCPTE-IIAFSDQVEEFNSRNCQVIAC 106
>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
Length = 164
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 58 EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV 117
E V ++ I FKGK VV+ P A+T V S + + ++++++ KF VI +
Sbjct: 12 ELVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSV-STKEMSTFRDSMAKFNEVNA-VVIGI 69
Query: 118 AVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVED- 176
+V+ P+ + E Q K DF+ K+ + +L L G + S +V D
Sbjct: 70 SVDPPFSNKAFKE--QNKINFTIVSDFNREAVKAYGVAGEL-PILKGYVLAKRSVFVIDK 126
Query: 177 -GRIKALNVEEAPSK 190
G ++ V E P+K
Sbjct: 127 NGIVRYKWVSEDPTK 141
>pdb|2DSM|A Chain A, Nmr Structure Of Bacillus Subtilis Protein Yqai, Northeast
Structural Genomics Target Sr450
pdb|2DSM|B Chain B, Nmr Structure Of Bacillus Subtilis Protein Yqai, Northeast
Structural Genomics Target Sr450
Length = 72
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 119 VNDPYVMNGWAEKLQAKDV-IEFYGD 143
V +P V+N W +KL DV I+FYGD
Sbjct: 2 VENPMVINNWHDKLTETDVQIDFYGD 27
>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
Length = 240
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 60 VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119
++ F + D ++GK +V F P +T VC + + ++ + + +F+A + V C +V
Sbjct: 63 INGEFKELKLSD-YRGKYLVFFFYPLDFTFVCPTE-IIAFSDRVHEFRAINTEVVAC-SV 119
Query: 120 NDPYVMNGW 128
+ + W
Sbjct: 120 DSQFTHLAW 128
>pdb|1XXG|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin G
Length = 233
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 54 RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV 90
++++E V + T + + +KGKKV IFG+P YT +
Sbjct: 57 KSYNE-VKTELENTELANNYKGKKVDIFGVPYFYTCI 92
>pdb|3MC0|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A Mouse T-Cell Receptor Beta Chain
pdb|3MC0|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A Mouse T-Cell Receptor Beta Chain
Length = 239
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 54 RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV 90
++++E V + T + + +KGKKV IFG+P YT +
Sbjct: 57 KSYNE-VKTELENTELANNYKGKKVDIFGVPYFYTCI 92
>pdb|3OWE|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|F Chain F, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|H Chain H, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|J Chain J, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|L Chain L, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|N Chain N, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|P Chain P, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
Length = 234
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 54 RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV 90
++++E V + T + + +KGKKV IFG+P YT +
Sbjct: 58 KSYNE-VKTELENTELANNYKGKKVDIFGVPYFYTCI 93
>pdb|1PSQ|A Chain A, Structure Of A Probable Thiol Peroxidase From
Streptococcus Pneumoniae
pdb|1PSQ|B Chain B, Structure Of A Probable Thiol Peroxidase From
Streptococcus Pneumoniae
Length = 163
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDS--VICVAVNDPYVMNGW 128
F GKK V+ +P TG+CS Q +F + G+D+ V+ V+ + P+ W
Sbjct: 40 FDGKKKVLSVVPSIDTGICSTQ--------TRRFNEELAGLDNTVVLTVSXDLPFAQKRW 91
Query: 129 AEKLQAKDVIEFYGDFDGSFHK 150
+ I FD SF +
Sbjct: 92 CGAEGLDNAIXLSDYFDHSFGR 113
>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|B Chain B, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|C Chain C, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|D Chain D, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|E Chain E, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
Length = 219
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWA 129
+KGK VV+F P +T VC + V ++ +++ +F + + C +++ Y W
Sbjct: 54 YKGKWVVLFFYPLDFTFVCPTE-VIAFSDSVSRFNELNCEVLAC-SIDSEYAHLQWT 108
>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Sulfolobus Tokodaii
pdb|4G2E|A Chain A, Crystal Structure Of A Dimeric Prxq From Sulfolobus
Tokodaii
Length = 157
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC-VAVNDPYVMNGWAE 130
KGK VV+ P A+T VC+ + ++++++ KF +++V+ ++V+ P+ + E
Sbjct: 28 LKGKVVVLAFYPAAFTQVCTKEMC-TFRDSMAKFNQ--VNAVVLGISVDPPFSNKAFKE 83
>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|B Chain B, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|C Chain C, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|D Chain D, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|E Chain E, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|F Chain F, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|G Chain G, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|H Chain H, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|I Chain I, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|J Chain J, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|K Chain K, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|L Chain L, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
Length = 220
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 60 VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119
VS F + D FKGK +V+F P +T VC + + ++ + +F + V+ V+V
Sbjct: 42 VSGEFKEISLDD-FKGKYLVLFFYPLDFTFVCPTE-IIAFSDKASEFHDVNCE-VVAVSV 98
Query: 120 NDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL--DLGKDLSAALLGPRSERWSAYVED- 176
+ + W + + G + + L + +D L GP ++ D
Sbjct: 99 DSHFSHLAWINTPRKNGGL---GHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDP 155
Query: 177 -GRIKALNVEEAP 188
G IK L+V + P
Sbjct: 156 NGVIKHLSVNDLP 168
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 24/107 (22%)
Query: 7 ILKRSSPYAIRS----------VIDSLRIPTSSRAYASVAVGSDIVSAAQDVS------- 49
++KR P IRS V+D + + R G D+VS A++VS
Sbjct: 289 LIKRYYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDN 348
Query: 50 ------LQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV 90
L + TW+ G+S D K K+VV F L AY +
Sbjct: 349 MLVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDF-LNAAYKEI 394
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 24/107 (22%)
Query: 7 ILKRSSPYAIRS----------VIDSLRIPTSSRAYASVAVGSDIVSAAQDVS------- 49
++KR P IRS V+D + + R G D+VS A++VS
Sbjct: 304 LIKRYYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDN 363
Query: 50 ------LQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV 90
L + TW+ G+S D K K+VV F L AY +
Sbjct: 364 MLVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDF-LNAAYKEI 409
>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|B Chain B, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|C Chain C, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|D Chain D, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|E Chain E, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|F Chain F, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|G Chain G, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|H Chain H, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|I Chain I, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|J Chain J, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
Length = 202
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWA 129
+KGK +V+F P +T VC + + + + + +F G + + C +++ Y W
Sbjct: 34 YKGKWLVLFFYPMDFTFVCPTE-ICQFSDRVKEFSDIGCEVLAC-SMDSEYSHLAWT 88
>pdb|2J4X|A Chain A, Streptococcus Dysgalactiae-Derived Mitogen (Sdm)
Length = 213
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 51 QKARTWDEG-----VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQH 95
+K R WD+ +SSN + + + ++V I+ L +Y+ +C Q+
Sbjct: 40 EKTRVWDDDNYNKVISSNVSPAQERRFKEEEEVDIYALIKSYSVICKEQY 89
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 73 FKGKKVVIFGLPGAYTGVCSNQHV 96
FKGKK+ +FG+ +Y G C+ +++
Sbjct: 57 FKGKKLDVFGI--SYNGQCNTKYI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,976,717
Number of Sequences: 62578
Number of extensions: 254760
Number of successful extensions: 757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 50
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)