Query 028808
Match_columns 203
No_of_seqs 210 out of 1151
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 5.8E-38 1.3E-42 247.3 15.0 149 33-203 2-152 (157)
2 cd03013 PRX5_like Peroxiredoxi 100.0 4.2E-36 9.2E-41 237.5 16.1 154 37-201 1-155 (155)
3 COG0678 AHP1 Peroxiredoxin [Po 100.0 4.4E-32 9.6E-37 209.6 15.8 163 33-203 1-165 (165)
4 PRK10382 alkyl hydroperoxide r 100.0 2.3E-31 4.9E-36 216.7 15.3 146 35-203 2-152 (187)
5 PTZ00137 2-Cys peroxiredoxin; 100.0 1.1E-30 2.3E-35 222.2 16.4 154 25-202 58-220 (261)
6 PRK13191 putative peroxiredoxi 100.0 7.3E-31 1.6E-35 218.0 14.7 144 34-202 6-156 (215)
7 PRK13189 peroxiredoxin; Provis 100.0 1.6E-30 3.5E-35 216.8 15.3 146 33-200 7-159 (222)
8 PRK13599 putative peroxiredoxi 100.0 1.5E-30 3.3E-35 216.1 14.9 142 36-202 3-151 (215)
9 COG0450 AhpC Peroxiredoxin [Po 100.0 1.5E-30 3.3E-35 209.8 14.2 151 33-201 1-158 (194)
10 KOG0541 Alkyl hydroperoxide re 100.0 2.3E-30 5E-35 201.1 13.7 168 28-203 2-171 (171)
11 PRK13190 putative peroxiredoxi 100.0 3.4E-30 7.4E-35 211.9 15.2 146 34-201 1-151 (202)
12 cd03016 PRX_1cys Peroxiredoxin 100.0 1.4E-29 3.1E-34 208.3 14.5 141 37-202 1-149 (203)
13 TIGR03137 AhpC peroxiredoxin. 100.0 1.9E-29 4.2E-34 205.0 15.2 144 36-203 3-152 (187)
14 PRK15000 peroxidase; Provision 100.0 5E-29 1.1E-33 204.8 15.0 149 35-202 2-157 (200)
15 PRK00522 tpx lipid hydroperoxi 100.0 3E-28 6.4E-33 194.7 15.4 145 34-203 17-165 (167)
16 cd03014 PRX_Atyp2cys Peroxired 100.0 9.1E-28 2E-32 185.7 14.7 140 36-201 1-142 (143)
17 cd03018 PRX_AhpE_like Peroxire 100.0 1.1E-27 2.5E-32 185.8 14.2 144 35-201 1-148 (149)
18 cd03015 PRX_Typ2cys Peroxiredo 99.9 4.9E-27 1.1E-31 188.1 15.6 145 37-203 1-153 (173)
19 PF08534 Redoxin: Redoxin; In 99.9 2.4E-27 5.3E-32 183.7 13.3 142 36-200 1-146 (146)
20 PTZ00253 tryparedoxin peroxida 99.9 2.9E-27 6.2E-32 193.9 13.9 148 33-202 4-159 (199)
21 PRK09437 bcp thioredoxin-depen 99.9 7.4E-27 1.6E-31 183.1 14.9 149 33-203 2-152 (154)
22 cd02970 PRX_like2 Peroxiredoxi 99.9 3.3E-27 7.2E-32 182.3 11.6 128 45-185 2-148 (149)
23 cd03017 PRX_BCP Peroxiredoxin 99.9 2.3E-26 4.9E-31 176.6 14.1 137 45-201 3-140 (140)
24 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.4E-26 2.9E-31 173.9 12.5 123 37-182 1-124 (124)
25 cd02971 PRX_family Peroxiredox 99.9 4.7E-26 1E-30 174.6 14.5 136 45-199 2-139 (140)
26 KOG0855 Alkyl hydroperoxide re 99.9 5.5E-25 1.2E-29 173.2 13.0 148 33-201 61-209 (211)
27 KOG0852 Alkyl hydroperoxide re 99.9 1.4E-24 3E-29 171.9 11.9 150 35-202 4-159 (196)
28 PLN02412 probable glutathione 99.9 9.5E-25 2.1E-29 174.5 9.8 127 45-186 9-150 (167)
29 cd00340 GSH_Peroxidase Glutath 99.9 1.5E-24 3.3E-29 170.2 9.0 126 45-186 2-142 (152)
30 PTZ00256 glutathione peroxidas 99.9 2E-24 4.4E-29 174.9 8.7 129 45-187 20-168 (183)
31 PTZ00056 glutathione peroxidas 99.9 1.1E-23 2.4E-28 173.0 12.8 131 33-186 11-164 (199)
32 TIGR02540 gpx7 putative glutat 99.9 1.1E-23 2.5E-28 165.3 9.7 122 46-186 3-139 (153)
33 PLN02399 phospholipid hydroper 99.9 2.8E-23 6.2E-28 174.5 10.7 133 35-186 73-220 (236)
34 cd03012 TlpA_like_DipZ_like Tl 99.9 2.8E-23 6E-28 157.9 9.4 105 65-186 14-125 (126)
35 PRK15412 thiol:disulfide inter 99.9 3.9E-23 8.5E-28 167.5 10.2 124 33-187 37-163 (185)
36 cd02969 PRX_like1 Peroxiredoxi 99.9 4.2E-22 9.1E-27 158.9 12.8 117 45-186 4-129 (171)
37 TIGR02661 MauD methylamine deh 99.9 7.5E-22 1.6E-26 160.7 12.1 131 34-202 45-177 (189)
38 TIGR00385 dsbE periplasmic pro 99.9 4E-22 8.6E-27 159.8 10.1 125 31-186 30-157 (173)
39 PRK03147 thiol-disulfide oxido 99.9 1.1E-21 2.3E-26 155.7 12.4 137 32-202 32-170 (173)
40 cd02968 SCO SCO (an acronym fo 99.9 1.2E-21 2.5E-26 150.7 11.2 125 45-184 2-141 (142)
41 cd02967 mauD Methylamine utili 99.9 5.6E-21 1.2E-25 141.8 11.7 111 46-184 1-113 (114)
42 KOG0854 Alkyl hydroperoxide re 99.9 3.9E-21 8.4E-26 152.6 11.3 149 33-201 4-162 (224)
43 cd03010 TlpA_like_DsbE TlpA-li 99.9 4.4E-21 9.5E-26 145.4 10.8 116 44-186 2-120 (127)
44 COG2077 Tpx Peroxiredoxin [Pos 99.8 1.3E-20 2.9E-25 146.1 10.9 142 25-187 6-151 (158)
45 TIGR01626 ytfJ_HI0045 conserve 99.8 5.8E-20 1.3E-24 149.0 11.7 125 33-186 21-166 (184)
46 cd03008 TryX_like_RdCVF Trypar 99.8 4E-20 8.7E-25 145.0 8.5 105 65-184 16-130 (146)
47 PRK14018 trifunctional thiored 99.8 2.8E-19 6E-24 164.7 13.7 133 34-201 31-170 (521)
48 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 2E-18 4.4E-23 129.6 12.8 108 46-185 1-111 (123)
49 cd02966 TlpA_like_family TlpA- 99.8 1.3E-18 2.7E-23 126.5 10.5 112 47-184 1-115 (116)
50 PLN02919 haloacid dehalogenase 99.7 5E-18 1.1E-22 168.2 10.8 127 33-187 389-523 (1057)
51 cd03009 TryX_like_TryX_NRX Try 99.7 3.4E-18 7.3E-23 130.3 6.4 104 65-184 9-117 (131)
52 cd02964 TryX_like_family Trypa 99.7 9.1E-18 2E-22 128.6 8.8 103 65-185 8-118 (132)
53 PRK10606 btuE putative glutath 99.7 1.3E-16 2.7E-21 129.6 12.1 84 45-144 5-97 (183)
54 PRK13728 conjugal transfer pro 99.7 9.2E-17 2E-21 129.9 10.7 100 45-186 55-157 (181)
55 PF13905 Thioredoxin_8: Thiore 99.5 3.9E-15 8.5E-20 107.1 4.2 91 75-179 1-95 (95)
56 TIGR02738 TrbB type-F conjugat 99.5 7.5E-14 1.6E-18 110.3 7.7 103 65-201 45-150 (153)
57 TIGR02740 TraF-like TraF-like 99.2 1.5E-11 3.2E-16 105.6 4.5 139 4-185 109-249 (271)
58 cd02950 TxlA TRX-like protein 99.2 2.1E-11 4.5E-16 95.0 4.6 86 66-187 10-97 (142)
59 cd02985 TRX_CDSP32 TRX family, 99.2 1.8E-10 3.8E-15 84.7 8.5 78 74-188 14-92 (103)
60 PF02630 SCO1-SenC: SCO1/SenC; 99.1 8.2E-10 1.8E-14 88.8 12.0 125 45-184 32-172 (174)
61 cd02999 PDI_a_ERp44_like PDIa 99.0 2.1E-09 4.6E-14 78.7 8.5 74 73-185 16-89 (100)
62 cd02963 TRX_DnaJ TRX domain, D 99.0 2.7E-09 5.8E-14 79.5 9.1 89 74-203 23-111 (111)
63 KOG2501 Thioredoxin, nucleored 99.0 1.4E-09 3.1E-14 85.7 7.0 107 65-185 23-134 (157)
64 PF00837 T4_deiodinase: Iodoth 99.0 2.6E-09 5.7E-14 89.4 8.4 138 33-202 71-235 (237)
65 COG0386 BtuE Glutathione perox 98.9 1.9E-08 4.1E-13 78.9 10.6 122 46-185 6-145 (162)
66 cd02948 TRX_NDPK TRX domain, T 98.9 4.9E-09 1.1E-13 76.7 6.7 74 75-187 17-91 (102)
67 cd02951 SoxW SoxW family; SoxW 98.8 2.6E-09 5.7E-14 80.6 4.1 88 74-186 12-105 (125)
68 cd02956 ybbN ybbN protein fami 98.8 1.5E-08 3.2E-13 72.7 7.3 74 74-185 11-84 (96)
69 COG1999 Uncharacterized protei 98.7 2.9E-07 6.3E-12 76.2 12.4 126 47-186 49-190 (207)
70 PRK09381 trxA thioredoxin; Pro 98.7 6.3E-08 1.4E-12 71.1 7.4 73 77-186 22-94 (109)
71 PF05988 DUF899: Bacterial pro 98.7 2.3E-07 5.1E-12 76.4 11.0 138 24-186 32-175 (211)
72 cd02994 PDI_a_TMX PDIa family, 98.7 7.2E-08 1.6E-12 69.8 6.6 75 71-184 13-87 (101)
73 PRK10996 thioredoxin 2; Provis 98.7 6E-08 1.3E-12 75.2 6.4 86 76-202 52-137 (139)
74 cd02954 DIM1 Dim1 family; Dim1 98.6 1.7E-07 3.7E-12 70.6 7.4 73 77-186 15-87 (114)
75 cd02997 PDI_a_PDIR PDIa family 98.6 1.6E-07 3.4E-12 67.8 7.0 88 74-203 16-104 (104)
76 cd02949 TRX_NTR TRX domain, no 98.6 2.3E-07 5E-12 67.0 7.4 74 76-186 13-86 (97)
77 KOG0910 Thioredoxin-like prote 98.6 1E-07 2.2E-12 74.7 5.6 75 77-188 62-136 (150)
78 PF13911 AhpC-TSA_2: AhpC/TSA 98.6 6.5E-07 1.4E-11 66.8 9.8 84 99-185 2-113 (115)
79 cd02962 TMX2 TMX2 family; comp 98.6 2.7E-07 5.9E-12 72.9 8.1 81 77-187 48-128 (152)
80 PF13098 Thioredoxin_2: Thiore 98.6 2.1E-08 4.6E-13 73.7 1.5 104 74-203 4-112 (112)
81 cd02953 DsbDgamma DsbD gamma f 98.6 1.3E-07 2.8E-12 69.0 5.7 78 74-185 10-92 (104)
82 cd03005 PDI_a_ERp46 PDIa famil 98.6 3.6E-07 7.8E-12 65.8 7.8 72 79-186 19-92 (102)
83 PTZ00051 thioredoxin; Provisio 98.6 1.7E-07 3.7E-12 67.3 6.1 74 76-187 18-91 (98)
84 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 4E-07 8.6E-12 66.2 7.5 83 78-203 21-104 (104)
85 cd03002 PDI_a_MPD1_like PDI fa 98.5 3.4E-07 7.3E-12 66.9 7.1 67 75-177 18-84 (109)
86 KOG1651 Glutathione peroxidase 98.5 1.5E-06 3.3E-11 69.0 10.5 124 46-186 15-155 (171)
87 cd02993 PDI_a_APS_reductase PD 98.5 4.7E-07 1E-11 66.9 7.1 45 74-121 20-64 (109)
88 cd02984 TRX_PICOT TRX domain, 98.5 7.1E-07 1.5E-11 63.8 7.6 73 77-186 15-87 (97)
89 cd02996 PDI_a_ERp44 PDIa famil 98.5 5.6E-07 1.2E-11 66.1 7.1 89 77-203 19-108 (108)
90 cd03065 PDI_b_Calsequestrin_N 98.4 1.5E-06 3.2E-11 66.1 8.6 75 74-185 25-104 (120)
91 cd03000 PDI_a_TMX3 PDIa family 98.4 3.4E-07 7.4E-12 66.9 4.8 34 77-111 16-49 (104)
92 PF00255 GSHPx: Glutathione pe 98.4 1E-06 2.2E-11 65.8 7.2 80 47-142 3-91 (108)
93 TIGR01295 PedC_BrcD bacterioci 98.4 2E-06 4.4E-11 65.3 8.1 90 65-186 9-109 (122)
94 PHA02278 thioredoxin-like prot 98.4 1.1E-06 2.3E-11 65.0 6.3 77 77-186 15-91 (103)
95 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 6.1E-07 1.3E-11 65.0 4.1 42 77-121 19-60 (101)
96 cd02947 TRX_family TRX family; 98.3 4.5E-06 9.8E-11 57.6 8.1 72 77-186 11-82 (93)
97 cd02961 PDI_a_family Protein D 98.3 1.5E-06 3.2E-11 61.3 5.0 83 78-203 17-101 (101)
98 TIGR01126 pdi_dom protein disu 98.3 3.5E-06 7.5E-11 60.3 6.8 74 74-185 12-87 (102)
99 KOG0907 Thioredoxin [Posttrans 98.3 5.4E-06 1.2E-10 61.7 7.9 77 74-188 19-95 (106)
100 TIGR01068 thioredoxin thioredo 98.2 4.6E-06 1E-10 59.3 7.1 72 77-185 15-86 (101)
101 cd02952 TRP14_like Human TRX-r 98.2 3.3E-06 7.1E-11 64.1 6.3 77 74-180 20-104 (119)
102 cd02965 HyaE HyaE family; HyaE 98.2 1E-05 2.3E-10 60.6 7.9 72 78-186 29-102 (111)
103 cd02957 Phd_like Phosducin (Ph 98.2 1.4E-05 3.1E-10 59.3 8.5 72 77-187 25-96 (113)
104 cd02959 ERp19 Endoplasmic reti 98.1 3E-06 6.6E-11 63.8 4.1 44 74-121 18-61 (117)
105 cd03006 PDI_a_EFP1_N PDIa fami 98.1 3.9E-06 8.6E-11 63.0 4.6 44 75-121 28-71 (113)
106 PTZ00443 Thioredoxin domain-co 98.1 7.7E-06 1.7E-10 68.5 6.3 70 78-184 54-123 (224)
107 PF00085 Thioredoxin: Thioredo 98.1 1.1E-05 2.3E-10 57.7 6.2 73 77-186 18-90 (103)
108 cd02986 DLP Dim1 family, Dim1- 98.1 1.4E-05 3E-10 60.2 6.8 42 77-121 15-56 (114)
109 COG3118 Thioredoxin domain-con 98.0 5.8E-06 1.3E-10 71.4 4.8 75 77-188 44-118 (304)
110 cd02992 PDI_a_QSOX PDIa family 98.0 1.3E-05 2.9E-10 59.8 5.5 31 77-108 20-50 (114)
111 cd02998 PDI_a_ERp38 PDIa famil 98.0 8.9E-06 1.9E-10 58.4 4.3 71 78-183 20-92 (105)
112 KOG4498 Uncharacterized conser 98.0 2.1E-05 4.5E-10 63.7 6.7 132 65-202 40-193 (197)
113 PLN00410 U5 snRNP protein, DIM 98.0 1E-05 2.3E-10 63.2 4.6 74 76-186 23-98 (142)
114 cd02989 Phd_like_TxnDC9 Phosdu 98.0 9.2E-05 2E-09 55.3 9.5 73 77-187 23-95 (113)
115 cd02975 PfPDO_like_N Pyrococcu 97.9 6.3E-05 1.4E-09 56.1 8.0 43 74-120 20-62 (113)
116 cd02987 Phd_like_Phd Phosducin 97.9 5.1E-05 1.1E-09 61.1 7.8 85 78-201 85-172 (175)
117 cd03001 PDI_a_P5 PDIa family, 97.9 2.1E-05 4.6E-10 56.5 5.0 42 76-120 18-59 (103)
118 PRK00293 dipZ thiol:disulfide 97.9 1.8E-05 3.8E-10 74.7 5.2 72 74-180 473-548 (571)
119 PF13728 TraF: F plasmid trans 97.9 8.7E-05 1.9E-09 61.8 8.7 100 66-202 112-213 (215)
120 KOG2792 Putative cytochrome C 97.9 5.7E-05 1.2E-09 64.0 7.6 100 47-158 121-228 (280)
121 TIGR01130 ER_PDI_fam protein d 97.8 3.5E-05 7.7E-10 69.4 6.4 41 77-119 19-61 (462)
122 PTZ00102 disulphide isomerase; 97.8 4.3E-05 9.3E-10 69.6 7.0 41 77-119 50-90 (477)
123 COG4312 Uncharacterized protei 97.8 8.4E-05 1.8E-09 61.6 7.3 87 66-156 63-155 (247)
124 TIGR00424 APS_reduc 5'-adenyly 97.8 3.4E-05 7.4E-10 70.9 5.1 45 74-121 370-414 (463)
125 cd02995 PDI_a_PDI_a'_C PDIa fa 97.7 7.6E-05 1.6E-09 53.5 4.6 41 77-119 19-60 (104)
126 COG0526 TrxA Thiol-disulfide i 97.7 0.00016 3.5E-09 50.8 6.2 43 74-120 31-73 (127)
127 TIGR02739 TraF type-F conjugat 97.6 0.0002 4.3E-09 61.2 7.7 90 65-184 141-232 (256)
128 PTZ00102 disulphide isomerase; 97.6 0.00019 4.2E-09 65.4 7.1 35 74-110 374-408 (477)
129 PLN02309 5'-adenylylsulfate re 97.6 0.00011 2.5E-09 67.5 5.3 44 74-120 364-407 (457)
130 cd01659 TRX_superfamily Thiore 97.5 0.00023 4.9E-09 44.5 4.6 45 80-128 1-45 (69)
131 cd02955 SSP411 TRX domain, SSP 97.5 0.00086 1.9E-08 51.1 8.5 34 168-201 81-116 (124)
132 PTZ00062 glutaredoxin; Provisi 97.4 0.00037 8E-09 57.6 6.0 66 78-189 19-84 (204)
133 TIGR02187 GlrX_arch Glutaredox 97.4 0.001 2.2E-08 55.0 8.4 77 74-186 18-97 (215)
134 cd02988 Phd_like_VIAF Phosduci 97.3 0.0012 2.6E-08 54.0 8.2 84 78-202 104-190 (192)
135 TIGR00411 redox_disulf_1 small 97.3 0.00041 8.9E-09 47.7 4.7 38 79-119 2-39 (82)
136 PRK13703 conjugal pilus assemb 97.2 0.0017 3.7E-08 55.2 8.3 90 66-185 135-226 (248)
137 PF05176 ATP-synt_10: ATP10 pr 97.2 0.0014 3E-08 55.9 7.5 134 26-187 86-237 (252)
138 PF04592 SelP_N: Selenoprotein 97.2 0.0024 5.3E-08 53.6 8.7 114 45-186 10-129 (238)
139 PF09695 YtfJ_HI0045: Bacteria 97.1 0.0049 1.1E-07 48.9 9.2 139 35-202 1-156 (160)
140 TIGR00412 redox_disulf_2 small 96.7 0.0035 7.7E-08 43.3 5.0 36 81-121 3-38 (76)
141 TIGR02196 GlrX_YruB Glutaredox 96.6 0.0066 1.4E-07 40.2 5.3 54 80-143 2-56 (74)
142 cd02973 TRX_GRX_like Thioredox 96.5 0.006 1.3E-07 40.5 4.7 36 80-119 3-38 (67)
143 cd02982 PDI_b'_family Protein 96.4 0.0035 7.6E-08 44.9 3.3 42 75-120 12-53 (103)
144 TIGR02200 GlrX_actino Glutared 96.3 0.01 2.2E-07 40.0 5.0 33 81-122 3-35 (77)
145 TIGR01130 ER_PDI_fam protein d 96.3 0.0043 9.3E-08 55.9 3.9 42 77-120 365-408 (462)
146 PF13899 Thioredoxin_7: Thiore 96.2 0.012 2.6E-07 40.9 5.2 64 74-143 16-81 (82)
147 KOG0190 Protein disulfide isom 96.2 0.0055 1.2E-07 56.7 4.4 81 68-152 34-115 (493)
148 cd02958 UAS UAS family; UAS is 96.2 0.036 7.7E-07 40.9 7.9 19 74-93 16-34 (114)
149 KOG0908 Thioredoxin-like prote 95.9 0.01 2.3E-07 50.4 4.1 54 75-135 20-73 (288)
150 PHA02125 thioredoxin-like prot 95.9 0.014 3E-07 40.0 4.1 20 80-100 2-21 (75)
151 cd02960 AGR Anterior Gradient 95.9 0.0077 1.7E-07 46.4 3.0 19 74-93 22-40 (130)
152 smart00594 UAS UAS domain. 95.7 0.082 1.8E-06 39.7 8.2 20 74-94 26-45 (122)
153 TIGR02187 GlrX_arch Glutaredox 95.5 0.031 6.6E-07 46.1 5.5 19 76-94 133-151 (215)
154 cd03007 PDI_a_ERp29_N PDIa fam 95.2 0.062 1.3E-06 40.6 5.8 40 68-110 10-49 (116)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 94.9 0.052 1.1E-06 38.8 4.5 32 70-104 8-39 (89)
156 KOG0191 Thioredoxin/protein di 94.8 0.068 1.5E-06 47.9 5.9 64 77-147 48-111 (383)
157 cd02976 NrdH NrdH-redoxin (Nrd 94.7 0.13 2.8E-06 33.7 5.9 55 81-145 3-58 (73)
158 PF14595 Thioredoxin_9: Thiore 94.6 0.018 3.8E-07 44.2 1.6 73 78-185 43-116 (129)
159 TIGR02190 GlrX-dom Glutaredoxi 94.2 0.1 2.2E-06 36.0 4.5 52 82-143 12-63 (79)
160 TIGR02180 GRX_euk Glutaredoxin 94.1 0.083 1.8E-06 36.1 4.0 56 81-142 2-59 (84)
161 KOG0912 Thiol-disulfide isomer 92.8 0.15 3.2E-06 44.8 4.1 72 77-152 14-89 (375)
162 PRK10329 glutaredoxin-like pro 92.4 0.41 9E-06 33.4 5.4 55 81-145 4-58 (81)
163 TIGR02194 GlrX_NrdH Glutaredox 92.4 0.32 7E-06 32.7 4.7 54 81-144 2-55 (72)
164 cd02066 GRX_family Glutaredoxi 92.3 0.36 7.8E-06 31.2 4.8 55 81-145 3-58 (72)
165 PRK10877 protein disulfide iso 92.2 0.35 7.6E-06 40.6 5.7 34 78-117 109-142 (232)
166 TIGR00365 monothiol glutaredox 91.8 0.46 1E-05 34.3 5.2 60 73-143 9-73 (97)
167 PF00462 Glutaredoxin: Glutare 91.7 0.21 4.5E-06 32.3 3.0 52 81-142 2-54 (60)
168 KOG0190 Protein disulfide isom 91.4 0.18 4E-06 46.9 3.3 34 75-110 384-417 (493)
169 TIGR02181 GRX_bact Glutaredoxi 91.4 0.41 8.9E-06 32.6 4.4 54 81-144 2-56 (79)
170 cd03418 GRX_GRXb_1_3_like Glut 91.2 0.73 1.6E-05 30.8 5.5 54 81-143 3-57 (75)
171 cd03028 GRX_PICOT_like Glutare 91.1 0.59 1.3E-05 33.1 5.0 61 72-142 4-68 (90)
172 cd03029 GRX_hybridPRX5 Glutare 90.9 0.55 1.2E-05 31.4 4.6 31 82-121 5-35 (72)
173 PRK11200 grxA glutaredoxin 1; 90.6 0.63 1.4E-05 32.3 4.8 37 81-121 4-40 (85)
174 KOG0191 Thioredoxin/protein di 90.3 0.43 9.4E-06 42.7 4.6 53 77-134 163-216 (383)
175 KOG1731 FAD-dependent sulfhydr 90.0 0.25 5.4E-06 46.6 2.9 62 78-142 59-121 (606)
176 KOG3425 Uncharacterized conser 90.0 0.41 8.9E-06 36.4 3.5 49 69-120 19-74 (128)
177 PF06110 DUF953: Eukaryotic pr 89.2 0.27 5.9E-06 37.2 2.1 45 74-121 18-68 (119)
178 PHA03050 glutaredoxin; Provisi 88.6 1.1 2.5E-05 33.0 5.1 20 73-94 10-29 (108)
179 PF13778 DUF4174: Domain of un 88.6 0.44 9.6E-06 35.8 2.9 92 69-184 3-96 (118)
180 cd03027 GRX_DEP Glutaredoxin ( 88.1 1.6 3.5E-05 29.2 5.2 53 82-144 5-58 (73)
181 PRK10638 glutaredoxin 3; Provi 88.1 1.1 2.5E-05 30.9 4.5 52 82-143 6-58 (83)
182 COG0695 GrxC Glutaredoxin and 85.9 2.3 4.9E-05 29.6 5.1 55 82-146 5-62 (80)
183 PF07976 Phe_hydrox_dim: Pheno 85.1 1.4 3.1E-05 35.1 4.2 110 32-156 27-166 (169)
184 cd03419 GRX_GRXh_1_2_like Glut 83.4 1.8 3.8E-05 29.3 3.6 56 81-144 3-60 (82)
185 PRK11509 hydrogenase-1 operon 83.4 4.8 0.0001 31.0 6.3 34 142-186 77-110 (132)
186 COG2179 Predicted hydrolase of 83.1 6.1 0.00013 31.8 6.9 68 67-135 18-86 (175)
187 TIGR02189 GlrX-like_plant Glut 82.9 1.6 3.5E-05 31.6 3.3 36 74-120 6-41 (99)
188 PF11009 DUF2847: Protein of u 81.5 2.7 5.8E-05 31.2 4.1 76 78-185 21-96 (105)
189 cd03032 ArsC_Spx Arsenate Redu 80.5 2.3 5.1E-05 31.4 3.6 66 80-156 2-71 (115)
190 COG4232 Thiol:disulfide interc 80.3 2 4.3E-05 40.8 3.7 55 78-134 476-532 (569)
191 PTZ00062 glutaredoxin; Provisi 80.2 3.7 8.1E-05 33.9 5.0 64 69-142 106-173 (204)
192 TIGR02183 GRXA Glutaredoxin, G 79.9 9.1 0.0002 26.6 6.3 15 80-94 2-16 (86)
193 cd02977 ArsC_family Arsenate R 78.5 2.1 4.6E-05 30.9 2.7 64 81-155 2-69 (105)
194 cd02979 PHOX_C FAD-dependent P 78.5 17 0.00037 28.8 8.2 116 45-184 4-153 (167)
195 PRK01655 spxA transcriptional 78.4 2.3 5E-05 32.4 3.0 66 80-156 2-71 (131)
196 PF08235 LNS2: LNS2 (Lipin/Ned 77.4 7.1 0.00015 31.0 5.6 69 66-146 9-85 (157)
197 PRK11657 dsbG disulfide isomer 77.4 3.8 8.1E-05 34.8 4.3 23 78-101 119-141 (251)
198 cd03036 ArsC_like Arsenate Red 76.8 2.4 5.3E-05 31.2 2.7 63 82-155 3-69 (111)
199 TIGR03759 conj_TIGR03759 integ 76.6 7.6 0.00017 32.0 5.7 68 79-156 112-186 (200)
200 PRK05370 argininosuccinate syn 76.4 3.4 7.4E-05 38.1 4.0 71 68-152 4-81 (447)
201 cd03023 DsbA_Com1_like DsbA fa 76.2 2 4.4E-05 32.2 2.2 30 77-107 6-35 (154)
202 PRK10824 glutaredoxin-4; Provi 76.0 8.1 0.00018 29.0 5.3 61 71-142 10-75 (115)
203 TIGR01617 arsC_related transcr 74.8 4.3 9.3E-05 30.1 3.6 62 82-154 3-68 (117)
204 TIGR00995 3a0901s06TIC22 chlor 73.4 37 0.00081 29.3 9.3 83 45-155 82-170 (270)
205 cd02991 UAS_ETEA UAS family, E 73.0 12 0.00027 27.8 5.7 43 74-123 16-64 (116)
206 COG3054 Predicted transcriptio 71.9 5.9 0.00013 31.5 3.7 142 33-202 21-178 (184)
207 PF00702 Hydrolase: haloacid d 70.2 27 0.00059 27.4 7.5 58 96-155 129-194 (215)
208 PF06053 DUF929: Domain of unk 69.6 6.9 0.00015 33.4 4.0 42 65-108 47-89 (249)
209 cd03060 GST_N_Omega_like GST_N 69.2 7.7 0.00017 25.6 3.5 53 82-145 3-56 (71)
210 KOG4277 Uncharacterized conser 66.9 6.5 0.00014 34.8 3.3 65 74-142 41-105 (468)
211 PRK12559 transcriptional regul 65.7 8.4 0.00018 29.4 3.5 66 80-156 2-71 (131)
212 TIGR03765 ICE_PFL_4695 integra 64.8 38 0.00082 25.1 6.6 56 96-155 37-92 (105)
213 PF11072 DUF2859: Protein of u 63.0 43 0.00094 26.1 7.0 56 96-155 75-130 (142)
214 PRK08132 FAD-dependent oxidore 62.8 33 0.00072 32.0 7.6 104 34-184 426-530 (547)
215 TIGR03830 CxxCG_CxxCG_HTH puta 61.7 37 0.0008 24.9 6.3 66 73-156 20-92 (127)
216 PF03190 Thioredox_DsbH: Prote 60.8 32 0.0007 27.4 6.1 90 67-186 30-122 (163)
217 PRK13344 spxA transcriptional 60.6 14 0.0003 28.2 3.8 65 81-156 3-71 (132)
218 cd01427 HAD_like Haloacid deha 59.9 22 0.00047 25.2 4.7 38 96-134 26-63 (139)
219 PRK12759 bifunctional gluaredo 58.5 17 0.00037 33.1 4.7 40 82-130 6-45 (410)
220 COG2143 Thioredoxin-related pr 57.9 15 0.00032 29.5 3.6 19 74-93 41-59 (182)
221 PRK05778 2-oxoglutarate ferred 57.4 15 0.00033 32.1 4.0 33 83-118 16-51 (301)
222 cd03041 GST_N_2GST_N GST_N fam 57.3 43 0.00094 22.3 5.6 53 82-144 4-57 (77)
223 PRK06184 hypothetical protein; 55.9 52 0.0011 30.3 7.5 93 34-183 385-479 (502)
224 TIGR01672 AphA HAD superfamily 55.5 19 0.00042 30.3 4.2 59 83-142 101-165 (237)
225 cd03035 ArsC_Yffb Arsenate Red 55.2 21 0.00045 26.0 3.9 62 81-155 2-67 (105)
226 PF09419 PGP_phosphatase: Mito 52.8 89 0.0019 25.0 7.4 80 45-135 18-108 (168)
227 PRK08294 phenol 2-monooxygenas 52.0 36 0.00079 32.7 6.0 121 34-183 462-615 (634)
228 cd05017 SIS_PGI_PMI_1 The memb 50.1 36 0.00078 24.9 4.6 41 96-140 56-96 (119)
229 PRK13226 phosphoglycolate phos 49.6 89 0.0019 25.4 7.3 45 96-141 97-141 (229)
230 TIGR02177 PorB_KorB 2-oxoacid: 49.4 25 0.00053 30.6 4.0 24 86-111 2-25 (287)
231 COG3769 Predicted hydrolase (H 49.0 30 0.00065 29.4 4.2 45 101-147 30-74 (274)
232 cd03420 SirA_RHOD_Pry_redox Si 48.8 76 0.0017 21.0 5.6 46 83-135 4-52 (69)
233 PF13462 Thioredoxin_4: Thiore 48.1 12 0.00025 28.4 1.6 50 66-119 4-54 (162)
234 TIGR01459 HAD-SF-IIA-hyp4 HAD- 46.3 80 0.0017 26.0 6.6 65 77-144 9-76 (242)
235 cd02983 P5_C P5 family, C-term 45.6 44 0.00094 25.3 4.5 43 77-120 22-66 (130)
236 TIGR01662 HAD-SF-IIIA HAD-supe 44.1 81 0.0018 23.0 5.7 39 96-135 27-73 (132)
237 PF12710 HAD: haloacid dehalog 43.8 38 0.00083 26.2 4.1 34 101-135 96-129 (192)
238 KOG0911 Glutaredoxin-related p 43.1 8.8 0.00019 32.2 0.3 42 74-120 16-57 (227)
239 KOG1752 Glutaredoxin and relat 42.4 97 0.0021 22.7 5.7 36 74-120 12-47 (104)
240 PF02153 PDH: Prephenate dehyd 42.2 41 0.00089 28.3 4.2 54 66-128 114-167 (258)
241 cd03059 GST_N_SspA GST_N famil 41.7 22 0.00049 23.0 2.1 53 83-145 4-56 (73)
242 PF05768 DUF836: Glutaredoxin- 41.7 12 0.00026 25.8 0.7 56 80-145 2-57 (81)
243 PRK06183 mhpA 3-(3-hydroxyphen 41.4 1.7E+02 0.0037 27.2 8.6 106 34-183 410-516 (538)
244 cd03020 DsbA_DsbC_DsbG DsbA fa 40.9 29 0.00063 27.8 3.0 25 75-101 77-101 (197)
245 cd03423 SirA SirA (also known 39.5 1E+02 0.0022 20.3 5.1 46 83-135 4-52 (69)
246 TIGR01485 SPP_plant-cyano sucr 38.8 97 0.0021 25.6 6.0 39 96-135 23-61 (249)
247 PF13419 HAD_2: Haloacid dehal 38.7 51 0.0011 24.5 3.9 39 96-135 79-117 (176)
248 cd02972 DsbA_family DsbA famil 38.6 21 0.00045 23.9 1.6 33 81-116 2-34 (98)
249 TIGR01370 cysRS possible cyste 38.4 1E+02 0.0022 27.2 6.2 49 96-148 250-309 (315)
250 PRK11869 2-oxoacid ferredoxin 38.3 33 0.00071 29.7 3.1 26 83-110 6-31 (280)
251 cd03019 DsbA_DsbA DsbA family, 37.8 38 0.00083 26.0 3.2 29 77-106 16-44 (178)
252 cd03051 GST_N_GTT2_like GST_N 37.7 42 0.00091 21.5 2.9 13 82-94 3-15 (74)
253 PRK11033 zntA zinc/cadmium/mer 36.9 70 0.0015 31.5 5.4 39 96-135 570-608 (741)
254 PF00875 DNA_photolyase: DNA p 36.7 95 0.0021 23.9 5.3 45 96-144 52-96 (165)
255 PRK10200 putative racemase; Pr 36.0 84 0.0018 26.1 5.1 43 96-142 61-103 (230)
256 TIGR01490 HAD-SF-IB-hyp1 HAD-s 36.0 93 0.002 24.4 5.2 39 96-135 89-127 (202)
257 PRK11866 2-oxoacid ferredoxin 35.5 59 0.0013 28.1 4.2 24 84-109 6-29 (279)
258 PF13192 Thioredoxin_3: Thiore 35.4 54 0.0012 22.0 3.3 19 84-103 6-24 (76)
259 cd00570 GST_N_family Glutathio 35.4 32 0.0007 21.1 2.0 55 83-146 4-58 (71)
260 COG4545 Glutaredoxin-related p 35.4 1.6E+02 0.0034 20.7 5.4 12 83-94 7-18 (85)
261 COG3019 Predicted metal-bindin 35.3 65 0.0014 25.3 3.9 44 80-135 28-71 (149)
262 COG3529 Predicted nucleic-acid 35.1 37 0.0008 22.7 2.2 27 82-115 7-33 (66)
263 TIGR01449 PGP_bact 2-phosphogl 34.9 88 0.0019 24.7 5.0 39 96-135 87-125 (213)
264 TIGR01488 HAD-SF-IB Haloacid D 34.2 85 0.0019 23.9 4.6 38 97-135 76-113 (177)
265 PF12017 Tnp_P_element: Transp 33.1 1E+02 0.0022 26.1 5.2 37 97-134 196-232 (236)
266 smart00262 GEL Gelsolin homolo 32.8 31 0.00068 23.8 1.7 20 170-189 27-46 (90)
267 cd05014 SIS_Kpsf KpsF-like pro 32.4 92 0.002 22.5 4.3 31 96-127 60-90 (128)
268 PF00626 Gelsolin: Gelsolin re 32.3 14 0.0003 24.5 -0.2 18 171-188 20-37 (76)
269 TIGR03831 YgiT_finger YgiT-typ 32.2 31 0.00067 20.5 1.5 21 74-94 21-41 (46)
270 TIGR01698 PUNP purine nucleoti 32.2 1.6E+02 0.0035 24.9 6.2 62 46-118 29-90 (237)
271 COG5216 Uncharacterized conser 32.2 46 0.00099 22.2 2.2 23 64-93 30-52 (67)
272 PF01136 Peptidase_U32: Peptid 31.9 97 0.0021 25.3 4.8 43 96-144 1-43 (233)
273 TIGR01689 EcbF-BcbF capsule bi 31.8 1.1E+02 0.0023 23.2 4.7 38 97-135 27-79 (126)
274 COG1393 ArsC Arsenate reductas 31.7 35 0.00075 25.6 1.9 66 80-155 3-71 (117)
275 cd05008 SIS_GlmS_GlmD_1 SIS (S 31.5 1.1E+02 0.0024 22.0 4.7 31 96-127 59-89 (126)
276 cd03422 YedF YedF is a bacteri 31.0 1.6E+02 0.0035 19.4 5.4 46 83-135 4-52 (69)
277 PRK13222 phosphoglycolate phos 30.7 1.5E+02 0.0033 23.5 5.7 45 96-141 95-139 (226)
278 TIGR00612 ispG_gcpE 1-hydroxy- 30.6 1.7E+02 0.0037 26.3 6.2 47 97-146 34-81 (346)
279 PF10170 C6_DPF: Cysteine-rich 30.4 21 0.00046 26.1 0.5 27 81-107 67-94 (97)
280 PRK10026 arsenate reductase; P 29.9 56 0.0012 25.4 2.8 65 80-155 4-72 (141)
281 COG0546 Gph Predicted phosphat 29.9 1.6E+02 0.0034 23.9 5.7 42 96-138 91-132 (220)
282 TIGR00338 serB phosphoserine p 29.8 1E+02 0.0022 24.6 4.6 39 96-135 87-125 (219)
283 PHA00649 hypothetical protein 29.7 30 0.00066 23.8 1.1 20 114-133 25-44 (83)
284 TIGR01668 YqeG_hyp_ppase HAD s 29.7 1.7E+02 0.0037 22.7 5.7 57 77-135 26-84 (170)
285 PRK01018 50S ribosomal protein 29.7 2.1E+02 0.0046 20.5 5.8 50 103-155 25-78 (99)
286 TIGR01491 HAD-SF-IB-PSPlk HAD- 29.6 1.2E+02 0.0026 23.5 4.9 39 96-135 82-120 (201)
287 COG0821 gcpE 1-hydroxy-2-methy 29.1 1.2E+02 0.0025 27.3 4.9 43 101-146 40-83 (361)
288 TIGR01428 HAD_type_II 2-haloal 29.1 1.2E+02 0.0025 23.8 4.7 39 96-135 94-132 (198)
289 KOG0913 Thiol-disulfide isomer 29.0 18 0.00038 30.8 -0.1 42 68-112 33-74 (248)
290 KOG3357 Uncharacterized conser 28.8 26 0.00055 27.1 0.7 14 42-55 91-104 (167)
291 PRK11867 2-oxoglutarate ferred 28.6 80 0.0017 27.3 3.9 23 86-110 18-40 (286)
292 TIGR02253 CTE7 HAD superfamily 28.1 1.1E+02 0.0024 24.2 4.5 39 96-135 96-134 (221)
293 PHA03398 viral phosphatase sup 27.9 1.5E+02 0.0033 26.1 5.5 50 97-147 151-200 (303)
294 cd03045 GST_N_Delta_Epsilon GS 27.6 48 0.001 21.5 1.9 55 82-145 3-59 (74)
295 cd03037 GST_N_GRX2 GST_N famil 27.5 1.1E+02 0.0023 19.7 3.6 51 83-144 4-54 (71)
296 PRK09628 oorB 2-oxoglutarate-a 27.3 89 0.0019 27.0 3.9 26 82-109 13-38 (277)
297 PLN02954 phosphoserine phospha 26.9 1.3E+02 0.0028 24.0 4.7 39 96-135 86-124 (224)
298 PRK13288 pyrophosphatase PpaX; 26.5 2.2E+02 0.0049 22.5 6.0 45 96-141 84-128 (214)
299 KOG0780 Signal recognition par 26.1 2.2E+02 0.0047 26.5 6.2 52 102-155 121-177 (483)
300 PF01206 TusA: Sulfurtransfera 26.0 1.9E+02 0.0042 18.7 5.6 55 81-143 3-59 (70)
301 TIGR01489 DKMTPPase-SF 2,3-dik 25.9 2.1E+02 0.0047 21.7 5.7 39 96-135 74-112 (188)
302 PRK13225 phosphoglycolate phos 25.8 2.1E+02 0.0046 24.3 6.0 45 96-141 144-188 (273)
303 TIGR02463 MPGP_rel mannosyl-3- 25.7 1.9E+02 0.0042 23.0 5.5 46 97-144 19-64 (221)
304 PF11720 Inhibitor_I78: Peptid 25.4 82 0.0018 20.5 2.6 18 166-183 40-58 (60)
305 KOG1615 Phosphoserine phosphat 25.1 1.8E+02 0.0039 24.3 5.1 49 97-148 91-145 (227)
306 cd03040 GST_N_mPGES2 GST_N fam 24.4 2E+02 0.0043 18.7 4.6 50 83-144 5-54 (77)
307 cd03052 GST_N_GDAP1 GST_N fami 24.4 54 0.0012 21.8 1.7 56 82-145 3-59 (73)
308 COG0560 SerB Phosphoserine pho 24.1 1.5E+02 0.0031 24.4 4.5 39 96-135 79-117 (212)
309 TIGR03351 PhnX-like phosphonat 24.0 1.9E+02 0.004 23.0 5.1 39 96-135 89-127 (220)
310 COG1419 FlhF Flagellar GTP-bin 23.7 2.6E+02 0.0056 25.7 6.3 56 96-154 217-278 (407)
311 PF03193 DUF258: Protein of un 23.6 1.9E+02 0.0042 22.8 4.9 44 100-146 2-45 (161)
312 TIGR01684 viral_ppase viral ph 23.5 2.7E+02 0.0058 24.6 6.1 45 97-142 149-193 (301)
313 PRK10853 putative reductase; P 23.4 1.1E+02 0.0023 22.8 3.2 62 81-155 3-68 (118)
314 PF08821 CGGC: CGGC domain; I 23.1 2.9E+02 0.0062 20.3 5.5 45 68-119 29-73 (107)
315 PF07555 NAGidase: beta-N-acet 23.1 1.7E+02 0.0038 25.6 5.0 50 93-144 53-114 (306)
316 PRK10826 2-deoxyglucose-6-phos 23.0 1.6E+02 0.0035 23.6 4.6 39 96-135 94-132 (222)
317 KOG3414 Component of the U4/U6 22.4 2.2E+02 0.0048 22.1 4.7 54 76-135 23-76 (142)
318 TIGR01647 ATPase-IIIA_H plasma 22.3 1.5E+02 0.0033 29.2 4.9 38 97-135 445-482 (755)
319 PRK01122 potassium-transportin 22.2 1.5E+02 0.0033 29.0 4.9 38 97-135 448-485 (679)
320 TIGR01512 ATPase-IB2_Cd heavy 22.2 1.7E+02 0.0037 27.5 5.1 58 96-154 364-423 (536)
321 PF03749 SfsA: Sugar fermentat 22.0 1.2E+02 0.0025 25.3 3.5 7 46-52 106-112 (215)
322 PF10673 DUF2487: Protein of u 22.0 1.8E+02 0.0039 22.7 4.3 24 98-121 72-95 (142)
323 TIGR01454 AHBA_synth_RP 3-amin 21.9 2.5E+02 0.0055 22.0 5.5 39 96-135 77-115 (205)
324 cd03034 ArsC_ArsC Arsenate Red 21.9 89 0.0019 22.8 2.5 63 82-155 3-69 (112)
325 TIGR00035 asp_race aspartate r 21.8 1.9E+02 0.0041 23.8 4.8 28 96-124 61-88 (229)
326 TIGR01681 HAD-SF-IIIC HAD-supe 21.8 2.2E+02 0.0047 21.0 4.8 37 96-133 31-68 (128)
327 TIGR01511 ATPase-IB1_Cu copper 21.6 1.8E+02 0.0039 27.6 5.1 38 97-135 408-445 (562)
328 PRK14010 potassium-transportin 21.6 1.7E+02 0.0036 28.7 5.0 38 97-135 444-481 (673)
329 PF03544 TonB_C: Gram-negative 21.5 1.7E+02 0.0037 19.1 3.8 20 170-189 20-40 (79)
330 PF02484 Rhabdo_NV: Rhabdoviru 21.5 64 0.0014 23.3 1.6 18 169-186 25-42 (111)
331 PLN02770 haloacid dehalogenase 21.5 2E+02 0.0043 23.8 4.9 39 96-135 110-148 (248)
332 PRK00366 ispG 4-hydroxy-3-meth 21.5 3E+02 0.0065 24.9 6.1 47 98-146 43-89 (360)
333 PF01380 SIS: SIS domain SIS d 21.4 1.9E+02 0.0041 20.6 4.3 33 96-129 66-98 (131)
334 cd03061 GST_N_CLIC GST_N famil 21.4 75 0.0016 22.7 2.0 52 86-148 20-72 (91)
335 TIGR01497 kdpB K+-transporting 21.3 1.7E+02 0.0038 28.6 5.0 37 98-135 450-486 (675)
336 TIGR01675 plant-AP plant acid 21.3 2.2E+02 0.0047 24.0 5.0 39 96-135 122-163 (229)
337 smart00775 LNS2 LNS2 domain. T 21.1 3.7E+02 0.008 20.7 6.1 48 97-146 30-85 (157)
338 PF06888 Put_Phosphatase: Puta 21.1 2.3E+02 0.0049 23.9 5.1 24 110-134 89-112 (234)
339 PF06953 ArsD: Arsenical resis 20.9 3.8E+02 0.0082 20.3 6.3 54 79-134 4-70 (123)
340 COG4359 Uncharacterized conser 20.8 2.8E+02 0.0061 23.0 5.4 24 97-121 76-99 (220)
341 PRK14324 glmM phosphoglucosami 20.8 3E+02 0.0066 25.1 6.3 11 125-135 191-201 (446)
342 TIGR03143 AhpF_homolog putativ 20.7 1.7E+02 0.0038 27.5 4.8 18 76-93 476-493 (555)
343 TIGR01352 tonB_Cterm TonB fami 20.7 1.2E+02 0.0026 19.6 2.8 20 169-188 13-33 (74)
344 TIGR02765 crypto_DASH cryptoch 20.6 2.9E+02 0.0063 24.9 6.1 38 97-135 61-98 (429)
345 cd00860 ThrRS_anticodon ThrRS 20.5 2.7E+02 0.0059 18.4 5.9 46 96-144 14-60 (91)
346 PRK04011 peptide chain release 20.4 1.3E+02 0.0029 27.4 3.8 36 85-122 350-391 (411)
347 cd03055 GST_N_Omega GST_N fami 20.3 1.8E+02 0.0039 19.9 3.8 11 83-93 22-32 (89)
348 COG0561 Cof Predicted hydrolas 20.2 4.9E+02 0.011 21.3 7.5 46 97-145 23-68 (264)
349 TIGR01670 YrbI-phosphatas 3-de 20.1 2E+02 0.0043 22.0 4.3 33 102-135 36-68 (154)
350 PRK08674 bifunctional phosphog 20.1 2.5E+02 0.0055 24.5 5.5 37 96-135 91-127 (337)
351 TIGR01285 nifN nitrogenase mol 20.1 6.7E+02 0.014 22.9 8.4 50 103-155 327-393 (432)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-38 Score=247.25 Aligned_cols=149 Identities=21% Similarity=0.328 Sum_probs=132.0
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
+++++|++ ||||+|++.+| +.++|++ ++||+|||+|||.+|||+|+.| +++|++++++|++.|+.
T Consensus 2 ~~l~~G~~----aPdF~Lp~~~g---------~~v~Lsd-~~Gk~VVLyFYPk~~TpgCT~E-a~~Frd~~~ef~~~~a~ 66 (157)
T COG1225 2 MMLKVGDK----APDFELPDQDG---------ETVSLSD-LRGKPVVLYFYPKDFTPGCTTE-ACDFRDLLEEFEKLGAV 66 (157)
T ss_pred CcCCCCCc----CCCeEeecCCC---------CEEehHH-hcCCcEEEEECCCCCCCcchHH-HHHHHHHHHHHHhCCCE
Confidence 57899999 79999999986 7899999 5999999999999999999999 99999999999999998
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccC-CCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL-GPRSERWSAYVE-DGRIKALNVEEAPSK 190 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~-~~~~~r~tfIId-dG~I~~~~~~~~~~~ 190 (203)
|+|||+|++.++++|+++++++ ||+|||++++++++||+.......|- .....|+||||| +|+|+++|....+
T Consensus 67 -V~GIS~Ds~~~~~~F~~k~~L~--f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~-- 141 (157)
T COG1225 67 -VLGISPDSPKSHKKFAEKHGLT--FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV-- 141 (157)
T ss_pred -EEEEeCCCHHHHHHHHHHhCCC--ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCC--
Confidence 9999999999999999999997 99999999999999999876543221 123689999999 9999999954433
Q ss_pred cccCCHHHHHhcC
Q 028808 191 MKVSGGDVILGQI 203 (203)
Q Consensus 191 ~~~~~a~~vL~~l 203 (203)
..|+++||+.|
T Consensus 142 --~~h~~~vl~~l 152 (157)
T COG1225 142 --KGHADEVLAAL 152 (157)
T ss_pred --cccHHHHHHHH
Confidence 46999998764
No 2
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=100.00 E-value=4.2e-36 Score=237.53 Aligned_cols=154 Identities=48% Similarity=0.802 Sum_probs=134.6
Q ss_pred CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC-cEEE
Q 028808 37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI-DSVI 115 (203)
Q Consensus 37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv-~~vi 115 (203)
+|++ ||+|++++.++ .+| +.++|+++++||++||+|||++|||+|+.||++.|++.+++|+++|+ . |+
T Consensus 1 vG~~----aPdF~l~~~~~-~~g-----~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~-V~ 69 (155)
T cd03013 1 VGDK----LPNVTLFEYVP-GPP-----NPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDE-VI 69 (155)
T ss_pred CCCc----CCCeEeeeecc-CCC-----ceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCE-EE
Confidence 5777 69999998751 012 78999996588899999999999999999999999999999999999 6 99
Q ss_pred EEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCC
Q 028808 116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSG 195 (203)
Q Consensus 116 ~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~ 195 (203)
+||.|+++++++|++++++..+||+|||++++++++||+..+....|++.++.|++||||+|+|+|+++.+++.++++++
T Consensus 70 ~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~~~~~~~~~ 149 (155)
T cd03013 70 CVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGDVEVSS 149 (155)
T ss_pred EEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEecCCCCccccC
Confidence 99999999999999999981149999999999999999986543234444568999999999999999999998999999
Q ss_pred HHHHHh
Q 028808 196 GDVILG 201 (203)
Q Consensus 196 a~~vL~ 201 (203)
++.||+
T Consensus 150 ~~~~~~ 155 (155)
T cd03013 150 AENVLK 155 (155)
T ss_pred HHHhcC
Confidence 999985
No 3
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-32 Score=209.65 Aligned_cols=163 Identities=39% Similarity=0.682 Sum_probs=148.4
Q ss_pred ccccCCCccccCCCceEEecccccc--CCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWD--EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~--~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
|++++|+++ |+.++....+++ +| .+.++..++++||+|||+..||+|+|+|+..|+|.|.+++++|+++|
T Consensus 1 m~~~vg~kl----P~vtf~tr~~~~~~~~----~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG 72 (165)
T COG0678 1 MTIMVGKKL----PAVTFKTRVGDETADG----WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG 72 (165)
T ss_pred CccccCCcC----CceEeEEeeccccCCC----cccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC
Confidence 467899996 999998764311 22 36789999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCC
Q 028808 111 IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK 190 (203)
Q Consensus 111 v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~ 190 (203)
+++|++||+||++.+.+|++..+...+..+++|.++++.|++|+..+....|+|.|++|+.+||+||+|.+.++++.++.
T Consensus 73 VD~I~cVSVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~ 152 (165)
T COG0678 73 VDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDP 152 (165)
T ss_pred CceEEEEEeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCc
Confidence 99999999999999999999999876899999999999999999998887888999999999999999999999996666
Q ss_pred cccCCHHHHHhcC
Q 028808 191 MKVSGGDVILGQI 203 (203)
Q Consensus 191 ~~~~~a~~vL~~l 203 (203)
+++++|+.+|++|
T Consensus 153 ~~vS~a~~mL~~L 165 (165)
T COG0678 153 FTVSSADTMLAQL 165 (165)
T ss_pred eeecCHHHHHhcC
Confidence 9999999999987
No 4
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.97 E-value=2.3e-31 Score=216.68 Aligned_cols=146 Identities=20% Similarity=0.353 Sum_probs=124.8
Q ss_pred ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808 35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV 114 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v 114 (203)
..+|++ ||+|+++...+ +.+++++|++ ++||++||+|||++|||+|+.| ++.|++++++|+++|++ |
T Consensus 2 ~~~~~~----~p~f~~~~~~~------g~~~~v~L~d-~~Gk~vvL~F~P~~~~p~C~~e-l~~l~~~~~~f~~~g~~-v 68 (187)
T PRK10382 2 SLINTK----IKPFKNQAFKN------GEFIEVTEKD-TEGRWSVFFFYPADFTFVCPTE-LGDVADHYEELQKLGVD-V 68 (187)
T ss_pred CccCCc----CCCcEEEEEeC------CcceEEEHHH-hCCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHhCCCE-E
Confidence 568999 69999998642 3458999999 5999999999999999999999 99999999999999999 9
Q ss_pred EEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808 115 ICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS 189 (203)
Q Consensus 115 i~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~ 189 (203)
++||.|+++.+++|+++. +++ ||+++|++++++++||+..+.. | .+.|++|||| +|+|+++++.+.+.
T Consensus 69 igIS~D~~~~~~a~~~~~~~~~~l~--fpllsD~~~~ia~~ygv~~~~~--g---~~~r~tfIID~~G~I~~~~~~~~~~ 141 (187)
T PRK10382 69 YSVSTDTHFTHKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMREDE--G---LADRATFVVDPQGIIQAIEVTAEGI 141 (187)
T ss_pred EEEeCCCHHHHHHHHHhhccccCCc--eeEEEcCchHHHHHcCCCcccC--C---ceeeEEEEECCCCEEEEEEEeCCCC
Confidence 999999999999999874 675 9999999999999999975321 2 2569999999 99999999987554
Q ss_pred CcccCCHHHHHhcC
Q 028808 190 KMKVSGGDVILGQI 203 (203)
Q Consensus 190 ~~~~~~a~~vL~~l 203 (203)
+ .+++++|+.|
T Consensus 142 ~---~~~~eil~~l 152 (187)
T PRK10382 142 G---RDASDLLRKI 152 (187)
T ss_pred C---CCHHHHHHHH
Confidence 3 4777777653
No 5
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.97 E-value=1.1e-30 Score=222.18 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=127.8
Q ss_pred ccccccccccccCCCccccCCCceEEec-cccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhH
Q 028808 25 IPTSSRAYASVAVGSDIVSAAQDVSLQK-ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNI 103 (203)
Q Consensus 25 ~~~~~~~~~~~~~G~~~~~~APdf~l~~-~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~ 103 (203)
.+.......++.+|++ +|+|++++ .+| +.+.++|+++++||++||+|||++|||+|+.| ++.|++++
T Consensus 58 ~~~~~~~~~~~~vGd~----aPdF~l~~~~~g-------~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~E-l~~l~~~~ 125 (261)
T PTZ00137 58 SEGLCNTVTSSLVGKL----MPSFKGTALLND-------DLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSE-LLGFSERL 125 (261)
T ss_pred CcccccccccccCCCC----CCCCEeecccCC-------CceEEeHHHHcCCCeEEEEEECCCCCCCCHHH-HHHHHHHH
Confidence 3333444456789999 69999987 343 22679999965899999999999999999999 99999999
Q ss_pred HHHHHcCCcEEEEEecCCHHHHHHHHHH-------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-
Q 028808 104 DKFKAKGIDSVICVAVNDPYVMNGWAEK-------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE- 175 (203)
Q Consensus 104 ~~f~~~gv~~vi~IS~d~~~~~~~~~~~-------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId- 175 (203)
++|+++|++ |+|||.|+++.+++|+++ .+++ ||+++|++++++++||+... .| .+.|++||||
T Consensus 126 ~ef~~~gv~-VigIS~Ds~~~h~aw~~~~~~~~g~~~l~--fPlLsD~~~~iakayGv~~~---~g---~a~R~tFIID~ 196 (261)
T PTZ00137 126 KEFEERGVK-VLGVSVDSPFSHKAWKELDVRQGGVSPLK--FPLFSDISREVSKSFGLLRD---EG---FSHRASVLVDK 196 (261)
T ss_pred HHHHHCCCE-EEEEECCCHHHHHHHHhhhhhhccccCcc--eEEEEcCChHHHHHcCCCCc---CC---ceecEEEEECC
Confidence 999999999 999999999999999874 4565 99999999999999999753 12 3679999999
Q ss_pred CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808 176 DGRIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 176 dG~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
+|+|+++++.+.+.+ .+++++|+.
T Consensus 197 dG~I~~~~~~~~~~g---r~v~eiLr~ 220 (261)
T PTZ00137 197 AGVVKHVAVYDLGLG---RSVDETLRL 220 (261)
T ss_pred CCEEEEEEEeCCCCC---CCHHHHHHH
Confidence 999999999876543 367777654
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=7.3e-31 Score=217.97 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=121.0
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
++.+|++ ||+|++.+.+| + +++.+.++||++||+|||++|||+|+.| +++|++++++|+++|++
T Consensus 6 ~~~iG~~----aPdF~l~~~~G---------~-~~l~~~~~GK~vvLff~pa~ftpvC~tE-l~~l~~~~~ef~~~g~~- 69 (215)
T PRK13191 6 IPLIGEK----FPEMEVITTHG---------K-IKLPDDYKGRWFVLFSHPGDFTPVCTTE-FYSFAKKYEEFKKLNTE- 69 (215)
T ss_pred cccCCCc----CCCCEeecCCC---------C-EEcHHHhCCCcEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-
Confidence 4678999 69999998864 4 6675546999999999999999999999 99999999999999999
Q ss_pred EEEEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 114 VICVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
|++||+|+.++|++|++. ++++ ||+++|++++++++||+..... ...+.|++|||| +|+|+++++++
T Consensus 70 VigvS~Ds~~~h~aw~~~~~~~~~~~i~--fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 70 LIGLSVDSNISHIEWVMWIEKNLKVEVP--FPIIADPMGNVAKRLGMIHAES----STATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred EEEEECCCHHHHHHHHhhHHHhcCCCCc--eEEEECCchHHHHHcCCccccc----CCceeEEEEEECCCCEEEEEEecC
Confidence 999999999999999762 3454 9999999999999999975321 113679999999 99999999988
Q ss_pred CCCCcccCCHHHHHhc
Q 028808 187 APSKMKVSGGDVILGQ 202 (203)
Q Consensus 187 ~~~~~~~~~a~~vL~~ 202 (203)
.+.+ .+++++|+.
T Consensus 144 ~~~g---r~~~eilr~ 156 (215)
T PRK13191 144 MEIG---RNIDEILRA 156 (215)
T ss_pred CCCC---CCHHHHHHH
Confidence 6544 377777664
No 7
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=1.6e-30 Score=216.84 Aligned_cols=146 Identities=17% Similarity=0.325 Sum_probs=121.1
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
.++.+|++ ||+|++++..| .++++++++||++||+|||++|||+|.+| +++|++++++|+++|++
T Consensus 7 ~~~~vG~~----aPdF~~~~~~g----------~~~l~d~~~Gk~vvL~f~pa~fcpvC~tE-l~~l~~~~~ef~~~~v~ 71 (222)
T PRK13189 7 RMPLIGDK----FPEFEVKTTHG----------PIKLPDDYKGKWFVLFSHPADFTPVCTTE-FVAFQKRYDEFRELNTE 71 (222)
T ss_pred ccccCCCc----CCCcEeEcCCC----------CEeeHHHhCCCeEEEEEeCCCCCCCCHHH-HHHHHHHHHHHHHcCCE
Confidence 35778999 69999998864 47888866999999999999999999999 99999999999999998
Q ss_pred EEEEEecCCHHHHHHHHHHh------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 113 SVICVAVNDPYVMNGWAEKL------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
||+||+|+++.+++|+++. +++ ||+++|++++++++||+..... +..+.|++|||| +|+|++++++
T Consensus 72 -VigvS~D~~~~h~aw~~~~~~~~g~~i~--fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 72 -LIGLSIDQVFSHIKWVEWIKEKLGVEIE--FPIIADDRGEIAKKLGMISPGK----GTNTVRAVFIIDPKGIIRAILYY 144 (222)
T ss_pred -EEEEECCCHHHHHHHHHhHHHhcCcCcc--eeEEEcCccHHHHHhCCCcccc----CCCceeEEEEECCCCeEEEEEec
Confidence 9999999999999998862 354 9999999999999999975321 112679999999 9999999998
Q ss_pred cCCCCcccCCHHHHH
Q 028808 186 EAPSKMKVSGGDVIL 200 (203)
Q Consensus 186 ~~~~~~~~~~a~~vL 200 (203)
+.+.+...++..++|
T Consensus 145 ~~~~gr~~~eilr~l 159 (222)
T PRK13189 145 PQEVGRNMDEILRLV 159 (222)
T ss_pred CCCCCCCHHHHHHHH
Confidence 876543333333333
No 8
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.5e-30 Score=216.06 Aligned_cols=142 Identities=19% Similarity=0.312 Sum_probs=120.0
Q ss_pred cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808 36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115 (203)
Q Consensus 36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi 115 (203)
.+|++ ||+|++.+.+| +...+++ ++||++||++||++|||+|+.| ++.|++++++|+++|++ ||
T Consensus 3 ~~Gd~----aPdF~l~t~~G---------~~~~~~~-~~Gk~vVL~~~pa~~tpvCt~E-l~~l~~~~~~f~~~gv~-vi 66 (215)
T PRK13599 3 LLGEK----FPSMEVVTTQG---------VKRLPED-YAGKWFVLFSHPADFTPVCTTE-FVEFARKANDFKELNTE-LI 66 (215)
T ss_pred CCCCC----CCCCEeECCCC---------cEecHHH-HCCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EE
Confidence 68998 69999998875 6667788 5999889999999999999999 99999999999999998 99
Q ss_pred EEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808 116 CVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 116 ~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~ 188 (203)
|||+|+++++++|++. .+++ ||+++|++++++++||+..... +..+.|++|||| +|+|+++++.+..
T Consensus 67 gIS~D~~~~~~~w~~~i~~~~~~~i~--fPil~D~~~~va~~yg~~~~~~----~~~~~R~tfIID~dG~Ir~~~~~p~~ 140 (215)
T PRK13599 67 GLSVDQVFSHIKWVEWIKDNTNIAIP--FPVIADDLGKVSNQLGMIHPGK----GTNTVRAVFIVDDKGTIRLIMYYPQE 140 (215)
T ss_pred EEeCCCHHHHHHHHHhHHHhcCCCCc--eeEEECCCchHHHHcCCCccCC----CCceeeEEEEECCCCEEEEEEEcCCC
Confidence 9999999999999763 3565 9999999999999999975321 223579999999 9999999987654
Q ss_pred CCcccCCHHHHHhc
Q 028808 189 SKMKVSGGDVILGQ 202 (203)
Q Consensus 189 ~~~~~~~a~~vL~~ 202 (203)
.+ .+.+++|+.
T Consensus 141 ~g---r~~~eilr~ 151 (215)
T PRK13599 141 VG---RNVDEILRA 151 (215)
T ss_pred CC---CCHHHHHHH
Confidence 33 467777654
No 9
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=209.78 Aligned_cols=151 Identities=19% Similarity=0.310 Sum_probs=126.6
Q ss_pred ccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 33 ASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
+++.+|++ ||+|++... .| +.+.+++|+++ .|||+||+|||++|+|+|.+| +..|.+.|++|+++|+
T Consensus 1 ~~~lIg~~----aP~F~~~a~~~~------~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTE-i~af~~~y~eF~~~g~ 68 (194)
T COG0450 1 MMSLIGKK----APDFTANAVLGG------EIFEEITLSDY-YGKWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGV 68 (194)
T ss_pred CccccCCc----CCCcEEEEEecC------ceeeEEechhh-cCcEEEEEeccCCCCccCcch-HHHHHhhhHHHHHcCC
Confidence 35778999 699999887 43 23569999995 669999999999999999999 9999999999999999
Q ss_pred cEEEEEecCCHHHHHHHHHH----hCCC-CceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 112 DSVICVAVNDPYVMNGWAEK----LQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 112 ~~vi~IS~d~~~~~~~~~~~----~~l~-~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
+ |||+|+|+.++|.+|.+. .++. .+||+++|++++++++||+..+.. |. +.|++|||| +|+|+++.++
T Consensus 69 e-VigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~--g~---a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 69 E-VIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE--GL---ALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred E-EEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC--Cc---ceeEEEEECCCCeEEEEEEe
Confidence 9 999999999999999887 4532 259999999999999999987532 22 689999999 9999999999
Q ss_pred cCCCCcccCCHHHHHh
Q 028808 186 EAPSKMKVSGGDVILG 201 (203)
Q Consensus 186 ~~~~~~~~~~a~~vL~ 201 (203)
+.+-+-..+..-++++
T Consensus 143 ~~~iGRn~dEilR~id 158 (194)
T COG0450 143 PLTIGRNVDEILRVID 158 (194)
T ss_pred cCCCCcCHHHHHHHHH
Confidence 8875533334444444
No 10
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-30 Score=201.14 Aligned_cols=168 Identities=44% Similarity=0.779 Sum_probs=146.7
Q ss_pred cccccccccCCCccccCCCceEEeccccccCCCCCCce--eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHH
Q 028808 28 SSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFA--TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDK 105 (203)
Q Consensus 28 ~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~--~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~ 105 (203)
+.+.++++.+|+.+ |+-++.-... .+.+.+ +++++++++||++||+-.|++|+|+|...|+|.|.+..++
T Consensus 2 s~~~~a~i~vGd~~----p~~~is~~~~----~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~e 73 (171)
T KOG0541|consen 2 SSRVMAPIAVGDTL----PSGTISLFED----EPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADE 73 (171)
T ss_pred CccccccccccCcc----ccccchhhcc----CccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHH
Confidence 34667889999996 8833221110 011113 8999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 106 FKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 106 f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
|+++|+++||+||+|||+.+++|.+.++.+....+++|+++++.+++|+..+....+++.|+.|+.++++||+|.+..++
T Consensus 74 lksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE 153 (171)
T KOG0541|consen 74 LKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVE 153 (171)
T ss_pred HHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEec
Confidence 99999999999999999999999999998667999999999999999998876666678899999999999999999999
Q ss_pred cCCCCcccCCHHHHHhcC
Q 028808 186 EAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 186 ~~~~~~~~~~a~~vL~~l 203 (203)
++++++++++|+.||.+|
T Consensus 154 ~~g~~~t~ssa~~il~~l 171 (171)
T KOG0541|consen 154 EGGTDFTVSSAEDILKQL 171 (171)
T ss_pred cCCCceEEecHHHHhhcC
Confidence 998889999999999986
No 11
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.97 E-value=3.4e-30 Score=211.95 Aligned_cols=146 Identities=18% Similarity=0.337 Sum_probs=119.9
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
++++|++ ||+|++.+..| .++|++ ++||++||+|||++|||+|+.| ++.|++++++|+++|++
T Consensus 1 ~~~vG~~----aP~F~~~~~~g----------~v~l~d-~~gk~vvL~~~p~~~cp~C~~E-l~~l~~~~~~f~~~~~~- 63 (202)
T PRK13190 1 PVKLGQK----APDFTVNTTKG----------PIDLSK-YKGKWVLLFSHPADFTPVCTTE-FIAFSRRYEDFKKLGVE- 63 (202)
T ss_pred CCCCCCC----CCCcEEecCCC----------cEeHHH-hCCCEEEEEEEcCCCCCCCHHH-HHHHHHHHHHHHHCCCE-
Confidence 3678999 69999998653 599999 4999888999999999999999 99999999999999999
Q ss_pred EEEEecCCHHHHHHHHHH----hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808 114 VICVAVNDPYVMNGWAEK----LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~----~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~ 188 (203)
|++||+|+.+.+++|+++ .++..+||+++|++++++++||+..... | .+.|++|||| +|+|+++++++.+
T Consensus 64 vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~--g---~~~p~~fiId~~G~I~~~~~~~~~ 138 (202)
T PRK13190 64 LVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS--G---ATVRGVFIIDPNQIVRWMIYYPAE 138 (202)
T ss_pred EEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccC--C---cEEeEEEEECCCCEEEEEEEeCCC
Confidence 999999999999998764 4532249999999999999999965322 2 2579999999 9999999998766
Q ss_pred CCcccCCHHHHHh
Q 028808 189 SKMKVSGGDVILG 201 (203)
Q Consensus 189 ~~~~~~~a~~vL~ 201 (203)
.+.+.++..++|+
T Consensus 139 ~gr~~~ellr~l~ 151 (202)
T PRK13190 139 TGRNIDEIIRITK 151 (202)
T ss_pred CCCCHHHHHHHHH
Confidence 5433334444443
No 12
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=1.4e-29 Score=208.30 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=117.9
Q ss_pred CCCccccCCCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808 37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115 (203)
Q Consensus 37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi 115 (203)
+|++ ||+|++.+.+| .++|+++ +| |++||+|||++|||+|+.| +++|++++++|+++|++ |+
T Consensus 1 vG~~----aP~F~~~~~~g----------~~~l~d~-~g~k~vvlf~~pa~~cp~C~~e-l~~l~~~~~~f~~~gv~-vi 63 (203)
T cd03016 1 LGDT----APNFEADTTHG----------PIKFHDY-LGDSWGILFSHPADFTPVCTTE-LGAFAKLAPEFKKRNVK-LI 63 (203)
T ss_pred CcCC----CCCeEEecCCC----------cEeHHHH-cCCCEEEEEEecCCCCCcCHHH-HHHHHHHHHHHHHcCCE-EE
Confidence 4777 69999998763 4899995 77 7889999999999999999 99999999999999998 99
Q ss_pred EEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808 116 CVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 116 ~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~ 188 (203)
+||.|+.+.+++|.++ .+++ ||+++|++++++++||+..... +. ..+.|++|||| +|+|+++++++.+
T Consensus 64 gvS~D~~~~~~~~~~~i~~~~~~~~~--fpil~D~~~~ia~~yg~~~~~~--~~-~~~~r~~fiID~~G~I~~~~~~~~~ 138 (203)
T cd03016 64 GLSVDSVESHIKWIEDIEEYTGVEIP--FPIIADPDREVAKLLGMIDPDA--GS-TLTVRAVFIIDPDKKIRLILYYPAT 138 (203)
T ss_pred EEECCCHHHHHHHHhhHHHhcCCCCc--eeEEECchHHHHHHcCCccccC--CC-CceeeEEEEECCCCeEEEEEecCCC
Confidence 9999999999999876 5675 9999999999999999975321 11 23579999999 9999999998765
Q ss_pred CCcccCCHHHHHhc
Q 028808 189 SKMKVSGGDVILGQ 202 (203)
Q Consensus 189 ~~~~~~~a~~vL~~ 202 (203)
.+ .+.+++|+.
T Consensus 139 ~g---r~~~ell~~ 149 (203)
T cd03016 139 TG---RNFDEILRV 149 (203)
T ss_pred CC---CCHHHHHHH
Confidence 43 245555543
No 13
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.97 E-value=1.9e-29 Score=204.97 Aligned_cols=144 Identities=19% Similarity=0.373 Sum_probs=120.6
Q ss_pred cCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808 36 AVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV 114 (203)
Q Consensus 36 ~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v 114 (203)
.+|++ ||+|++++. +| ++..+++++ ++||++||+|||++|||+|+.| +++|++++++|+++|++ |
T Consensus 3 ~~G~~----aP~f~l~~~~~g-------~~~~~sl~d-~~Gk~vvl~F~p~~~cp~C~~e-l~~l~~~~~~~~~~gv~-v 68 (187)
T TIGR03137 3 LINTE----IKPFKATAYHNG-------EFVEVTDED-VKGKWSVFFFYPADFTFVCPTE-LEDLADKYAELKKLGVE-V 68 (187)
T ss_pred ccCCc----CCCcEeeeccCC-------ceeEecHHH-HCCCEEEEEEECCCcCCcCHHH-HHHHHHHHHHHHhcCCc-E
Confidence 56888 699999984 43 124789999 5999888888889999999999 99999999999999999 9
Q ss_pred EEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808 115 ICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS 189 (203)
Q Consensus 115 i~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~ 189 (203)
|+||.|+++.+++|++.. +++ ||+++|++++++++||+..... |+ ..|++|||| +|+|+++++...+.
T Consensus 69 i~VS~D~~~~~~~~~~~~~~~~~l~--fpllsD~~~~~a~~~gv~~~~~--g~---~~p~tfiID~~G~I~~~~~~~~~~ 141 (187)
T TIGR03137 69 YSVSTDTHFVHKAWHDTSEAIGKIT--YPMLGDPTGVLTRNFGVLIEEA--GL---ADRGTFVIDPEGVIQAVEITDNGI 141 (187)
T ss_pred EEEeCCCHHHHHHHHhhhhhccCcc--eeEEECCccHHHHHhCCcccCC--Cc---eeeEEEEECCCCEEEEEEEeCCCC
Confidence 999999999999998875 465 9999999999999999975421 22 469999999 99999999986553
Q ss_pred CcccCCHHHHHhcC
Q 028808 190 KMKVSGGDVILGQI 203 (203)
Q Consensus 190 ~~~~~~a~~vL~~l 203 (203)
+ .+++++|+.|
T Consensus 142 ~---~~~~~ll~~l 152 (187)
T TIGR03137 142 G---RDASELLRKI 152 (187)
T ss_pred C---CCHHHHHHHH
Confidence 2 4888887753
No 14
>PRK15000 peroxidase; Provisional
Probab=99.96 E-value=5e-29 Score=204.81 Aligned_cols=149 Identities=20% Similarity=0.326 Sum_probs=119.7
Q ss_pred ccCCCccccCCCceEEeccccccCCCCCCc-eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNF-ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~-~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
..+|++ ||+|++.+..| +| +. ..++|+++++||++||+|||++|||+|+.| +++|++++++|+++|++
T Consensus 2 ~~vg~~----aPdF~~~~~~~--~g---~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~E-l~~l~~~~~~f~~~g~~- 70 (200)
T PRK15000 2 VLVTRQ----APDFTAAAVLG--SG---EIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSE-LIAFDKRYEEFQKRGVE- 70 (200)
T ss_pred CcCCCc----CCCCEeecccC--CC---ceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCE-
Confidence 347888 69999998743 12 11 246777755899999998999999999999 99999999999999999
Q ss_pred EEEEecCCHHHHHHHHHH----hCC-CCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808 114 VICVAVNDPYVMNGWAEK----LQA-KDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA 187 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~----~~l-~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~ 187 (203)
||+||.|+++.+++|.+. .++ +.+||+++|++++++++||+..... | .+.|++|||| +|+|+++++++.
T Consensus 71 vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~--g---~~~r~tfiID~~G~I~~~~~~~~ 145 (200)
T PRK15000 71 VVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDE--G---VALRGSFLIDANGIVRHQVVNDL 145 (200)
T ss_pred EEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCC--C---cEEeEEEEECCCCEEEEEEecCC
Confidence 999999999999999765 342 1149999999999999999975422 2 2579999999 999999999887
Q ss_pred CCCcccCCHHHHHhc
Q 028808 188 PSKMKVSGGDVILGQ 202 (203)
Q Consensus 188 ~~~~~~~~a~~vL~~ 202 (203)
+.+ .+.+++|+.
T Consensus 146 ~~g---r~~~eilr~ 157 (200)
T PRK15000 146 PLG---RNIDEMLRM 157 (200)
T ss_pred CCC---CCHHHHHHH
Confidence 654 366666654
No 15
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.96 E-value=3e-28 Score=194.65 Aligned_cols=145 Identities=18% Similarity=0.303 Sum_probs=119.6
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCC-CCCCCccchhhHHHhHHHHHHcCCc
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAY-TGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~-cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
.+++|++ +|+|++++.+| +.++|++ ++||++ |++||++| ||+|+.| +|.|++++++| .|++
T Consensus 17 ~~~~G~~----~P~f~l~~~~g---------~~v~l~~-~~Gk~v-vl~f~~s~~cp~C~~e-~~~l~~~~~~~--~~~~ 78 (167)
T PRK00522 17 LPQVGDK----APDFTLVANDL---------SDVSLAD-FAGKRK-VLNIFPSIDTGVCATS-VRKFNQEAAEL--DNTV 78 (167)
T ss_pred CCCCCCC----CCCeEEEcCCC---------cEEehHH-hCCCEE-EEEEEcCCCCCccHHH-HHHHHHHHHHc--CCcE
Confidence 5778999 69999999875 8899999 599854 55666666 9999999 99999999998 3898
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccc-cccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLS-AALLGPRSERWSAYVE-DGRIKALNVEEAPS 189 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~-~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~ 189 (203)
|++||.|+++.+++|+++++++ .|++++|. +++++++||+..... ..| ...|++|||| +|+|++.++..+..
T Consensus 79 -vv~vs~D~~~~~~~f~~~~~~~-~~~~lsD~~~~~~~~~~gv~~~~~~~~g---~~~r~tfvId~~G~I~~~~~~~~~~ 153 (167)
T PRK00522 79 -VLCISADLPFAQKRFCGAEGLE-NVITLSDFRDHSFGKAYGVAIAEGPLKG---LLARAVFVLDENNKVVYSELVPEIT 153 (167)
T ss_pred -EEEEeCCCHHHHHHHHHhCCCC-CceEeecCCccHHHHHhCCeecccccCC---ceeeEEEEECCCCeEEEEEECCCcC
Confidence 9999999999999999999986 58999995 669999999976431 122 2579999999 99999999876532
Q ss_pred CcccCCHHHHHhcC
Q 028808 190 KMKVSGGDVILGQI 203 (203)
Q Consensus 190 ~~~~~~a~~vL~~l 203 (203)
...+.+++|++|
T Consensus 154 --~~~~~~~~l~~l 165 (167)
T PRK00522 154 --NEPDYDAALAAL 165 (167)
T ss_pred --CCCCHHHHHHHh
Confidence 356888888764
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.95 E-value=9.1e-28 Score=185.74 Aligned_cols=140 Identities=20% Similarity=0.303 Sum_probs=116.5
Q ss_pred cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808 36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115 (203)
Q Consensus 36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi 115 (203)
++|++ ||+|++++.+| +.++|++ ++||++||+||++.|||+|..| ++.|++++++++ |+. ||
T Consensus 1 ~~G~~----aP~f~l~~~~g---------~~~~l~~-~~gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~~--~~~-vi 62 (143)
T cd03014 1 KVGDK----APDFTLVTSDL---------SEVSLAD-FAGKVKVISVFPSIDTPVCATQ-TKRFNKEAAKLD--NTV-VL 62 (143)
T ss_pred CCCCC----CCCcEEECCCC---------cEEeHHH-hCCCeEEEEEEcCCCCCcCHHH-HHHHHHHHHhcC--CCE-EE
Confidence 36888 69999999876 7899999 5999766655555558999999 999999999983 898 99
Q ss_pred EEecCCHHHHHHHHHHhCCCCceEEEeeCC-chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCccc
Q 028808 116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFD-GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKV 193 (203)
Q Consensus 116 ~IS~d~~~~~~~~~~~~~l~~~fpllsD~~-~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~ 193 (203)
+||.|+++.+++|.+++++. +|++++|++ ++++++||+..+.. | .+.|++|||| +|+|++.+++.++. +.
T Consensus 63 ~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~--~---~~~~~~~iid~~G~I~~~~~~~~~~--~~ 134 (143)
T cd03014 63 TISADLPFAQKRWCGAEGVD-NVTTLSDFRDHSFGKAYGVLIKDL--G---LLARAVFVIDENGKVIYVELVPEIT--DE 134 (143)
T ss_pred EEECCCHHHHHHHHHhcCCC-CceEeecCcccHHHHHhCCeeccC--C---ccceEEEEEcCCCeEEEEEECCCcc--cC
Confidence 99999999999999999974 599999996 99999999976432 2 2468999999 99999999987543 35
Q ss_pred CCHHHHHh
Q 028808 194 SGGDVILG 201 (203)
Q Consensus 194 ~~a~~vL~ 201 (203)
.+.+++|+
T Consensus 135 ~~~~~~~~ 142 (143)
T cd03014 135 PDYEAALA 142 (143)
T ss_pred CCHHHHhh
Confidence 68888775
No 17
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.95 E-value=1.1e-27 Score=185.81 Aligned_cols=144 Identities=25% Similarity=0.444 Sum_probs=122.6
Q ss_pred ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
+++|++ +|+|++.+.+| +.++|++ ++| |++||+|||++|||.|..+ ++.|++++++|+++|++
T Consensus 1 ~~~G~~----~p~~~l~~~~g---------~~v~l~~-~~g~k~~vl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~v~- 64 (149)
T cd03018 1 LEVGDK----APDFELPDQNG---------QEVRLSE-FRGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGAE- 64 (149)
T ss_pred CCCCCc----CCCcEecCCCC---------CEEeHHH-HcCCCeEEEEEeCCCCCccHHHH-HHHHHHHHHHHHhCCCE-
Confidence 468998 59999999876 8999999 588 8778888889999999998 99999999999999998
Q ss_pred EEEEecCCHHHHHHHHHHhCCCCceEEEeeCC--chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808 114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD--GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK 190 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~--~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~ 190 (203)
+|+||.|+++.+++|+++++++ ||+++|.+ +++++.||+..... ++ ..|++|||| +|+|++.+.+++...
T Consensus 65 vi~vs~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~g~~~~~~--~~---~~~~~~lid~~G~v~~~~~~~~~~~ 137 (149)
T cd03018 65 VLGISVDSPFSLRAWAEENGLT--FPLLSDFWPHGEVAKAYGVFDEDL--GV---AERAVFVIDRDGIIRYAWVSDDGEP 137 (149)
T ss_pred EEEecCCCHHHHHHHHHhcCCC--ceEecCCCchhHHHHHhCCccccC--CC---ccceEEEECCCCEEEEEEecCCccc
Confidence 9999999999999999999996 99999988 99999999975321 22 346899999 999999999987433
Q ss_pred cccCCHHHHHh
Q 028808 191 MKVSGGDVILG 201 (203)
Q Consensus 191 ~~~~~a~~vL~ 201 (203)
.+....+++|+
T Consensus 138 ~~~~~~~~~~~ 148 (149)
T cd03018 138 RDLPDYDEALD 148 (149)
T ss_pred ccchhHHHHhh
Confidence 44556666654
No 18
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.95 E-value=4.9e-27 Score=188.08 Aligned_cols=145 Identities=20% Similarity=0.357 Sum_probs=118.5
Q ss_pred CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808 37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116 (203)
Q Consensus 37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~ 116 (203)
+|++ ||+|++++.+|. ++++.++|++ ++||++||+||+++|||+|..| ++.|++++++|+++|++ |++
T Consensus 1 vG~~----aP~f~~~~~~g~-----~~~~~~~l~~-~~Gk~vvl~F~~~~~c~~C~~~-l~~l~~~~~~~~~~~v~-vv~ 68 (173)
T cd03015 1 VGKK----APDFKATAVVPN-----GEFKEISLSD-YKGKWVVLFFYPLDFTFVCPTE-IIAFSDRYEEFKKLNAE-VLG 68 (173)
T ss_pred CCCc----CCCCEeecccCC-----CCceEEehHH-hCCCEEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EEE
Confidence 5777 699999987630 1226899999 5999777776679999999999 99999999999999998 999
Q ss_pred EecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808 117 VAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 117 IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~ 188 (203)
||.|+.+.+++|.+.. +++ ||+++|++++++++||+..... | ...|++|||| +|+|++++++..+
T Consensus 69 Is~d~~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~~--~---~~~p~~~lID~~G~I~~~~~~~~~ 141 (173)
T cd03015 69 VSTDSHFSHLAWRNTPRKEGGLGKIN--FPLLADPKKKISRDYGVLDEEE--G---VALRGTFIIDPEGIIRHITVNDLP 141 (173)
T ss_pred EecCCHHHHHHHHHhhhhhCCccCcc--eeEEECCchhHHHHhCCccccC--C---ceeeEEEEECCCCeEEEEEecCCC
Confidence 9999988888898774 465 9999999999999999976421 2 2468899999 9999999998765
Q ss_pred CCcccCCHHHHHhcC
Q 028808 189 SKMKVSGGDVILGQI 203 (203)
Q Consensus 189 ~~~~~~~a~~vL~~l 203 (203)
.+ ++.+++|+.|
T Consensus 142 ~~---~~~~~il~~l 153 (173)
T cd03015 142 VG---RSVDETLRVL 153 (173)
T ss_pred CC---CCHHHHHHHH
Confidence 32 4566676643
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=2.4e-27 Score=183.74 Aligned_cols=142 Identities=25% Similarity=0.384 Sum_probs=118.6
Q ss_pred cCCCccccCCCceEEec--cccccCCCCCCceeeecccccCCCeEEEEEeeCC-CCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 36 AVGSDIVSAAQDVSLQK--ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGA-YTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 36 ~~G~~~~~~APdf~l~~--~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~-~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
|+|++ +|+|++++ .+| ++++|++ ++||+ +|++||++ |||+|..| +|.+.+++++++++|++
T Consensus 1 k~G~~----~P~~~~~~~~~~g---------~~~~l~~-~~gk~-~vv~f~~~~~Cp~C~~~-~p~l~~l~~~~~~~~v~ 64 (146)
T PF08534_consen 1 KVGDK----APDFSLKDLDLDG---------KPVSLSD-FKGKP-VVVNFWASAWCPPCRKE-LPYLNELQEKYKDKGVD 64 (146)
T ss_dssp STTSB------CCEEEEEETTS---------EEEEGGG-GTTSE-EEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTCE
T ss_pred CCCCC----CCCeEEEeecCCC---------CEecHHH-hCCCe-EEEEEEccCCCCcchhh-hhhHHhhhhhhccCceE
Confidence 57999 59999976 665 9999999 69995 66678888 99999999 99999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM 191 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~ 191 (203)
+++|+.++...+.+|.++++++ ||++.|++++++++||+...... +.+ ...|++|||| ||+|++++.+..+ +
T Consensus 65 -~v~v~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~-~~~-~~~P~~~lId~~G~V~~~~~g~~~-~- 137 (146)
T PF08534_consen 65 -VVGVSSDDDPPVREFLKKYGIN--FPVLSDPDGALAKALGVTIMEDP-GNG-FGIPTTFLIDKDGKVVYRHVGPDP-D- 137 (146)
T ss_dssp -EEEEEESSSHHHHHHHHHTTTT--SEEEEETTSHHHHHTTCEEECCT-TTT-SSSSEEEEEETTSBEEEEEESSBT-T-
T ss_pred -EEEecccCCHHHHHHHHhhCCC--ceEEechHHHHHHHhCCcccccc-ccC-CeecEEEEEECCCEEEEEEeCCCC-C-
Confidence 9999998766699999999986 99999999999999998643211 111 2468899999 9999999999876 3
Q ss_pred ccCCHHHHH
Q 028808 192 KVSGGDVIL 200 (203)
Q Consensus 192 ~~~~a~~vL 200 (203)
+.+++++||
T Consensus 138 ~~~~~~~~l 146 (146)
T PF08534_consen 138 EESDLEAVL 146 (146)
T ss_dssp SHHSHHHHH
T ss_pred CCCChhhcC
Confidence 678999887
No 20
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.95 E-value=2.9e-27 Score=193.89 Aligned_cols=148 Identities=17% Similarity=0.318 Sum_probs=119.8
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
..+.+|++ ||+|++.+... ++.+++++|++ ++||++||+|||++|||+|..| +++|++++++|+++|++
T Consensus 4 ~~~~~G~~----aPdF~~~~~~~-----~~~~~~v~l~d-~~Gk~~lL~F~p~~~~~~C~~e-~~~l~~~~~~f~~~g~~ 72 (199)
T PTZ00253 4 GDAKINHP----APSFEEVALMP-----NGSFKKISLSS-YKGKWVVLFFYPLDFTFVCPTE-IIQFSDSVKRFNELNCE 72 (199)
T ss_pred cccccCCc----CCCCEeecccc-----CCCCcEEeHHH-HCCCEEEEEEEcCCCCCcCHHH-HHHHHHHHHHHHHcCCE
Confidence 34678999 69999876410 01127899999 5999999988889999999999 99999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 113 SVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
||+||+|+.+.+.+|..+. ++ +||+++|+++++++.||+..... | ...|++|||| +|+|++.++
T Consensus 73 -vv~IS~d~~~~~~~~~~~~~~~~~~~~~--~fpll~D~~~~ia~~ygv~~~~~--g---~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 73 -VLACSMDSEYAHLQWTLQERKKGGLGTM--AIPMLADKTKSIARSYGVLEEEQ--G---VAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred -EEEEeCCCHHHHHHHHhChHhhCCcccc--ccceEECcHhHHHHHcCCcccCC--C---ceEEEEEEECCCCEEEEEEe
Confidence 9999999999899986432 25 49999999999999999975422 2 2469999999 999999999
Q ss_pred ecCCCCcccCCHHHHHhc
Q 028808 185 EEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 185 ~~~~~~~~~~~a~~vL~~ 202 (203)
++.+.+ .+.+++|+.
T Consensus 145 ~~~~~~---r~~~e~l~~ 159 (199)
T PTZ00253 145 NDMPVG---RNVEEVLRL 159 (199)
T ss_pred cCCCCC---CCHHHHHHH
Confidence 876543 355555554
No 21
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.95 E-value=7.4e-27 Score=183.07 Aligned_cols=149 Identities=22% Similarity=0.335 Sum_probs=121.0
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
..+++|++ +|+|++++.+| +.++|++ ++||++||+|+++.|||+|..+ ++.|++++++|+++|++
T Consensus 2 ~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk~~ll~f~~~~~~p~C~~~-~~~l~~~~~~~~~~~v~ 66 (154)
T PRK09437 2 NPLKAGDI----APKFSLPDQDG---------EQVSLTD-FQGQRVLVYFYPKAMTPGCTVQ-ACGLRDNMDELKKAGVV 66 (154)
T ss_pred CcCCCCCc----CCCcEeeCCCC---------CEEeHHH-hCCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCCE
Confidence 46788999 69999999886 7899999 5998655544445689999999 99999999999999998
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKALNVEEAPSK 190 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~~~~~~~~~ 190 (203)
+|+||.|+++.+++|+++++++ ||+++|+++.++++||+.......+.+ ....|++|||| +|+|++++.+..+.
T Consensus 67 -vi~Is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~- 142 (154)
T PRK09437 67 -VLGISTDKPEKLSRFAEKELLN--FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS- 142 (154)
T ss_pred -EEEEcCCCHHHHHHHHHHhCCC--CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc-
Confidence 9999999999999999999996 999999999999999997643211111 11357899999 99999999876543
Q ss_pred cccCCHHHHHhcC
Q 028808 191 MKVSGGDVILGQI 203 (203)
Q Consensus 191 ~~~~~a~~vL~~l 203 (203)
++-+++|+++
T Consensus 143 ---~~~~~~~~~~ 152 (154)
T PRK09437 143 ---NHHDVVLDYL 152 (154)
T ss_pred ---hhHHHHHHHH
Confidence 4567777653
No 22
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=3.3e-27 Score=182.33 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=110.2
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
+|+|++++.+| +.++++++.+++++||+|||++|||+|..| ++.|++++++|+++|+. ||+||.|+.+.
T Consensus 2 ~p~f~l~~~~g---------~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~-~~~l~~~~~~~~~~~v~-vv~V~~~~~~~ 70 (149)
T cd02970 2 APDFELPDAGG---------ETVTLSALLGEGPVVVVFYRGFGCPFCREY-LRALSKLLPELDALGVE-LVAVGPESPEK 70 (149)
T ss_pred CCCccccCCCC---------CEEchHHHhcCCCEEEEEECCCCChhHHHH-HHHHHHHHHHHHhcCeE-EEEEeCCCHHH
Confidence 79999999876 889999964567899999999999999999 99999999999999998 99999999988
Q ss_pred HHHHHHHhCCCCceEEEeeCCchHHHHcCCcccccc------------------ccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSA------------------ALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~------------------~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
+.+|.++++++ ||+++|+++++.++||+...... .+......|++|||| +|+|+|.|++
T Consensus 71 ~~~~~~~~~~~--~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 71 LEAFDKGKFLP--FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHhcCCC--CeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 88999999996 99999999999999999642210 000112578999999 9999999975
No 23
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=2.3e-26 Score=176.57 Aligned_cols=137 Identities=24% Similarity=0.331 Sum_probs=116.3
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
+|+|++++.+| +.++|++ ++||++||+||+++|||+|..+ ++.|++++++|+++|++ ||+||.|+++.
T Consensus 3 ~p~f~l~~~~g---------~~~~l~~-~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~-vv~is~d~~~~ 70 (140)
T cd03017 3 APDFTLPDQDG---------ETVSLSD-LRGKPVVLYFYPKDDTPGCTKE-ACDFRDLYEEFKALGAV-VIGVSPDSVES 70 (140)
T ss_pred CCCccccCCCC---------CEEeHHH-hCCCcEEEEEeCCCCCCchHHH-HHHHHHHHHHHHHCCCE-EEEEcCCCHHH
Confidence 79999999876 8999999 5898666655558999999998 99999999999999998 99999999999
Q ss_pred HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHh
Q 028808 125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILG 201 (203)
Q Consensus 125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~ 201 (203)
+++|+++++++ ||+++|++++++++||+...... + .....|++|||| +|+|++++.+..+ ..+.+++|+
T Consensus 71 ~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~-~-~~~~~p~~~lid~~G~v~~~~~g~~~----~~~~~~~~~ 140 (140)
T cd03017 71 HAKFAEKYGLP--FPLLSDPDGKLAKAYGVWGEKKK-K-YMGIERSTFLIDPDGKIVKVWRKVKP----KGHAEEVLE 140 (140)
T ss_pred HHHHHHHhCCC--ceEEECCccHHHHHhCCcccccc-c-cCCcceeEEEECCCCEEEEEEecCCc----cchHHHHhC
Confidence 99999999996 99999999999999999764221 1 112468899999 9999999987654 367777764
No 24
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.94 E-value=1.4e-26 Score=173.94 Aligned_cols=123 Identities=27% Similarity=0.487 Sum_probs=108.8
Q ss_pred CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808 37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116 (203)
Q Consensus 37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~ 116 (203)
+|++ +|+|++++.+| +.++|+++ +||++||+||+.+|||.|..+ +++|++++++|+++|++ +++
T Consensus 1 vG~~----~P~f~l~~~~g---------~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~-l~~l~~~~~~~~~~~~~-vi~ 64 (124)
T PF00578_consen 1 VGDK----APDFTLTDSDG---------KTVSLSDL-KGKPVVLFFWPTAWCPFCQAE-LPELNELYKKYKDKGVQ-VIG 64 (124)
T ss_dssp TTSB----GGCEEEETTTS---------EEEEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTEE-EEE
T ss_pred CcCC----CCCcEeECCCC---------CEEEHHHH-CCCcEEEEEeCccCccccccc-hhHHHHHhhhhccceEE-eee
Confidence 5888 59999999876 89999995 999777766666699999999 99999999999999998 999
Q ss_pred EecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808 117 VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL 182 (203)
Q Consensus 117 IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~ 182 (203)
||.|+++.+++|.++++++ ||+++|++++++++||+..... ....|++|||| +|+|+|+
T Consensus 65 is~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~-----~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 65 ISTDDPEEIKQFLEEYGLP--FPVLSDPDGELAKAFGIEDEKD-----TLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp EESSSHHHHHHHHHHHTCS--SEEEEETTSHHHHHTTCEETTT-----SEESEEEEEEETTSBEEEE
T ss_pred cccccccchhhhhhhhccc--cccccCcchHHHHHcCCccccC-----CceEeEEEEECCCCEEEeC
Confidence 9999999999999999986 9999999999999999975321 12468999999 9999985
No 25
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.94 E-value=4.7e-26 Score=174.57 Aligned_cols=136 Identities=29% Similarity=0.514 Sum_probs=116.2
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
+|+|++.+.+| ++++|+++ +||++||+|+++.|||+|..+ ++.|++++++|++.|++ +|+||.|++..
T Consensus 2 ~p~f~l~~~~g---------~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~~~-~i~is~d~~~~ 69 (140)
T cd02971 2 APDFTLPATDG---------GEVSLSDF-KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGAE-VLGVSVDSPFS 69 (140)
T ss_pred CCCceeccCCC---------cEEehHHh-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence 69999999876 89999995 898777766669999999999 99999999999989998 99999999999
Q ss_pred HHHHHHHh-CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHH
Q 028808 125 MNGWAEKL-QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVI 199 (203)
Q Consensus 125 ~~~~~~~~-~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~v 199 (203)
+++|++++ +.+ |++++|+++.++++||+...... + +....|++|||| +|+|++++.+.++. .+..+.+
T Consensus 70 ~~~~~~~~~~~~--~~~l~D~~~~~~~~~g~~~~~~~-~-~~~~~p~~~lid~~g~i~~~~~~~~~~---~~~~~~~ 139 (140)
T cd02971 70 HKAWAEKEGGLN--FPLLSDPDGEFAKAYGVLIEKSA-G-GGLAARATFIIDPDGKIRYVEVEPLPT---GRNAEEL 139 (140)
T ss_pred HHHHHhcccCCC--ceEEECCChHHHHHcCCcccccc-c-cCceeEEEEEECCCCcEEEEEecCCCC---CcChHhh
Confidence 99999999 775 99999999999999999864321 1 123578999999 99999999998763 4555554
No 26
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.5e-25 Score=173.17 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=122.2
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
..+++||.+ |||+|+|.+| +.++|.++-.+|+||+++||++-+|.|++| .+.|++.|++|++.|.+
T Consensus 61 ~~v~~Gd~i----PD~tL~dedg---------~sisLkkit~nk~vV~f~YP~asTPGCTkQ-aCgFRDnY~k~kka~ae 126 (211)
T KOG0855|consen 61 LKVNKGDAI----PDFTLKDEDG---------KSISLKKITGNKPVVLFFYPAASTPGCTKQ-ACGFRDNYEKFKKAGAE 126 (211)
T ss_pred eeeecCCcC----CCcccccCCC---------CeeeeeeecCCCcEEEEEeccCCCCCcccc-cccccccHHHHhhcCce
Confidence 368999995 9999999886 899999964445899999999999999999 89999999999999998
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCC-EEEEEEeecCCCCc
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG-RIKALNVEEAPSKM 191 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG-~I~~~~~~~~~~~~ 191 (203)
|+|+|.|+..++++|+.+++++ |.+|||+.+++.+.+|+..++- |....|.+||.|+| ..+.+.......+.
T Consensus 127 -V~GlS~D~s~sqKaF~sKqnlP--YhLLSDpk~e~ik~lGa~k~p~----gg~~~Rsh~if~kg~~k~~ik~~~isPev 199 (211)
T KOG0855|consen 127 -VIGLSGDDSASQKAFASKQNLP--YHLLSDPKNEVIKDLGAPKDPF----GGLPGRSHYIFDKGGVKQLIKNNQISPEV 199 (211)
T ss_pred -EEeeccCchHHHHHhhhhccCC--eeeecCcchhHHHHhCCCCCCC----CCcccceEEEEecCCeEEEEEecccCccc
Confidence 9999999999999999999998 9999999999999999987531 22357999999944 43333333333345
Q ss_pred ccCCHHHHHh
Q 028808 192 KVSGGDVILG 201 (203)
Q Consensus 192 ~~~~a~~vL~ 201 (203)
++.+|.++|.
T Consensus 200 svd~a~k~~~ 209 (211)
T KOG0855|consen 200 SVDEALKFLK 209 (211)
T ss_pred cHHHHHHHHh
Confidence 6666666654
No 27
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=171.89 Aligned_cols=150 Identities=17% Similarity=0.284 Sum_probs=126.5
Q ss_pred ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808 35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV 114 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v 114 (203)
+.+.++ ||+|+-+..- ++.++.++|++| +||+||++|||.+|+.+|..| +-.|.+.+++|++.|++ |
T Consensus 4 ~~~~~p----~p~fk~~aVV------dG~f~e~~L~dy-~gkyvvlfFyplDftfVcPte-IiafSd~~~eF~~~n~e-V 70 (196)
T KOG0852|consen 4 EVVFKP----APDFKGTAVV------DGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTE-IIAFSDRAPEFRKLNTE-V 70 (196)
T ss_pred cccCCC----CCCcceeEEE------cCcceEEeehhh-cccEEEEEecCCceeeECchh-hhhhhhhHHHHHhcCCe-E
Confidence 444555 7999987753 457899999995 999999999999999999999 99999999999999999 9
Q ss_pred EEEecCCHHHHHHHHH----HhCCC-CceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808 115 ICVAVNDPYVMNGWAE----KLQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 115 i~IS~d~~~~~~~~~~----~~~l~-~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~ 188 (203)
+++|+|+.+.|.+|+. +-|+. .++|+++|.+.++++.||++.++. |. +.|..|||| +|.++++.+++-+
T Consensus 71 ig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~--G~---~lRglfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 71 LGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDE--GI---ALRGLFIIDPDGILRQITINDLP 145 (196)
T ss_pred EEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCC--Cc---ceeeeEEEccccceEEeeecccC
Confidence 9999999999999964 33442 369999999999999999998654 32 679999999 9999999999988
Q ss_pred CCcccCCHHHHHhc
Q 028808 189 SKMKVSGGDVILGQ 202 (203)
Q Consensus 189 ~~~~~~~a~~vL~~ 202 (203)
.+.+++.+-+++++
T Consensus 146 vgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 146 VGRSVDETLRLVQA 159 (196)
T ss_pred CCccHHHHHHHHHH
Confidence 77566666655543
No 28
>PLN02412 probable glutathione peroxidase
Probab=99.92 E-value=9.5e-25 Score=174.45 Aligned_cols=127 Identities=12% Similarity=0.180 Sum_probs=101.3
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---- 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---- 120 (203)
+|+|++++.+| +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|+. |++||.|
T Consensus 9 ~pdf~l~d~~G---------~~v~l~~-~~gk-~vlv~f~a~~C~~c~~e-~~~l~~l~~~~~~~g~~-vvgv~~~~~~~ 75 (167)
T PLN02412 9 IYDFTVKDIGG---------NDVSLNQ-YKGK-VLLIVNVASKCGLTDSN-YKELNVLYEKYKEQGFE-ILAFPCNQFLG 75 (167)
T ss_pred CCceEEECCCC---------CEEeHHH-hCCC-EEEEEEeCCCCCChHHH-HHHHHHHHHHHhhCCcE-EEEeccccccc
Confidence 79999999886 8999999 5997 78889999999999999 99999999999999998 9999974
Q ss_pred ----CHHH-HHHHHHHhCCCCceEEEee--CCc-hHHHHcCCcccccc--ccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 121 ----DPYV-MNGWAEKLQAKDVIEFYGD--FDG-SFHKSLDLGKDLSA--ALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 121 ----~~~~-~~~~~~~~~l~~~fpllsD--~~~-~v~~~yGv~~~~~~--~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
+... ++.|+++++++ ||+++| .++ ..++.|+....... .+.+....|++|||| +|+|++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~ 150 (167)
T PLN02412 76 QEPGSNEEIQQTVCTRFKAE--FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPT 150 (167)
T ss_pred CCCCCHHHHHHHHHHccCCC--CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCC
Confidence 3433 45567999996 999984 564 77888875432110 011123468999999 99999999865
No 29
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.91 E-value=1.5e-24 Score=170.21 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=99.6
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---- 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---- 120 (203)
+|+|++++.+| ++++|++ ++|| +||++||++||| |..| +|.|++++++|+++|+. |++||.|
T Consensus 2 ~~~f~l~d~~G---------~~v~l~~-~~Gk-~vvl~fwatwC~-C~~e-~p~l~~l~~~~~~~~~~-vv~v~~~~~~~ 67 (152)
T cd00340 2 IYDFSVKDIDG---------EPVSLSK-YKGK-VLLIVNVASKCG-FTPQ-YEGLEALYEKYKDRGLV-VLGFPCNQFGG 67 (152)
T ss_pred cceeEEECCCC---------CEEeHHH-hCCC-EEEEEEEcCCCC-chHH-HHHHHHHHHHhcCCCEE-EEEeccCcccc
Confidence 59999999886 8999999 5998 677889999999 9999 99999999999999998 9999864
Q ss_pred ----CHHHHHHHHHH-hCCCCceEEEeeC--Cch-HHHHcCCccccccc--cCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 121 ----DPYVMNGWAEK-LQAKDVIEFYGDF--DGS-FHKSLDLGKDLSAA--LLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 121 ----~~~~~~~~~~~-~~l~~~fpllsD~--~~~-v~~~yGv~~~~~~~--g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
+++.+++|+++ ++++ ||+++|. ++. ..+.|+......+. +-..+..|++|||| +|+|++++.+.
T Consensus 68 ~~~~~~~~~~~f~~~~~~~~--fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 68 QEPGSNEEIKEFCETNYGVT--FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred CCCCCHHHHHHHHHHhcCCC--ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence 46789999997 7996 9999874 444 56667642211000 00112356899999 99999999875
No 30
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.91 E-value=2e-24 Score=174.88 Aligned_cols=129 Identities=13% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---- 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---- 120 (203)
+|+|++++.+| +.++|++ ++||++||+++|++|||+|..| +|.|++++++|+++|+. |++||+|
T Consensus 20 ~p~f~l~d~~G---------~~vsLs~-~~Gk~vvlv~n~atwCp~C~~e-~p~l~~l~~~~~~~gv~-vv~vs~~~~~~ 87 (183)
T PTZ00256 20 FFEFEAIDIDG---------QLVQLSK-FKGKKAIIVVNVACKCGLTSDH-YTQLVELYKQYKSQGLE-ILAFPCNQFME 87 (183)
T ss_pred ccceEeEcCCC---------CEEeHHH-hCCCcEEEEEEECCCCCchHHH-HHHHHHHHHHHhhCCcE-EEEEecccccc
Confidence 69999999886 8999999 5999777777799999999999 99999999999999998 9999975
Q ss_pred ----CHHHHHHHH-HHhCCCCceEEEee--CCchH-HHHcCCcccccc------ccC-CCCcceEEEEEe-CCEEEEEEe
Q 028808 121 ----DPYVMNGWA-EKLQAKDVIEFYGD--FDGSF-HKSLDLGKDLSA------ALL-GPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 121 ----~~~~~~~~~-~~~~l~~~fpllsD--~~~~v-~~~yGv~~~~~~------~g~-~~~~~r~tfIId-dG~I~~~~~ 184 (203)
+.+..++|. ++++++ ||+++| .++.. .+.|+...+... .+. +.-..|++|||| +|+|+++++
T Consensus 88 ~~~~~~~~~~~f~~~~~~~~--fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 88 QEPWDEPEIKEYVQKKFNVD--FPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred cCCCCHHHHHHHHHHhcCCC--CCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 345677786 478996 999976 55543 344432211100 001 111134689999 999999998
Q ss_pred ecC
Q 028808 185 EEA 187 (203)
Q Consensus 185 ~~~ 187 (203)
+..
T Consensus 166 g~~ 168 (183)
T PTZ00256 166 PKV 168 (183)
T ss_pred CCC
Confidence 753
No 31
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.91 E-value=1.1e-23 Score=172.98 Aligned_cols=131 Identities=14% Similarity=0.218 Sum_probs=102.4
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
..-..|+. +|+|++++.+| +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|++
T Consensus 11 ~~~~~~~~----~pdf~l~d~~G---------~~vsL~~-~kGk-vvlv~fwAswC~~C~~e-~p~L~~l~~~~~~~g~~ 74 (199)
T PTZ00056 11 SKDELRKS----IYDYTVKTLEG---------TTVPMSS-LKNK-VLMITNSASKCGLTKKH-VDQMNRLHSVFNPLGLE 74 (199)
T ss_pred cchhcCCC----CCceEEECCCC---------CEEeHHH-hCCC-EEEEEEECCCCCChHHH-HHHHHHHHHHHhcCceE
Confidence 34456677 69999999886 8999999 5998 78889999999999999 99999999999999998
Q ss_pred EEEEEec--------CCHHHHHHHHHHhCCCCceEEEeeC------CchHH--------HHcCCccccccccCCCCcceE
Q 028808 113 SVICVAV--------NDPYVMNGWAEKLQAKDVIEFYGDF------DGSFH--------KSLDLGKDLSAALLGPRSERW 170 (203)
Q Consensus 113 ~vi~IS~--------d~~~~~~~~~~~~~l~~~fpllsD~------~~~v~--------~~yGv~~~~~~~g~~~~~~r~ 170 (203)
||+||+ ++++.+++|+++++++ ||+++|. ...+. +.|+..... .++ ...++
T Consensus 75 -vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~--~~i--~~~~~ 147 (199)
T PTZ00056 75 -ILAFPTSQFLNQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGENTHELFKFLKANCDSMHDENGTL--KAI--GWNFG 147 (199)
T ss_pred -EEEecchhccCCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCCccCHHHHHHHHhCcccccccccC--Ccc--CCCCE
Confidence 999996 5678899999999996 9999873 22222 223332110 011 12357
Q ss_pred EEEEe-CCEEEEEEeec
Q 028808 171 SAYVE-DGRIKALNVEE 186 (203)
Q Consensus 171 tfIId-dG~I~~~~~~~ 186 (203)
+|||| +|+|++.+.+.
T Consensus 148 tflID~~G~iv~~~~g~ 164 (199)
T PTZ00056 148 KFLVNKSGNVVAYFSPR 164 (199)
T ss_pred EEEECCCCcEEEEeCCC
Confidence 99999 99999998764
No 32
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.90 E-value=1.1e-23 Score=165.33 Aligned_cols=122 Identities=11% Similarity=0.218 Sum_probs=96.5
Q ss_pred CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec------
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV------ 119 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~------ 119 (203)
=+|++++.+| ++++|++ ++|| +||++||++|||+|..| +|.+++++++|+++|+. |++|++
T Consensus 3 ~~f~l~~~~G---------~~~~l~~-~~Gk-~vvv~~~as~C~~c~~~-~~~l~~l~~~~~~~~~~-v~~i~~~~~~~~ 69 (153)
T TIGR02540 3 YSFEVKDARG---------RTVSLEK-YRGK-VSLVVNVASECGFTDQN-YRALQELHRELGPSHFN-VLAFPCNQFGES 69 (153)
T ss_pred ccceeECCCC---------CEecHHH-hCCC-EEEEEEeCCCCCchhhh-HHHHHHHHHHHhhCCeE-EEEEeccccccC
Confidence 4799999886 8999999 5998 56778999999999999 99999999999999998 999995
Q ss_pred --CCHHHHHHHHHH-hCCCCceEEEeeC---CchH--HHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 120 --NDPYVMNGWAEK-LQAKDVIEFYGDF---DGSF--HKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 120 --d~~~~~~~~~~~-~~l~~~fpllsD~---~~~v--~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
|+++.+++|+++ ++++ ||+++|. +... +..|++... .+.+ ...|++|||| +|+|++++.+.
T Consensus 70 ~~d~~~~~~~f~~~~~~~~--fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p-~~~~~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 70 EPDSSKEIESFARRNYGVT--FPMFSKIKILGSEAEPAFRFLVDSS---KKEP-RWNFWKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred CCCCHHHHHHHHHHhcCCC--CCccceEecCCCCCCcHHHHHHhcC---CCCC-CCccEEEEEcCCCcEEEEECCC
Confidence 567889999986 8996 9999883 2333 333433211 0111 2256799999 99999999765
No 33
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.89 E-value=2.8e-23 Score=174.50 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=104.0
Q ss_pred ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808 35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV 114 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v 114 (203)
...|+. +|+|++++.+| +.++|++ ++|| +||++||++|||+|..| +|+|++++++|+++|++ |
T Consensus 73 ~~~g~~----aPdF~l~d~~G---------~~vsLsd-~kGK-~vvl~FwAswCp~c~~e-~p~L~~L~~~~~~~Gv~-V 135 (236)
T PLN02399 73 AATEKS----VHDFTVKDIDG---------KDVALSK-FKGK-VLLIVNVASKCGLTSSN-YSELSHLYEKYKTQGFE-I 135 (236)
T ss_pred hhcCCC----CCceEEECCCC---------CEEeHHH-hCCC-eEEEEEEcCCCcchHHH-HHHHHHHHHHHhcCCcE-E
Confidence 457888 69999999986 8999999 5997 78889999999999999 99999999999999998 9
Q ss_pred EEEecC--------CHHHHHHHH-HHhCCCCceEEEee--CCc-hHHHHcCCcccccc--ccCCCCcceEEEEEe-CCEE
Q 028808 115 ICVAVN--------DPYVMNGWA-EKLQAKDVIEFYGD--FDG-SFHKSLDLGKDLSA--ALLGPRSERWSAYVE-DGRI 179 (203)
Q Consensus 115 i~IS~d--------~~~~~~~~~-~~~~l~~~fpllsD--~~~-~v~~~yGv~~~~~~--~g~~~~~~r~tfIId-dG~I 179 (203)
|+|+.| +...+++|+ ++++++ ||++.| .++ ..+..|+....... .|...+..|++|||| +|+|
T Consensus 136 IgV~~d~~~~~e~~s~~ei~~f~~~~~g~~--fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV 213 (236)
T PLN02399 136 LAFPCNQFGGQEPGSNPEIKQFACTRFKAE--FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV 213 (236)
T ss_pred EEEecccccccCCCCHHHHHHHHHHhcCCC--CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE
Confidence 999964 456788997 688996 999964 445 45566654311000 010113357899999 9999
Q ss_pred EEEEeec
Q 028808 180 KALNVEE 186 (203)
Q Consensus 180 ~~~~~~~ 186 (203)
++++.+.
T Consensus 214 v~~~~G~ 220 (236)
T PLN02399 214 VERYPPT 220 (236)
T ss_pred EEEECCC
Confidence 9999864
No 34
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.89 E-value=2.8e-23 Score=157.91 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=94.3
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec------CCHHHHHHHHHHhCCCCce
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV------NDPYVMNGWAEKLQAKDVI 138 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~------d~~~~~~~~~~~~~l~~~f 138 (203)
++++|+++ +|| ++|++||++|||+|..+ +|.|++++++|+++|+. ||+|+. ++++.+++|+++++++ |
T Consensus 14 ~~v~l~~~-~gk-~vvl~F~a~~C~~C~~~-~p~l~~l~~~~~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~~~~~~--~ 87 (126)
T cd03012 14 KPLSLAQL-RGK-VVLLDFWTYCCINCLHT-LPYLTDLEQKYKDDGLV-VIGVHSPEFAFERDLANVKSAVLRYGIT--Y 87 (126)
T ss_pred CccCHHHh-CCC-EEEEEEECCCCccHHHH-HHHHHHHHHHcCcCCeE-EEEeccCccccccCHHHHHHHHHHcCCC--C
Confidence 68999995 997 67778899999999999 99999999999999998 999986 3577899999999997 9
Q ss_pred EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 139 EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 139 pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
|+++|++++++++||+.. .|++|||| +|+|+++++++
T Consensus 88 p~~~D~~~~~~~~~~v~~-----------~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 88 PVANDNDYATWRAYGNQY-----------WPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CEEECCchHHHHHhCCCc-----------CCeEEEECCCCcEEEEEecC
Confidence 999999999999999842 47899999 99999999874
No 35
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.89 E-value=3.9e-23 Score=167.51 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=101.9
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
....+|++ +|+|++++.+| .| +.+++.++.+|| ++|++||++|||+|..| +|.++++ +++|++
T Consensus 37 ~~~~~g~~----~p~f~l~~~~g--~g-----~~~~~~~~~~gk-~vvv~FwatwC~~C~~e-~p~l~~l----~~~~~~ 99 (185)
T PRK15412 37 ESALIGKP----VPKFRLESLEN--PG-----QFYQADVLTQGK-PVLLNVWATWCPTCRAE-HQYLNQL----SAQGIR 99 (185)
T ss_pred chhhcCCC----CCCcCCccCCC--CC-----ccccHHHhcCCC-EEEEEEECCCCHHHHHH-HHHHHHH----HHcCCE
Confidence 35678998 59999999874 12 567777644787 67888999999999999 9999775 456898
Q ss_pred EEEEEecC-CHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808 113 SVICVAVN-DPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA 187 (203)
Q Consensus 113 ~vi~IS~d-~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~ 187 (203)
|++|+.+ +.+.+++|.++++++ || ++.|+++.++++||+.. .|++|||| +|+|++.+.++.
T Consensus 100 -vi~v~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~-----------~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 100 -VVGMNYKDDRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVYG-----------APETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred -EEEEECCCCHHHHHHHHHHcCCC--CceEEEcCCccHHHhcCCCc-----------CCeEEEECCCceEEEEEecCC
Confidence 9999975 467789999999997 88 58899999999999853 47899999 999999999864
No 36
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.88 E-value=4.2e-22 Score=158.87 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=103.0
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC---
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND--- 121 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~--- 121 (203)
+|+|++.+.+| ++++|+++.+|+ ++|++||++|||.|..+ ++.|++++++|+++++. +|+||.|+
T Consensus 4 ~p~f~l~~~~g---------~~v~l~~~~~~k-~~ll~f~~t~Cp~c~~~-~~~l~~l~~~~~~~~v~-~v~is~d~~~~ 71 (171)
T cd02969 4 APDFSLPDTDG---------KTYSLADFADGK-ALVVMFICNHCPYVKAI-EDRLNRLAKEYGAKGVA-VVAINSNDIEA 71 (171)
T ss_pred CCCccccCCCC---------CEEeHHHHhCCC-EEEEEEECCCCccHHHH-HHHHHHHHHHHhhCCeE-EEEEecCcccc
Confidence 69999999876 789999942666 67888999999999999 99999999999989998 99999864
Q ss_pred -----HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 122 -----PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 122 -----~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
+...++|+++++++ ||+++|+++.+++.||+.. .|++|||| +|+|++....+
T Consensus 72 ~~~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~-----------~P~~~lid~~G~v~~~~~~~ 129 (171)
T cd02969 72 YPEDSPENMKAKAKEHGYP--FPYLLDETQEVAKAYGAAC-----------TPDFFLFDPDGKLVYRGRID 129 (171)
T ss_pred ccccCHHHHHHHHHHCCCC--ceEEECCchHHHHHcCCCc-----------CCcEEEECCCCeEEEeeccc
Confidence 67889999999997 9999999999999999853 36799999 99999987544
No 37
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.87 E-value=7.5e-22 Score=160.65 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeeccc-ccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKD-IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~d-l~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
.+++|++ ||+|+++|.+| +.+++++ .++|| +++++||++|||+|.++ +|.+++.+++ .|++
T Consensus 45 ~~~vG~~----aP~f~l~d~~G---------~~v~l~~~~~~gk-~vvl~F~atwCp~C~~~-lp~l~~~~~~---~~~~ 106 (189)
T TIGR02661 45 GPDVGDA----APIFNLPDFDG---------EPVRIGGSIAPGR-PTLLMFTAPSCPVCDKL-FPIIKSIARA---EETD 106 (189)
T ss_pred CCCCCCc----CCCcEecCCCC---------CEEeccchhcCCC-EEEEEEECCCChhHHHH-HHHHHHHHHh---cCCc
Confidence 4789998 69999999886 7899953 14888 46667899999999999 9999987653 4788
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM 191 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~ 191 (203)
+++||.|+++.+++|+++++++ ++.+. .+++++++||+.. .|++|||| +|+|++.... -
T Consensus 107 -vv~Is~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~y~v~~-----------~P~~~lID~~G~I~~~g~~-----~ 166 (189)
T TIGR02661 107 -VVMISDGTPAEHRRFLKDHELG--GERYV-VSAEIGMAFQVGK-----------IPYGVLLDQDGKIRAKGLT-----N 166 (189)
T ss_pred -EEEEeCCCHHHHHHHHHhcCCC--cceee-chhHHHHhccCCc-----------cceEEEECCCCeEEEccCC-----C
Confidence 9999999899999999999996 76554 5789999999853 47799999 9999986321 1
Q ss_pred ccCCHHHHHhc
Q 028808 192 KVSGGDVILGQ 202 (203)
Q Consensus 192 ~~~~a~~vL~~ 202 (203)
..++.+++|+.
T Consensus 167 ~~~~le~ll~~ 177 (189)
T TIGR02661 167 TREHLESLLEA 177 (189)
T ss_pred CHHHHHHHHHH
Confidence 35678888775
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.87 E-value=4e-22 Score=159.85 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=100.8
Q ss_pred ccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 31 AYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 31 ~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
..+...+|++ ||+|++++.+| + .+.++++++.+|| +++++||++|||+|..+ +|.+++++ ++|
T Consensus 30 ~~~~~~vG~~----ap~f~l~~~~G--~-----~~~~~~~~~~~gk-~vll~F~a~wC~~C~~~-~p~l~~l~----~~~ 92 (173)
T TIGR00385 30 ALPSALIGKP----VPAFPLAALRE--P-----LQAYTPEAFIQGK-PVLLNVWASWCPPCRAE-HPYLNELA----KDG 92 (173)
T ss_pred cCcchhcCCC----CCCccccccCC--C-----CcccCHHHhcCCC-EEEEEEECCcCHHHHHH-HHHHHHHH----HcC
Confidence 3345678998 69999999875 1 1356767744676 67788999999999999 89887654 468
Q ss_pred CcEEEEEecCC-HHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 111 IDSVICVAVND-PYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 111 v~~vi~IS~d~-~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
++ |++|+.++ ...+++|+++++++ || ++.|++++++++||+.. .|++|+|| ||+|++++.+.
T Consensus 93 ~~-vi~V~~~~~~~~~~~~~~~~~~~--f~~v~~D~~~~~~~~~~v~~-----------~P~~~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 93 LP-IVGVDYKDQSQNALKFLKELGNP--YQAILIDPNGKLGLDLGVYG-----------APETFLVDGNGVILYRHAGP 157 (173)
T ss_pred CE-EEEEECCCChHHHHHHHHHcCCC--CceEEECCCCchHHhcCCee-----------CCeEEEEcCCceEEEEEecc
Confidence 98 99999864 46678999999996 87 67899999999999853 47899999 99999999874
No 39
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.87 E-value=1.1e-21 Score=155.75 Aligned_cols=137 Identities=20% Similarity=0.346 Sum_probs=115.5
Q ss_pred cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
...+++|++ +|+|++.+.+| +.+++++ ++||+ ++++||++|||.|..+ ++.|.+++++|++.++
T Consensus 32 ~~~~~~g~~----~p~~~~~~~~g---------~~~~l~~-~~~k~-~~l~f~a~~C~~C~~~-~~~l~~~~~~~~~~~~ 95 (173)
T PRK03147 32 KEKVQVGKE----APNFVLTDLEG---------KKIELKD-LKGKG-VFLNFWGTWCKPCEKE-MPYMNELYPKYKEKGV 95 (173)
T ss_pred ccccCCCCC----CCCcEeecCCC---------CEEeHHH-cCCCE-EEEEEECCcCHHHHHH-HHHHHHHHHHhhcCCe
Confidence 356889999 59999999886 8899999 58875 6667889999999999 8999999999998889
Q ss_pred cEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808 112 DSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS 189 (203)
Q Consensus 112 ~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~ 189 (203)
+ +++|+.|+. +.+++|.++++++ ||++.|.++++.+.||+.. .|++|+|| +|+|++.+.+..
T Consensus 96 ~-vi~i~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~g~i~~~~~g~~-- 159 (173)
T PRK03147 96 E-IIAVNVDETELAVKNFVNRYGLT--FPVAIDKGRQVIDAYGVGP-----------LPTTFLIDKDGKVVKVITGEM-- 159 (173)
T ss_pred E-EEEEEcCCCHHHHHHHHHHhCCC--ceEEECCcchHHHHcCCCC-----------cCeEEEECCCCcEEEEEeCCC--
Confidence 8 999999865 6789999999996 9999999999999999852 47799999 999999886643
Q ss_pred CcccCCHHHHHhc
Q 028808 190 KMKVSGGDVILGQ 202 (203)
Q Consensus 190 ~~~~~~a~~vL~~ 202 (203)
+.++..+.|+.
T Consensus 160 --~~~~l~~~l~~ 170 (173)
T PRK03147 160 --TEEQLEEYLEK 170 (173)
T ss_pred --CHHHHHHHHHH
Confidence 23455555554
No 40
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.87 E-value=1.2e-21 Score=150.65 Aligned_cols=125 Identities=15% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHHcC---CcEEEEEecC
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKAKG---IDSVICVAVN 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~~g---v~~vi~IS~d 120 (203)
+|+|++.+.+| +.++++++ +|| ++|++||++||+. |..+ ++.|++++++|+++| ++ +++||.|
T Consensus 2 ~p~f~l~~~~g---------~~~~l~~~-~gk-~~vl~f~~~~C~~~C~~~-l~~l~~~~~~~~~~~~~~v~-~v~vs~d 68 (142)
T cd02968 2 GPDFTLTDQDG---------RPVTLSDL-KGK-PVLVYFGYTHCPDVCPTT-LANLAQALKQLGADGGDDVQ-VVFISVD 68 (142)
T ss_pred CCceEEEcCCC---------CEEchHHh-CCC-EEEEEEEcCCCcccCHHH-HHHHHHHHHHhhHhhcCceE-EEEEEEC
Confidence 79999999876 89999995 998 5667789999997 9999 999999999999875 98 9999985
Q ss_pred ----CHHHHHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccc---cCCCCcceEEEEEe-CCEEEEEEe
Q 028808 121 ----DPYVMNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAA---LLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 121 ----~~~~~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~---g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
+++.+++|+++++.+ |++++|++ ..++++||+....... +.+....|++|||| +|+|++++-
T Consensus 69 ~~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 69 PERDTPEVLKAYAKAFGPG--WIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred CCCCCHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 457899999999975 99999985 7899999987643211 00011247899999 999999863
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.86 E-value=5.6e-21 Score=141.80 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=92.7
Q ss_pred CceEEeccccccCCCCCCceeeecccccC-CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFK-GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~-gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
|+|++.+.+| +.++|+++ + || ++|++||++|||+|..+ +|.++++++++++ ++. +++++.++.+.
T Consensus 1 p~f~l~~~~G---------~~~~l~~~-~~gk-~vvl~F~~~wC~~C~~~-~p~l~~~~~~~~~-~~~-vi~v~~~~~~~ 66 (114)
T cd02967 1 PTFDLTTIDG---------APVRIGGI-SPGR-PTLLFFLSPTCPVCKKL-LPVIRSIARAEAD-WLD-VVLASDGEKAE 66 (114)
T ss_pred CCceeecCCC---------CEEEcccc-cCCC-eEEEEEECCCCcchHhH-hHHHHHHHHHhcC-CcE-EEEEeCCCHHH
Confidence 7999999876 88999994 6 87 55667899999999999 9999998888754 577 88888777888
Q ss_pred HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
.++|++++++. .||++.| ..+++.||+.. .|++|||| +|+|++..+
T Consensus 67 ~~~~~~~~~~~-~~p~~~~--~~~~~~~~~~~-----------~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 67 HQRFLKKHGLE-AFPYVLS--AELGMAYQVSK-----------LPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred HHHHHHHhCCC-CCcEEec--HHHHhhcCCCC-----------cCeEEEECCCCeEEeccc
Confidence 99999999985 4898874 56888898842 47899999 999998753
No 42
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.9e-21 Score=152.64 Aligned_cols=149 Identities=15% Similarity=0.250 Sum_probs=125.1
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
..+.+|++ +|+|+..+..| ++.+.|++.+.|.||+..|++|+|+|+.| +.++.++..+|.++|+.
T Consensus 4 ~~l~lgd~----~PNfea~Tt~g----------~i~fhd~~gdSW~vLFSHPaDFTPVCTTE-lgr~Akl~pEF~KRnvK 68 (224)
T KOG0854|consen 4 PRLRLGDT----VPNFEADTTVG----------KIKFHDYLGDSWGVLFSHPADFTPVCTTE-LGRFAKLAPEFDKRNVK 68 (224)
T ss_pred CcccccCc----CCCcccccccc----------ceehhhhcccceEEEecCcccCCcchhHH-HHHHHhhChhhhhcCce
Confidence 34678999 59999987764 79999987778999999999999999999 99999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHhC----C-C--CceEEEeeCCchHHHHcCCccccc--cccCCCCcceEEEEEe-CCEEEEE
Q 028808 113 SVICVAVNDPYVMNGWAEKLQ----A-K--DVIEFYGDFDGSFHKSLDLGKDLS--AALLGPRSERWSAYVE-DGRIKAL 182 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~----l-~--~~fpllsD~~~~v~~~yGv~~~~~--~~g~~~~~~r~tfIId-dG~I~~~ 182 (203)
.+++|+|+.++|+.|.+..+ . + .+||++.|++++++-.||+..... ..|+| .+.|++|||| +-+|+..
T Consensus 69 -lialS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 69 -LIALSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred -EEEeehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEE
Confidence 99999999999999988762 1 1 369999999999999999986432 23454 4689999999 9999999
Q ss_pred EeecCCCCcccCCHHHHHh
Q 028808 183 NVEEAPSKMKVSGGDVILG 201 (203)
Q Consensus 183 ~~~~~~~~~~~~~a~~vL~ 201 (203)
...+...+ ..-++||.
T Consensus 147 ~lYP~ttG---RN~dEiLR 162 (224)
T KOG0854|consen 147 FLYPSTTG---RNFDEILR 162 (224)
T ss_pred EEcccccC---cCHHHHHH
Confidence 99987654 44555554
No 43
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.85 E-value=4.4e-21 Score=145.43 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=97.3
Q ss_pred CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CH
Q 028808 44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DP 122 (203)
Q Consensus 44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~ 122 (203)
.+|+|++++.+| .+ +.+++++ ++|| ++++.||++|||+|..+ +|.++++.+++ +++ |++|+.+ +.
T Consensus 2 ~~p~f~~~~~~g--~~-----~~~~~~~-~~gk-~vvv~F~a~~C~~C~~~-~~~l~~l~~~~---~~~-vv~v~~~~~~ 67 (127)
T cd03010 2 PAPAFSLPALPG--PD-----KTLTSAD-LKGK-PYLLNVWASWCAPCREE-HPVLMALARQG---RVP-IYGINYKDNP 67 (127)
T ss_pred CCCCcccccccC--CC-----ccccHHH-cCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHhc---CcE-EEEEECCCCH
Confidence 379999999875 12 6799999 4898 46677899999999999 99999886654 588 9999974 56
Q ss_pred HHHHHHHHHhCCCCce-EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 123 YVMNGWAEKLQAKDVI-EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 123 ~~~~~~~~~~~l~~~f-pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
+.+++|+++++++ | +++.|.++++++.||+.. .|++|+|| +|+|++++.+.
T Consensus 68 ~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~v~~-----------~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 68 ENALAWLARHGNP--YAAVGFDPDGRVGIDLGVYG-----------VPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred HHHHHHHHhcCCC--CceEEECCcchHHHhcCCCC-----------CCeEEEECCCceEEEEEecc
Confidence 8899999999997 5 577999999999999963 47799999 99999999875
No 44
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-20 Score=146.14 Aligned_cols=142 Identities=20% Similarity=0.325 Sum_probs=119.4
Q ss_pred ccccccccc--cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHh
Q 028808 25 IPTSSRAYA--SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNN 102 (203)
Q Consensus 25 ~~~~~~~~~--~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~ 102 (203)
+...+-... .+++|++ ||+|++.+.+. +.++|.+ +.||+.||..||+-.+|+|..| ...|++.
T Consensus 6 fkgnpv~l~g~~~~vGd~----ap~ftl~~~dL---------~~v~l~~-~~gk~~vi~v~PSiDT~VC~~q-vr~Fn~~ 70 (158)
T COG2077 6 FKGNPVTLKGNEPQVGDK----APDFTLVGKDL---------NDVSLAD-FAGKKKVISVFPSIDTPVCATQ-VRKFNEE 70 (158)
T ss_pred eCCCeEEecCCCCccCCc----CCceEEEcCcc---------cceeccc-cCCceEEEEEccCCCCchhhHH-HHHHHHH
Confidence 344444443 4899999 69999998764 7899999 6999999999999999999999 8999988
Q ss_pred HHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808 103 IDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK 180 (203)
Q Consensus 103 ~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~ 180 (203)
+.++.. .. |++||.|.|+++++||..+|++ |...+||. ++++.++||+...+-+ +.....|++|++| +|+|.
T Consensus 71 aa~~~~--~~-Vl~IS~DLPFAq~RfC~aeGi~-nv~~lSd~r~~~Fge~yGv~I~egp--L~gLlARaV~V~De~g~V~ 144 (158)
T COG2077 71 AAKLGN--TV-VLCISMDLPFAQKRFCGAEGIE-NVITLSDFRDRAFGENYGVLINEGP--LAGLLARAVFVLDENGKVT 144 (158)
T ss_pred HhccCC--cE-EEEEeCCChhHHhhhhhhcCcc-cceEhhhhhhhhhhHhhCEEecccc--ccCeeeeEEEEEcCCCcEE
Confidence 777653 66 9999999999999999999998 89999997 7889999999875321 1123679999999 99999
Q ss_pred EEEeecC
Q 028808 181 ALNVEEA 187 (203)
Q Consensus 181 ~~~~~~~ 187 (203)
|.++.++
T Consensus 145 y~elv~e 151 (158)
T COG2077 145 YSELVPE 151 (158)
T ss_pred EEEccch
Confidence 9998765
No 45
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.83 E-value=5.8e-20 Score=149.04 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=100.8
Q ss_pred ccccCCCccccCCCceEEecc-----ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH
Q 028808 33 ASVAVGSDIVSAAQDVSLQKA-----RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK 107 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~-----~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~ 107 (203)
..+++|+++ |.+++.+- +| | +-..+.++++++ +|| |.|++|||+||++|..| +|.+.++ +
T Consensus 21 ~~~~~~~~~----p~v~~~~~ge~~~~~---~-~~~y~~~~~~~l-~GK-V~lvn~~Aswc~~c~~e-~P~l~~l----~ 85 (184)
T TIGR01626 21 HNLQVEQSV----PSVGVSEYGEIVLSG---K-DTVYQPWGSAEL-AGK-VRVVHHIAGRTSAKEXN-ASLIDAI----K 85 (184)
T ss_pred hhhhcCCcC----CceEecCCceEEEcC---C-cccceeccHHHc-CCC-EEEEEEEecCCChhhcc-chHHHHH----H
Confidence 469999995 99988764 32 1 122478999994 898 89999999999999999 6988886 6
Q ss_pred HcCCcEE------EEEecCCH-H----HHHHHHHHhCCCCceE---EEeeCCchHHHHcCCccccccccCCCCcceEE-E
Q 028808 108 AKGIDSV------ICVAVNDP-Y----VMNGWAEKLQAKDVIE---FYGDFDGSFHKSLDLGKDLSAALLGPRSERWS-A 172 (203)
Q Consensus 108 ~~gv~~v------i~IS~d~~-~----~~~~~~~~~~l~~~fp---llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~t-f 172 (203)
++|+. + ++|+.|+. . -.++|+++.+.+ || ++.|.++.++++||+.. .|.+ |
T Consensus 86 ~~~~~-~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~--~P~~~vllD~~g~v~~~~gv~~-----------~P~T~f 151 (184)
T TIGR01626 86 AAKFP-PVKYQTTTIINADDAIVGTGMFVKSSAKKGKKE--NPWSQVVLDDKGAVKNAWQLNS-----------EDSAII 151 (184)
T ss_pred HcCCC-cccccceEEEECccchhhHHHHHHHHHHHhccc--CCcceEEECCcchHHHhcCCCC-----------CCceEE
Confidence 77898 8 99999863 2 255667777775 77 99999999999999864 2446 8
Q ss_pred EEe-CCEEEEEEeec
Q 028808 173 YVE-DGRIKALNVEE 186 (203)
Q Consensus 173 IId-dG~I~~~~~~~ 186 (203)
||| +|+|++++.|.
T Consensus 152 VIDk~GkVv~~~~G~ 166 (184)
T TIGR01626 152 VLDKTGKVKFVKEGA 166 (184)
T ss_pred EECCCCcEEEEEeCC
Confidence 999 99999999985
No 46
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.82 E-value=4e-20 Score=145.00 Aligned_cols=105 Identities=11% Similarity=0.249 Sum_probs=85.7
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-------CCcEEEEEecCCH-HHHHHHHHHhCCCC
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-------GIDSVICVAVNDP-YVMNGWAEKLQAKD 136 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-------gv~~vi~IS~d~~-~~~~~~~~~~~l~~ 136 (203)
+.++|++ ++|| +|+++|||+|||+|..| +|.|+++|++++++ +++ ||+||.|.. ..+++|.++++++.
T Consensus 16 ~~~~ls~-~kgk-~vlL~FwAsWCppCr~e-~P~L~~ly~~~~~~~~~~~~~~~~-vV~Vs~D~~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVAR-LENR-VLLLFFGAVVSPQCQLF-APKLKDFFVRLTDEFYVDRSAQLA-LVYVSMDQSEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHH-hCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHHHhhcccccCCCEE-EEEEECCCCHHHHHHHHHHCCCCc
Confidence 5789999 5998 78889999999999999 99999999988764 688 999999854 56889999999751
Q ss_pred ce-EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 137 VI-EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 137 ~f-pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
.+ |+..+.+.+++++||+. ..|++|||| +|+|+....
T Consensus 92 ~~~p~~~~~~~~l~~~y~v~-----------~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSVE-----------ELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred eeecccchHHHHHHHHcCCC-----------CCCEEEEECCCCcEEeeCh
Confidence 12 44444467899999984 258899999 999998753
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=164.71 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=108.0
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
.++.+++ +|+|++.|.+| +.++++ +|| +||++||++|||+|..+ +|.|++++++++..+++
T Consensus 31 ~~~~~~~----lP~f~l~D~dG---------~~v~ls---kGK-pVvV~FWATWCppCk~e-mP~L~eL~~e~k~~~v~- 91 (521)
T PRK14018 31 TATVPHT----LSTLKTADNRP---------ASVYLK---KDK-PTLIKFWASWCPLCLSE-LGETEKWAQDAKFSSAN- 91 (521)
T ss_pred cccccCC----CCCeEeecCCC---------ceeecc---CCC-EEEEEEEcCCCHHHHHH-HHHHHHHHHHhccCCeE-
Confidence 3666777 69999999986 778876 677 78889999999999999 99999999999878898
Q ss_pred EEEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 114 VICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 114 vi~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
||+|+.+ +....++|.+.++++ ++|++.|.++++++.||+. ..|++|||| +|+|++...+.
T Consensus 92 VI~Vs~~~~~~e~~~~~~~~~~~~~~y~-~~pV~~D~~~~lak~fgV~-----------giPTt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 92 LITVASPGFLHEKKDGDFQKWYAGLDYP-KLPVLTDNGGTLAQSLNIS-----------VYPSWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred EEEEecccccccccHHHHHHHHHhCCCc-ccceeccccHHHHHHcCCC-----------CcCeEEEEcCCCeEEEEEeCC
Confidence 9999863 234567788888775 5999999999999999985 358899999 99999999875
Q ss_pred CCCCcccCCHHHHHh
Q 028808 187 APSKMKVSGGDVILG 201 (203)
Q Consensus 187 ~~~~~~~~~a~~vL~ 201 (203)
- +.++..++|+
T Consensus 160 ~----~~eeL~a~Ie 170 (521)
T PRK14018 160 I----SEAQALALIR 170 (521)
T ss_pred C----CHHHHHHHHH
Confidence 3 2344444443
No 48
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.79 E-value=2e-18 Score=129.64 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=92.8
Q ss_pred CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC--HH
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND--PY 123 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~--~~ 123 (203)
|+|++++.+| +.++++++ +|| +++++||++|||+|..+ +|.+++++++ +. +++|+.|+ ++
T Consensus 1 p~f~l~~~~g---------~~~~~~~~-~~k-~~vl~F~~~~C~~C~~~-~~~l~~~~~~-----~~-~i~i~~~~~~~~ 62 (123)
T cd03011 1 PLFTATTLDG---------EQFDLESL-SGK-PVLVYFWATWCPVCRFT-SPTVNQLAAD-----YP-VVSVALRSGDDG 62 (123)
T ss_pred CCceeecCCC---------CEeeHHHh-CCC-EEEEEEECCcChhhhhh-ChHHHHHHhh-----CC-EEEEEccCCCHH
Confidence 7999999876 78999994 887 56777889999999999 9999988765 56 88998764 68
Q ss_pred HHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 124 VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 124 ~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
.+++|.++++++ ||++.|.+.++++.|++.. .|+.+||| +| |+++..+
T Consensus 63 ~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~-----------~P~~~vid~~g-i~~~~~g 111 (123)
T cd03011 63 AVARFMQKKGYG--FPVINDPDGVISARWGVSV-----------TPAIVIVDPGG-IVFVTTG 111 (123)
T ss_pred HHHHHHHHcCCC--ccEEECCCcHHHHhCCCCc-----------ccEEEEEcCCC-eEEEEec
Confidence 899999999996 9999999999999999853 47789999 78 9988865
No 49
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.79 E-value=1.3e-18 Score=126.45 Aligned_cols=112 Identities=26% Similarity=0.458 Sum_probs=97.8
Q ss_pred ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC--HHH
Q 028808 47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND--PYV 124 (203)
Q Consensus 47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~--~~~ 124 (203)
+|++.+.+| +.++++++ +|| .++++||++||+.|... ++.+.++.+++++.++. +++|+.|. ++.
T Consensus 1 ~~~~~~~~g---------~~~~~~~~-~~k-~~ll~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~-~~~v~~d~~~~~~ 67 (116)
T cd02966 1 DFSLPDLDG---------KPVSLSDL-KGK-VVLVNFWASWCPPCRAE-MPELEALAKEYKDDGVE-VVGVNVDDDDPAA 67 (116)
T ss_pred CccccCCCC---------CEeehHHc-CCC-EEEEEeecccChhHHHH-hHHHHHHHHHhCCCCeE-EEEEECCCCCHHH
Confidence 467777765 78999995 787 56778899999999999 99999999999877898 99999998 889
Q ss_pred HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
.++|.++++.+ ++++.|.+.++.+.||+.. .|+++|+| +|+|++...
T Consensus 68 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 68 VKAFLKKYGIT--FPVLLDPDGELAKAYGVRG-----------LPTTFLIDRDGRIRARHV 115 (116)
T ss_pred HHHHHHHcCCC--cceEEcCcchHHHhcCcCc-----------cceEEEECCCCcEEEEec
Confidence 99999999975 9999999999999999853 36789999 999998864
No 50
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=5e-18 Score=168.19 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=105.5
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCceeeec-ccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPI-KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL-~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
.....|++ +|+|+.++.. .+| +++++ ++ ++|| +||++||++||++|..| +|.|++++++|+++|+
T Consensus 389 ~~~~~g~~----~p~f~~~~~~--~~g-----~~~~l~~~-lkGK-~vll~FWAsWC~pC~~e-~P~L~~l~~~y~~~~~ 454 (1057)
T PLN02919 389 ESKKTATK----VPEFPPKLDW--LNT-----APLQFRRD-LKGK-VVILDFWTYCCINCMHV-LPDLEFLEKKYKDQPF 454 (1057)
T ss_pred hccccCCc----CCCCcccccc--cCC-----ccccchhh-cCCC-EEEEEEECCcChhHHhH-hHHHHHHHHHcCCCCe
Confidence 34667888 6999987632 122 78888 46 5988 78889999999999999 9999999999999999
Q ss_pred cEEEEEec---C---CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 112 DSVICVAV---N---DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 112 ~~vi~IS~---d---~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
. ||+|+. | +....++|.++++++ ||++.|.++++.++||+. ..|++|||| +|+|++++.
T Consensus 455 ~-vvgV~~~~~D~~~~~~~~~~~~~~~~i~--~pvv~D~~~~~~~~~~V~-----------~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 455 T-VVGVHSAKFDNEKDLEAIRNAVLRYNIS--HPVVNDGDMYLWRELGVS-----------SWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred E-EEEEecccccccccHHHHHHHHHHhCCC--ccEEECCchHHHHhcCCC-----------ccceEEEECCCCeEEEEEe
Confidence 8 999974 2 345678899999997 999999999999999984 358899999 999999987
Q ss_pred ecC
Q 028808 185 EEA 187 (203)
Q Consensus 185 ~~~ 187 (203)
++.
T Consensus 521 G~~ 523 (1057)
T PLN02919 521 GEG 523 (1057)
T ss_pred ccc
Confidence 643
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.74 E-value=3.4e-18 Score=130.33 Aligned_cols=104 Identities=13% Similarity=0.291 Sum_probs=81.8
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecCCH-HHHHHHHHHhCCCCceEEE
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpll 141 (203)
+.++|++ ++|| +||++||++|||+|..+ +|.+++++++++++ +++ |++||.|.. ...+++.++++.. .+|+.
T Consensus 9 ~~v~l~~-~~gk-~vll~Fwa~wC~~C~~~-~p~l~~~~~~~~~~~~~~~-vv~is~d~~~~~~~~~~~~~~~~-~~~~~ 83 (131)
T cd03009 9 GKVPVSS-LEGK-TVGLYFSASWCPPCRAF-TPKLVEFYEKLKESGKNFE-IVFISWDRDEESFNDYFSKMPWL-AVPFS 83 (131)
T ss_pred CCccHHH-hCCc-EEEEEEECCCChHHHHH-hHHHHHHHHHHHhcCCCEE-EEEEECCCCHHHHHHHHHcCCee-EcccC
Confidence 8999999 5998 67889999999999999 99999999999876 787 999999865 3455666655431 23322
Q ss_pred -eeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 142 -GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 142 -sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
+|.+..++++||+.. .|++|||| +|+|++...
T Consensus 84 ~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 84 DRERRSRLNRTFKIEG-----------IPTLIILDADGEVVTTDA 117 (131)
T ss_pred CHHHHHHHHHHcCCCC-----------CCEEEEECCCCCEEcccH
Confidence 355678999999853 47899999 999998754
No 52
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.74 E-value=9.1e-18 Score=128.57 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=83.7
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecCCH-HHHHHHHHHhCCCCceEEE
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpll 141 (203)
++++|++ ++|| +||++||++||++|..+ +|.++++++++++. +++ |++||.|.. ...++|.++++ + +..+
T Consensus 8 ~~v~l~~-~~Gk-~vll~F~atwC~~C~~~-~p~l~~l~~~~~~~~~~v~-vi~Vs~d~~~~~~~~~~~~~~-~--~~~~ 80 (132)
T cd02964 8 GVVPVSA-LEGK-TVGLYFSASWCPPCRAF-TPKLVEFYEKLKEEGKNFE-IVFVSRDRSEESFNEYFSEMP-P--WLAV 80 (132)
T ss_pred ccccHHH-hCCC-EEEEEEECCCCchHHHH-HHHHHHHHHHHhhcCCCeE-EEEEecCCCHHHHHHHHhcCC-C--eEee
Confidence 6899999 5997 78889999999999999 99999999999875 788 999999854 57889999997 3 2222
Q ss_pred --ee--CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 142 --GD--FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 142 --sD--~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
.| ....+++.||+.. .|+++||| +|+|++....
T Consensus 81 ~~~d~~~~~~~~~~~~v~~-----------iPt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 81 PFEDEELRELLEKQFKVEG-----------IPTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred ccCcHHHHHHHHHHcCCCC-----------CCEEEEECCCCCEEchhHH
Confidence 33 2356788898853 47899999 9999987654
No 53
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.71 E-value=1.3e-16 Score=129.65 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---- 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---- 120 (203)
+++|++.+.+| +.++|++ ++|| +||+.|||+||+.| .| ++.|++++++|+++|+. |+|+++|
T Consensus 5 ~~~f~~~~~~G---------~~v~Ls~-~~GK-vvLVvf~AS~C~~~-~q-~~~L~~L~~~y~~~gl~-Vlg~p~nqf~~ 70 (183)
T PRK10606 5 ILTTVVTTIDG---------EVTTLEK-YAGN-VLLIVNVASKCGLT-PQ-YEQLENIQKAWADQGFV-VLGFPCNQFLG 70 (183)
T ss_pred ccCcEeECCCC---------CEEeHHH-hCCC-EEEEEEEeCCCCCc-HH-HHHHHHHHHHHhhCCeE-EEEeecccccc
Confidence 59999999986 8999999 5998 67778899999988 58 99999999999999998 9999984
Q ss_pred ----CHHHHHHHHH-HhCCCCceEEEeeC
Q 028808 121 ----DPYVMNGWAE-KLQAKDVIEFYGDF 144 (203)
Q Consensus 121 ----~~~~~~~~~~-~~~l~~~fpllsD~ 144 (203)
+.+.+++|++ +++++ ||+++|.
T Consensus 71 qe~~~~~ei~~f~~~~~g~~--Fpv~~k~ 97 (183)
T PRK10606 71 QEPGSDEEIKTYCRTTWGVT--FPMFSKI 97 (183)
T ss_pred CCCCCHHHHHHHHHHccCCC--ceeEEEE
Confidence 5678899997 68886 9999544
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.70 E-value=9.2e-17 Score=129.87 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=80.1
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
.|+|++. +| +.++++++ + |++||++|||+|.+| +|.|+++++++ |+. |++||.|+..
T Consensus 55 ~~~f~l~--dG---------~~v~lsd~-~-----lV~FwaswCp~C~~e-~P~L~~l~~~~---g~~-Vi~Vs~D~~~- 111 (181)
T PRK13728 55 PRWFRLS--NG---------RQVNLADW-K-----VVLFMQGHCPYCHQF-DPVLKQLAQQY---GFS-VFPYTLDGQG- 111 (181)
T ss_pred CCccCCC--CC---------CEeehhHc-e-----EEEEECCCCHhHHHH-HHHHHHHHHHc---CCE-EEEEEeCCCC-
Confidence 5899985 44 89999995 4 556999999999999 99999998886 688 9999998542
Q ss_pred HHHHHHHhCCCCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE-EEeec
Q 028808 125 MNGWAEKLQAKDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA-LNVEE 186 (203)
Q Consensus 125 ~~~~~~~~~l~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~-~~~~~ 186 (203)
... ||++.| .++.+.+.||+.. ...|++|||| +|+|++ .++|.
T Consensus 112 --------~~~--fPv~~dd~~~~~~~~~g~~~---------~~iPttfLId~~G~i~~~~~~G~ 157 (181)
T PRK13728 112 --------DTA--FPEALPAPPDVMQTFFPNIP---------VATPTTFLVNVNTLEALPLLQGA 157 (181)
T ss_pred --------CCC--CceEecCchhHHHHHhCCCC---------CCCCeEEEEeCCCcEEEEEEECC
Confidence 244 999996 6777888898621 1358899999 999975 77764
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.55 E-value=3.9e-15 Score=107.07 Aligned_cols=91 Identities=18% Similarity=0.311 Sum_probs=69.9
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcEEEEEecCCH-HHHHHHHHHhCCCC-ceEEEeeCCchHHHH
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDSVICVAVNDP-YVMNGWAEKLQAKD-VIEFYGDFDGSFHKS 151 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~-~fpllsD~~~~v~~~ 151 (203)
|| ++++.||++||+.|..+ +|.|.+++++++ +.+++ +|+||.|.. ...+++.++++.+. .+++-.|...++.+.
T Consensus 1 gK-~~ll~fwa~~c~~c~~~-~~~l~~l~~~~~~~~~v~-~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GK-PVLLYFWASWCPPCKKE-LPKLKELYKKYKKKDDVE-FVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TS-EEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhCCCCCEE-EEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 56 67888999999999999 999999999998 66788 999999864 67888888886641 223333346778888
Q ss_pred cCCccccccccCCCCcceEEEEEe-CCEE
Q 028808 152 LDLGKDLSAALLGPRSERWSAYVE-DGRI 179 (203)
Q Consensus 152 yGv~~~~~~~g~~~~~~r~tfIId-dG~I 179 (203)
|++.. .|+.+||| +|+|
T Consensus 78 ~~i~~-----------iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGING-----------IPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TS-----------SSEEEEEETTSBE
T ss_pred CCCCc-----------CCEEEEECCCCCC
Confidence 98853 57899999 9987
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.49 E-value=7.5e-14 Score=110.33 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=69.2
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
++++++++ .|++||++|||+|.+| +|.++++++++ |+. |++|+.|+.. .+ .||...|.
T Consensus 45 ~~~~l~~~------~lvnFWAsWCppCr~e-~P~L~~l~~~~---~~~-Vi~Vs~d~~~----------~~-~fp~~~~~ 102 (153)
T TIGR02738 45 RHANQDDY------ALVFFYQSTCPYCHQF-APVLKRFSQQF---GLP-VYAFSLDGQG----------LT-GFPDPLPA 102 (153)
T ss_pred hhhhcCCC------EEEEEECCCChhHHHH-HHHHHHHHHHc---CCc-EEEEEeCCCc----------cc-ccccccCC
Confidence 66776663 2778999999999999 99999998876 588 9999998642 11 36766665
Q ss_pred CchHH-HHcCCccccccccCCCCcceEEEEEe-CCEE-EEEEeecCCCCcccCCHHHHHh
Q 028808 145 DGSFH-KSLDLGKDLSAALLGPRSERWSAYVE-DGRI-KALNVEEAPSKMKVSGGDVILG 201 (203)
Q Consensus 145 ~~~v~-~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I-~~~~~~~~~~~~~~~~a~~vL~ 201 (203)
+.... +.|+.. +.+..|++|||| +|++ +.++.+. .+.+..++.++
T Consensus 103 ~~~~~~~~~~~~--------~v~~iPTt~LID~~G~~i~~~~~G~----~s~~~l~~~I~ 150 (153)
T TIGR02738 103 TPEVMQTFFPNP--------RPVVTPATFLVNVNTRKAYPVLQGA----VDEAELANRMD 150 (153)
T ss_pred chHHHHHHhccC--------CCCCCCeEEEEeCCCCEEEEEeecc----cCHHHHHHHHH
Confidence 55544 334221 112468899999 8765 5567663 23344444444
No 57
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.19 E-value=1.5e-11 Score=105.64 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.3
Q ss_pred hHHHHhhcChhhHHhhhhhccccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEe
Q 028808 4 ASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGL 83 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f 83 (203)
-..++.+++-+++.|...-+.=|.-..... .+ ++.|....... .....+...++++ +|+ ++|++|
T Consensus 109 q~~~~~ka~~Fa~~~~~~~~~~P~Ldy~~~-----~P----~~~~a~~~~~~----~~~~~~~~~l~~l-~~k-~~Lv~F 173 (271)
T TIGR02740 109 QRIMLDKASRFADVSQRVIWTDPILDETLR-----RP----VSTLALDAHDT----TAKKQKDRVMKDL-AKK-SGLFFF 173 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccc-----CC----chHHHHHHHHH----HHHHHHHHHHHHh-cCC-eEEEEE
Confidence 346788888899888776654333222211 12 24444443321 0001145889994 887 678899
Q ss_pred eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccC
Q 028808 84 PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL 163 (203)
Q Consensus 84 ~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~ 163 (203)
|++|||+|..+ +|.|+++++++ |+. |++||.|.... + .||.+ +.+..+++.||+..
T Consensus 174 ~AswCp~C~~~-~P~L~~la~~y---g~~-Vi~VsvD~~~~----------~-~fp~~-~~d~~la~~~gV~~------- 229 (271)
T TIGR02740 174 FKSDCPYCHQQ-APILQAFEDRY---GIE-VLPVSVDGGPL----------P-GFPNA-RPDAGQAQQLKIRT------- 229 (271)
T ss_pred ECCCCccHHHH-hHHHHHHHHHc---CcE-EEEEeCCCCcc----------c-cCCcc-cCCHHHHHHcCCCc-------
Confidence 99999999999 89999998876 587 99999986421 1 25555 55677899999853
Q ss_pred CCCcceEEEEEe-C-CEEEEEEee
Q 028808 164 GPRSERWSAYVE-D-GRIKALNVE 185 (203)
Q Consensus 164 ~~~~~r~tfIId-d-G~I~~~~~~ 185 (203)
.|++||+| + |+|..+..|
T Consensus 230 ----vPtl~Lv~~~~~~v~~v~~G 249 (271)
T TIGR02740 230 ----VPAVFLADPDPNQFTPIGFG 249 (271)
T ss_pred ----CCeEEEEECCCCEEEEEEeC
Confidence 57899998 5 566656554
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.18 E-value=2.1e-11 Score=95.03 Aligned_cols=86 Identities=13% Similarity=0.261 Sum_probs=63.8
Q ss_pred eeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 66 TTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 66 ~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
...+.+.. +|| +||++||++||++|... +|.|.++++++.+. +. ++.|..|...
T Consensus 10 ~~~~~~a~~~gk-~vvV~F~A~WC~~C~~~-~p~l~~l~~~~~~~-~~-~v~v~vd~~~--------------------- 64 (142)
T cd02950 10 STPPEVALSNGK-PTLVEFYADWCTVCQEM-APDVAKLKQKYGDQ-VN-FVMLNVDNPK--------------------- 64 (142)
T ss_pred cCCHHHHHhCCC-EEEEEEECCcCHHHHHh-HHHHHHHHHHhccC-ee-EEEEEcCCcc---------------------
Confidence 34444432 465 67888999999999999 99999999998653 66 8888886521
Q ss_pred CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808 145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA 187 (203)
Q Consensus 145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~ 187 (203)
...++++|++. ..|+++++| +|+++....+..
T Consensus 65 ~~~~~~~~~V~-----------~iPt~v~~~~~G~~v~~~~G~~ 97 (142)
T cd02950 65 WLPEIDRYRVD-----------GIPHFVFLDREGNEEGQSIGLQ 97 (142)
T ss_pred cHHHHHHcCCC-----------CCCEEEEECCCCCEEEEEeCCC
Confidence 11356778774 357889998 999999988753
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.16 E-value=1.8e-10 Score=84.69 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=58.7
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD 153 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG 153 (203)
+|+ +||+.||++||++|... +|.|+++++++ .++. ++.|+.|..... ..++++|+
T Consensus 14 ~~k-~vvv~F~a~wC~~C~~~-~p~l~~la~~~--~~v~-~~~vd~d~~~~~--------------------~~l~~~~~ 68 (103)
T cd02985 14 KGR-LVVLEFALKHSGPSVKI-YPTMVKLSRTC--NDVV-FLLVNGDENDST--------------------MELCRREK 68 (103)
T ss_pred CCC-EEEEEEECCCCHhHHHH-hHHHHHHHHHC--CCCE-EEEEECCCChHH--------------------HHHHHHcC
Confidence 566 78889999999999999 89999999988 4577 888888763221 24566677
Q ss_pred CccccccccCCCCcceEEEEE-eCCEEEEEEeecCC
Q 028808 154 LGKDLSAALLGPRSERWSAYV-EDGRIKALNVEEAP 188 (203)
Q Consensus 154 v~~~~~~~g~~~~~~r~tfII-ddG~I~~~~~~~~~ 188 (203)
+.. .|+ |++ .||+++..+.+.++
T Consensus 69 V~~-----------~Pt-~~~~~~G~~v~~~~G~~~ 92 (103)
T cd02985 69 IIE-----------VPH-FLFYKDGEKIHEEEGIGP 92 (103)
T ss_pred CCc-----------CCE-EEEEeCCeEEEEEeCCCH
Confidence 643 354 555 49999999887654
No 60
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.13 E-value=8.2e-10 Score=88.83 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=88.0
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHc--CCcEEEEEecC-
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAK--GIDSVICVAVN- 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d- 120 (203)
.|+|+|.|.+| +.+++++ ++||++|| +|--+.|| .|... +..+.++.+++.+. .++ ++.||.|
T Consensus 32 ~~~f~L~d~~G---------~~~~~~~-~~Gk~~lv-~F~yT~CpdvCp~~-l~~l~~~~~~l~~~~~~v~-~v~ISvDP 98 (174)
T PF02630_consen 32 VPDFTLTDQDG---------KTVTLDD-LKGKWVLV-FFGYTRCPDVCPTT-LANLSQLQKQLGEEGKDVQ-FVFISVDP 98 (174)
T ss_dssp SST-EEEETTS---------SEEEGGG-GTTSEEEE-EEE-TTSSSHHHHH-HHHHHHHHHHHHHTTTTEE-EEEEESST
T ss_pred CCCcEEEcCCC---------CEecHHH-hCCCeEEE-EEEEcCCCccCHHH-HHHHHHHHHHhhhccCceE-EEEEEeCC
Confidence 59999999986 8999999 59996555 55556665 79988 89999999999864 566 9999986
Q ss_pred ---CHHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccc---cCC-CCc-ceEEEEEe-CCEEEEEEe
Q 028808 121 ---DPYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAA---LLG-PRS-ERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 121 ---~~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~---g~~-~~~-~r~tfIId-dG~I~~~~~ 184 (203)
+|+.+++|+++++.. +..+.-. -.+++++|++....... +.. ... -...|||| +|+|+..+-
T Consensus 99 ~~DTp~~L~~Y~~~~~~~--~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 99 ERDTPEVLKKYAKKFGPD--FIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp TTC-HHHHHHHHHCHTTT--CEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred CCCCHHHHHHHHHhcCCC--cceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 478899999999874 6555432 45678889987643211 000 000 12478999 999998863
No 61
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.01 E-value=2.1e-09 Score=78.74 Aligned_cols=74 Identities=5% Similarity=-0.016 Sum_probs=55.8
Q ss_pred cCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808 73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152 (203)
Q Consensus 73 ~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y 152 (203)
++|| +||+.||++||++|... +|.|++++++++ ++. ++.|..++ ....++++|
T Consensus 16 ~~g~-~vlV~F~a~WC~~C~~~-~p~l~~la~~~~--~~~-~~~vd~~~----------------------~~~~l~~~~ 68 (100)
T cd02999 16 NRED-YTAVLFYASWCPFSASF-RPHFNALSSMFP--QIR-HLAIEESS----------------------IKPSLLSRY 68 (100)
T ss_pred cCCC-EEEEEEECCCCHHHHhH-hHHHHHHHHHhc--cCc-eEEEECCC----------------------CCHHHHHhc
Confidence 4887 68889999999999999 999999999885 466 77774431 123677888
Q ss_pred CCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
++.. .|+.+++++| .+..+.|
T Consensus 69 ~V~~-----------~PT~~lf~~g-~~~~~~G 89 (100)
T cd02999 69 GVVG-----------FPTILLFNST-PRVRYNG 89 (100)
T ss_pred CCee-----------cCEEEEEcCC-ceeEecC
Confidence 8853 4778888877 5555544
No 62
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.00 E-value=2.7e-09 Score=79.48 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=64.1
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD 153 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG 153 (203)
+|+ ++|+.||++||++|... .|.+.+++++++..++. +..|+.|. +..++++||
T Consensus 23 ~~~-~vlV~F~a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~d~-----------------------~~~l~~~~~ 76 (111)
T cd02963 23 FKK-PYLIKITSDWCFSCIHI-EPVWKEVIQELEPLGVG-IATVNAGH-----------------------ERRLARKLG 76 (111)
T ss_pred CCC-eEEEEEECCccHhHHHh-hHHHHHHHHHHHhcCce-EEEEeccc-----------------------cHHHHHHcC
Confidence 455 78889999999999998 89999999999876676 77776542 245677787
Q ss_pred CccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808 154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
+. +.|+++++++|+++....+.. +.....+.|+.|
T Consensus 77 V~-----------~~Pt~~i~~~g~~~~~~~G~~----~~~~l~~~i~~~ 111 (111)
T cd02963 77 AH-----------SVPAIVGIINGQVTFYHDSSF----TKQHVVDFVRKL 111 (111)
T ss_pred Cc-----------cCCEEEEEECCEEEEEecCCC----CHHHHHHHHhcC
Confidence 74 347677778999877765532 234445555543
No 63
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.98 E-value=1.4e-09 Score=85.71 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=82.4
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCH-HHHHHHHHHhCCCC-ceEE
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDP-YVMNGWAEKLQAKD-VIEF 140 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~-~~~~~~~~~~~l~~-~fpl 140 (203)
..+-.++.++|| +|.+.|-+.|||+|+.= .|.+.+.|++.++.+ ++ ||-||.|.. +.+..+.+.++.+. -.|+
T Consensus 23 ~~~~~~~~l~gK-vV~lyFsA~wC~pCR~F-TP~Lk~fYe~l~~~~~~fE-VvfVS~D~~~~~~~~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 23 TEVLASEALQGK-VVGLYFSAHWCPPCRDF-TPILKDFYEELKDNAAPFE-VVFVSSDRDEESLDEYMLEHHGDWLAIPF 99 (157)
T ss_pred ccchHhHhhCCc-EEEEEEEEEECCchhhC-CchHHHHHHHHHhcCCceE-EEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence 456666557997 88888999999999987 899999999998753 66 999999865 66778888765431 3566
Q ss_pred EeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 141 YGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 141 lsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
-.|...++.+.|++.. .|+..++. ||+++-....
T Consensus 100 ~d~~~~~l~~ky~v~~-----------iP~l~i~~~dG~~v~~d~r 134 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKG-----------IPALVILKPDGTVVTEDAR 134 (157)
T ss_pred CCHHHHHHHHhcccCc-----------CceeEEecCCCCEehHhhH
Confidence 6666788888998853 46677888 9988766543
No 64
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.96 E-value=2.6e-09 Score=89.40 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccccCCCccccCCCceEEeccccccCCCCCCcee-eecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFAT-TPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~-vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
-...+|.+ |||.++.+.+| +. .++-|+.+|++.+|++|-+--||+-... +.+|+++.++|.+. +
T Consensus 71 ~~a~~G~~----APns~vv~l~g---------~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~-l~~f~~l~~~f~d~-a 135 (237)
T PF00837_consen 71 KEAKLGGP----APNSPVVTLDG---------QRSCRILDFAKGNRPLVLNFGSCTCPPFMAK-LDAFKRLVEDFSDV-A 135 (237)
T ss_pred cceeCCCC----CCCCceEeeCC---------CcceeHHHhccCCCCeEEEcccccchHHHHH-HHHHHHHHHHhhhh-h
Confidence 45778998 79999999986 45 8999977887788889998889999998 99999999999874 4
Q ss_pred cEEEEEec------C------C---------H----HHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCC
Q 028808 112 DSVICVAV------N------D---------P----YVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGP 165 (203)
Q Consensus 112 ~~vi~IS~------d------~---------~----~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~ 165 (203)
+ .+.|-. | + . ...+.+.++. . .+|++.|. ++...++||..-+
T Consensus 136 d-Fl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~--~~pi~vD~mdN~~~~~YgA~Pe-------- 203 (237)
T PF00837_consen 136 D-FLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-P--QCPIVVDTMDNNFNKAYGALPE-------- 203 (237)
T ss_pred h-eehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-C--CCCEEEEccCCHHHHHhCCCcc--------
Confidence 4 444321 1 1 0 1122333333 3 49999998 9999999999642
Q ss_pred CcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808 166 RSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 166 ~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
| .|||.||+|+|.-- +.|-++..++.++.|++
T Consensus 204 ---R-lyIi~~gkv~Y~Gg-~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 204 ---R-LYIIQDGKVVYKGG-PGPFGYSPEELREWLEK 235 (237)
T ss_pred ---e-EEEEECCEEEEeCC-CCCCcCCHHHHHHHHHh
Confidence 3 78999999999853 33334667788888775
No 65
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-08 Score=78.91 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=85.6
Q ss_pred CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-----
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----- 120 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----- 120 (203)
=||++.+.+| ++++|++ ++|| |||+.--|+-|..-. | -..|+.+|++|+++|+. |++.-+|
T Consensus 6 yd~~~~~~~G---------~~~~l~~-~~Gk-VlLIVNtASkCGfTp-Q-YegLe~Ly~ky~~~Gf~-VLgFPcNQF~~Q 71 (162)
T COG0386 6 YDFSVKDIDG---------EPVSLSD-YKGK-VLLIVNTASKCGFTP-Q-YEGLEALYKKYKDKGFE-VLGFPCNQFGGQ 71 (162)
T ss_pred ccceeeccCC---------CCccHHH-hCCc-EEEEEEcccccCCcH-h-HHHHHHHHHHHhhCCcE-EEeccccccccC
Confidence 5899999886 8999999 5998 777777899998765 6 69999999999999999 9999765
Q ss_pred ---CHHHHHHHHHHh-CCCCceEEEeeC--Cch----HHHHcCCcccccc-ccCCCCcce-EEEEEe-CCEEEEEEee
Q 028808 121 ---DPYVMNGWAEKL-QAKDVIEFYGDF--DGS----FHKSLDLGKDLSA-ALLGPRSER-WSAYVE-DGRIKALNVE 185 (203)
Q Consensus 121 ---~~~~~~~~~~~~-~l~~~fpllsD~--~~~----v~~~yGv~~~~~~-~g~~~~~~r-~tfIId-dG~I~~~~~~ 185 (203)
+.+..++|++.+ |++ ||+++-. +++ +-+.+--.. +. .+....-|- +-|+|| ||+|+.++-.
T Consensus 72 EPg~~eEI~~fC~~~YgVt--Fp~f~Ki~VnG~~a~PLy~~L~~~~--~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 72 EPGSDEEIAKFCQLNYGVT--FPMFSKIDVNGKNAHPLYKYLKEQK--PGKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred CCCCHHHHHHHHHhccCce--eeeeeEEeecCCCCCcHHHHHHhcC--CCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 345688888764 675 9998743 332 111111100 00 001111122 359999 9999999854
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.89 E-value=4.9e-09 Score=76.74 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL 154 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv 154 (203)
|+ +|++.||++||++|... +|.|+++++++++..+. ++.+..|. .+++++|++
T Consensus 17 ~~-~vvv~F~a~wC~~Ck~~-~p~l~~~~~~~~~~~~~-~~~vd~d~------------------------~~~~~~~~v 69 (102)
T cd02948 17 KG-LTVVDVYQEWCGPCKAV-VSLFKKIKNELGDDLLH-FATAEADT------------------------IDTLKRYRG 69 (102)
T ss_pred CC-eEEEEEECCcCHhHHHH-hHHHHHHHHHcCCCcEE-EEEEeCCC------------------------HHHHHHcCC
Confidence 44 67889999999999999 89999999888755455 66666652 234566776
Q ss_pred ccccccccCCCCcceEEEEE-eCCEEEEEEeecC
Q 028808 155 GKDLSAALLGPRSERWSAYV-EDGRIKALNVEEA 187 (203)
Q Consensus 155 ~~~~~~~g~~~~~~r~tfII-ddG~I~~~~~~~~ 187 (203)
.. .| ||++ .+|+++....+.+
T Consensus 70 ~~-----------~P-t~~~~~~g~~~~~~~G~~ 91 (102)
T cd02948 70 KC-----------EP-TFLFYKNGELVAVIRGAN 91 (102)
T ss_pred Cc-----------Cc-EEEEEECCEEEEEEecCC
Confidence 43 35 4555 5999999988753
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.85 E-value=2.6e-09 Score=80.63 Aligned_cols=88 Identities=9% Similarity=0.089 Sum_probs=60.4
Q ss_pred CC-CeEEEEEeeCCCCCCCCccchhhHH---HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHH
Q 028808 74 KG-KKVVIFGLPGAYTGVCSNQHVPSYK---NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFH 149 (203)
Q Consensus 74 ~g-k~vVL~~f~~~~cp~C~~ehl~~l~---~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~ 149 (203)
+| | +|+++||++||++|... .+.+. ++.+.+++ ++. ++.|+.+....+..| + --...+.+++
T Consensus 12 ~~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~i~~d~~~~~~~~------~----~~~~~~~~l~ 77 (125)
T cd02951 12 DGKK-PLLLLFSQPGCPYCDKL-KRDYLNDPAVQAYIRA-HFV-VVYINIDGDKEVTDF------D----GEALSEKELA 77 (125)
T ss_pred cCCC-cEEEEEeCCCCHHHHHH-HHHhcCcHHHHHHHHh-heE-EEEEEccCCceeecc------C----CCCccHHHHH
Confidence 45 5 67888999999999988 67764 34445543 576 888888754322221 1 1123567889
Q ss_pred HHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEeec
Q 028808 150 KSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNVEE 186 (203)
Q Consensus 150 ~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~~~ 186 (203)
++|++.. .|++++++ + |+++....+.
T Consensus 78 ~~~~v~~-----------~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 78 RKYRVRF-----------TPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred HHcCCcc-----------ccEEEEEcCCCCceeEEecCC
Confidence 9998853 57889999 8 8999888764
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.83 E-value=1.5e-08 Score=72.67 Aligned_cols=74 Identities=5% Similarity=-0.003 Sum_probs=55.3
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD 153 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG 153 (203)
+|+ ++|+.||++||++|... .|.++++++++.. .+. ++.|..+ ....++++|+
T Consensus 11 ~~~-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~l~~~~~ 63 (96)
T cd02956 11 TQV-PVVVDFWAPRSPPSKEL-LPLLERLAEEYQG-QFV-LAKVNCD-----------------------AQPQIAQQFG 63 (96)
T ss_pred CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhCC-cEE-EEEEecc-----------------------CCHHHHHHcC
Confidence 355 67889999999999999 8999999988864 244 5666543 3346777887
Q ss_pred CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
+. ..|+++++++|+++....+
T Consensus 64 i~-----------~~Pt~~~~~~g~~~~~~~g 84 (96)
T cd02956 64 VQ-----------ALPTVYLFAAGQPVDGFQG 84 (96)
T ss_pred CC-----------CCCEEEEEeCCEEeeeecC
Confidence 74 2477788889998877654
No 69
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.71 E-value=2.9e-07 Score=76.16 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=87.1
Q ss_pred ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHH---HcCCcEEEEEecC--
Q 028808 47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFK---AKGIDSVICVAVN-- 120 (203)
Q Consensus 47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~---~~gv~~vi~IS~d-- 120 (203)
+|+|.+.+| +.+++.++ +||++ |++|--+.|| +|..+ +..+.++.+++. ...++ ++.||+|
T Consensus 49 ~f~l~d~~G---------~~~~~~~l-~Gk~~-lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v~-vv~itvDPe 115 (207)
T COG1999 49 DFELTDQDG---------KPFTLKDL-KGKPS-LVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDVQ-VVFITVDPE 115 (207)
T ss_pred ceeeecCCC---------CEeecccc-CCCEE-EEEeecCCCCccChHH-HHHHHHHHHHhccccCCCEE-EEEEEECCC
Confidence 799999886 89999995 99954 5556667787 89999 999999999987 34555 8889986
Q ss_pred --CHHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccC---CCCcc-eEEEEEe-CCEEEEEEeec
Q 028808 121 --DPYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALL---GPRSE-RWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 121 --~~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~---~~~~~-r~tfIId-dG~I~~~~~~~ 186 (203)
+++.+++|.+ .+...++--+... ..+++++|++......... ..... -..|+|| +|++....-..
T Consensus 116 rDtp~~lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~ 190 (207)
T COG1999 116 RDTPEVLKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG 190 (207)
T ss_pred CCCHHHHHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC
Confidence 4678888988 3332135555543 5578999999852111000 00111 2357789 99999887543
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=98.70 E-value=6.3e-08 Score=71.14 Aligned_cols=73 Identities=11% Similarity=0.237 Sum_probs=55.3
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+.+++.||++|||+|... .|.|+++++++.. ++. ++.|..+. ...+++.|++.
T Consensus 22 ~~vvv~f~~~~C~~C~~~-~p~~~~l~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v~- 74 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMI-APILDEIADEYQG-KLT-VAKLNIDQ-----------------------NPGTAPKYGIR- 74 (109)
T ss_pred CeEEEEEECCCCHHHHHH-hHHHHHHHHHhCC-CcE-EEEEECCC-----------------------ChhHHHhCCCC-
Confidence 367889999999999999 8999999999875 366 77776543 23356677764
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
..|+.+++++|++++...+.
T Consensus 75 ----------~~Pt~~~~~~G~~~~~~~G~ 94 (109)
T PRK09381 75 ----------GIPTLLLFKNGEVAATKVGA 94 (109)
T ss_pred ----------cCCEEEEEeCCeEEEEecCC
Confidence 34666667799999887654
No 71
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.69 E-value=2.3e-07 Score=76.41 Aligned_cols=138 Identities=12% Similarity=0.235 Sum_probs=102.3
Q ss_pred cccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCe-EEEEEee-----CCCCCCCCccchh
Q 028808 24 RIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKK-VVIFGLP-----GAYTGVCSNQHVP 97 (203)
Q Consensus 24 ~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~-vVL~~f~-----~~~cp~C~~ehl~ 97 (203)
.++...+.+.++++.+ +..+...+| +++|.|||.|+. .|++.|- ..-||.|+.- +-
T Consensus 32 alaa~RR~LP~v~v~~-------~Y~F~g~~G----------~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~-~D 93 (211)
T PF05988_consen 32 ALAAERRRLPMVEVDK-------DYVFDGPDG----------PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFW-AD 93 (211)
T ss_pred HHHHHHhhCCCccCCC-------CeEEeCCCC----------cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhh-Hh
Confidence 4555566666655543 455544442 699999999985 4444442 6789999998 88
Q ss_pred hHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCC
Q 028808 98 SYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 177 (203)
Q Consensus 98 ~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG 177 (203)
.+.....-+.++++. +++||..+.+.+.+|+++.|.. ||.+|..+..+...|++..+.... + ..=++|+=|+|
T Consensus 94 ~~~g~l~hL~~rd~t-fa~vSraP~~~i~afk~rmGW~--~pw~Ss~gs~Fn~D~~~~~~~~~~-~---~g~svF~Rdg~ 166 (211)
T PF05988_consen 94 HIDGALRHLHARDTT-FAVVSRAPLEKIEAFKRRMGWT--FPWYSSYGSDFNYDFGVSFDEGGE-M---PGLSVFLRDGG 166 (211)
T ss_pred hhhhhHHHHHhCCce-EEEEeCCCHHHHHHHHHhcCCC--ceEEEcCCCcccccccceeccCCC-c---eeEEEEEEcCC
Confidence 887778888999999 9999999999999999999997 999999999999999986542211 1 11134555689
Q ss_pred EEEEEEeec
Q 028808 178 RIKALNVEE 186 (203)
Q Consensus 178 ~I~~~~~~~ 186 (203)
+|.+.+-..
T Consensus 167 ~VfhTyst~ 175 (211)
T PF05988_consen 167 RVFHTYSTY 175 (211)
T ss_pred EEEEEeecC
Confidence 998887654
No 72
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.66 E-value=7.2e-08 Score=69.80 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=51.5
Q ss_pred cccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808 71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK 150 (203)
Q Consensus 71 dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~ 150 (203)
+..+|+ +|+.||++||++|... .|.|++++++++..++. +..|.. |.+..+++
T Consensus 13 ~~~~~~--~lv~f~a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~-----------------------~~~~~~~~ 65 (101)
T cd02994 13 LVLEGE--WMIEFYAPWCPACQQL-QPEWEEFADWSDDLGIN-VAKVDV-----------------------TQEPGLSG 65 (101)
T ss_pred HHhCCC--EEEEEECCCCHHHHHH-hHHHHHHHHhhccCCeE-EEEEEc-----------------------cCCHhHHH
Confidence 334666 4688999999999999 89999998877655565 555543 23345677
Q ss_pred HcCCccccccccCCCCcceEEEEEeCCEEEEEEe
Q 028808 151 SLDLGKDLSAALLGPRSERWSAYVEDGRIKALNV 184 (203)
Q Consensus 151 ~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~ 184 (203)
+|++.. .|+.+++.+|++ ....
T Consensus 66 ~~~i~~-----------~Pt~~~~~~g~~-~~~~ 87 (101)
T cd02994 66 RFFVTA-----------LPTIYHAKDGVF-RRYQ 87 (101)
T ss_pred HcCCcc-----------cCEEEEeCCCCE-EEec
Confidence 787743 465666558885 4443
No 73
>PRK10996 thioredoxin 2; Provisional
Probab=98.65 E-value=6e-08 Score=75.15 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=58.8
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
++.|++.||++||++|... .+.|.++++++.+ ++. ++.|..+ .+..++++||+.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~-~~~l~~l~~~~~~-~v~-~~~vd~~-----------------------~~~~l~~~~~V~ 105 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNF-APIFEDVAAERSG-KVR-FVKVNTE-----------------------AERELSARFRIR 105 (139)
T ss_pred CCeEEEEEECCCCHHHHHH-HHHHHHHHHHhCC-CeE-EEEEeCC-----------------------CCHHHHHhcCCC
Confidence 3478889999999999998 8999998887754 355 6666443 234677888885
Q ss_pred cccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808 156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
. .|+.+++++|+++....+. .+.+..++.|++
T Consensus 106 ~-----------~Ptlii~~~G~~v~~~~G~----~~~e~l~~~l~~ 137 (139)
T PRK10996 106 S-----------IPTIMIFKNGQVVDMLNGA----VPKAPFDSWLNE 137 (139)
T ss_pred c-----------cCEEEEEECCEEEEEEcCC----CCHHHHHHHHHH
Confidence 3 3655555699998887653 223444555443
No 74
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.61 E-value=1.7e-07 Score=70.59 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=54.4
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
.+||+.||++||++|..- .|.|.++.+++.+. +. ++-|..|. ..++++.||+..
T Consensus 15 ~~vVV~F~A~WCgpCk~m-~P~le~la~~~~~~-v~-f~kVDvD~-----------------------~~~la~~~~V~~ 68 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQM-DEVLAKIAEDVSNF-AV-IYLVDIDE-----------------------VPDFNKMYELYD 68 (114)
T ss_pred CEEEEEEECCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEECCC-----------------------CHHHHHHcCCCC
Confidence 478889999999999976 68899988887643 34 55555543 456777888753
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.+++.||+++.+..+.
T Consensus 69 -----------iPTf~~fk~G~~v~~~~G~ 87 (114)
T cd02954 69 -----------PPTVMFFFRNKHMKIDLGT 87 (114)
T ss_pred -----------CCEEEEEECCEEEEEEcCC
Confidence 4656666799999999875
No 75
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.60 E-value=1.6e-07 Score=67.76 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y 152 (203)
+++ .+++.||++||++|... .|.++++.+++++.+ +. ++.+..+. |.+..++++|
T Consensus 16 ~~~-~~~v~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~---------------------~~~~~~~~~~ 71 (104)
T cd02997 16 KEK-HVLVMFYAPWCGHCKKM-KPEFTKAATELKEDGKGV-LAAVDCTK---------------------PEHDALKEEY 71 (104)
T ss_pred hCC-CEEEEEECCCCHHHHHh-CHHHHHHHHHHhhCCceE-EEEEECCC---------------------CccHHHHHhC
Confidence 344 67889999999999999 899999999887533 33 44444332 1245677788
Q ss_pred CCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
|+.. .|+.++..+|++++...+. ...+.+++.|
T Consensus 72 ~i~~-----------~Pt~~~~~~g~~~~~~~g~-------~~~~~l~~~l 104 (104)
T cd02997 72 NVKG-----------FPTFKYFENGKFVEKYEGE-------RTAEDIIEFM 104 (104)
T ss_pred CCcc-----------ccEEEEEeCCCeeEEeCCC-------CCHHHHHhhC
Confidence 7742 3544444488877655432 2455555543
No 76
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.58 E-value=2.3e-07 Score=66.99 Aligned_cols=74 Identities=11% Similarity=0.254 Sum_probs=54.3
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.++|++.|+++||+.|... .+.++++.+++.+ ++. ++.|..|. +.++++.||+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~-~~~l~~l~~~~~~-~v~-~~~id~d~-----------------------~~~l~~~~~v~ 66 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTL-KPILNKVIDEFDG-AVH-FVEIDIDE-----------------------DQEIAEAAGIM 66 (97)
T ss_pred CCeEEEEEECCCChhHHHH-HHHHHHHHHHhCC-ceE-EEEEECCC-----------------------CHHHHHHCCCe
Confidence 3478889999999999998 8999998888764 355 55555432 34567777774
Q ss_pred cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
. .|+.+|+++|+++....+.
T Consensus 67 ~-----------vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 67 G-----------TPTVQFFKDKELVKEISGV 86 (97)
T ss_pred e-----------ccEEEEEECCeEEEEEeCC
Confidence 2 4667777899998877653
No 77
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1e-07 Score=74.68 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=58.3
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..||+.|||.||.+|..= .|.++++..+++.+ ++ ++-|.+ |.+.+++..|++.
T Consensus 62 ~PVlVdF~A~WCgPCk~l-~P~l~~~~~~~~g~-~k-~~kvdt-----------------------D~~~ela~~Y~I~- 114 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKML-GPILEELVSEYAGK-FK-LYKVDT-----------------------DEHPELAEDYEIS- 114 (150)
T ss_pred CCEEEEEecCcCccHhHh-hHHHHHHHHhhcCe-EE-EEEEcc-----------------------ccccchHhhccee-
Confidence 468889999999999998 79999998888543 44 444433 5566788888885
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEEAP 188 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~ 188 (203)
+.|++++++||..+...++.-+
T Consensus 115 ----------avPtvlvfknGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 115 ----------AVPTVLVFKNGEKVDRFVGAVP 136 (150)
T ss_pred ----------eeeEEEEEECCEEeeeecccCC
Confidence 4577888899999988887644
No 78
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.57 E-value=6.5e-07 Score=66.77 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=67.0
Q ss_pred HHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcccccc------------------
Q 028808 99 YKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSA------------------ 160 (203)
Q Consensus 99 l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~------------------ 160 (203)
|.+..+++++.|++ +|+|+..++...++|++..+.+ +|+++|+++++-+++|+......
T Consensus 2 L~~~~~~l~~~gv~-lv~I~~g~~~~~~~f~~~~~~p--~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGVK-LVVIGCGSPEGIEKFCELTGFP--FPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSA 78 (115)
T ss_pred hhHhHHHHHHcCCe-EEEEEcCCHHHHHHHHhccCCC--CcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHH
Confidence 56778899999999 9999999997799999999997 99999999999999998752110
Q ss_pred --ccCC-------CCcceEEEEEe-CCEEEEEEee
Q 028808 161 --ALLG-------PRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 161 --~g~~-------~~~~r~tfIId-dG~I~~~~~~ 185 (203)
.++. ..-...+||+| +|+|+|.|..
T Consensus 79 ~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 79 KNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 0110 01124689999 8999999975
No 79
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.57 E-value=2.7e-07 Score=72.86 Aligned_cols=81 Identities=7% Similarity=0.052 Sum_probs=57.1
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
.++|+.||++|||+|... .|.|+++.+++.+.++. ++.|..|.. .+++++|++..
T Consensus 48 ~~vvV~Fya~wC~~Ck~l-~p~l~~la~~~~~~~v~-f~~VDvd~~-----------------------~~la~~~~V~~ 102 (152)
T cd02962 48 VTWLVEFFTTWSPECVNF-APVFAELSLKYNNNNLK-FGKIDIGRF-----------------------PNVAEKFRVST 102 (152)
T ss_pred CEEEEEEECCCCHHHHHH-HHHHHHHHHHcccCCeE-EEEEECCCC-----------------------HHHHHHcCcee
Confidence 478889999999999999 89999999998766677 888877552 23344444432
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA 187 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~ 187 (203)
. .+.+..|+.++..+|+.+.+..+.+
T Consensus 103 ~-----~~v~~~PT~ilf~~Gk~v~r~~G~~ 128 (152)
T cd02962 103 S-----PLSKQLPTIILFQGGKEVARRPYYN 128 (152)
T ss_pred c-----CCcCCCCEEEEEECCEEEEEEeccc
Confidence 1 0112356556667999999888743
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.56 E-value=2.1e-08 Score=73.74 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=61.9
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHH---HHHHcCCcEEEEEecCCHH-HHHHHHHHhCCCCceEEEeeCCchHH
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNID---KFKAKGIDSVICVAVNDPY-VMNGWAEKLQAKDVIEFYGDFDGSFH 149 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~---~f~~~gv~~vi~IS~d~~~-~~~~~~~~~~l~~~fpllsD~~~~v~ 149 (203)
+||+ +|+.|+..|||.|... .+.+.+..+ ++ +.++. ++.++.++.. ...+|.+..+.+ .+. ..+.+++
T Consensus 4 ~~k~-~v~~F~~~~C~~C~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~ 75 (112)
T PF13098_consen 4 NGKP-IVVVFTDPWCPYCKKL-EKELFPDNDVARYL-KDDFQ-VIFVNIDDSRDESEAVLDFDGQK--NVR--LSNKELA 75 (112)
T ss_dssp TSSE-EEEEEE-TT-HHHHHH-HHHHHHHHHHHCEE-HCECE-EEECESHSHHHHHHHHHSHTCHS--SCH--HHHHHHH
T ss_pred CCCE-EEEEEECCCCHHHHHH-HHHHHHHHHHHHHh-hcCeE-EEEEecCCcccccccccccccch--hhh--HHHHHHH
Confidence 4664 5566899999999976 466654322 22 22576 8888887764 344566554432 111 2345799
Q ss_pred HHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808 150 KSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 150 ~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
+.||+.. .|+.+++| ||+++++..| ..+++++++.|
T Consensus 76 ~~~~v~g-----------tPt~~~~d~~G~~v~~~~G-------~~~~~~l~~~L 112 (112)
T PF13098_consen 76 QRYGVNG-----------TPTIVFLDKDGKIVYRIPG-------YLSPEELLKML 112 (112)
T ss_dssp HHTT--S-----------SSEEEECTTTSCEEEEEES-------S--HHHHHHHH
T ss_pred HHcCCCc-----------cCEEEEEcCCCCEEEEecC-------CCCHHHHHhhC
Confidence 9999864 36778889 9999988754 24566666653
No 81
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.56 E-value=1.3e-07 Score=68.96 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=52.6
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK 150 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~ 150 (203)
.|| +||+.||++||++|... .+.+ .++.+++++ ++. ++.|..+... +...++++
T Consensus 10 ~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGK-PVFVDFTADWCVTCKVN-EKVVFSDPEVQAALKK-DVV-LLRADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCC-eEEEEEEcchhHHHHHH-HHHhcCCHHHHHHHhC-CeE-EEEEecCCCC-------------------HHHHHHHH
Confidence 455 67778999999999987 6666 456666765 676 7777654311 00135666
Q ss_pred HcCCccccccccCCCCcceEEEEEe--CCEEEEEEee
Q 028808 151 SLDLGKDLSAALLGPRSERWSAYVE--DGRIKALNVE 185 (203)
Q Consensus 151 ~yGv~~~~~~~g~~~~~~r~tfIId--dG~I~~~~~~ 185 (203)
+||+. +.|++++++ +|+++++..+
T Consensus 67 ~~~i~-----------~~Pti~~~~~~~g~~~~~~~G 92 (104)
T cd02953 67 RFGVF-----------GPPTYLFYGPGGEPEPLRLPG 92 (104)
T ss_pred HcCCC-----------CCCEEEEECCCCCCCCccccc
Confidence 67664 357788887 7998877654
No 82
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.56 E-value=3.6e-07 Score=65.75 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=52.0
Q ss_pred EEEEeeCCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+++.||++||++|... +|.|++++++++. ..+. ++.|..+ .+..+++.|++..
T Consensus 19 ~lv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~-~~~vd~~-----------------------~~~~~~~~~~v~~ 73 (102)
T cd03005 19 HFVKFFAPWCGHCKRL-APTWEQLAKKFNNENPSVK-IAKVDCT-----------------------QHRELCSEFQVRG 73 (102)
T ss_pred EEEEEECCCCHHHHHh-CHHHHHHHHHHhccCCcEE-EEEEECC-----------------------CChhhHhhcCCCc
Confidence 7788999999999999 8999999999976 2344 5555432 2346677787742
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.+++.+|+++..+.+.
T Consensus 74 -----------~Pt~~~~~~g~~~~~~~G~ 92 (102)
T cd03005 74 -----------YPTLLLFKDGEKVDKYKGT 92 (102)
T ss_pred -----------CCEEEEEeCCCeeeEeeCC
Confidence 4666667788877666653
No 83
>PTZ00051 thioredoxin; Provisional
Probab=98.56 E-value=1.7e-07 Score=67.25 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=52.9
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
++.++++||++||++|... .+.|.++++++. ++. ++.|..+ ....++++|++.
T Consensus 18 ~~~vli~f~~~~C~~C~~~-~~~l~~l~~~~~--~~~-~~~vd~~-----------------------~~~~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRI-APFYEECSKEYT--KMV-FVKVDVD-----------------------ELSEVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHH-hHHHHHHHHHcC--CcE-EEEEECc-----------------------chHHHHHHCCCc
Confidence 3478889999999999998 899998887654 355 6666443 234577778774
Q ss_pred cccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808 156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEA 187 (203)
Q Consensus 156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~ 187 (203)
. .|+.+++.+|+++....+..
T Consensus 71 ~-----------~Pt~~~~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 71 S-----------MPTFKVFKNGSVVDTLLGAN 91 (98)
T ss_pred e-----------eeEEEEEeCCeEEEEEeCCC
Confidence 3 35444445999999988754
No 84
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.53 E-value=4e-07 Score=66.20 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=57.2
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
++++.||++||++|... .|.++++.++++. ++. +..|..+ .+.++++.||+..
T Consensus 21 ~v~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~~~~~~~i~~- 73 (104)
T cd03004 21 PWLVDFYAPWCGPCQAL-LPELRKAARALKG-KVK-VGSVDCQ-----------------------KYESLCQQANIRA- 73 (104)
T ss_pred eEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-CcE-EEEEECC-----------------------chHHHHHHcCCCc-
Confidence 78889999999999998 8999999998853 355 6666544 2345667777742
Q ss_pred cccccCCCCcceEEEEEeCC-EEEEEEeecCCCCcccCCHHHHHhcC
Q 028808 158 LSAALLGPRSERWSAYVEDG-RIKALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG-~I~~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
.|+.+++++| +.++.+.+. .++++++.++|
T Consensus 74 ----------~Pt~~~~~~g~~~~~~~~G~------~~~~~~l~~~i 104 (104)
T cd03004 74 ----------YPTIRLYPGNASKYHSYNGW------HRDADSILEFI 104 (104)
T ss_pred ----------ccEEEEEcCCCCCceEccCC------CCCHHHHHhhC
Confidence 4666677754 777666542 12366666553
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.53 E-value=3.4e-07 Score=66.87 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL 154 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv 154 (203)
|+ .+|+.||++||++|... .|.|+++++++.. .+. ++.|+.+.. .+.++++.|++
T Consensus 18 ~~-~~lv~f~a~wC~~C~~~-~~~~~~~a~~~~~-~~~-~~~v~~~~~---------------------~~~~~~~~~~i 72 (109)
T cd03002 18 NY-TTLVEFYAPWCGHCKNL-KPEYAKAAKELDG-LVQ-VAAVDCDED---------------------KNKPLCGKYGV 72 (109)
T ss_pred CC-eEEEEEECCCCHHHHhh-ChHHHHHHHHhcC-Cce-EEEEecCcc---------------------ccHHHHHHcCC
Confidence 44 57888999999999998 8999999988864 366 888877642 23467777777
Q ss_pred ccccccccCCCCcceEEEEEeCC
Q 028808 155 GKDLSAALLGPRSERWSAYVEDG 177 (203)
Q Consensus 155 ~~~~~~~g~~~~~~r~tfIIddG 177 (203)
.. .|+.+++++|
T Consensus 73 ~~-----------~Pt~~~~~~~ 84 (109)
T cd03002 73 QG-----------FPTLKVFRPP 84 (109)
T ss_pred Cc-----------CCEEEEEeCC
Confidence 42 4667777744
No 86
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.5e-06 Score=68.98 Aligned_cols=124 Identities=18% Similarity=0.308 Sum_probs=83.4
Q ss_pred CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND---- 121 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~---- 121 (203)
=+|+..|.+| +.++|+. ++|| |||+.-=|+.|..-..+ -.+|+.++++|+++|+. |++.-+|.
T Consensus 15 ydf~~~d~~G---------~~v~l~~-yrGk-V~LiVNVAS~Cg~T~~~-Y~~l~~L~~ky~~~Gl~-ILaFPCNQFg~Q 81 (171)
T KOG1651|consen 15 YDFSAKDLDG---------EYVSLSQ-YRGK-VVLIVNVASQCGLTESQ-YTELNELYEKYKDQGLE-ILAFPCNQFGNQ 81 (171)
T ss_pred eeeEEecCCC---------CCccHHH-hCCe-EEEEEEcccccccchhc-chhHHHHHHHHhhCCeE-EEEeccccccCc
Confidence 5899999986 8999999 5998 67766779999998877 68999999999999998 99987652
Q ss_pred -H---HHHHHHH-HHhCCCCceEEEe--eCCchHHH-HcCCcccccccc-CCCCcce---EEEEEe-CCEEEEEEeec
Q 028808 122 -P---YVMNGWA-EKLQAKDVIEFYG--DFDGSFHK-SLDLGKDLSAAL-LGPRSER---WSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 122 -~---~~~~~~~-~~~~l~~~fplls--D~~~~v~~-~yGv~~~~~~~g-~~~~~~r---~tfIId-dG~I~~~~~~~ 186 (203)
| .....|+ .+.+.. ||++. |-++.-+. -|....... .| ++. .+. +-|+|| ||+|+.++-..
T Consensus 82 Ep~~n~Ei~~f~~~r~~~~--f~if~KidVNG~~~~PlykfLK~~~-~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~pt 155 (171)
T KOG1651|consen 82 EPGSNEEILNFVKVRYGAE--FPIFQKIDVNGDNADPLYKFLKKVK-GGPLGD-DIKWNFTKFLVDKDGHVVKRFSPT 155 (171)
T ss_pred CCCCcHHHHHHHHhccCCC--CccEeEEecCCCCCchHHHHHhhcC-CCcccc-cceeeeEEEeECCCCcEEEeeCCC
Confidence 2 3445565 455554 87775 33333111 111111100 01 111 122 249999 99999997543
No 87
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.49 E-value=4.7e-07 Score=66.87 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=37.4
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+|+ ++|+.|+++|||+|... .|.+.++++++++.++. +..|..|.
T Consensus 20 ~~k-~vlv~f~a~wC~~C~~~-~~~~~~la~~~~~~~~~-~~~vd~d~ 64 (109)
T cd02993 20 RNQ-STLVVLYAPWCPFCQAM-EASYEELAEKLAGSNVK-VAKFNADG 64 (109)
T ss_pred cCC-CEEEEEECCCCHHHHHH-hHHHHHHHHHhccCCeE-EEEEECCc
Confidence 455 67888999999999998 89999999999876776 77776654
No 88
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.48 E-value=7.1e-07 Score=63.79 Aligned_cols=73 Identities=5% Similarity=0.123 Sum_probs=51.7
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+.|++.||++||++|... .+.|.++.+++ ..++. ++.|.. +...++++.|++..
T Consensus 15 ~~v~v~f~~~~C~~C~~~-~~~l~~l~~~~-~~~i~-~~~vd~-----------------------~~~~~~~~~~~i~~ 68 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQM-NQVFEELAKEA-FPSVL-FLSIEA-----------------------EELPEISEKFEITA 68 (97)
T ss_pred CEEEEEEECCCCHHHHHH-hHHHHHHHHHh-CCceE-EEEEcc-----------------------ccCHHHHHhcCCcc
Confidence 478888999999999988 78898888776 33444 555432 12346777788753
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.+++++|+++....+.
T Consensus 69 -----------~Pt~~~~~~g~~~~~~~g~ 87 (97)
T cd02984 69 -----------VPTFVFFRNGTIVDRVSGA 87 (97)
T ss_pred -----------ccEEEEEECCEEEEEEeCC
Confidence 3655566799998888764
No 89
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.47 E-value=5.6e-07 Score=66.09 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=54.9
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+.+++.|+++||++|... .|.++++++++++..-+ ...+. -..+=.|.+..++++||+..
T Consensus 19 ~~vlv~F~a~wC~~C~~~-~p~~~~~a~~~~~~~~~------------------~~~~~-~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 19 ELVLVNFYADWCRFSQML-HPIFEEAAAKIKEEFPD------------------AGKVV-WGKVDCDKESDIADRYRINK 78 (108)
T ss_pred CEEEEEEECCCCHHHHhh-HHHHHHHHHHHhhccCC------------------CCcEE-EEEEECCCCHHHHHhCCCCc
Confidence 468889999999999998 89999998888642100 00011 01222355667888888853
Q ss_pred ccccccCCCCcceEEEEEeCCEEE-EEEeecCCCCcccCCHHHHHhcC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIK-ALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~-~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
.|+.++..+|++. ....+ ..+.+.+.++|
T Consensus 79 -----------~Ptl~~~~~g~~~~~~~~g-------~~~~~~l~~fi 108 (108)
T cd02996 79 -----------YPTLKLFRNGMMMKREYRG-------QRSVEALAEFV 108 (108)
T ss_pred -----------CCEEEEEeCCcCcceecCC-------CCCHHHHHhhC
Confidence 4656666788754 22222 23556666543
No 90
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.43 E-value=1.5e-06 Score=66.09 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=51.6
Q ss_pred CCCeEEEEEeeCCCCCC--CC--ccchhhHHHhHHHH-HHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchH
Q 028808 74 KGKKVVIFGLPGAYTGV--CS--NQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSF 148 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~--C~--~ehl~~l~~~~~~f-~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v 148 (203)
+.+.+||++||+.||++ |. .- .|.+.+.+.++ ++.++. ++-|.. |.+.++
T Consensus 25 ~~~~~vvv~f~a~wc~p~~Ck~~~~-~p~~~~~aa~~l~~~~v~-~~kVD~-----------------------d~~~~L 79 (120)
T cd03065 25 KYDVLCLLYHEPVESDKEAQKQFQM-EELVLELAAQVLEDKGIG-FGLVDS-----------------------KKDAKV 79 (120)
T ss_pred hCCceEEEEECCCcCChhhChhhcc-hhhHHHHHHHHhhcCCCE-EEEEeC-----------------------CCCHHH
Confidence 34558999999999988 98 44 46666666665 344566 666644 445678
Q ss_pred HHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 149 HKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 149 ~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
+++||+.. .|+.+++.||+++. ..|
T Consensus 80 a~~~~I~~-----------iPTl~lfk~G~~v~-~~G 104 (120)
T cd03065 80 AKKLGLDE-----------EDSIYVFKDDEVIE-YDG 104 (120)
T ss_pred HHHcCCcc-----------ccEEEEEECCEEEE-eeC
Confidence 88888853 46666667999876 554
No 91
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.43 E-value=3.4e-07 Score=66.86 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=29.9
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
.++|+.||++|||+|... +|.|++++++++..+.
T Consensus 16 ~~vlv~f~a~wC~~C~~~-~p~l~~l~~~~~~~~~ 49 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKL-EPVWNEVGAELKSSGS 49 (104)
T ss_pred CeEEEEEECCCCHHHHhh-ChHHHHHHHHHHhcCC
Confidence 378899999999999999 8999999999976653
No 92
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.42 E-value=1e-06 Score=65.81 Aligned_cols=80 Identities=16% Similarity=0.342 Sum_probs=63.9
Q ss_pred ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-----
Q 028808 47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----- 121 (203)
Q Consensus 47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----- 121 (203)
+|++.+.+| +.++|++ ++|| |+|+.--|+.|+.-. + ...|++++++|+++|+. |++.-++.
T Consensus 3 df~~~~~~G---------~~v~l~~-y~Gk-v~LIVNvAs~Cg~t~-q-y~~L~~L~~ky~~~gl~-ILaFPcnqFg~QE 68 (108)
T PF00255_consen 3 DFSAKDIDG---------KPVSLSK-YKGK-VLLIVNVASKCGYTK-Q-YKQLNELYEKYKDKGLE-ILAFPCNQFGNQE 68 (108)
T ss_dssp GSEEEBTTS---------SEEEGGG-GTTS-EEEEEEEESSSTTHH-H-HHHHHHHHHHHGGGTEE-EEEEEBSTTTTTT
T ss_pred ceeeeCCCC---------CEECHHH-cCCC-EEEEEecccccCCcc-c-cHHHHHHHHHHhcCCeE-EEeeehHHhcccc
Confidence 688899886 8999999 5998 555555689998776 7 89999999999999998 99987653
Q ss_pred ---HHHHHHHHHH-hCCCCceEEEe
Q 028808 122 ---PYVMNGWAEK-LQAKDVIEFYG 142 (203)
Q Consensus 122 ---~~~~~~~~~~-~~l~~~fplls 142 (203)
....+.|+.. .+.+ ||+..
T Consensus 69 p~~~~ei~~~~~~~~~~~--F~vf~ 91 (108)
T PF00255_consen 69 PGSNEEIKEFCKEKFGVT--FPVFE 91 (108)
T ss_dssp SSCHHHHHHHHCHCHT-S--SEEBS
T ss_pred CCCHHHHHHHHHhccCCc--ccceE
Confidence 3467788777 5664 88865
No 93
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.37 E-value=2e-06 Score=65.33 Aligned_cols=90 Identities=7% Similarity=0.106 Sum_probs=58.3
Q ss_pred eeeeccc---ccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH--------HHHHHHHHhC
Q 028808 65 ATTPIKD---IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY--------VMNGWAEKLQ 133 (203)
Q Consensus 65 ~~vsL~d---l~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~--------~~~~~~~~~~ 133 (203)
..++..+ .++.+..++++|.++|||+|+.- .|.|.++.++ .++. ++-|.+|... ...+|.++++
T Consensus 9 ~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~-~P~l~~~~~~---~~~~-~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 9 EVTTVVRALEALDKKETATFFIGRKTCPYCRKF-SGTLSGVVAQ---TKAP-IYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred eecCHHHHHHHHHcCCcEEEEEECCCChhHHHH-hHHHHHHHHh---cCCc-EEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 4455444 22333467788999999999998 7999988776 3467 8899887321 2333444443
Q ss_pred CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 134 AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 134 l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
+. +++ ...|+.+++.||+.+...++.
T Consensus 84 i~----------------~~i-----------~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 84 IP----------------TSF-----------MGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred Cc----------------ccC-----------CCCCEEEEEeCCeEEEEEeCC
Confidence 32 122 134766666799999998875
No 94
>PHA02278 thioredoxin-like protein
Probab=98.37 E-value=1.1e-06 Score=65.01 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=53.6
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..||+.||++||++|..- .|.|.++.+++.. .+. ++-|..|... + | ..+++++|++..
T Consensus 15 ~~vvV~F~A~WCgpCk~m-~p~l~~l~~~~~~-~~~-~~~vdvd~~~----------------~--d-~~~l~~~~~I~~ 72 (103)
T PHA02278 15 KDVIVMITQDNCGKCEIL-KSVIPMFQESGDI-KKP-ILTLNLDAED----------------V--D-REKAVKLFDIMS 72 (103)
T ss_pred CcEEEEEECCCCHHHHhH-HHHHHHHHhhhcC-Cce-EEEEECCccc----------------c--c-cHHHHHHCCCcc
Confidence 367889999999999998 7989888766432 245 6667665411 0 1 234777787753
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.++..||+++.+..|.
T Consensus 73 -----------iPT~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 73 -----------TPVLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred -----------ccEEEEEECCEEEEEEeCC
Confidence 4655555799999998874
No 95
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.32 E-value=6.1e-07 Score=65.03 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=34.9
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+++++.||++||++|... .|.|+++.++++.. +. +..|..|.
T Consensus 19 ~~~~v~f~a~wC~~C~~~-~p~~~~~a~~~~~~-~~-~~~vd~~~ 60 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDL-APTWREFAKEMDGV-IR-IGAVNCGD 60 (101)
T ss_pred CeEEEEEECCCChHHHHh-HHHHHHHHHHhcCc-eE-EEEEeCCc
Confidence 478889999999999998 89999999998753 65 77787754
No 96
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.31 E-value=4.5e-06 Score=57.55 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=50.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+.+++.|++.||+.|... .+.+++...+ ..++. ++.|+.+. +.++.+.||+..
T Consensus 11 ~~~ll~~~~~~C~~C~~~-~~~~~~~~~~--~~~~~-~~~i~~~~-----------------------~~~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAI-APVLEELAEE--YPKVK-FVKVDVDE-----------------------NPELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHh-hHHHHHHHHH--CCCce-EEEEECCC-----------------------ChhHHHhcCccc
Confidence 467888999999999988 7888887766 34566 77776554 344566676642
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.+++++|++++...+.
T Consensus 64 -----------~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 64 -----------IPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred -----------ccEEEEEECCEEEEEEecC
Confidence 3555666688888777653
No 97
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.27 E-value=1.5e-06 Score=61.34 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=54.9
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
.+++.||++||+.|... .+.+.+..+.++ ..++. ++.|+.+ .+.++++.||+..
T Consensus 17 ~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~v~~~-----------------------~~~~~~~~~~i~~ 71 (101)
T cd02961 17 DVLVEFYAPWCGHCKAL-APEYEKLAKELKGDGKVV-VAKVDCT-----------------------ANNDLCSEYGVRG 71 (101)
T ss_pred cEEEEEECCCCHHHHhh-hHHHHHHHHHhccCCceE-EEEeecc-----------------------chHHHHHhCCCCC
Confidence 78888999999999998 799999888875 33454 5555432 2456677777742
Q ss_pred ccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808 157 DLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQI 203 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~l 203 (203)
.|+.++++ +|+......+ ..+++++++.|
T Consensus 72 -----------~Pt~~~~~~~~~~~~~~~g-------~~~~~~i~~~~ 101 (101)
T cd02961 72 -----------YPTIKLFPNGSKEPVKYEG-------PRTLESLVEFI 101 (101)
T ss_pred -----------CCEEEEEcCCCcccccCCC-------CcCHHHHHhhC
Confidence 46778888 5543333322 23677776653
No 98
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.26 E-value=3.5e-06 Score=60.26 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y 152 (203)
+++ ++++.||++||+.|... .+.++++.++++..+ +. ++.+.. |.+..+++.|
T Consensus 12 ~~~-~~~i~f~~~~C~~c~~~-~~~~~~~~~~~~~~~~~~-~~~~d~-----------------------~~~~~~~~~~ 65 (102)
T TIGR01126 12 SNK-DVLVEFYAPWCGHCKNL-APEYEKLAKELKGDPDIV-LAKVDA-----------------------TAEKDLASRF 65 (102)
T ss_pred cCC-cEEEEEECCCCHHHHhh-ChHHHHHHHHhccCCceE-EEEEEc-----------------------cchHHHHHhC
Confidence 444 67888999999999998 799999888887543 33 333322 2345677778
Q ss_pred CCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 153 DLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 153 Gv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
|+.. .|+.++++ ++. ...+.+
T Consensus 66 ~i~~-----------~P~~~~~~~~~~-~~~~~g 87 (102)
T TIGR01126 66 GVSG-----------FPTIKFFPKGKK-PVDYEG 87 (102)
T ss_pred CCCc-----------CCEEEEecCCCc-ceeecC
Confidence 7743 46678888 554 444443
No 99
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.4e-06 Score=61.68 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=56.6
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD 153 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG 153 (203)
.+++.+++.|.++||++|..- -|.|.++..+|.+ +. ++-|.+|. .. ++++.|+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i-~P~~~~La~~y~~--v~-Flkvdvde---~~--------------------~~~~~~~ 71 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAI-APKFEKLAEKYPD--VV-FLKVDVDE---LE--------------------EVAKEFN 71 (106)
T ss_pred CCCCeEEEEEECCCCcchhhh-hhHHHHHHHHCCC--CE-EEEEeccc---CH--------------------hHHHhcC
Confidence 343478888999999999998 6999999999976 66 88888776 22 3555565
Q ss_pred CccccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808 154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP 188 (203)
Q Consensus 154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~ 188 (203)
+.. .|+..++.+|+.+-..++.++
T Consensus 72 V~~-----------~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 72 VKA-----------MPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred ceE-----------eeEEEEEECCEEEEEEecCCH
Confidence 542 344444469999988888764
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.24 E-value=4.6e-06 Score=59.28 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=51.6
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..+++.||++||+.|... .+.|+++.+++.. .+. ++.|..+. +.++.++||+..
T Consensus 15 ~~vvi~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v~~ 68 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMI-APILEELAKEYEG-KVK-FVKLNVDE-----------------------NPDIAAKYGIRS 68 (101)
T ss_pred CcEEEEEECCCCHHHHHh-CHHHHHHHHHhcC-CeE-EEEEECCC-----------------------CHHHHHHcCCCc
Confidence 367788999999999998 8999988888753 366 66665432 335667777742
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
.|+.+++++|++.+...+
T Consensus 69 -----------~P~~~~~~~g~~~~~~~g 86 (101)
T TIGR01068 69 -----------IPTLLLFKNGKEVDRSVG 86 (101)
T ss_pred -----------CCEEEEEeCCcEeeeecC
Confidence 466677788887766544
No 101
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.23 E-value=3.3e-06 Score=64.11 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCeEEEEEeeC-------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808 74 KGKKVVIFGLPG-------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG 146 (203)
Q Consensus 74 ~gk~vVL~~f~~-------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~ 146 (203)
+|+ .|++.|+| +|||+|+.. .|.++++.++++. ++. ++-|.+|+. +.+.|++.
T Consensus 20 ~~~-~vvV~F~A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~~-~v~-fv~Vdvd~~----------------~~w~d~~~ 79 (119)
T cd02952 20 EGK-PIFILFYGDKDPDGQSWCPDCVKA-EPVVREALKAAPE-DCV-FIYCDVGDR----------------PYWRDPNN 79 (119)
T ss_pred CCC-eEEEEEEccCCCCCCCCCHhHHhh-chhHHHHHHHCCC-CCE-EEEEEcCCc----------------ccccCcch
Confidence 466 56777999 999999998 8999999988863 476 888877652 23446667
Q ss_pred hHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808 147 SFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK 180 (203)
Q Consensus 147 ~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~ 180 (203)
.+++.|++. . ..|+.++++ .++++
T Consensus 80 ~~~~~~~I~-~---------~iPT~~~~~~~~~l~ 104 (119)
T cd02952 80 PFRTDPKLT-T---------GVPTLLRWKTPQRLV 104 (119)
T ss_pred hhHhccCcc-c---------CCCEEEEEcCCceec
Confidence 788888875 1 246566666 44444
No 102
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.17 E-value=1e-05 Score=60.64 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=52.9
Q ss_pred EEEEEeeCCC--CCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 78 VVIFGLPGAY--TGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 78 vVL~~f~~~~--cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+++++|+++| ||.|..- .|.|.++.+++.++ +. ++-|.. |.+.+++..|++.
T Consensus 29 ~~v~~f~~~~~~cp~c~~i-~P~leela~e~~~~-v~-f~kVdi-----------------------d~~~~la~~f~V~ 82 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDV-AVVLPELLKAFPGR-FR-AAVVGR-----------------------ADEQALAARFGVL 82 (111)
T ss_pred CEEEEecCCcccCcchhhh-HhHHHHHHHHCCCc-EE-EEEEEC-----------------------CCCHHHHHHcCCC
Confidence 4667899997 9999998 89999998888653 33 444433 3345778888885
Q ss_pred cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
. .|+.++..||+++....|.
T Consensus 83 s-----------IPTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 83 R-----------TPALLFFRDGRYVGVLAGI 102 (111)
T ss_pred c-----------CCEEEEEECCEEEEEEeCc
Confidence 3 4656666799999988764
No 103
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.16 E-value=1.4e-05 Score=59.32 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=50.1
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..|++.||++||++|..- .|.|+++.+++. ++. ++-|..+. . .++++|++..
T Consensus 25 ~~vvv~F~a~~c~~C~~l-~~~l~~la~~~~--~v~-f~~vd~~~-----------------------~-~l~~~~~i~~ 76 (113)
T cd02957 25 TRVVVHFYEPGFPRCKIL-DSHLEELAAKYP--ETK-FVKINAEK-----------------------A-FLVNYLDIKV 76 (113)
T ss_pred CEEEEEEeCCCCCcHHHH-HHHHHHHHHHCC--CcE-EEEEEchh-----------------------h-HHHHhcCCCc
Confidence 467789999999999987 788988888764 344 44443322 2 4556666642
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA 187 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~ 187 (203)
.|+.++..+|+++....+..
T Consensus 77 -----------~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 77 -----------LPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred -----------CCEEEEEECCEEEEEEecHH
Confidence 36555556999999988753
No 104
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.12 E-value=3e-06 Score=63.82 Aligned_cols=44 Identities=16% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+|| .||+.|+++||++|... .|.+.+..+..+ .+.. ++.|..|.
T Consensus 18 ~~k-pVlV~F~a~WC~~C~~~-~~~~~~~~~~~~-~~~~-fv~v~vd~ 61 (117)
T cd02959 18 SGK-PLMLLIHKTWCGACKAL-KPKFAESKEISE-LSHN-FVMVNLED 61 (117)
T ss_pred cCC-cEEEEEeCCcCHHHHHH-HHHHhhhHHHHh-hcCc-EEEEEecC
Confidence 566 67888999999999988 788887655443 3445 66666653
No 105
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.11 E-value=3.9e-06 Score=63.00 Aligned_cols=44 Identities=5% Similarity=0.074 Sum_probs=35.1
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+++.+|+.|+++||++|..- .|.|+++++++++. +. +..|..|.
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l-~p~~~~la~~~~~~-v~-~~~Vd~d~ 71 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAA-RQEFEQVAQKLSDQ-VL-FVAINCWW 71 (113)
T ss_pred CCCEEEEEEECCCCHHHHHH-HHHHHHHHHHhcCC-eE-EEEEECCC
Confidence 34578889999999999988 89999999998653 55 66676653
No 106
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.08 E-value=7.7e-06 Score=68.52 Aligned_cols=70 Identities=9% Similarity=0.155 Sum_probs=50.0
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.+++.||++||++|... .|.++++++++++. +. +..|.. |.+..++++|++..
T Consensus 54 ~vlV~FyApWC~~Ck~~-~P~~e~la~~~~~~-v~-~~~VD~-----------------------~~~~~l~~~~~I~~- 106 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKM-APAWERLAKALKGQ-VN-VADLDA-----------------------TRALNLAKRFAIKG- 106 (224)
T ss_pred CEEEEEECCCChHHHHH-HHHHHHHHHHcCCC-eE-EEEecC-----------------------cccHHHHHHcCCCc-
Confidence 57788999999999998 89999999888642 33 333322 22346778888753
Q ss_pred cccccCCCCcceEEEEEeCCEEEEEEe
Q 028808 158 LSAALLGPRSERWSAYVEDGRIKALNV 184 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG~I~~~~~ 184 (203)
.|+.+++++|+++....
T Consensus 107 ----------~PTl~~f~~G~~v~~~~ 123 (224)
T PTZ00443 107 ----------YPTLLLFDKGKMYQYEG 123 (224)
T ss_pred ----------CCEEEEEECCEEEEeeC
Confidence 47778888898776543
No 107
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.08 E-value=1.1e-05 Score=57.67 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=53.4
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
+.+|+.|++.||+.|... .|.|+++.+++.+ ++. ++-|..+. +..++++|++..
T Consensus 18 ~~vvv~f~~~~C~~C~~~-~~~~~~~~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~v~~ 71 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAF-KPILEKLAKEYKD-NVK-FAKVDCDE-----------------------NKELCKKYGVKS 71 (103)
T ss_dssp SEEEEEEESTTSHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETTT-----------------------SHHHHHHTTCSS
T ss_pred CCEEEEEeCCCCCccccc-cceeccccccccc-ccc-cchhhhhc-----------------------cchhhhccCCCC
Confidence 367778999999999998 8999999998876 565 66665532 245667777643
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|+.+++.+|+......+.
T Consensus 72 -----------~Pt~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 72 -----------VPTIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp -----------SSEEEEEETTEEEEEEESS
T ss_pred -----------CCEEEEEECCcEEEEEECC
Confidence 4666666799888866543
No 108
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.07 E-value=1.4e-05 Score=60.18 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=33.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
++|++.|+++|||+|..- -|-|.++.+++++. +. ++-|.+|.
T Consensus 15 klVVVdF~a~WC~pCk~m-dp~l~ela~~~~~~-~~-f~kVDVDe 56 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQL-DDILSKTSHDLSKM-AS-IYLVDVDK 56 (114)
T ss_pred CEEEEEEeCCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEeccc
Confidence 488889999999999876 59999999998643 55 77776665
No 109
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.8e-06 Score=71.40 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=56.9
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..|||.||+.||++|..= +|.|+++..+++.+ +. +.-|++ |.+..++..||+.
T Consensus 44 ~PVlV~fWap~~~~c~qL-~p~Lekla~~~~G~-f~-LakvN~-----------------------D~~p~vAaqfgiq- 96 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQL-TPTLEKLAAEYKGK-FK-LAKVNC-----------------------DAEPMVAAQFGVQ- 96 (304)
T ss_pred CCeEEEecCCCCchHHHH-HHHHHHHHHHhCCc-eE-EEEecC-----------------------CcchhHHHHhCcC-
Confidence 368889999999999987 89999999998754 33 333433 5556678888885
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEEAP 188 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~ 188 (203)
+.|++|++.||+=+--+.+..|
T Consensus 97 ----------sIPtV~af~dGqpVdgF~G~qP 118 (304)
T COG3118 97 ----------SIPTVYAFKDGQPVDGFQGAQP 118 (304)
T ss_pred ----------cCCeEEEeeCCcCccccCCCCc
Confidence 4677888889988888777654
No 110
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.99 E-value=1.3e-05 Score=59.84 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=27.9
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA 108 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~ 108 (203)
+.|++.||++||++|... .|.|+++.++|++
T Consensus 20 ~~vvV~f~a~wC~~C~~~-~~~~~~la~~~~~ 50 (114)
T cd02992 20 SAWLVEFYASWCGHCRAF-APTWKKLARDLRK 50 (114)
T ss_pred CeEEEEEECCCCHHHHHH-hHHHHHHHHHHHh
Confidence 478889999999999999 8999999998875
No 111
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.99 E-value=8.9e-06 Score=58.42 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=48.2
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
.+++.||++||+.|... .+.+.++.++++. .++. ++.+..+.. ...+++.|++..
T Consensus 20 ~~~v~f~a~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~~----------------------~~~~~~~~~i~~ 75 (105)
T cd02998 20 DVLVEFYAPWCGHCKNL-APEYEKLAAVFANEDDVV-IAKVDADEA----------------------NKDLAKKYGVSG 75 (105)
T ss_pred cEEEEEECCCCHHHHhh-ChHHHHHHHHhCCCCCEE-EEEEECCCc----------------------chhhHHhCCCCC
Confidence 67888999999999998 8999999998873 2344 555544331 345677777742
Q ss_pred ccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808 157 DLSAALLGPRSERWSAYVE-DGRIKALN 183 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIId-dG~I~~~~ 183 (203)
.|+.++++ +|+....+
T Consensus 76 -----------~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 76 -----------FPTLKFFPKGSTEPVKY 92 (105)
T ss_pred -----------cCEEEEEeCCCCCcccc
Confidence 46677777 54444443
No 112
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=2.1e-05 Score=63.73 Aligned_cols=132 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
+.+.+.+|++....|+.+.+.--|-.|+++ ..+|.++.+-++++|+. +|+|-+.+-.....|.++-... =.++.|+
T Consensus 40 ~~vp~~~L~~~~~avV~~vRrpgCvlCR~~-aadLa~l~~~ld~~Gv~-Li~vg~g~~~~~~~f~~q~~f~--gevylD~ 115 (197)
T KOG4498|consen 40 ESVPVTSLFKERSAVVAFVRRPGCVLCREE-AADLASLKDLLDELGVV-LIAVGPGSHVQFEDFWDQTYFS--GEVYLDP 115 (197)
T ss_pred ceeehHHhhhcCCeEEEEeccCcEEEeHHH-HHHHHHHHHHHHHhCCE-EEEEeccceeecchhhcccCcc--eeEEEcC
Confidence 889999998877789999999999999999 89999997778899998 9999775555556677776665 5888899
Q ss_pred CchHHHHcCCccccc-c--------------ccCC------CCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808 145 DGSFHKSLDLGKDLS-A--------------ALLG------PRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 145 ~~~v~~~yGv~~~~~-~--------------~g~~------~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
+.++-+.++...... . .|+. ....+.+++|. .|+|.+.|+...++ |....+.||+.
T Consensus 116 ~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~g--D~~~i~~Vl~v 193 (197)
T KOG4498|consen 116 HRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETG--DHVPIDSVLQV 193 (197)
T ss_pred ccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCC--CCcCHHHHHHH
Confidence 888765555433100 0 0111 01235578888 66999999988765 35566666653
No 113
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.97 E-value=1e-05 Score=63.18 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=50.5
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.++||+.|+++||++|..- .|.|.++.+++.+. +. |+-|.+|. ..++++.|++.
T Consensus 23 ~~lVVvdF~A~WCgpCk~m-~p~l~~la~~~~~~-~~-~~kVDVDe-----------------------~~dla~~y~I~ 76 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQM-DEVLASVAETIKNF-AV-IYLVDITE-----------------------VPDFNTMYELY 76 (142)
T ss_pred CCEEEEEEECCCChhHHHH-HHHHHHHHHHcCCc-eE-EEEEECCC-----------------------CHHHHHHcCcc
Confidence 3478899999999999987 79999988887643 33 56665543 34566666664
Q ss_pred cccccccCCCCcceEEE-EEeCCE-EEEEEeec
Q 028808 156 KDLSAALLGPRSERWSA-YVEDGR-IKALNVEE 186 (203)
Q Consensus 156 ~~~~~~g~~~~~~r~tf-IIddG~-I~~~~~~~ 186 (203)
. .+++| +..+|+ .+....+.
T Consensus 77 ~-----------~~t~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 77 D-----------PCTVMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred C-----------CCcEEEEEECCeEEEEEeccc
Confidence 2 13355 556887 66666554
No 114
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.96 E-value=9.2e-05 Score=55.28 Aligned_cols=73 Identities=11% Similarity=-0.051 Sum_probs=52.1
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..|++.|+++||++|..- -|.+.++.+++. ++. ++-|..+ ....++++|++..
T Consensus 23 ~~vvV~f~a~~c~~C~~~-~p~l~~la~~~~--~i~-f~~Vd~~-----------------------~~~~l~~~~~v~~ 75 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIM-DKHLEILAKKHL--ETK-FIKVNAE-----------------------KAPFLVEKLNIKV 75 (113)
T ss_pred CcEEEEEECCCCccHHHH-HHHHHHHHHHcC--CCE-EEEEEcc-----------------------cCHHHHHHCCCcc
Confidence 367788999999999987 688888877764 355 5555443 3345777787753
Q ss_pred ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808 157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA 187 (203)
Q Consensus 157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~ 187 (203)
.|+.++..+|+++....+..
T Consensus 76 -----------vPt~l~fk~G~~v~~~~g~~ 95 (113)
T cd02989 76 -----------LPTVILFKNGKTVDRIVGFE 95 (113)
T ss_pred -----------CCEEEEEECCEEEEEEECcc
Confidence 46566667999998887753
No 115
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.92 E-value=6.3e-05 Score=56.13 Aligned_cols=43 Identities=5% Similarity=-0.073 Sum_probs=28.9
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
+.+..++++|+++|||+|..- .|-++++.+++ + .++ ++-|..|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~-~~~l~~la~~~-~-~i~-~~~vd~d 62 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVT-KQLLEELSELS-D-KLK-LEIYDFD 62 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHH-HHHHHHHHHhc-C-ceE-EEEEeCC
Confidence 334457778999999999876 57777776654 2 255 5555444
No 116
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.91 E-value=5.1e-05 Score=61.14 Aligned_cols=85 Identities=8% Similarity=0.031 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.||+.||++||++|..- -|.|.+++.+|. ++. ++-|..+.. .++..|++.
T Consensus 85 ~VVV~Fya~wc~~Ck~m-~~~l~~LA~~~~--~vk-F~kVd~d~~------------------------~l~~~f~v~-- 134 (175)
T cd02987 85 TVVVHIYEPGIPGCAAL-NSSLLCLAAEYP--AVK-FCKIRASAT------------------------GASDEFDTD-- 134 (175)
T ss_pred EEEEEEECCCCchHHHH-HHHHHHHHHHCC--CeE-EEEEeccch------------------------hhHHhCCCC--
Confidence 67889999999999876 688888888874 355 666655421 244556553
Q ss_pred cccccCCCCcceEEEEEeCCEEEEEEeecCC---CCcccCCHHHHHh
Q 028808 158 LSAALLGPRSERWSAYVEDGRIKALNVEEAP---SKMKVSGGDVILG 201 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~---~~~~~~~a~~vL~ 201 (203)
+.|+.+|+.+|+++...++... ..++..+.+.+|.
T Consensus 135 ---------~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 135 ---------ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred ---------CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 2465555679999998887642 2355556666664
No 117
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.90 E-value=2.1e-05 Score=56.46 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=32.2
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
++.+++.||++||+.|... .|.|.++++++... +. +..+..+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~-~~~~~~~~~~~~~~-~~-~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNL-APEWKKAAKALKGI-VK-VGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHHHHHH-hHHHHHHHHHhcCC-ce-EEEEECc
Confidence 3457778999999999998 79999998888643 55 6666543
No 118
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.87 E-value=1.8e-05 Score=74.72 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK 150 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~ 150 (203)
+|| +|++.||++||++|... -+.. .+..++++ ++. ++-+..++.. +.+.++++
T Consensus 473 ~gK-~VlVdF~A~WC~~Ck~~-e~~~~~~~~v~~~l~--~~~-~v~vDvt~~~-------------------~~~~~l~~ 528 (571)
T PRK00293 473 KGK-PVMLDLYADWCVACKEF-EKYTFSDPQVQQALA--DTV-LLQADVTANN-------------------AEDVALLK 528 (571)
T ss_pred cCC-cEEEEEECCcCHhHHHH-HHHhcCCHHHHHHhc--CCE-EEEEECCCCC-------------------hhhHHHHH
Confidence 466 67889999999999864 3432 33444443 455 6666654321 12356777
Q ss_pred HcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808 151 SLDLGKDLSAALLGPRSERWSAYVE-DGRIK 180 (203)
Q Consensus 151 ~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~ 180 (203)
+||+.. .|+.+++| ||+++
T Consensus 529 ~~~v~g-----------~Pt~~~~~~~G~~i 548 (571)
T PRK00293 529 HYNVLG-----------LPTILFFDAQGQEI 548 (571)
T ss_pred HcCCCC-----------CCEEEEECCCCCCc
Confidence 787753 47788889 99985
No 119
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.87 E-value=8.7e-05 Score=61.79 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=66.7
Q ss_pred eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
.-.|.++ .+++.+++|| .+.||+|..+ .|-+..+.+++ |+. |+.||.|... ++ .||-... +
T Consensus 112 ~~~l~~l-a~~~gL~~F~-~~~C~~C~~~-~pil~~~~~~y---g~~-v~~vs~DG~~----------~~-~fp~~~~-~ 172 (215)
T PF13728_consen 112 DKALKQL-AQKYGLFFFY-RSDCPYCQQQ-APILQQFADKY---GFS-VIPVSLDGRP----------IP-SFPNPRP-D 172 (215)
T ss_pred HHHHHHH-hhCeEEEEEE-cCCCchhHHH-HHHHHHHHHHh---CCE-EEEEecCCCC----------Cc-CCCCCCC-C
Confidence 4456674 6666655544 5589999999 89999888776 798 9999998632 11 1222211 6
Q ss_pred chHHHHcCCccccccccCCCCcceEEEEEe-CC-EEEEEEeecCCCCcccCCHHHHHhc
Q 028808 146 GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DG-RIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG-~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
..+++.||+.. .|++|+|+ ++ ++.-+..| .-+.+++++.
T Consensus 173 ~g~~~~l~v~~-----------~Pal~Lv~~~~~~~~pv~~G-------~~s~~~L~~r 213 (215)
T PF13728_consen 173 PGQAKRLGVKV-----------TPALFLVNPNTKKWYPVSQG-------FMSLDELEDR 213 (215)
T ss_pred HHHHHHcCCCc-----------CCEEEEEECCCCeEEEEeee-------cCCHHHHHHh
Confidence 77888999853 48899998 65 55545443 3455665543
No 120
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.86 E-value=5.7e-05 Score=64.04 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=72.8
Q ss_pred ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHc-CCc-EEEEEecC---
Q 028808 47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAK-GID-SVICVAVN--- 120 (203)
Q Consensus 47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~-gv~-~vi~IS~d--- 120 (203)
.|+|.|.+| +.++-.| |+|||++| -|--++|| .|..| +..+.+..++++++ |+. +=+.||+|
T Consensus 121 pF~L~d~~G---------k~~te~d-f~Gkw~Li-YFGFThCPDICPdE-LeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 121 PFSLVDHDG---------KRVTEKD-FLGKWSLI-YFGFTHCPDICPDE-LEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred ceEEEecCC---------Ceecccc-cccceEEE-EecccCCCCcChHH-HHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 699999886 8999999 69997554 57889999 79999 99999999999765 443 02677876
Q ss_pred -CHHHHHHHHHHhCCC-CceEEEeeCCchHHHHcCCcccc
Q 028808 121 -DPYVMNGWAEKLQAK-DVIEFYGDFDGSFHKSLDLGKDL 158 (203)
Q Consensus 121 -~~~~~~~~~~~~~l~-~~fpllsD~~~~v~~~yGv~~~~ 158 (203)
+++.++++++++.-. ..+.=-.+.=..++++|.|+...
T Consensus 189 D~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~ 228 (280)
T KOG2792|consen 189 DSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFST 228 (280)
T ss_pred CCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeecc
Confidence 468899999988532 00111113345689999998753
No 121
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.84 E-value=3.5e-05 Score=69.41 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=32.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEec
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAV 119 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~ 119 (203)
++++++||++||+.|... .|.+.++++++++.+ +. ++.|.+
T Consensus 19 ~~~~v~f~a~wC~~c~~~-~~~~~~~a~~~~~~~~~v~-~~~vd~ 61 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSL-APEYEKAADELKKKGPPIK-LAKVDA 61 (462)
T ss_pred CCEEEEEECCCCHHHHhh-hHHHHHHHHHHhhcCCceE-EEEEEC
Confidence 467889999999999988 899999999988766 44 444543
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=97.83 E-value=4.3e-05 Score=69.65 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=31.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~ 119 (203)
+.+++.|++.||+.|... .|.+.++++++++.+.+ +.....
T Consensus 50 ~~~lv~f~a~wC~~Ck~~-~p~~~~~a~~~~~~~~~-i~~~~v 90 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRL-APEYKKAAKMLKEKKSE-IVLASV 90 (477)
T ss_pred CcEEEEEECCCCHHHHHh-hHHHHHHHHHHHhcCCc-EEEEEE
Confidence 368889999999999988 89999998888765544 443333
No 123
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=8.4e-05 Score=61.63 Aligned_cols=87 Identities=9% Similarity=0.276 Sum_probs=71.9
Q ss_pred eeecccccCCCeE-EEEEe-----eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceE
Q 028808 66 TTPIKDIFKGKKV-VIFGL-----PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIE 139 (203)
Q Consensus 66 ~vsL~dl~~gk~v-VL~~f-----~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fp 139 (203)
+.||+|||.|+.- +|+-| |..-||.|+.- +-++.....-++..++. +++||.-+.+.+.++.+..|.+ ||
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~l-aD~~dGa~~HL~~~dv~-lv~VsRAPl~~l~~~k~rmGW~--f~ 138 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFL-ADHWDGAVAHLEHHDVT-LVAVSRAPLEELVAYKRRMGWQ--FP 138 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhH-HhhhhhhhhhHhhcCce-EEEEecCcHHHHHHHHHhcCCc--ce
Confidence 6899999999853 33322 34578999876 66776667778888999 9999999999999999999997 99
Q ss_pred EEeeCCchHHHHcCCcc
Q 028808 140 FYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 140 llsD~~~~v~~~yGv~~ 156 (203)
.+|+.+..+-+.|.+..
T Consensus 139 w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 139 WVSSTDSDFNRDFQVSF 155 (247)
T ss_pred eEeccCccccccccccc
Confidence 99999999999997754
No 124
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.76 E-value=3.4e-05 Score=70.95 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+++ +||+.||++||++|... .|.|++++++|+..++. ++.|..|.
T Consensus 370 ~~k-~VLV~FyApWC~~Ck~m-~P~~eelA~~~~~~~v~-~~kVdvD~ 414 (463)
T TIGR00424 370 RKE-AWLVVLYAPWCPFCQAM-EASYLELAEKLAGSGVK-VAKFRADG 414 (463)
T ss_pred CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhccCCcE-EEEEECCC
Confidence 344 78889999999999998 89999999999877787 88887764
No 125
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.65 E-value=7.6e-05 Score=53.48 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=31.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEec
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAV 119 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~ 119 (203)
+.++++||++||++|... .|.+.++.+++++ ..+. +..|..
T Consensus 19 ~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~ 60 (104)
T cd02995 19 KDVLVEFYAPWCGHCKAL-APIYEELAEKLKGDDNVV-IAKMDA 60 (104)
T ss_pred CcEEEEEECCCCHHHHHH-hhHHHHHHHHhcCCCCEE-EEEEeC
Confidence 367789999999999998 8999999998876 2344 444544
No 126
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.65 E-value=0.00016 Score=50.82 Aligned_cols=43 Identities=21% Similarity=0.483 Sum_probs=35.5
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
+++ ++++.||+.|||.|... +|.+.+..+++.. .+. ++.+...
T Consensus 31 ~~~-~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~i~~~ 73 (127)
T COG0526 31 KGK-PVLVDFWAPWCPPCRAE-APLLEELAEEYGG-DVE-VVAVNVD 73 (127)
T ss_pred CCc-eEEEEEEcCcCHHHHhh-chhHHHHHHHhcC-CcE-EEEEECC
Confidence 455 66777889999999999 9999999988875 566 8888875
No 127
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.65 E-value=0.0002 Score=61.18 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
+.-.++++ .+++.+++||. +-||.|..+ .|-++...+++ |+. |++||.|.. +++ .||-.- +
T Consensus 141 ~~~~i~~l-a~~~gL~fFy~-~~C~~C~~~-apil~~fa~~y---gi~-v~~VS~DG~----------~~p-~fp~~~-~ 201 (256)
T TIGR02739 141 KEKAIQQL-SQSYGLFFFYR-GKSPISQKM-APVIQAFAKEY---GIS-VIPISVDGT----------LIP-GLPNSR-S 201 (256)
T ss_pred HHHHHHHH-HhceeEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCe-EEEEecCCC----------CCC-CCCCcc-C
Confidence 34456674 66666666555 669999998 89888887765 798 999999873 232 233322 2
Q ss_pred CchHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEe
Q 028808 145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNV 184 (203)
Q Consensus 145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~ 184 (203)
+...++.+|+.. .|++|+|+ + +++.-+..
T Consensus 202 d~gqa~~l~v~~-----------~Pal~Lv~~~t~~~~pv~~ 232 (256)
T TIGR02739 202 DSGQAQHLGVKY-----------FPALYLVNPKSQKMSPLAY 232 (256)
T ss_pred ChHHHHhcCCcc-----------CceEEEEECCCCcEEEEee
Confidence 566788888853 47899999 6 55544443
No 128
>PTZ00102 disulphide isomerase; Provisional
Probab=97.57 E-value=0.00019 Score=65.35 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
.|+ .||+.||++||+.|... .|.|+++++++++.+
T Consensus 374 ~~k-~vlv~f~a~wC~~C~~~-~p~~~~~a~~~~~~~ 408 (477)
T PTZ00102 374 SDK-DVLLEIYAPWCGHCKNL-EPVYNELGEKYKDND 408 (477)
T ss_pred CCC-CEEEEEECCCCHHHHHH-HHHHHHHHHHhccCC
Confidence 355 67888999999999998 899999988887643
No 129
>PLN02309 5'-adenylylsulfate reductase
Probab=97.55 E-value=0.00011 Score=67.47 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=37.6
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
+++ ++|+.|++.||++|... .|.|.++.++|+..++. +..|..|
T Consensus 364 ~~k-~vlV~FyApWC~~Cq~m-~p~~e~LA~~~~~~~V~-f~kVD~d 407 (457)
T PLN02309 364 RKE-PWLVVLYAPWCPFCQAM-EASYEELAEKLAGSGVK-VAKFRAD 407 (457)
T ss_pred CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhccCCeE-EEEEECC
Confidence 344 67889999999999998 89999999999877787 8888776
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.49 E-value=0.00023 Score=44.53 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=35.3
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHH
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~ 128 (203)
|+.|+.+||+.|... .+.+.++ ++...++. ++.++.+.......+
T Consensus 1 l~~~~~~~c~~c~~~-~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQAL-RPVLAEL--ALLNKGVK-FEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhh-hhHHHHH--HhhCCCcE-EEEEEcCCChHHhhH
Confidence 357899999999998 7888887 56667888 999998876544444
No 131
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.48 E-value=0.00086 Score=51.14 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=20.9
Q ss_pred ceEEEEEe-CCEEEEEEeecCCC-CcccCCHHHHHh
Q 028808 168 ERWSAYVE-DGRIKALNVEEAPS-KMKVSGGDVILG 201 (203)
Q Consensus 168 ~r~tfIId-dG~I~~~~~~~~~~-~~~~~~a~~vL~ 201 (203)
.|++++++ +|++++....-.+. ..+..+-..+|+
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLE 116 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHH
Confidence 57888899 99999887553221 133344444444
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.40 E-value=0.00037 Score=57.64 Aligned_cols=66 Identities=5% Similarity=0.017 Sum_probs=46.6
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.++++||++|||.|..- .+-+.++.++|.+ +. ++-|..| |++.
T Consensus 19 ~~vl~f~a~w~~~C~~m-~~vl~~l~~~~~~--~~-F~~V~~d-------------------------------~~V~-- 61 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQL-MDVCNALVEDFPS--LE-FYVVNLA-------------------------------DANN-- 61 (204)
T ss_pred cEEEEEeCCCCcchHHH-HHHHHHHHHHCCC--cE-EEEEccc-------------------------------cCcc--
Confidence 46778999999999864 7778888887743 55 6666433 5553
Q ss_pred cccccCCCCcceEEEEEeCCEEEEEEeecCCC
Q 028808 158 LSAALLGPRSERWSAYVEDGRIKALNVEEAPS 189 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~ 189 (203)
+.|+.+++.||+++.+..+.++.
T Consensus 62 ---------~vPtfv~~~~g~~i~r~~G~~~~ 84 (204)
T PTZ00062 62 ---------EYGVFEFYQNSQLINSLEGCNTS 84 (204)
T ss_pred ---------cceEEEEEECCEEEeeeeCCCHH
Confidence 34644445799999998887654
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.38 E-value=0.001 Score=54.99 Aligned_cols=77 Identities=6% Similarity=-0.022 Sum_probs=48.3
Q ss_pred CCCeEEEEEee--CCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808 74 KGKKVVIFGLP--GAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS 151 (203)
Q Consensus 74 ~gk~vVL~~f~--~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~ 151 (203)
++...+++|+- ++|||+|..- .|-+.++.+++. +++ +..+..|. |.+.++++.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~-~p~l~~la~~~~--~~~-i~~v~vd~---------------------~~~~~l~~~ 72 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKET-EQLLEELSEVSP--KLK-LEIYDFDT---------------------PEDKEEAEK 72 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHH-HHHHHHHHhhCC--Cce-EEEEecCC---------------------cccHHHHHH
Confidence 44434444443 3999999987 788888877763 344 55555543 235578888
Q ss_pred cCCccccccccCCCCcceEEEEEeCCEEEE-EEeec
Q 028808 152 LDLGKDLSAALLGPRSERWSAYVEDGRIKA-LNVEE 186 (203)
Q Consensus 152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~~-~~~~~ 186 (203)
||+.. .|+.+++++|+.+. .+.+.
T Consensus 73 ~~V~~-----------~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 73 YGVER-----------VPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred cCCCc-----------cCEEEEEeCCeeeEEEEeec
Confidence 88853 35455557887763 56553
No 134
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.33 E-value=0.0012 Score=54.02 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=57.0
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.||+.||++||++|..- -+.|.+++.+|. .+. ++-|..+.. +..|++.
T Consensus 104 ~VVV~Fya~wc~~C~~m-~~~l~~LA~k~~--~vk-FvkI~ad~~--------------------------~~~~~i~-- 151 (192)
T cd02988 104 WVVVHLYKDGIPLCRLL-NQHLSELARKFP--DTK-FVKIISTQC--------------------------IPNYPDK-- 151 (192)
T ss_pred EEEEEEECCCCchHHHH-HHHHHHHHHHCC--CCE-EEEEEhHHh--------------------------HhhCCCC--
Confidence 67788999999999987 688999998885 366 776765420 1234443
Q ss_pred cccccCCCCcceEEEEEeCCEEEEEEeecCC-C--CcccCCHHHHHhc
Q 028808 158 LSAALLGPRSERWSAYVEDGRIKALNVEEAP-S--KMKVSGGDVILGQ 202 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~-~--~~~~~~a~~vL~~ 202 (203)
..|+.++..||+++...++... | .++..+.+.+|.+
T Consensus 152 ---------~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 ---------NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred ---------CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 2465555579999999988632 1 3455566666643
No 135
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.33 E-value=0.00041 Score=47.70 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808 79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119 (203)
Q Consensus 79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~ 119 (203)
.+..|++.|||+|..- .+.+++++++++.. +. ++-|..
T Consensus 2 ~v~~f~~~~C~~C~~~-~~~l~~l~~~~~~~-~~-~~~vd~ 39 (82)
T TIGR00411 2 KIELFTSPTCPYCPAA-KRVVEEVAKEMGDA-VE-VEYINV 39 (82)
T ss_pred EEEEEECCCCcchHHH-HHHHHHHHHHhcCc-eE-EEEEeC
Confidence 4567899999999988 89999988887532 55 666654
No 136
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.23 E-value=0.0017 Score=55.22 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=60.9
Q ss_pred eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
.-.++++ .+++.+++||. +.||.|..+ .|-++...+++ |+. |++||.|.. +++ .||-. =++
T Consensus 135 ~~~i~~l-a~~~GL~fFy~-s~Cp~C~~~-aPil~~fa~~y---g~~-v~~VS~DG~----------~~p-~fp~~-~~d 195 (248)
T PRK13703 135 RQAIAKL-AEHYGLMFFYR-GQDPIDGQL-AQVINDFRDTY---GLS-VIPVSVDGV----------INP-LLPDS-RTD 195 (248)
T ss_pred HHHHHHH-HhcceEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCe-EEEEecCCC----------CCC-CCCCC-ccC
Confidence 3446674 55666666555 669999998 89888887765 788 999999874 122 23332 124
Q ss_pred chHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEee
Q 028808 146 GSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNVE 185 (203)
Q Consensus 146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~~ 185 (203)
...++.+|+.. .|++|||+ + +++.-+..|
T Consensus 196 ~gqa~~l~v~~-----------~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 196 QGQAQRLGVKY-----------FPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred hhHHHhcCCcc-----------cceEEEEECCCCcEEEEeec
Confidence 45557787743 47899998 5 576666554
No 137
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.20 E-value=0.0014 Score=55.93 Aligned_cols=134 Identities=11% Similarity=0.205 Sum_probs=84.0
Q ss_pred cccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHH-HhHH
Q 028808 26 PTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYK-NNID 104 (203)
Q Consensus 26 ~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~-~~~~ 104 (203)
-.++..+........+ |+|...++.| +.+++.+.++||..||..|...|---|... +. ...+
T Consensus 86 f~ap~~l~~~~kAlyF----P~l~g~tL~g---------~~~~~~~~l~gkvSlV~l~s~~~ge~~~~s----w~~p~~~ 148 (252)
T PF05176_consen 86 FIAPPSLFKADKALYF----PNLQGKTLAG---------NKVDTTDLLRGKVSLVCLFSSAWGEEMVDS----WTSPFLE 148 (252)
T ss_pred ccCCcccCcHHhCCcC----CCCccccCCC---------CCcccccccCCceEEEEEeehHHHHHHHHH----HhhHHHH
Confidence 3344444444445564 9999999876 688888988999766666655665544433 22 2444
Q ss_pred HHHHc---CCcEEEEEecCCHHHHHHHHHHh-------CCC----CceEEEeeC--CchHHHHcCCccccccccCCCCcc
Q 028808 105 KFKAK---GIDSVICVAVNDPYVMNGWAEKL-------QAK----DVIEFYGDF--DGSFHKSLDLGKDLSAALLGPRSE 168 (203)
Q Consensus 105 ~f~~~---gv~~vi~IS~d~~~~~~~~~~~~-------~l~----~~fpllsD~--~~~v~~~yGv~~~~~~~g~~~~~~ 168 (203)
+|... .++ +|=|+..+.. .++|.-+. .++ .+|-+..+. ...+-+++|+.....
T Consensus 149 ~~~~~~~~~~q-~v~In~~e~~-~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~--------- 217 (252)
T PF05176_consen 149 DFLQEPYGRVQ-IVEINLIENW-LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYV--------- 217 (252)
T ss_pred HHhhCCCCceE-EEEEecchHH-HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCc---------
Confidence 45433 576 9999886642 23332221 122 245555543 567888899976432
Q ss_pred eEEEEEe-CCEEEEEEeecC
Q 028808 169 RWSAYVE-DGRIKALNVEEA 187 (203)
Q Consensus 169 r~tfIId-dG~I~~~~~~~~ 187 (203)
-++|||| +|+|+|+--|..
T Consensus 218 GYvyLVD~~grIRWagsG~A 237 (252)
T PF05176_consen 218 GYVYLVDPNGRIRWAGSGPA 237 (252)
T ss_pred CeEEEECCCCeEEeCccCCC
Confidence 4699999 999999976643
No 138
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.20 E-value=0.0024 Score=53.58 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=76.9
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE--EEEEecCCH
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS--VICVAVNDP 122 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~--vi~IS~d~~ 122 (203)
+|..++-+.+ -..+ .+|+ |+|+.+--++|..|..| +..|+.+..+|+..|... +++|+..+.
T Consensus 10 ~p~W~i~~~~-------------pm~~-~~G~-VtvVALL~asc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 10 PPPWKIGGQD-------------PMLN-SLGH-VTVVALLQASCYFCLLQ-ASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCCceECCch-------------Hhhh-cCCc-EEeeeehhhhhHHHHHH-HHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 5777764432 3344 3787 77777777799999999 999999999999887632 566666554
Q ss_pred HHHHH-HHHHhCCCCceEEEe-e-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 123 YVMNG-WAEKLQAKDVIEFYG-D-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 123 ~~~~~-~~~~~~l~~~fplls-D-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
.+... +--+...+.+||++- | .+..+...++-..+. .||+| -|++.|.-.-+
T Consensus 74 ~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kdD------------~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 74 HSRLKYWELKRRVSEHIPVYQQDENQPDVWELLNGSKDD------------FLIYDRCGRLTYHIPLP 129 (238)
T ss_pred chhHHHHHHHHhCCCCCceecCCccccCHHHHhCCCcCc------------EEEEeccCcEEEEecCc
Confidence 33222 232333433699996 3 467788777665431 57779 89999986544
No 139
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.12 E-value=0.0049 Score=48.89 Aligned_cols=139 Identities=13% Similarity=0.181 Sum_probs=81.3
Q ss_pred ccCCCccccCCCceEEeccccc--cCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH-hHHHHHHc--
Q 028808 35 VAVGSDIVSAAQDVSLQKARTW--DEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN-NIDKFKAK-- 109 (203)
Q Consensus 35 ~~~G~~~~~~APdf~l~~~~g~--~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~-~~~~f~~~-- 109 (203)
+++|+++ |.+++.+- |. -+|.+-..+.++.+.+ .|| |-+++|-|--.. ..++++ +.+.+++.
T Consensus 1 ~~~~~~~----p~V~v~d~-Gel~l~~~~~~y~~W~s~~l-~GK-Vrviq~iAGr~s------ake~N~~l~~aik~a~f 67 (160)
T PF09695_consen 1 ITLGQPV----PPVTVADK-GELILNGDKISYQPWNSAQL-PGK-VRVIQHIAGRSS------AKEMNAPLIEAIKAAKF 67 (160)
T ss_pred CcCCCcC----CceEecCC-ceEEEcCCcccccccCcccc-CCC-EEEEEEeccCCc------hhHhhHHHHHHHHHcCC
Confidence 4678885 88888653 10 0111122467888884 898 666666644332 233332 44444443
Q ss_pred ---CCcEEEE-EecCCH-----HHHHHHHHHhC--CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CC
Q 028808 110 ---GIDSVIC-VAVNDP-----YVMNGWAEKLQ--AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DG 177 (203)
Q Consensus 110 ---gv~~vi~-IS~d~~-----~~~~~~~~~~~--l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG 177 (203)
.++ ..+ |+.|+. .-++.-+++.. .+ .=.++.|.++.+.+++++.... -+.+|+| +|
T Consensus 68 ~~d~yq-tttIiN~dDAi~gt~~fVrss~e~~kk~~p-~s~~vlD~~G~~~~aW~L~~~~----------SaiiVlDK~G 135 (160)
T PF09695_consen 68 PHDKYQ-TTTIINLDDAIWGTGGFVRSSAEDSKKEFP-WSQFVLDSNGVVRKAWQLQEES----------SAIIVLDKQG 135 (160)
T ss_pred Ccccee-EEEEEecccccccchHHHHHHHHHhhhhCC-CcEEEEcCCCceeccccCCCCC----------ceEEEEcCCc
Confidence 233 444 456552 12344444443 33 1247889999999999997532 1245669 99
Q ss_pred EEEEEEeecCCCCcccCCHHHHHhc
Q 028808 178 RIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 178 ~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
+|+|+.-+. ++-.+.++|++-
T Consensus 136 ~V~F~k~G~----Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 136 KVQFVKEGA----LSPAEVQQVIAL 156 (160)
T ss_pred cEEEEECCC----CCHHHHHHHHHH
Confidence 999998764 445666676653
No 140
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.74 E-value=0.0035 Score=43.30 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=25.4
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
+.|+++|||.|..- .|.++++.+++ |+. +-.+..|+
T Consensus 3 i~~~a~~C~~C~~~-~~~~~~~~~e~---~~~-~~~~~v~~ 38 (76)
T TIGR00412 3 IQIYGTGCANCQMT-EKNVKKAVEEL---GID-AEFEKVTD 38 (76)
T ss_pred EEEECCCCcCHHHH-HHHHHHHHHHc---CCC-eEEEEeCC
Confidence 45788999999987 68888777665 444 44555554
No 141
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.57 E-value=0.0066 Score=40.16 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=34.7
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD 143 (203)
+..|+++|||.|... .+.| ++.|+. +.-+..++ +...+++.+.++.. .+|.+.+
T Consensus 2 i~lf~~~~C~~C~~~-~~~l-------~~~~i~-~~~vdi~~~~~~~~~~~~~~~~~-~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA-KEYL-------TSKGIA-FEEIDVEKDSAAREEVLKVLGQR-GVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHH-HHHH-------HHCCCe-EEEEeccCCHHHHHHHHHHhCCC-cccEEEE
Confidence 356999999999865 3433 346787 77777764 33345566666654 4555554
No 142
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.49 E-value=0.006 Score=40.48 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=21.9
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~ 119 (203)
+..|+++|||+|..- .+.++++.++. .+++ +.-+..
T Consensus 3 v~~f~~~~C~~C~~~-~~~l~~l~~~~--~~i~-~~~id~ 38 (67)
T cd02973 3 IEVFVSPTCPYCPDA-VQAANRIAALN--PNIS-AEMIDA 38 (67)
T ss_pred EEEEECCCCCCcHHH-HHHHHHHHHhC--CceE-EEEEEc
Confidence 456899999999765 55555554332 2355 555543
No 143
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.39 E-value=0.0035 Score=44.87 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
|+ .++++|++.||+.|..- .+.|.+++++|+.+ +. ++-|..+
T Consensus 12 ~~-~~~~~f~~~~~~~~~~~-~~~~~~vA~~~~~~-v~-f~~vd~~ 53 (103)
T cd02982 12 GK-PLLVLFYNKDDSESEEL-RERFKEVAKKFKGK-LL-FVVVDAD 53 (103)
T ss_pred CC-CEEEEEEcCChhhHHHH-HHHHHHHHHHhCCe-EE-EEEEchH
Confidence 55 46667889999999887 79999999999853 54 5555443
No 144
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.28 E-value=0.01 Score=39.97 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=21.8
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~ 122 (203)
..|+++|||+|..- .+. +++.|+. .-.+..+..
T Consensus 3 ~ly~~~~C~~C~~~-~~~-------L~~~~~~-~~~idi~~~ 35 (77)
T TIGR02200 3 TVYGTTWCGYCAQL-MRT-------LDKLGAA-YEWVDIEED 35 (77)
T ss_pred EEEECCCChhHHHH-HHH-------HHHcCCc-eEEEeCcCC
Confidence 46899999999865 343 3455666 556666543
No 145
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.27 E-value=0.0043 Score=55.88 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=33.7
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVN 120 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d 120 (203)
+.+|+.||++||++|... .|.++++.++++.. ++. ++.+..+
T Consensus 365 ~~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~i~-~~~id~~ 408 (462)
T TIGR01130 365 KDVLVEFYAPWCGHCKNL-APIYEELAEKYKDAESDVV-IAKMDAT 408 (462)
T ss_pred CeEEEEEECCCCHhHHHH-HHHHHHHHHHhhcCCCcEE-EEEEECC
Confidence 367889999999999998 89999999999863 455 6656543
No 146
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.23 E-value=0.012 Score=40.93 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHH--hHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEee
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKN--NIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~--~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD 143 (203)
+|| .|++.|.++||+.|..- -..+-. ...++-.+++. .+-|..++.....++.. .++| .-++.|
T Consensus 16 ~~k-pvlv~f~a~wC~~C~~l-~~~~~~~~~v~~~~~~~fv-~v~vd~~~~~~~~~~~~-~~~P--~~~~ld 81 (82)
T PF13899_consen 16 EGK-PVLVDFGADWCPPCKKL-EREVFSDPEVQEALNKNFV-LVKVDVDDEDPNAQFDR-QGYP--TFFFLD 81 (82)
T ss_dssp HTS-EEEEEEETTTTHHHHHH-HHHTTTSHHHHHHHHHCSE-EEEEETTTHHHHHHHHH-CSSS--EEEEEE
T ss_pred cCC-CEEEEEECCCCHhHHHH-HHHHcCCHHHHHHHHCCEE-EEEEEcCCCChhHHhCC-ccCC--EEEEeC
Confidence 567 56667799999999753 222211 22232234565 66666666544333322 4555 444444
No 147
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0055 Score=56.74 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=56.5
Q ss_pred ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-Cc
Q 028808 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DG 146 (203)
Q Consensus 68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~ 146 (203)
++.+...+...+|+-|.|.||..|.+= .|+|.+.+..+++.|=. |--.=+|.... ...+.+++++ .||.+.=. +|
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~L-aPey~kAA~~Lke~~s~-i~LakVDat~~-~~~~~~y~v~-gyPTlkiFrnG 109 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKAL-APEYEKAATELKEEGSP-VKLAKVDATEE-SDLASKYEVR-GYPTLKIFRNG 109 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhh-CcHHHHHHHHhhccCCC-ceeEEeecchh-hhhHhhhcCC-CCCeEEEEecC
Confidence 344444555678899999999999986 99999999999988544 43444555443 7888888886 57665533 44
Q ss_pred hHHHHc
Q 028808 147 SFHKSL 152 (203)
Q Consensus 147 ~v~~~y 152 (203)
.....|
T Consensus 110 ~~~~~Y 115 (493)
T KOG0190|consen 110 RSAQDY 115 (493)
T ss_pred Ccceec
Confidence 444444
No 148
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.20 E-value=0.036 Score=40.90 Aligned_cols=19 Identities=11% Similarity=-0.125 Sum_probs=15.6
Q ss_pred CCCeEEEEEeeCCCCCCCCc
Q 028808 74 KGKKVVIFGLPGAYTGVCSN 93 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ 93 (203)
++| .|++++.++||+.|..
T Consensus 16 ~~K-~llv~~~~~~c~~c~~ 34 (114)
T cd02958 16 EKK-WLLVYLQSEDEFDSQV 34 (114)
T ss_pred hCc-eEEEEEecCCcchHHH
Confidence 456 6788899999999965
No 149
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.01 Score=50.41 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|.+.|++.|.++||.+|..- .|.|+.+..+|. |.. .+-|.+| ..+.-+..+|++
T Consensus 20 g~k~v~Vdfta~wCGPCk~I-aP~Fs~lankYp--~aV-FlkVdVd---~c~~taa~~gV~ 73 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRI-APIFSDLANKYP--GAV-FLKVDVD---ECRGTAATNGVN 73 (288)
T ss_pred CceEEEEEEEecccchHHhh-hhHHHHhhhhCc--ccE-EEEEeHH---HhhchhhhcCcc
Confidence 33478899999999999998 899999999994 444 5566443 355566666653
No 150
>PHA02125 thioredoxin-like protein
Probab=95.87 E-value=0.014 Score=40.02 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=15.2
Q ss_pred EEEeeCCCCCCCCccchhhHH
Q 028808 80 IFGLPGAYTGVCSNQHVPSYK 100 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~ 100 (203)
++.|+++||++|..- .|.|.
T Consensus 2 iv~f~a~wC~~Ck~~-~~~l~ 21 (75)
T PHA02125 2 IYLFGAEWCANCKMV-KPMLA 21 (75)
T ss_pred EEEEECCCCHhHHHH-HHHHH
Confidence 567999999999865 45543
No 151
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.86 E-value=0.0077 Score=46.39 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=15.3
Q ss_pred CCCeEEEEEeeCCCCCCCCc
Q 028808 74 KGKKVVIFGLPGAYTGVCSN 93 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ 93 (203)
+||+ |++.|.++||++|..
T Consensus 22 ~~Kp-vmv~f~sdwC~~Ck~ 40 (130)
T cd02960 22 SNKP-LMVIHHLEDCPHSQA 40 (130)
T ss_pred CCCe-EEEEEeCCcCHhHHH
Confidence 5674 666799999999975
No 152
>smart00594 UAS UAS domain.
Probab=95.74 E-value=0.082 Score=39.69 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=15.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcc
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQ 94 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~e 94 (203)
++| .+++.+.+.||+.|..-
T Consensus 26 ~~K-~~lv~~~~~~c~~c~~~ 45 (122)
T smart00594 26 QRR-LLWLYLHSQDSPDSQVF 45 (122)
T ss_pred hcC-CEEEEEeCCCCchHHHH
Confidence 455 67788999999999753
No 153
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.51 E-value=0.031 Score=46.12 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=15.5
Q ss_pred CeEEEEEeeCCCCCCCCcc
Q 028808 76 KKVVIFGLPGAYTGVCSNQ 94 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~e 94 (203)
+++++..|+++|||+|..-
T Consensus 133 ~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred CCcEEEEEECCCCCCcHHH
Confidence 4677777999999999753
No 154
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.18 E-value=0.062 Score=40.57 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=28.7
Q ss_pred ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
++.+..++.+.||+-|.++| |.|-+ | |++.++++++.+..
T Consensus 10 nF~~~v~~~~~vlV~F~A~~-Pwc~k-~-~~~~~LA~e~~~aa 49 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAY-PYGEK-H-EAFTRLAESSASAT 49 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCC-CCCCC-h-HHHHHHHHHHHhhc
Confidence 33443344457888999988 77774 4 99999999997643
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.92 E-value=0.052 Score=38.76 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=21.4
Q ss_pred ccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHH
Q 028808 70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNID 104 (203)
Q Consensus 70 ~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~ 104 (203)
.++ ++ ++-+..|.+.|||.|..- .+.++++.+
T Consensus 8 ~~l-~~-pv~i~~F~~~~C~~C~~~-~~~~~~l~~ 39 (89)
T cd03026 8 RRL-NG-PINFETYVSLSCHNCPDV-VQALNLMAV 39 (89)
T ss_pred Hhc-CC-CEEEEEEECCCCCCcHHH-HHHHHHHHH
Confidence 353 54 588888999999999753 344444443
No 156
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.068 Score=47.88 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=48.0
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS 147 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~ 147 (203)
...++.|++.||+.|.+- .|.+.++...++. . +...++|. ..++..++++++. .||-+.-....
T Consensus 48 ~~~~v~fyapwc~~c~~l-~~~~~~~~~~l~~---~-~~~~~vd~-~~~~~~~~~y~i~-gfPtl~~f~~~ 111 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKL-APTYKKLAKALKG---K-VKIGAVDC-DEHKDLCEKYGIQ-GFPTLKVFRPG 111 (383)
T ss_pred CceEEEEECCCCcchhhh-chHHHHHHHHhcC---c-eEEEEeCc-hhhHHHHHhcCCc-cCcEEEEEcCC
Confidence 356778999999999998 9999988888875 2 44444543 3578899999986 57777665444
No 157
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.71 E-value=0.13 Score=33.70 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=31.3
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
..|...|||.|..- ... ++++|+. +..+..+.. .....+.+.++.. .+|.+.+.+
T Consensus 3 ~l~~~~~c~~c~~~-~~~-------l~~~~i~-~~~~~i~~~~~~~~~~~~~~~~~-~vP~i~~~~ 58 (73)
T cd02976 3 TVYTKPDCPYCKAT-KRF-------LDERGIP-FEEVDVDEDPEALEELKKLNGYR-SVPVVVIGD 58 (73)
T ss_pred EEEeCCCChhHHHH-HHH-------HHHCCCC-eEEEeCCCCHHHHHHHHHHcCCc-ccCEEEECC
Confidence 45788999999754 222 3346777 777777643 3233343333332 466666543
No 158
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.63 E-value=0.018 Score=44.17 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.-++.+-++|||-|..+ +|.|.+..+.-. +++ +=-++.|+. .++..+|--
T Consensus 43 ~~ilvi~e~WCgD~~~~-vP~l~kiae~~p--~i~-~~~i~rd~~-----------------------~el~~~~lt--- 92 (129)
T PF14595_consen 43 YNILVITETWCGDCARN-VPVLAKIAEANP--NIE-VRIILRDEN-----------------------KELMDQYLT--- 92 (129)
T ss_dssp EEEEEE--TT-HHHHHH-HHHHHHHHHH-T--TEE-EEEE-HHHH-----------------------HHHTTTTTT---
T ss_pred cEEEEEECCCchhHHHH-HHHHHHHHHhCC--CCe-EEEEEecCC-----------------------hhHHHHHHh---
Confidence 33445789999999999 999999887643 344 444444332 222222211
Q ss_pred cccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808 158 LSAALLGPRSERWSAYVE-DGRIKALNVE 185 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIId-dG~I~~~~~~ 185 (203)
.+.++.|+.+++| +|+++.++..
T Consensus 93 -----~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 93 -----NGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ------SS--SSEEEEE-TT--EEEEEES
T ss_pred -----CCCeecCEEEEEcCCCCEeEEEcC
Confidence 0224678777778 8999988854
No 159
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.19 E-value=0.1 Score=36.04 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=32.4
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEee
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD 143 (203)
.|..+|||.|..- . ..++++|+. ...+..+.......+.+..+.. .+|.+..
T Consensus 12 ly~~~~Cp~C~~a--k------~~L~~~gi~-y~~idi~~~~~~~~~~~~~g~~-~vP~i~i 63 (79)
T TIGR02190 12 VFTKPGCPFCAKA--K------ATLKEKGYD-FEEIPLGNDARGRSLRAVTGAT-TVPQVFI 63 (79)
T ss_pred EEECCCCHhHHHH--H------HHHHHcCCC-cEEEECCCChHHHHHHHHHCCC-CcCeEEE
Confidence 4889999999754 2 223456888 7777776543344555555543 4666654
No 160
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.13 E-value=0.083 Score=36.09 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=30.5
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHH-HHHHHhCCCCceEEEe
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMN-GWAEKLQAKDVIEFYG 142 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~-~~~~~~~l~~~fplls 142 (203)
+.|.++|||.|..- .+.|.++. +. ..+. ++-|+.++ ....+ .+.+..+.. .+|.+.
T Consensus 2 ~~f~~~~Cp~C~~~-~~~L~~~~--i~-~~~~-~~~v~~~~~~~~~~~~l~~~~g~~-~vP~v~ 59 (84)
T TIGR02180 2 VVFSKSYCPYCKKA-KEILAKLN--VK-PAYE-VVELDQLSNGSEIQDYLEEITGQR-TVPNIF 59 (84)
T ss_pred EEEECCCChhHHHH-HHHHHHcC--CC-CCCE-EEEeeCCCChHHHHHHHHHHhCCC-CCCeEE
Confidence 45889999999876 55555543 11 1155 66666543 22233 344444543 355544
No 161
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.81 E-value=0.15 Score=44.78 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=46.5
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHH-Hc
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHK-SL 152 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~-~y 152 (203)
-+|+++|.++||++-+.= .|-|.+.+++|+++- -..|+|. +|- ......++++.++ +||-+-=. +|.+++ .|
T Consensus 14 elvfv~FyAdWCrFSq~L-~piF~EAa~~~~~e~P~~kvvwg~-VDc-d~e~~ia~ky~I~-KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQML-KPIFEEAAAKFKQEFPEGKVVWGK-VDC-DKEDDIADKYHIN-KYPTLKVFRNGEMMKREY 89 (375)
T ss_pred eEEeeeeehhhchHHHHH-hHHHHHHHHHHHHhCCCcceEEEE-ccc-chhhHHhhhhccc-cCceeeeeeccchhhhhh
Confidence 489999999999999988 799999999998652 1214443 332 1234456666664 46554332 555544 45
No 162
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.43 E-value=0.41 Score=33.42 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=33.4
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
..|-.+|||.|..- ...++++|+. +--+..+......+..+..+.. .+|++...+
T Consensus 4 ~lYt~~~Cp~C~~a--------k~~L~~~gI~-~~~idi~~~~~~~~~~~~~g~~-~vPvv~i~~ 58 (81)
T PRK10329 4 TIYTRNDCVQCHAT--------KRAMESRGFD-FEMINVDRVPEAAETLRAQGFR-QLPVVIAGD 58 (81)
T ss_pred EEEeCCCCHhHHHH--------HHHHHHCCCc-eEEEECCCCHHHHHHHHHcCCC-CcCEEEECC
Confidence 35788999999643 1234568888 7777776433333333444543 467766544
No 163
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.38 E-value=0.32 Score=32.73 Aligned_cols=54 Identities=6% Similarity=-0.001 Sum_probs=32.8
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
..|-..+||.|..- .. .++++|+. .--+..+......+..++.|.. .+|++...
T Consensus 2 ~ly~~~~Cp~C~~a-k~-------~L~~~~i~-~~~~di~~~~~~~~~~~~~g~~-~vP~v~~~ 55 (72)
T TIGR02194 2 TVYSKNNCVQCKMT-KK-------ALEEHGIA-FEEINIDEQPEAIDYVKAQGFR-QVPVIVAD 55 (72)
T ss_pred EEEeCCCCHHHHHH-HH-------HHHHCCCc-eEEEECCCCHHHHHHHHHcCCc-ccCEEEEC
Confidence 35888999999754 22 23467887 7667666433344444455653 46766653
No 164
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=92.29 E-value=0.36 Score=31.24 Aligned_cols=55 Identities=7% Similarity=-0.038 Sum_probs=33.0
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHH-HHHHHHhCCCCceEEEeeCC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVM-NGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~-~~~~~~~~l~~~fpllsD~~ 145 (203)
..|-..|||.|..- .. -++++|+. +.-+..+..... ..+.+..+.. .+|.+...+
T Consensus 3 ~ly~~~~Cp~C~~~-~~-------~L~~~~i~-~~~~di~~~~~~~~~l~~~~~~~-~~P~~~~~~ 58 (72)
T cd02066 3 VVFSKSTCPYCKRA-KR-------LLESLGIE-FEEIDILEDGELREELKELSGWP-TVPQIFING 58 (72)
T ss_pred EEEECCCCHHHHHH-HH-------HHHHcCCc-EEEEECCCCHHHHHHHHHHhCCC-CcCEEEECC
Confidence 35788999999754 22 23455677 777776654333 3444445553 477776543
No 165
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.23 E-value=0.35 Score=40.57 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=22.6
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV 117 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I 117 (203)
.+|+.|--..||+|.+-| +++.+ +.+.|++ |.-+
T Consensus 109 ~~I~vFtDp~CpyCkkl~-~~l~~----~~~~~v~-v~~~ 142 (232)
T PRK10877 109 HVITVFTDITCGYCHKLH-EQMKD----YNALGIT-VRYL 142 (232)
T ss_pred EEEEEEECCCChHHHHHH-HHHHH----HhcCCeE-EEEE
Confidence 456678889999998763 55443 3446776 5443
No 166
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.82 E-value=0.46 Score=34.31 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=31.9
Q ss_pred cCCCeEEEEEeeC----CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808 73 FKGKKVVIFGLPG----AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 73 ~~gk~vVL~~f~~----~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD 143 (203)
...++|||+ --+ +|||+|..- .+-|+++|++ ...+..++ +....+..+..|.+ .+|.+..
T Consensus 9 i~~~~Vvvf-~kg~~~~~~Cp~C~~a--------k~lL~~~~i~-~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi 73 (97)
T TIGR00365 9 IKENPVVLY-MKGTPQFPQCGFSARA--------VQILKACGVP-FAYVNVLEDPEIRQGIKEYSNWP-TIPQLYV 73 (97)
T ss_pred hccCCEEEE-EccCCCCCCCchHHHH--------HHHHHHcCCC-EEEEECCCCHHHHHHHHHHhCCC-CCCEEEE
Confidence 344556554 333 799999643 2334566787 77777643 33333333333433 3665543
No 167
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.66 E-value=0.21 Score=32.33 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=32.0
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEe
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fplls 142 (203)
+.|...+||.|..- .+-|+++|+. .-.+..++. ...++..+..+.. .+|.+.
T Consensus 2 ~vy~~~~C~~C~~~--------~~~L~~~~i~-y~~~dv~~~~~~~~~l~~~~g~~-~~P~v~ 54 (60)
T PF00462_consen 2 VVYTKPGCPYCKKA--------KEFLDEKGIP-YEEVDVDEDEEAREELKELSGVR-TVPQVF 54 (60)
T ss_dssp EEEESTTSHHHHHH--------HHHHHHTTBE-EEEEEGGGSHHHHHHHHHHHSSS-SSSEEE
T ss_pred EEEEcCCCcCHHHH--------HHHHHHcCCe-eeEcccccchhHHHHHHHHcCCC-ccCEEE
Confidence 45888999999653 2234567887 777777654 3344444444653 466554
No 168
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.18 Score=46.88 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=29.0
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
+| -||+-|.+.||+.|.+- .|.++++.+.|++..
T Consensus 384 ~K-dVLvEfyAPWCgHCk~l-aP~~eeLAe~~~~~~ 417 (493)
T KOG0190|consen 384 GK-DVLVEFYAPWCGHCKAL-APIYEELAEKYKDDE 417 (493)
T ss_pred cc-ceEEEEcCcccchhhhh-hhHHHHHHHHhcCCC
Confidence 45 46778999999999987 799999999999853
No 169
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.40 E-value=0.41 Score=32.59 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=31.4
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
..|...|||.|..- . ..++++|+. .--+..+. +...+++.+..+.. .+|.+.-.
T Consensus 2 ~ly~~~~Cp~C~~a-~-------~~L~~~~i~-~~~~di~~~~~~~~~~~~~~g~~-~vP~i~i~ 56 (79)
T TIGR02181 2 TIYTKPYCPYCTRA-K-------ALLSSKGVT-FTEIRVDGDPALRDEMMQRSGRR-TVPQIFIG 56 (79)
T ss_pred EEEecCCChhHHHH-H-------HHHHHcCCC-cEEEEecCCHHHHHHHHHHhCCC-CcCEEEEC
Confidence 45889999999754 2 223456776 55555543 34455555555533 46665543
No 170
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.25 E-value=0.73 Score=30.76 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=31.5
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD 143 (203)
..|..++||.|..- ...++++|+. .--+..+. ++..+++.+..+....+|.+.-
T Consensus 3 ~ly~~~~Cp~C~~a--------k~~L~~~~i~-~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 3 EIYTKPNCPYCVRA--------KALLDKKGVD-YEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEeCCCChHHHHH--------HHHHHHCCCc-EEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 45788999999653 2234456777 66776654 4444555555443112565543
No 171
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.06 E-value=0.59 Score=33.11 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=30.5
Q ss_pred ccCCCeEEEEEee---CCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808 72 IFKGKKVVIFGLP---GAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 72 l~~gk~vVL~~f~---~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls 142 (203)
+.+.++|||+.-- ..|||.|..- .+-++++|+. .-.+..+. +....+..+..|.. .+|.+.
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~a--------k~~L~~~~i~-y~~idv~~~~~~~~~l~~~~g~~-tvP~vf 68 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRKV--------VQILNQLGVD-FGTFDILEDEEVRQGLKEYSNWP-TFPQLY 68 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHHH--------HHHHHHcCCC-eEEEEcCCCHHHHHHHHHHhCCC-CCCEEE
Confidence 3456666665332 2588888643 2234456677 66666543 33333333333433 355553
No 172
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.91 E-value=0.55 Score=31.44 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=19.9
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
.|-.+|||.|.+- . +.++++|+. ..-+..+.
T Consensus 5 lys~~~Cp~C~~a-k-------~~L~~~~i~-~~~~~v~~ 35 (72)
T cd03029 5 LFTKPGCPFCARA-K-------AALQENGIS-YEEIPLGK 35 (72)
T ss_pred EEECCCCHHHHHH-H-------HHHHHcCCC-cEEEECCC
Confidence 4778999999754 2 223456777 66666554
No 173
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=90.58 E-value=0.63 Score=32.31 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=25.0
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
..|..+|||.|..- ...|+++..++ .|+. +.-+..+.
T Consensus 4 ~iy~~~~C~~C~~a-~~~L~~l~~~~--~~i~-~~~idi~~ 40 (85)
T PRK11200 4 VIFGRPGCPYCVRA-KELAEKLSEER--DDFD-YRYVDIHA 40 (85)
T ss_pred EEEeCCCChhHHHH-HHHHHhhcccc--cCCc-EEEEECCC
Confidence 45889999999876 55555555433 4677 77776653
No 174
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.43 Score=42.72 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=38.5
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQA 134 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l 134 (203)
...|+.|.+.||+.|..- +|.+.++...++. .++. +..+..+ .....++++++
T Consensus 163 ~~~lv~f~aPwc~~ck~l-~~~~~~~a~~~~~~~~v~-~~~~d~~---~~~~~~~~~~v 216 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKL-APEWEKLAKLLKSKENVE-LGKIDAT---VHKSLASRLEV 216 (383)
T ss_pred cceEEEEeccccHHhhhc-ChHHHHHHHHhccCcceE-EEeeccc---hHHHHhhhhcc
Confidence 356677789999999988 8999999999974 4555 6666555 34455555554
No 175
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=0.25 Score=46.56 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=45.3
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls 142 (203)
.-|+-|.++||+.|+.- .|.|.++++.++. .++-.|.+|.+-+. .-.+-+++++++ .||.+-
T Consensus 59 ~~lVEFy~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~~-~N~~lCRef~V~-~~Ptlr 121 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCADE-ENVKLCREFSVS-GYPTLR 121 (606)
T ss_pred hHHHHHHHhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccch-hhhhhHhhcCCC-CCceee
Confidence 45678999999999998 8999998888764 23333556655443 346789999987 577663
No 176
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=0.41 Score=36.40 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=30.1
Q ss_pred cccccCCCeEEEEEeeC-------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 69 IKDIFKGKKVVIFGLPG-------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 69 L~dl~~gk~vVL~~f~~-------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
++++-+|+.+++.|+-. +|||.|.+- .|-+.+..+.+ ..++. +|-+-+.
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~A-EPvi~~alk~a-p~~~~-~v~v~VG 74 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAA-EPVINEALKHA-PEDVH-FVHVYVG 74 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHh-hHHHHHHHHhC-CCceE-EEEEEec
Confidence 44433677644443332 499999998 79888876643 34566 6665443
No 177
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.22 E-value=0.27 Score=37.23 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=27.7
Q ss_pred CCCeEEEEEeeC------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 74 KGKKVVIFGLPG------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 74 ~gk~vVL~~f~~------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
.|++++|+|+-+ +|||.|+.- .|.+++...... .+.. +|-+.+.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~a-ep~v~~~f~~~~-~~~~-lv~v~VG~ 68 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAA-EPVVEKAFKKAP-ENAR-LVYVEVGD 68 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHH-HHHHHHHHHH-S-TTEE-EEEEE---
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHH-HHHHHHHHHhCC-CCce-EEEEEcCC
Confidence 456666665532 499999998 898888776633 3555 66666654
No 178
>PHA03050 glutaredoxin; Provisional
Probab=88.61 E-value=1.1 Score=33.03 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=13.6
Q ss_pred cCCCeEEEEEeeCCCCCCCCcc
Q 028808 73 FKGKKVVIFGLPGAYTGVCSNQ 94 (203)
Q Consensus 73 ~~gk~vVL~~f~~~~cp~C~~e 94 (203)
...++++ .|-.+|||+|..-
T Consensus 10 i~~~~V~--vys~~~CPyC~~a 29 (108)
T PHA03050 10 LANNKVT--IFVKFTCPFCRNA 29 (108)
T ss_pred hccCCEE--EEECCCChHHHHH
Confidence 3444444 3789999999753
No 179
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.59 E-value=0.44 Score=35.82 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=54.8
Q ss_pred cccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808 69 IKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS 147 (203)
Q Consensus 69 L~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~ 147 (203)
|++ ++++ ++||+|-|..--+.-..| +..|.+....+.++.+. ++.+..+...... ..+. .+....
T Consensus 3 L~~-~~w~~R~lvv~aps~~d~~~~~q-~~~L~~~~~~l~eRdi~-v~~i~~~~~~~~~-----~~~~------~~~~~~ 68 (118)
T PF13778_consen 3 LDQ-FRWKNRLLVVFAPSADDPRYQQQ-LEELQNNRCGLDERDIV-VIVITGDGARSPG-----KPLS------PEDIQA 68 (118)
T ss_pred hhH-hcCcCceEEEECCCCCCHHHHHH-HHHHHhhhhccccCceE-EEEEeCCcccccc-----CcCC------HHHHHH
Confidence 455 3444 577777777766666666 77777777788888776 7777444322111 0010 012345
Q ss_pred HHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 148 FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 148 v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
+-+.|++... .-+.++|+ ||.|...+-
T Consensus 69 lr~~l~~~~~----------~f~~vLiGKDG~vK~r~~ 96 (118)
T PF13778_consen 69 LRKRLRIPPG----------GFTVVLIGKDGGVKLRWP 96 (118)
T ss_pred HHHHhCCCCC----------ceEEEEEeCCCcEEEecC
Confidence 6667776521 12368889 999998853
No 180
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.15 E-value=1.6 Score=29.24 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=31.4
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
.|-.++||.|.+- ..-++++|+. .--+..+. +....++.+..+.. .+|.+.-.
T Consensus 5 ly~~~~C~~C~ka--------~~~L~~~gi~-~~~~di~~~~~~~~el~~~~g~~-~vP~v~i~ 58 (73)
T cd03027 5 IYSRLGCEDCTAV--------RLFLREKGLP-YVEINIDIFPERKAELEERTGSS-VVPQIFFN 58 (73)
T ss_pred EEecCCChhHHHH--------HHHHHHCCCc-eEEEECCCCHHHHHHHHHHhCCC-CcCEEEEC
Confidence 3666899999754 2234467887 77777654 34444555555543 36665443
No 181
>PRK10638 glutaredoxin 3; Provisional
Probab=88.08 E-value=1.1 Score=30.87 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=32.1
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEee
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD 143 (203)
.|-..|||.|..- ..-++++|+. .-.+..+.. ....++.+..+.. .+|.+..
T Consensus 6 ly~~~~Cp~C~~a--------~~~L~~~gi~-y~~~dv~~~~~~~~~l~~~~g~~-~vP~i~~ 58 (83)
T PRK10638 6 IYTKATCPFCHRA--------KALLNSKGVS-FQEIPIDGDAAKREEMIKRSGRT-TVPQIFI 58 (83)
T ss_pred EEECCCChhHHHH--------HHHHHHcCCC-cEEEECCCCHHHHHHHHHHhCCC-CcCEEEE
Confidence 4678999999643 2234456777 666666543 3445566666654 5777744
No 182
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=2.3 Score=29.59 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=30.6
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe--cCCHHHHHHHHHHh-CCCCceEEEeeCCc
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA--VNDPYVMNGWAEKL-QAKDVIEFYGDFDG 146 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS--~d~~~~~~~~~~~~-~l~~~fpllsD~~~ 146 (203)
.|-.++||+|.+- .. -+.++|++ ..-|- .++....+.++++. |.. .+|.+...+.
T Consensus 5 iyt~~~CPyC~~a--k~------~L~~~g~~-~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~ 62 (80)
T COG0695 5 IYTKPGCPYCKRA--KR------LLDRKGVD-YEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGK 62 (80)
T ss_pred EEECCCCchHHHH--HH------HHHHcCCC-cEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCE
Confidence 3666789999753 22 23367777 44433 33433555666666 443 4666655443
No 183
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=85.10 E-value=1.4 Score=35.13 Aligned_cols=110 Identities=12% Similarity=0.222 Sum_probs=56.6
Q ss_pred cccccCCCccccCCCceEEeccccccCCCCCCceeeeccccc--CCCeEEEEEeeCCCCCCCCccchhhHHHhHH-----
Q 028808 32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF--KGKKVVIFGLPGAYTGVCSNQHVPSYKNNID----- 104 (203)
Q Consensus 32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~--~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~----- 104 (203)
...+.+|..+ |+..+.... +| +++.|.+.+ .|++-|++|-...-.+.+... +..|.+..+
T Consensus 27 a~~l~~G~Rl----p~~~v~r~a---D~-----~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~-l~~l~~~L~~~~s~ 93 (169)
T PF07976_consen 27 AGGLRPGRRL----PSAKVVRHA---DG-----NPVHLQDDLPSDGRFRILVFAGDISLPEQLSR-LSALADYLESPSSF 93 (169)
T ss_dssp BTTS-TTCB--------EEEETT---TT-----EEEEGGGG--SSS-EEEEEEEETTTTCHCCCH-HHHHHHHHHSTTSH
T ss_pred ccCcCCcccc----CCceEEEEc---CC-----CChhHhhhcccCCCEEEEEEeCCCccchhHHH-HHHHHHHHHhcchH
Confidence 3579999996 999998753 23 899999866 488888775555545444433 444444332
Q ss_pred --HHHHcC------CcEEEEEecCC---------HHHHHHHHHHhCCCCceEEEeeC------CchHHHHcCCcc
Q 028808 105 --KFKAKG------IDSVICVAVND---------PYVMNGWAEKLQAKDVIEFYGDF------DGSFHKSLDLGK 156 (203)
Q Consensus 105 --~f~~~g------v~~vi~IS~d~---------~~~~~~~~~~~~l~~~fpllsD~------~~~v~~~yGv~~ 156 (203)
+|...+ ++ ++.|...+ |+..+.+..++++. ...+++|. .+..-+.|||..
T Consensus 94 ~~r~~~~~~~~~s~~~-~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~-~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 94 LSRFTPKDRDPDSVFD-VLLIHSSPRDEVELFDLPEIFRPFDGKRGWD-YWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp HHHHSBTTS-TTSSEE-EEEEESS-CCCS-GGGS-CCCS-EETTTTC---SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred HHhcCCCCCCCCCeeE-EEEEecCCCCceeHHHCcHhhCcccCCCCcc-ceeEEecCcccccCcccHHHhhCCCc
Confidence 333222 55 77776542 12233444445543 35666664 467778888753
No 184
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=83.38 E-value=1.8 Score=29.26 Aligned_cols=56 Identities=9% Similarity=-0.039 Sum_probs=28.3
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHH-HHHHhCCCCceEEEeeC
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNG-WAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~-~~~~~~l~~~fpllsD~ 144 (203)
+.|-..|||.|..- -..|.++.. .+. .+=+..++. ...+. ..+..+.+ .+|.+...
T Consensus 3 ~~y~~~~Cp~C~~~-~~~l~~~~~-----~~~-~~~v~~~~~~~~~~~~~~~~~g~~-~~P~v~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRA-KSLLKELGV-----KPA-VVELDQHEDGSEIQDYLQELTGQR-TVPNVFIG 60 (82)
T ss_pred EEEEcCCCHHHHHH-HHHHHHcCC-----CcE-EEEEeCCCChHHHHHHHHHHhCCC-CCCeEEEC
Confidence 45778999999753 233333211 233 555555432 23333 33444554 47776543
No 185
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=83.38 E-value=4.8 Score=31.01 Aligned_cols=34 Identities=3% Similarity=-0.083 Sum_probs=26.6
Q ss_pred eeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808 142 GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 142 sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~ 186 (203)
.|.+.+++..||+.. .|+.++..||+++...++.
T Consensus 77 iD~~~~LA~~fgV~s-----------iPTLl~FkdGk~v~~i~G~ 110 (132)
T PRK11509 77 LEQSEAIGDRFGVFR-----------FPATLVFTGGNYRGVLNGI 110 (132)
T ss_pred CCCCHHHHHHcCCcc-----------CCEEEEEECCEEEEEEeCc
Confidence 356788999999953 5766777899999998764
No 186
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=83.13 E-value=6.1 Score=31.85 Aligned_cols=68 Identities=24% Similarity=0.237 Sum_probs=49.0
Q ss_pred eeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 67 TPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 67 vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
++...|. .|-+.|++.+=.+--|-=..+-.|++.+..++.+++|.. ++.+|-++......|+++++++
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCHHHHHhhhhhcCCc
Confidence 4444432 355566666544433333333368899999999999999 9999999999999999999975
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=82.94 E-value=1.6 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
+..+++| |-.+|||.|.+- .. -+.+.|+. .-.+..|
T Consensus 6 ~~~~Vvv--ysk~~Cp~C~~a--k~------~L~~~~i~-~~~vdid 41 (99)
T TIGR02189 6 SEKAVVI--FSRSSCCMCHVV--KR------LLLTLGVN-PAVHEID 41 (99)
T ss_pred ccCCEEE--EECCCCHHHHHH--HH------HHHHcCCC-CEEEEcC
Confidence 3344544 677999999753 32 23455676 5566665
No 188
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=81.50 E-value=2.7 Score=31.17 Aligned_cols=76 Identities=7% Similarity=0.093 Sum_probs=41.9
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD 157 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~ 157 (203)
.+++|=-++.||.-..- +.+|++.++...+. +. ++-+-+-.- . |-...+++.|||.-+
T Consensus 21 ~~~iFKHSt~C~IS~~a-~~~~e~~~~~~~~~-~~-~y~l~v~~~---------R----------~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 21 PVLIFKHSTRCPISAMA-LREFEKFWEESPDE-IP-VYYLDVIEY---------R----------PVSNAIAEDFGVKHE 78 (105)
T ss_dssp EEEEEEE-TT-HHHHHH-HHHHHHHHHHHT------EEEEEGGGG---------H----------HHHHHHHHHHT----
T ss_pred cEEEEEeCCCChhhHHH-HHHHHHHhhcCCcc-ce-EEEEEEEeC---------c----------hhHHHHHHHhCCCcC
Confidence 45566667778776655 56666666655443 55 555533221 0 124568888888754
Q ss_pred cccccCCCCcceEEEEEeCCEEEEEEee
Q 028808 158 LSAALLGPRSERWSAYVEDGRIKALNVE 185 (203)
Q Consensus 158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~ 185 (203)
-|..++|.||+++|-.-.
T Consensus 79 ----------SPQ~ili~~g~~v~~aSH 96 (105)
T PF11009_consen 79 ----------SPQVILIKNGKVVWHASH 96 (105)
T ss_dssp ----------SSEEEEEETTEEEEEEEG
T ss_pred ----------CCcEEEEECCEEEEECcc
Confidence 266889999999997543
No 189
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=80.47 E-value=2.3 Score=31.43 Aligned_cols=66 Identities=9% Similarity=-0.012 Sum_probs=44.9
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--CC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--ND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+..|...+|+.|.+- .+.|+++|+. +-.+.. +. ...+++|.+..+.. +.-+....+...+.++..
T Consensus 2 i~iY~~~~C~~c~ka--------~~~L~~~gi~-~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 2 IKLYTSPSCSSCRKA--------KQWLEEHQIP-FEERNLFKQPLTKEELKEILSLTENG--VEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEEeCCCCHHHHHH--------HHHHHHCCCc-eEEEecCCCcchHHHHHHHHHHhcCC--HHHHHhcCcHHHHHcCCC
Confidence 346888999999765 2345567777 666655 22 35788999988664 554556777888887764
Q ss_pred c
Q 028808 156 K 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 71 ~ 71 (115)
T cd03032 71 I 71 (115)
T ss_pred c
Confidence 3
No 190
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=80.26 E-value=2 Score=40.77 Aligned_cols=55 Identities=11% Similarity=0.271 Sum_probs=28.9
Q ss_pred EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE--ecCCHHHHHHHHHHhCC
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV--AVNDPYVMNGWAEKLQA 134 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I--S~d~~~~~~~~~~~~~l 134 (203)
.|+++|.++||-.|..-.--.|.+....++-.|+. .+=. +.||+ .+.+..++++.
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~v-lLqaDvT~~~p-~~~~lLk~~~~ 532 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVV-LLQADVTANDP-AITALLKRLGV 532 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeE-EEEeeecCCCH-HHHHHHHHcCC
Confidence 67889999999999742011223344444444443 3322 22333 34455555543
No 191
>PTZ00062 glutaredoxin; Provisional
Probab=80.24 E-value=3.7 Score=33.91 Aligned_cols=64 Identities=8% Similarity=0.129 Sum_probs=28.6
Q ss_pred cccccCCCeEEEEEe---eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808 69 IKDIFKGKKVVIFGL---PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 69 L~dl~~gk~vVL~~f---~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls 142 (203)
+.++...+++||+.= ...+||+|.+- .+-|+++|+. ..-+..++ ........+..+.+ .+|.+.
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~--------k~~L~~~~i~-y~~~DI~~d~~~~~~l~~~sg~~-TvPqVf 173 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAV--------VNMLNSSGVK-YETYNIFEDPDLREELKVYSNWP-TYPQLY 173 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHH--------HHHHHHcCCC-EEEEEcCCCHHHHHHHHHHhCCC-CCCeEE
Confidence 344444455555433 22467766532 1223455666 55555543 33333333333443 355443
No 192
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=79.92 E-value=9.1 Score=26.62 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=11.5
Q ss_pred EEEeeCCCCCCCCcc
Q 028808 80 IFGLPGAYTGVCSNQ 94 (203)
Q Consensus 80 L~~f~~~~cp~C~~e 94 (203)
++.|-.+|||.|.+-
T Consensus 2 V~vys~~~Cp~C~~a 16 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA 16 (86)
T ss_pred EEEEeCCCCccHHHH
Confidence 345788999999753
No 193
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=78.55 E-value=2.1 Score=30.95 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=40.4
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
..|-..+||.|.+- .+.++++|+. +-.+... +...++++..+.+.. +.-+....+...+..+..
T Consensus 2 ~iY~~~~C~~c~ka--------~~~L~~~~i~-~~~idi~~~~~~~~~l~~~~~~~~~~--~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 2 TIYGNPNCSTSRKA--------LAWLEEHGIE-YEFIDYLKEPPTKEELKELLAKLGLG--VEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEEECCCCHHHHHH--------HHHHHHcCCC-cEEEeeccCCCCHHHHHHHHHhcCCC--HHHHHhcCCchHHHcCCc
Confidence 45888999999764 2334566776 5555542 245678888887753 333445566666666664
No 194
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=78.47 E-value=17 Score=28.78 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCceEEeccccccCCCCCCceeeeccccc--CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC------------
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIF--KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG------------ 110 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~--~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g------------ 110 (203)
.|++.+.... ++ +++.|.+.+ .|++-|++ |.++--+ ..+ ...+.++.+.+....
T Consensus 4 ~~~a~V~r~a---D~-----~p~~L~~~~~adGrfrI~v-Fagd~~~--~~~-~~~l~~~~~~L~~~~~~~~~~~~~~~~ 71 (167)
T cd02979 4 FPSAPVVRQA---DA-----LPVHLGHRLPADGRFRIYV-FAGDIAP--AQQ-KSRLTQLCDALDSPDSFPLRYTPRGAD 71 (167)
T ss_pred CCCceEEEec---CC-----CCHhHhhhccCCCCEEEEE-EcCCCCc--hhH-HHHHHHHHHHHcCCcchHhhcCCCCCC
Confidence 3888887653 23 677777765 47877766 4444332 233 455656555553221
Q ss_pred ----CcEEEEEecCCH---------HHHHHHHHHhCCCCceEEEeeCC------chHHHHcCCccccccccCCCCcceEE
Q 028808 111 ----IDSVICVAVNDP---------YVMNGWAEKLQAKDVIEFYGDFD------GSFHKSLDLGKDLSAALLGPRSERWS 171 (203)
Q Consensus 111 ----v~~vi~IS~d~~---------~~~~~~~~~~~l~~~fpllsD~~------~~v~~~yGv~~~~~~~g~~~~~~r~t 171 (203)
++ ++.|..... .....+.++.+.. ...++.|.. +...+.||+..+ ..+.
T Consensus 72 ~~~~~~-~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~-~~~v~~d~~~~~~~~~~~~~~~gv~~~----------~g~v 139 (167)
T cd02979 72 PDSVFD-VVTIHAAPRREIELLDLPAVLRPFGEKKGWD-YEKIYADDDSYHEGHGDAYEKYGIDPE----------RGAV 139 (167)
T ss_pred CCCcEE-EEEEecCCccccchhhCcHhhcCCCCccccc-eeeEEecCccccCCcccHHHhhCCCCC----------CCCE
Confidence 33 556654321 2222222333332 234566654 568888998532 1236
Q ss_pred EEEe-CCEEEEEEe
Q 028808 172 AYVE-DGRIKALNV 184 (203)
Q Consensus 172 fIId-dG~I~~~~~ 184 (203)
++|. ||-|-++.-
T Consensus 140 vvvRPDgyVg~~~~ 153 (167)
T cd02979 140 VVVRPDQYVALVGP 153 (167)
T ss_pred EEECCCCeEEEEec
Confidence 7888 998877643
No 195
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.38 E-value=2.3 Score=32.44 Aligned_cols=66 Identities=5% Similarity=-0.021 Sum_probs=43.5
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--CC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--ND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+..|-..+||.|.+- . ..++++|+. +-.+.. +. ...+.+|.+..+.. +.-+....+...+.++..
T Consensus 2 i~iY~~~~C~~C~ka-~-------~~L~~~gi~-~~~idi~~~~~~~~eL~~~l~~~~~g--~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKA-K-------AWLEEHDIP-FTERNIFSSPLTIDEIKQILRMTEDG--TDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHH-H-------HHHHHcCCC-cEEeeccCChhhHHHHHHHHHHhcCC--HHHHHhcCcHHHHhCCCC
Confidence 446888999999865 3 334566777 666654 22 35688899888653 444556677777777665
Q ss_pred c
Q 028808 156 K 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 71 ~ 71 (131)
T PRK01655 71 V 71 (131)
T ss_pred c
Confidence 4
No 196
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=77.42 E-value=7.1 Score=30.99 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=48.4
Q ss_pred eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH---HHHHHHHHHh-----CCCCc
Q 028808 66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP---YVMNGWAEKL-----QAKDV 137 (203)
Q Consensus 66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~---~~~~~~~~~~-----~l~~~ 137 (203)
+++.+|. .|. + +-..-.+|+ | +...+++.+++++|.. ++-+|.-.. ...+.|.+++ ++| .
T Consensus 9 TiT~SD~-~G~-i-~~~~G~d~~------h-~g~~~l~~~i~~~GY~-ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP-~ 76 (157)
T PF08235_consen 9 TITKSDV-LGH-I-LPILGKDWT------H-PGAAELYRKIADNGYK-ILYLTARPIGQANRTRSWLAQHQQQGHNLP-D 76 (157)
T ss_pred CcCccch-hhh-h-hhccCchhh------h-hcHHHHHHHHHHCCeE-EEEECcCcHHHHHHHHHHHHHHHhCCccCC-C
Confidence 7899984 675 2 222333455 5 7788889999999998 999987653 4578898888 777 4
Q ss_pred eEEEeeCCc
Q 028808 138 IEFYGDFDG 146 (203)
Q Consensus 138 fpllsD~~~ 146 (203)
=|++.-|++
T Consensus 77 Gpv~~sP~~ 85 (157)
T PF08235_consen 77 GPVLLSPDS 85 (157)
T ss_pred CCEEECCcc
Confidence 566655543
No 197
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=77.41 E-value=3.8 Score=34.78 Aligned_cols=23 Identities=4% Similarity=0.185 Sum_probs=16.9
Q ss_pred EEEEEeeCCCCCCCCccchhhHHH
Q 028808 78 VVIFGLPGAYTGVCSNQHVPSYKN 101 (203)
Q Consensus 78 vVL~~f~~~~cp~C~~ehl~~l~~ 101 (203)
.+|+.|--..||+|++-| .++.+
T Consensus 119 ~~I~vFtDp~CpyC~kl~-~~l~~ 141 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFW-QQARP 141 (251)
T ss_pred eEEEEEECCCChhHHHHH-HHHHH
Confidence 566678889999998773 55544
No 198
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=76.85 E-value=2.4 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=39.4
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--CC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--ND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.|-..+||.|.+- . +.++++|+. +--+.. +. ...+++|.++.+.+ +.-+....+...+.+++.
T Consensus 3 iY~~~~C~~c~ka-~-------~~L~~~~i~-~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 3 FYEYPKCSTCRKA-K-------KWLDEHGVD-YTAIDIVEEPPSKEELKKWLEKSGLP--LKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEECCCCHHHHHH-H-------HHHHHcCCc-eEEecccCCcccHHHHHHHHHHcCCC--HHHHHhcCCchHHhCCcc
Confidence 5788999999865 2 334556776 555544 32 35678898888764 333334555566666654
No 199
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=76.60 E-value=7.6 Score=32.02 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=43.1
Q ss_pred EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe-cCCHHHHHHHHHHhCCC------CceEEEeeCCchHHHH
Q 028808 79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA-VNDPYVMNGWAEKLQAK------DVIEFYGDFDGSFHKS 151 (203)
Q Consensus 79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS-~d~~~~~~~~~~~~~l~------~~fpllsD~~~~v~~~ 151 (203)
+.+|.- +.|+.|..- +..+.. ....++ |+.|- ..+....+.|+.+++++ ..+.+ ..+.--..+
T Consensus 112 lalFvk-d~C~~C~~~-~~~l~a-----~~~~~D-iylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITL--NHD~G~w~~ 181 (200)
T TIGR03759 112 LALFVK-DDCVACDAR-VQRLLA-----DNAPLD-LYLVGSQGDDERIRQWANRHQIDPAKVRSRQITL--NHDNGRWLQ 181 (200)
T ss_pred EEEEeC-CCChHHHHH-HHHHhc-----CCCcee-EEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEE--ecCcchHHH
Confidence 444444 999999766 555533 234566 77664 55677899999999985 13444 333444456
Q ss_pred cCCcc
Q 028808 152 LDLGK 156 (203)
Q Consensus 152 yGv~~ 156 (203)
||+..
T Consensus 182 lg~~g 186 (200)
T TIGR03759 182 LGLQG 186 (200)
T ss_pred ccCCC
Confidence 77743
No 200
>PRK05370 argininosuccinate synthase; Validated
Probab=76.36 E-value=3.4 Score=38.10 Aligned_cols=71 Identities=17% Similarity=-0.018 Sum_probs=50.1
Q ss_pred ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-------HHHHHHHHHHhCCCCceEE
Q 028808 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-------PYVMNGWAEKLQAKDVIEF 140 (203)
Q Consensus 68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-------~~~~~~~~~~~~l~~~fpl 140 (203)
.|++|.+|++|||.+--|-.+.+|. +.|. ++|++ |++++.|- .+..++-+.+.|.. =-+
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l----~wL~-------e~~~e-Via~~aDvGQ~~~ed~~~i~~kA~~~GA~--~~~ 69 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAAL----LWMR-------QKGAV-PYAYTANLGQPDEDDYDAIPRRAMEYGAE--NAR 69 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHH----HHHH-------hcCCe-EEEEEEECCCCCccchHHHHHHHHHhCCC--EEE
Confidence 4677668888888766778888884 3343 34788 99988763 13566667777774 346
Q ss_pred EeeCCchHHHHc
Q 028808 141 YGDFDGSFHKSL 152 (203)
Q Consensus 141 lsD~~~~v~~~y 152 (203)
+.|...++++.|
T Consensus 70 viDlr~eF~e~~ 81 (447)
T PRK05370 70 LIDCRAQLVAEG 81 (447)
T ss_pred EeccHHHHHHHH
Confidence 668888888776
No 201
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=76.25 E-value=2 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHH
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK 107 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~ 107 (203)
++.|+.|.--+||.|..- .+.+.++..++.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~-~~~l~~~~~~~~ 35 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKL-APELEKLLKEDP 35 (154)
T ss_pred CEEEEEEECCCChhHHHh-hHHHHHHHHHCC
Confidence 467778889999999987 588877665553
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=75.98 E-value=8.1 Score=28.99 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=29.3
Q ss_pred cccCCCeEEEEEeeC----CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEe
Q 028808 71 DIFKGKKVVIFGLPG----AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 71 dl~~gk~vVL~~f~~----~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~~~~~~~~~~~~l~~~fplls 142 (203)
++...++||| |--+ .|||+|.+- .. -|++.|++ .-.+..+ ++....+..+.-+.+ .+|-+.
T Consensus 10 ~~I~~~~Vvv-f~Kg~~~~p~Cpyc~~a--k~------lL~~~~i~-~~~idi~~d~~~~~~l~~~sg~~-TVPQIF 75 (115)
T PRK10824 10 RQIAENPILL-YMKGSPKLPSCGFSAQA--VQ------ALSACGER-FAYVDILQNPDIRAELPKYANWP-TFPQLW 75 (115)
T ss_pred HHHhcCCEEE-EECCCCCCCCCchHHHH--HH------HHHHcCCC-ceEEEecCCHHHHHHHHHHhCCC-CCCeEE
Confidence 3334444544 4444 499999753 22 23344565 4444444 333333344444544 355443
No 203
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=74.79 E-value=4.3 Score=30.05 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.1
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL 154 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv 154 (203)
.|...+||.|.+- . ..++++|+. +-.+.... .....+|.+..+.. +.-+.+..+...+.++.
T Consensus 3 iY~~~~C~~c~ka-~-------~~L~~~~i~-~~~idi~~~~~~~~el~~l~~~~~~~--~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKA-R-------RWLEANGIE-YQFIDIGEDGPTREELLDILSLLEDG--IDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHH-H-------HHHHHcCCc-eEEEecCCChhhHHHHHHHHHHcCCC--HHHheeCCCcchhhCCc
Confidence 5788999999764 2 334556777 66666532 24577888888863 54455677777777775
No 204
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=73.39 E-value=37 Score=29.35 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH------HcCCcEEEEEe
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK------AKGIDSVICVA 118 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~------~~gv~~vi~IS 118 (203)
.|-|++.|.+| +.+-.+. -.|+++.-+| |..+ ..=++..++++ ..+++ |+.||
T Consensus 82 VPVFtItn~~G---------~pvl~s~-~~~~~~~gvf--------~s~q--edA~afL~~lk~~~p~l~~~~k-V~pvs 140 (270)
T TIGR00995 82 TSVFTVSNAQN---------EFVLASD-NDGEKSIGLL--------CFRQ--EDAEAFLAQLRKRKPEVGSQAK-VVPIT 140 (270)
T ss_pred CceEEEEcCCC---------CeEEEEC-CCCCceEEEE--------ECCH--HHHHHHHHHHHhhCccccCCce-EEEEE
Confidence 38999998875 5555554 2343344432 3322 11222333332 23577 99999
Q ss_pred cCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 119 VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 119 ~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.+..+.+ .+.++. |.++.|+ .++..+.++.
T Consensus 141 L~~vYkl----~~e~l~--F~fiP~~-~qV~~A~~ll 170 (270)
T TIGR00995 141 LDQVYKL----KVEGIG--FRFLPDP-AQIKNALELP 170 (270)
T ss_pred HHHHHHH----hhcCcc--EEEeCCH-HHHHHHHHHH
Confidence 9887655 234465 9999997 3333334433
No 205
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=73.04 E-value=12 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCeEEEEEeeCC----CCCCCCccch--hhHHHhHHHHHHcCCcEEEEEecCCHH
Q 028808 74 KGKKVVIFGLPGA----YTGVCSNQHV--PSYKNNIDKFKAKGIDSVICVAVNDPY 123 (203)
Q Consensus 74 ~gk~vVL~~f~~~----~cp~C~~ehl--~~l~~~~~~f~~~gv~~vi~IS~d~~~ 123 (203)
++| .+++.+..+ ||.+|+.- + +++.+.. +.++- +++.+.++++
T Consensus 16 e~K-~llVylhs~~~~~~~~fc~~~-l~~~~v~~~l----n~~fv-~w~~dv~~~e 64 (116)
T cd02991 16 ELR-FLLVYLHGDDHQDTDEFCRNT-LCAPEVIEYI----NTRML-FWACSVAKPE 64 (116)
T ss_pred hCC-EEEEEEeCCCCccHHHHHHHH-cCCHHHHHHH----HcCEE-EEEEecCChH
Confidence 566 455666666 77777532 2 2333322 33454 6666666654
No 206
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=71.90 E-value=5.9 Score=31.53 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=72.2
Q ss_pred ccccCCCccccCCCceEEeccccc--cCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH-hHHHHHHc
Q 028808 33 ASVAVGSDIVSAAQDVSLQKARTW--DEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN-NIDKFKAK 109 (203)
Q Consensus 33 ~~~~~G~~~~~~APdf~l~~~~g~--~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~-~~~~f~~~ 109 (203)
..+++|+++ |.+-+.+- |. -+|.+-..+.+..++| -|| |=++..-+--+.. +| .+. +.+-++..
T Consensus 21 Hnlq~~q~v----p~VgV~~~-GEl~l~~~~~~y~~W~SAqL-~GK-vRV~~hiAGRtsa--KE----~Na~lieaIk~a 87 (184)
T COG3054 21 HNLQLGQRV----PPVGVADR-GELVLDKDQFSYKTWNSAQL-VGK-VRVLQHIAGRTSA--KE----KNATLIEAIKSA 87 (184)
T ss_pred hhcccCCcC----CCcccccc-ceEEecCcceeecccchhhc-cch-hhhhhhhhcccch--hh----hchHHHHHHHhc
Confidence 468899995 77665442 10 0011122456777774 787 3333443333321 12 211 22223322
Q ss_pred CC-----cEEEEEecCCHH-H----HHHHHHHhC--CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-C
Q 028808 110 GI-----DSVICVAVNDPY-V----MNGWAEKLQ--AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-D 176 (203)
Q Consensus 110 gv-----~~vi~IS~d~~~-~----~~~~~~~~~--l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d 176 (203)
.+ +.--.|+.||.- - .+.=+++.+ ++ --.++.|..+..-.++++..+. -+.+++| +
T Consensus 88 ~fp~~~YQTTTIiN~DDAi~GtgmFVkssae~~Kke~p-wSq~vlD~~gvak~AWqL~e~~----------SaivVlDk~ 156 (184)
T COG3054 88 KFPHDRYQTTTIINTDDAIPGTGMFVKSSAESNKKEYP-WSQFVLDSNGVAKNAWQLKEES----------SAVVVLDKD 156 (184)
T ss_pred cCChHHceeeEEeccCCccccccceeecchhhccccCC-ceeeEEccchhhhhhhcccccc----------ceEEEEcCC
Confidence 11 113346677631 1 222233332 22 1356779888444489997542 2356669 9
Q ss_pred CEEEEEEeecCCCCcccCCHHHHHhc
Q 028808 177 GRIKALNVEEAPSKMKVSGGDVILGQ 202 (203)
Q Consensus 177 G~I~~~~~~~~~~~~~~~~a~~vL~~ 202 (203)
|+|.+++-+. ++-.+.++|+..
T Consensus 157 G~VkfvkeGa----Lt~aevQ~Vi~l 178 (184)
T COG3054 157 GRVKFVKEGA----LTQAEVQQVIDL 178 (184)
T ss_pred CcEEEEecCC----ccHHHHHHHHHH
Confidence 9999998654 445677777654
No 207
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=70.19 E-value=27 Score=27.39 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC------C--chHHHHcCCc
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF------D--GSFHKSLDLG 155 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~------~--~~v~~~yGv~ 155 (203)
.|...+..+++++.|+. +..+|-|+.......+++.|+. ..-+.++. . ..+.+.+++.
T Consensus 129 ~~~~~~~l~~L~~~Gi~-~~i~TGD~~~~a~~~~~~lgi~-~~~v~a~~~~kP~~k~~~~~i~~l~~~ 194 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIK-VAILTGDNESTASAIAKQLGIF-DSIVFARVIGKPEPKIFLRIIKELQVK 194 (215)
T ss_dssp HTTHHHHHHHHHHTTEE-EEEEESSEHHHHHHHHHHTTSC-SEEEEESHETTTHHHHHHHHHHHHTCT
T ss_pred hhhhhhhhhhhhccCcc-eeeeeccccccccccccccccc-cccccccccccccchhHHHHHHHHhcC
Confidence 46788888999999998 9999999999999999999995 34344443 2 4566777764
No 208
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.59 E-value=6.9 Score=33.41 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=27.4
Q ss_pred eeeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808 65 ATTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA 108 (203)
Q Consensus 65 ~~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~ 108 (203)
-+++-.|+. .|| +.+++.-+.|||+|-.+ .=.|-....+|..
T Consensus 47 ~kvsn~d~~~~Gk-~~v~~igw~gCP~~A~~-sW~L~~ALsrfGn 89 (249)
T PF06053_consen 47 FKVSNQDLAPNGK-PEVIFIGWEGCPYCAAE-SWALYIALSRFGN 89 (249)
T ss_pred eeecCcccCCCCe-eEEEEEecccCccchhh-HHHHHHHHHhcCC
Confidence 344445543 355 67778899999999988 4445555555644
No 209
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=69.17 E-value=7.7 Score=25.55 Aligned_cols=53 Identities=6% Similarity=-0.164 Sum_probs=26.6
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcE-EEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS-VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~-vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
.|...|||.|.+- .-.+ +++|+.. ++-+...+. ...+.+.+... .+|++.+.+
T Consensus 3 ly~~~~~p~~~rv-~~~L-------~~~gl~~e~~~v~~~~~--~~~~~~~np~~-~vP~L~~~~ 56 (71)
T cd03060 3 LYSFRRCPYAMRA-RMAL-------LLAGITVELREVELKNK--PAEMLAASPKG-TVPVLVLGN 56 (71)
T ss_pred EEecCCCcHHHHH-HHHH-------HHcCCCcEEEEeCCCCC--CHHHHHHCCCC-CCCEEEECC
Confidence 4667899999754 2222 2334430 444443221 23444444332 578877653
No 210
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=66.90 E-value=6.5 Score=34.79 Aligned_cols=65 Identities=9% Similarity=0.164 Sum_probs=39.5
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls 142 (203)
++....++.|.+.||..|.+-| |-..+.--++++.|.. |=.=-.| .-.-.+-+.++++. .||-+-
T Consensus 41 kdddiW~VdFYAPWC~HCKkLe-PiWdeVG~elkdig~P-ikVGKlD-aT~f~aiAnefgiq-GYPTIk 105 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLE-PIWDEVGHELKDIGLP-IKVGKLD-ATRFPAIANEFGIQ-GYPTIK 105 (468)
T ss_pred ccCCeEEEEeechhhhhccccc-chhHHhCcchhhcCCc-eeecccc-cccchhhHhhhccC-CCceEE
Confidence 3334677899999999999874 7777776777777765 3221122 11223455666664 354443
No 211
>PRK12559 transcriptional regulator Spx; Provisional
Probab=65.71 E-value=8.4 Score=29.39 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=42.4
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--C--CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--N--DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d--~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+..|-..+|+.|.+- . ..++++|+. +-.+.. + +....+.|.+..+.. +.-+....+...+.+++.
T Consensus 2 i~iY~~~~C~~crkA-~-------~~L~~~gi~-~~~~di~~~~~s~~el~~~l~~~~~g--~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 2 VVLYTTASCASCRKA-K-------AWLEENQID-YTEKNIVSNSMTVDELKSILRLTEEG--ATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEEeCCCChHHHHH-H-------HHHHHcCCC-eEEEEeeCCcCCHHHHHHHHHHcCCC--HHHHHhcCcHHHHhCCCC
Confidence 346788899999865 3 334566777 555543 3 346788999986553 333445667777777765
Q ss_pred c
Q 028808 156 K 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 71 ~ 71 (131)
T PRK12559 71 I 71 (131)
T ss_pred c
Confidence 3
No 212
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=64.82 E-value=38 Score=25.11 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=43.2
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
..-|.+..+++++.+.. =+.|++++....++..+-- + ..+++-...-.+++.+|+.
T Consensus 37 ~~WL~~~~~~L~~l~Av-GlVVnV~t~~~l~~Lr~la--p-gl~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 37 RQWLQQNAAALKSLGAV-GLVVNVETAAALQRLRALA--P-GLPLLPVSGDDLAERLGLR 92 (105)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCHHHHHHHHHHc--C-CCcccCCCHHHHHHHhCCC
Confidence 56788999999999987 8889999987666555443 2 3666777778899999885
No 213
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=63.03 E-value=43 Score=26.14 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=44.1
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
..-|.+..+++++.+.. =+.|++++...+++..+-- + ..+++-.....+++.+|+.
T Consensus 75 ~~WL~~~~~~L~~l~Av-GlVVNV~t~~~L~~Lr~la--p-gl~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAV-GLVVNVATEAALQRLRQLA--P-GLPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCHHHHHHHHHHc--C-CCeecCCCHHHHHHHhCCC
Confidence 57788999999999988 8889999987776665544 1 2666767778899999885
No 214
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=62.82 E-value=33 Score=31.98 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
...+|.. +|+..+.. +| +.++|.|++.+++++| .|.+. . . .....+. .+....++.
T Consensus 426 ~~~pG~r----~p~~~~~~-~~---------~~~~l~dl~g~~f~ll-~~~~~----~--~-~~~~~~~-~~~~~~~~~- 481 (547)
T PRK08132 426 GPVPGAP----APDAPVRA-DG---------EPGWLLDLLGGGFTLL-LFGDD----A--A-AAALLQA-LAAAALPVR- 481 (547)
T ss_pred CCCCCCC----CCCCcccC-CC---------CceEHHHhcCCCEEEE-EecCC----c--h-hhhhhhh-hhccCCceE-
Confidence 3567888 59988753 32 5678999875555554 44321 0 0 1111111 112234454
Q ss_pred EEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808 114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV 184 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~ 184 (203)
++.+..+... ... ...+.|.++.+.+.||+... ..+||. ||-|-+++.
T Consensus 482 ~~~~~~~~~~---------~~~--~~~~~d~~~~~~~~~~~~~~------------~~~LvRPDg~va~~~~ 530 (547)
T PRK08132 482 VVAVVPAGAA---------QAA--AGVLEDADGLAAERYDARPG------------TVYLIRPDQHVAARWR 530 (547)
T ss_pred EEEEecCccc---------ccC--cccccCcccHHHHHhCCCCC------------eEEEECCCceEEEEec
Confidence 5666544311 011 33567999999999998531 268998 999998864
No 215
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=61.69 E-value=37 Score=24.92 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=40.1
Q ss_pred cCCCeEEEEEeeCCCCCCCCccchh------hHHHhH-HHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 73 FKGKKVVIFGLPGAYTGVCSNQHVP------SYKNNI-DKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 73 ~~gk~vVL~~f~~~~cp~C~~ehl~------~l~~~~-~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
++|..+++ ..++.+|+.|-.+ .- .+.+.. +.++++. +.-.+...+...++.+++ .
T Consensus 20 ~~G~~~~v-~~~~~~C~~CGe~-~~~~e~~~~~~~~i~~~~~~~~-------~~~~~~~i~~~r~~~glt---------q 81 (127)
T TIGR03830 20 YKGESITI-GVPGWYCPACGEE-LLDPEESKRNSAALADFYRKVD-------GLLTPPEIRRIRKKLGLS---------Q 81 (127)
T ss_pred EcCEEEEE-eeeeeECCCCCCE-EEcHHHHHHHHHHHHHHHHHcc-------CCcCHHHHHHHHHHcCCC---------H
Confidence 47874444 9999999999876 32 222222 2222221 122445677888888885 5
Q ss_pred chHHHHcCCcc
Q 028808 146 GSFHKSLDLGK 156 (203)
Q Consensus 146 ~~v~~~yGv~~ 156 (203)
.++++.+|+..
T Consensus 82 ~~lA~~lg~~~ 92 (127)
T TIGR03830 82 REAAELLGGGV 92 (127)
T ss_pred HHHHHHhCCCH
Confidence 57888888753
No 216
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=60.83 E-value=32 Score=27.44 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=41.6
Q ss_pred eecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC-
Q 028808 67 TPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD- 145 (203)
Q Consensus 67 vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~- 145 (203)
+..+. -++| .|++.+-.+||..|..- .. + .+. +++ +.++..++ + +|+..|.+
T Consensus 30 ~~~Ak-~e~K-pIfl~ig~~~C~wChvM--~~-----e-----sf~--------d~e-Va~~lN~~-F---I~VkvDree 82 (163)
T PF03190_consen 30 LEKAK-KENK-PIFLSIGYSWCHWCHVM--ER-----E-----SFS--------DPE-VAEYLNRN-F---IPVKVDREE 82 (163)
T ss_dssp HHHHH-HHT---EEEEEE-TT-HHHHHH--HH-----H-----TTT---------HH-HHHHHHHH-----EEEEEETTT
T ss_pred HHHHH-hcCC-cEEEEEEecCCcchhhh--cc-----c-----CcC--------CHH-HHHHHhCC-E---EEEEecccc
Confidence 44444 2566 67778889999988531 10 1 122 332 34444444 2 55666653
Q ss_pred -chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808 146 -GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE 186 (203)
Q Consensus 146 -~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~ 186 (203)
..+.+.|.-..... .|. ..+|.+++++ +|+..+.-..-
T Consensus 83 ~Pdid~~y~~~~~~~-~~~--gGwPl~vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 83 RPDIDKIYMNAVQAM-SGS--GGWPLTVFLTPDGKPFFGGTYF 122 (163)
T ss_dssp -HHHHHHHHHHHHHH-HS-----SSEEEEE-TTS-EEEEESS-
T ss_pred CccHHHHHHHHHHHh-cCC--CCCCceEEECCCCCeeeeeeec
Confidence 34555542111000 011 1478899999 99999875543
No 217
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=60.60 E-value=14 Score=28.23 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=43.4
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK 156 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~ 156 (203)
..|-..+|+.|++- .+.++++|+. +-.+... +......|.++.+.. +.-+....+...+.++...
T Consensus 3 ~iY~~~~C~~crkA--------~~~L~~~~i~-~~~~d~~~~~~s~~eL~~~l~~~~~~--~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 3 KIYTISSCTSCKKA--------KTWLNAHQLS-YKEQNLGKEPLTKEEILAILTKTENG--IESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEeCCCCHHHHHH--------HHHHHHcCCC-eEEEECCCCCCCHHHHHHHHHHhCCC--HHHhhccCcHHHHhCCcch
Confidence 35777899999754 2445667777 6666543 336788999998764 4445556777777777543
No 218
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=59.94 E-value=22 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQA 134 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l 134 (203)
.+.+.+..+++++.|+. ++.+|......++.+.+.+++
T Consensus 26 ~~~~~~~l~~l~~~g~~-i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIK-LALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCe-EEEEeCchHHHHHHHHHHcCC
Confidence 47778888889999998 999998888888999999886
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=58.48 E-value=17 Score=33.11 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=24.7
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHH
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~ 130 (203)
-|-.+|||.|.+- . .-++++|+. .-.|..+......++.+
T Consensus 6 vys~~~Cp~C~~a--K------~~L~~~gi~-~~~idi~~~~~~~~~~~ 45 (410)
T PRK12759 6 IYTKTNCPFCDLA--K------SWFGANDIP-FTQISLDDDVKRAEFYA 45 (410)
T ss_pred EEeCCCCHHHHHH--H------HHHHHCCCC-eEEEECCCChhHHHHHH
Confidence 4889999999753 2 234567887 66676664333344433
No 220
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.86 E-value=15 Score=29.52 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.4
Q ss_pred CCCeEEEEEeeCCCCCCCCc
Q 028808 74 KGKKVVIFGLPGAYTGVCSN 93 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ 93 (203)
.+|+ +++.|-..-|++|..
T Consensus 41 ~~Ky-lllmfes~~C~yC~~ 59 (182)
T COG2143 41 NDKY-LLLMFESNGCSYCER 59 (182)
T ss_pred cCcE-EEEEEcCCCChHHHH
Confidence 5675 555689999999964
No 221
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=57.39 E-value=15 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=23.0
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCC---cEEEEEe
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGI---DSVICVA 118 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv---~~vi~IS 118 (203)
.|-.|||.|- |-.-++.....+.+.|. + ++.+|
T Consensus 16 ~~~~~CpGCg--~~~i~~~i~~al~~l~l~p~d-~vivs 51 (301)
T PRK05778 16 LPTTWCPGCG--NFGILNAIIQALAELGLDPDK-VVVVS 51 (301)
T ss_pred CCCCCCCCCC--ChHHHHHHHHHHHHhcCCCCC-EEEEe
Confidence 4667999997 45777777777777654 4 55554
No 222
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=57.29 E-value=43 Score=22.32 Aligned_cols=53 Identities=13% Similarity=-0.000 Sum_probs=27.3
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH-HHHHHHHHhCCCCceEEEeeC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY-VMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~-~~~~~~~~~~l~~~fpllsD~ 144 (203)
.|-..+||.|.+- .- -++++|+. .-.+..+... ...++.+.++.. .+|++-|.
T Consensus 4 Ly~~~~sp~~~kv-~~-------~L~~~gi~-y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~ 57 (77)
T cd03041 4 LYEFEGSPFCRLV-RE-------VLTELELD-VILYPCPKGSPKRDKFLEKGGKV-QVPYLVDP 57 (77)
T ss_pred EecCCCCchHHHH-HH-------HHHHcCCc-EEEEECCCChHHHHHHHHhCCCC-cccEEEeC
Confidence 4666789999754 12 23345654 3223333222 234555544442 57888764
No 223
>PRK06184 hypothetical protein; Provisional
Probab=55.86 E-value=52 Score=30.31 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccC-CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFK-GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~-gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
.+.+|.. +|++.+...+| +.+++.|++. +++++|. |-+. . ... ....|+.
T Consensus 385 ~~~~G~r----~p~~~~~~~~~---------~~~~l~d~~~~~~~~ll~-~~~~-------~-~~~-------~~~~~~~ 435 (502)
T PRK06184 385 GLRAGDR----APDAPLLGAAG---------QPTRLFDLFRGPHWTLLA-FGAG-------A-AAI-------LARRGLR 435 (502)
T ss_pred CCCCcCC----CCCchhccCCC---------ceeeHHHhhCCCcEEEEE-ecCC-------c-hhh-------hhhcCce
Confidence 3668998 59998865443 5678888776 4566654 4221 1 111 1244666
Q ss_pred EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808 113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN 183 (203)
Q Consensus 113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~ 183 (203)
++.+.... . ...+.|.++.+.+.||+... ..+||. ||-|-++.
T Consensus 436 -~~~~~~~~-------------~--~~~~~d~~g~~~~~~~~~~~------------~~~lvRPDg~v~~~~ 479 (502)
T PRK06184 436 -IHRVGDAA-------------E--GGDLVDDAGHFRDAYGLTGG------------TLVLVRPDGYVGLIA 479 (502)
T ss_pred -EEEecccC-------------C--CCceeCCCccHHHHhcCCCC------------cEEEECCCcceEEEe
Confidence 66654321 1 23467999999999998531 268898 99998873
No 224
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=55.49 E-value=19 Score=30.29 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred eeCCCCCCCCccchhh--HHHhHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEe
Q 028808 83 LPGAYTGVCSNQHVPS--YKNNIDKFKAKGIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~--l~~~~~~f~~~gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fplls 142 (203)
||..|+-.|..+.+|. ..++.+.++++|+. +..||.- .....+...+.++++..|+++.
T Consensus 101 ~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~-i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~ 165 (237)
T TIGR01672 101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDA-IFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIF 165 (237)
T ss_pred HHHHHHHhcccCCcchhHHHHHHHHHHHCCCE-EEEEeCCCCCcCHHHHHHHHHHhCCchheeEEE
Confidence 4666666665543454 67788889999998 8888764 3345667777788863455543
No 225
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=55.24 E-value=21 Score=26.04 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--C--CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--N--DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d--~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.+|...+|+.|++. . +.+++.|+. +-.+.. + +....++|.++.|+. . +....+...+.+++.
T Consensus 2 ~iy~~~~C~~crka-~-------~~L~~~~i~-~~~~di~~~p~s~~eL~~~l~~~g~~---~-li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKA-R-------KWLEARGVA-YTFHDYRKDGLDAATLERWLAKVGWE---T-LLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHH-H-------HHHHHcCCC-eEEEecccCCCCHHHHHHHHHHhChH---H-HHccCchHHHhCChh
Confidence 46888999999865 3 334556776 555543 3 346788999888742 1 223455666666554
No 226
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=52.82 E-value=89 Score=24.99 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred CCceEEeccccccCCCCCCceeeeccc--cc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc-EEEEEecC
Q 028808 45 AQDVSLQKARTWDEGVSSNFATTPIKD--IF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID-SVICVAVN 120 (203)
Q Consensus 45 APdf~l~~~~g~~~G~~~~~~~vsL~d--l~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~-~vi~IS~d 120 (203)
.|+..+++.. .+++.. +. .|-+.|++.+=.+-+++=..+--|++.+..+++++.+.. .|+.||-+
T Consensus 18 ~P~l~V~si~-----------~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs 86 (168)
T PF09419_consen 18 LPHLYVPSIR-----------DIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNS 86 (168)
T ss_pred CCCEEcCChh-----------hCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 4888888763 345444 42 354678877766666655555237788888888877542 37777765
Q ss_pred -------CHHHHHHHHHHhCCC
Q 028808 121 -------DPYVMNGWAEKLQAK 135 (203)
Q Consensus 121 -------~~~~~~~~~~~~~l~ 135 (203)
+....+.+.+.++++
T Consensus 87 aGs~~d~~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 87 AGSSDDPDGERAEALEKALGIP 108 (168)
T ss_pred CCcccCccHHHHHHHHHhhCCc
Confidence 234566677777764
No 227
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=51.97 E-value=36 Score=32.73 Aligned_cols=121 Identities=9% Similarity=0.101 Sum_probs=65.7
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeeccccc--CCCeEEEEEeeCCCC-CCCCccchhhHHHhHHHHH---
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF--KGKKVVIFGLPGAYT-GVCSNQHVPSYKNNIDKFK--- 107 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~--~gk~vVL~~f~~~~c-p~C~~ehl~~l~~~~~~f~--- 107 (203)
.+.+|..+ |++.+..... + +++.|.+.+ .|++.+|+ |.++-- +.. ...+.++.+.+.
T Consensus 462 ~~~~G~r~----~~~~v~~~~d---~-----~~~~l~~~~~~~g~~~l~~-f~~~~~~~~~----~~~l~~~~~~l~~~~ 524 (634)
T PRK08294 462 GFPIGKRF----HSAPVIRLAD---A-----KPVHLGHAATADGRWRIYA-FADAADPAGP----GSALDALCEFLAESP 524 (634)
T ss_pred CCCCceeC----CCCceeeccC---C-----CchhHhhhcccCCCEEEEE-EcCCCCcchh----HHHHHHHHHHHhhCc
Confidence 58899995 9999887532 2 566666545 57776665 444332 333 334444444442
Q ss_pred --------HcC------CcEEEEEecCC---------HHHHHHHHHHhCCCCce-EEEeeC--CchHHHHcCCccccccc
Q 028808 108 --------AKG------IDSVICVAVND---------PYVMNGWAEKLQAKDVI-EFYGDF--DGSFHKSLDLGKDLSAA 161 (203)
Q Consensus 108 --------~~g------v~~vi~IS~d~---------~~~~~~~~~~~~l~~~f-pllsD~--~~~v~~~yGv~~~~~~~ 161 (203)
..+ ++ ++.|.... |...+.|....++. +| .+++|. .+...+.||+..+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~---- 598 (634)
T PRK08294 525 DSPLRRFTPSGADIDAVID-VRAIFQQPHRELDLEDVPALLLPRKGRFGLT-DYEKVFCADLSGADIFDLRGIDRD---- 598 (634)
T ss_pred cchHhhcCCCCCCCCcEEE-EEEEecCCCCccchhhCcHhhCCcccccCcc-chhheecCCCchhhHHHhhCCCCC----
Confidence 111 33 55554431 22233444455542 13 345552 3456688887542
Q ss_pred cCCCCcceEEEEEe-CCEEEEEE
Q 028808 162 LLGPRSERWSAYVE-DGRIKALN 183 (203)
Q Consensus 162 g~~~~~~r~tfIId-dG~I~~~~ 183 (203)
.-+.+||. ||-|-++-
T Consensus 599 ------~g~~vvvRPD~~v~~~~ 615 (634)
T PRK08294 599 ------RGAVVVVRPDQYVANVL 615 (634)
T ss_pred ------ceeEEEECCCCceEEEe
Confidence 22467778 99887764
No 228
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.13 E-value=36 Score=24.88 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=30.2
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEE
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEF 140 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpl 140 (203)
-++..+..+..+++|+. +|+|+.+.+ ..+++++++.. .+++
T Consensus 56 t~e~i~~~~~a~~~g~~-iI~IT~~~~--l~~~~~~~~~~-~~~~ 96 (119)
T cd05017 56 TEETLSAVEQAKERGAK-IVAITSGGK--LLEMAREHGVP-VIII 96 (119)
T ss_pred CHHHHHHHHHHHHCCCE-EEEEeCCch--HHHHHHHcCCc-EEEC
Confidence 45677777888899998 999987653 67788877753 2444
No 229
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=49.59 E-value=89 Score=25.45 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=30.7
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll 141 (203)
.|...++.+.++++|+. +..+|.......+...+++++...|.++
T Consensus 97 ~pg~~~~L~~L~~~g~~-l~i~Tn~~~~~~~~~l~~~~l~~~f~~i 141 (229)
T PRK13226 97 FDGVEGMLQRLECAGCV-WGIVTNKPEYLARLILPQLGWEQRCAVL 141 (229)
T ss_pred CCCHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCchhcccEE
Confidence 46677777888889986 6666666666666777888874234443
No 230
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=49.42 E-value=25 Score=30.63 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=16.7
Q ss_pred CCCCCCCccchhhHHHhHHHHHHcCC
Q 028808 86 AYTGVCSNQHVPSYKNNIDKFKAKGI 111 (203)
Q Consensus 86 ~~cp~C~~ehl~~l~~~~~~f~~~gv 111 (203)
+|||.|- |-.-|..+.+.+.+.|.
T Consensus 2 ~~CpGCg--~~~i~~~~~~a~~~l~~ 25 (287)
T TIGR02177 2 DWCPGCG--DFGILSALQRALAELNL 25 (287)
T ss_pred CcCCCCC--ChHHHHHHHHHHHHhcC
Confidence 5999997 44666666666666544
No 231
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.95 E-value=30 Score=29.44 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=36.7
Q ss_pred HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808 101 NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS 147 (203)
Q Consensus 101 ~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~ 147 (203)
..+.++++.|+. ||-.|..+...+..+.++.+++ ..|+++.....
T Consensus 30 pv~~el~d~G~~-Vi~~SSKT~aE~~~l~~~l~v~-~~p~iaEnG~a 74 (274)
T COG3769 30 PVLLELKDAGVP-VILCSSKTRAEMLYLQKSLGVQ-GLPLIAENGAA 74 (274)
T ss_pred hHHHHHHHcCCe-EEEeccchHHHHHHHHHhcCCC-CCceeecCCce
Confidence 345677899999 9999999998899999999997 58888765443
No 232
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=48.79 E-value=76 Score=21.03 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=24.4
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH---HHHHHHHHHhCCC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP---YVMNGWAEKLQAK 135 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~---~~~~~~~~~~~l~ 135 (203)
..|..|| +|-+ +....+++...-+++-|-.|++ ....+|+++.|.+
T Consensus 4 ~rG~~CP------~Pvl-~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~ 52 (69)
T cd03420 4 ACGLQCP------GPIL-KLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNT 52 (69)
T ss_pred cCCCcCC------HHHH-HHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCE
Confidence 4555676 4533 2233444322112444444443 4688999999975
No 233
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=48.06 E-value=12 Score=28.39 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=32.4
Q ss_pred eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEec
Q 028808 66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAV 119 (203)
Q Consensus 66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~ 119 (203)
.+.+.+ -..+ ++|..|..-.||+|..- .+.+.++.+++-+.| +. ++-...
T Consensus 4 ~~~~G~-~~a~-~~v~~f~d~~Cp~C~~~-~~~~~~~~~~~i~~~~v~-~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGN-PDAP-ITVTEFFDFQCPHCAKF-HEELEKLLKKYIDPGKVK-FVFRPV 54 (162)
T ss_dssp SEEES--TTTS-EEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEES
T ss_pred CCeecC-CCCC-eEEEEEECCCCHhHHHH-HHHHhhhhhhccCCCceE-EEEEEc
Confidence 345555 2444 67788999999999987 588888888883333 44 555543
No 234
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=46.28 E-value=80 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=41.1
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH--HHHHHHHhCCCC-ceEEEeeC
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV--MNGWAEKLQAKD-VIEFYGDF 144 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~--~~~~~~~~~l~~-~fpllsD~ 144 (203)
..+++..++.-.-.- .- .|...+..++++++|.. +..+|..+... ..+..++++++. .|..+.-.
T Consensus 9 ~~~~~D~dG~l~~~~-~~-~pga~e~L~~L~~~G~~-~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s 76 (242)
T TIGR01459 9 DVFLLDLWGVIIDGN-HT-YPGAVQNLNKIIAQGKP-VYFVSNSPRNIFSLHKTLKSLGINADLPEMIISS 76 (242)
T ss_pred CEEEEecccccccCC-cc-CccHHHHHHHHHHCCCE-EEEEeCCCCChHHHHHHHHHCCCCccccceEEcc
Confidence 466777776654322 23 67788888899999988 87776644322 235678888763 34544433
No 235
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=45.61 E-value=44 Score=25.28 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=24.0
Q ss_pred eEEEEEeeCC--CCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 77 KVVIFGLPGA--YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 77 ~vVL~~f~~~--~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
..||.|+|.. ..+-+..++...|.+.+++|+.+.+. ++-+..+
T Consensus 22 ~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~-Fv~vd~~ 66 (130)
T cd02983 22 LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWG-WLWTEAG 66 (130)
T ss_pred eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEE-EEEEeCc
Confidence 5677777753 22334444455666677777665554 4444443
No 236
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=44.11 E-value=81 Score=23.03 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCC--------HHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVND--------PYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~--------~~~~~~~~~~~~l~ 135 (203)
.|...+..++++++|+. ++.+|-.. ....+++.+.+++.
T Consensus 27 ~~~v~~~l~~L~~~g~~-l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGYK-VVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 36677788889999998 88888766 55677888888885
No 237
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=43.80 E-value=38 Score=26.17 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.0
Q ss_pred HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 101 NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 101 ~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
++.+++++.|+. ++.||.+.....+.+++..+++
T Consensus 96 e~i~~~~~~~~~-v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIRELKDNGIK-VVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHTTSE-EEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCC
Confidence 555667788998 9999998778888898888885
No 238
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=8.8 Score=32.24 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
+++ .++..||+.||.+|. + |.+..+...++. ++++ .+-+..+
T Consensus 16 ~~~-~~~~~f~a~wa~~~~-q-~~~v~~~~~~~~-~~~~-~~k~~a~ 57 (227)
T KOG0911|consen 16 KGK-LLVLHFWAIWAVVQK-Q-MDQVFDHLAEYF-KNAQ-FLKLEAE 57 (227)
T ss_pred ccc-hhhhhhhhhhhhhhh-h-HHHHHHHHHHhh-hhhe-eeeehhh
Confidence 444 677789999999997 4 676666544444 4455 5554443
No 239
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=42.38 E-value=97 Score=22.73 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=20.1
Q ss_pred CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d 120 (203)
..++||+ |-.+|||.|.. +.++.. +.|+. -..+-.|
T Consensus 12 ~~~~VVi--fSKs~C~~c~~-----~k~ll~---~~~v~-~~vvELD 47 (104)
T KOG1752|consen 12 SENPVVI--FSKSSCPYCHR-----AKELLS---DLGVN-PKVVELD 47 (104)
T ss_pred hcCCEEE--EECCcCchHHH-----HHHHHH---hCCCC-CEEEEcc
Confidence 4444544 56699999953 333333 35565 4455444
No 240
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=42.22 E-value=41 Score=28.34 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=28.9
Q ss_pred eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHH
Q 028808 66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128 (203)
Q Consensus 66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~ 128 (203)
.-+..++|+|+++|| ||..... -..++...+-++..|.. ++-++++.-+..-++
T Consensus 114 ~~a~~~lf~g~~~il-------~p~~~~~-~~~~~~~~~l~~~~Ga~-~~~~~~eeHD~~~A~ 167 (258)
T PF02153_consen 114 EAADADLFEGRNWIL-------CPGEDTD-PEALELVEELWEALGAR-VVEMDAEEHDRIMAY 167 (258)
T ss_dssp GG-TTTTTTTSEEEE-------EECTTS--HHHHHHHHHHHHHCT-E-EEE--HHHHHHHHHH
T ss_pred hhhcccccCCCeEEE-------eCCCCCh-HHHHHHHHHHHHHCCCE-EEEcCHHHHHHHHHH
Confidence 445667789986555 3444333 23455555556788988 888866654433333
No 241
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=41.74 E-value=22 Score=23.00 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=24.5
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
|...+||.|.+- .-. ++++|++ .--+..+.......|.+.+... .+|++-|.+
T Consensus 4 y~~~~~~~~~~v-~~~-------l~~~gi~-~~~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~ 56 (73)
T cd03059 4 YSGPDDVYSHRV-RIV-------LAEKGVS-VEIIDVDPDNPPEDLAELNPYG-TVPTLVDRD 56 (73)
T ss_pred EECCCChhHHHH-HHH-------HHHcCCc-cEEEEcCCCCCCHHHHhhCCCC-CCCEEEECC
Confidence 556688888653 121 3455665 3333333211112333333332 467666543
No 242
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=41.69 E-value=12 Score=25.76 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=35.1
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
|++|-...|+.|..- -..+.+.. .+.++. +-.|..++. .+|.++++.. .|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a-~~~L~~~~---~~~~~~-l~~vDI~~d---~~l~~~Y~~~--IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA-KEILEEVA---AEFPFE-LEEVDIDED---PELFEKYGYR--IPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHH-HHHHHHCC---TTSTCE-EEEEETTTT---HHHHHHSCTS--TSEEEETT
T ss_pred EEEEcCCCCChHHHH-HHHHHHHH---hhcCce-EEEEECCCC---HHHHHHhcCC--CCEEEEcC
Confidence 456888889888643 22333221 245677 888888753 4488899875 78777554
No 243
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=41.41 E-value=1.7e+02 Score=27.24 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808 34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS 113 (203)
Q Consensus 34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~ 113 (203)
...+|+. +|+..+.+..| ...-+.++..+++++| .|-.. |.. + +.. ...+.++..|+.
T Consensus 410 ~~~~G~~----~p~~~~~~~~~---------~~~~~d~~~~~~~~ll-~~~~~--~~~--~-~~~--~~~~~~~~~~~~- 467 (538)
T PRK06183 410 HSPVGTL----FPQPRVELGGG---------DRGLLDDVLGPGFAVL-GWGCD--PLA--G-LSD--EQRARWRALGAR- 467 (538)
T ss_pred CCCcccC----cCCCeeEcCCC---------CcccchhccCCceEEE-EecCC--chh--c-CCH--HHHHHHHHcCCe-
Confidence 3457888 59988865432 2334555433445554 44111 211 1 221 112335667887
Q ss_pred EEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808 114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN 183 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~ 183 (203)
++.+...... .+ . ..+.+.|.++.+.+.|+... ...+||. |+-|-...
T Consensus 468 ~~~~~~~~~~---~~------~-~~~~~~d~~g~~~~~~~~~~------------~~~~lvRPD~~v~~~~ 516 (538)
T PRK06183 468 FVQVVPAVQA---HT------A-QDDHDSDVDGALRAWLARHG------------ASAVLLRPDRYVAAAA 516 (538)
T ss_pred EEEEeccccc---cc------C-CCceeecCCchHHHHHHhCC------------CEEEEECCCEEEEEee
Confidence 7777654321 11 1 36678899999999998753 1268888 99887653
No 244
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=40.90 E-value=29 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=18.0
Q ss_pred CCeEEEEEeeCCCCCCCCccchhhHHH
Q 028808 75 GKKVVIFGLPGAYTGVCSNQHVPSYKN 101 (203)
Q Consensus 75 gk~vVL~~f~~~~cp~C~~ehl~~l~~ 101 (203)
++ ..|+.|--..||+|.+- .+.+.+
T Consensus 77 ~~-~~i~~f~D~~Cp~C~~~-~~~l~~ 101 (197)
T cd03020 77 GK-RVVYVFTDPDCPYCRKL-EKELKP 101 (197)
T ss_pred CC-EEEEEEECCCCccHHHH-HHHHhh
Confidence 44 56666888999999887 466554
No 245
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=39.49 E-value=1e+02 Score=20.32 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=24.4
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH---HHHHHHHHHhCCC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP---YVMNGWAEKLQAK 135 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~---~~~~~~~~~~~l~ 135 (203)
..|--|| +|-+ +....+++...-+++-|-.|++ ....+|+++.|.+
T Consensus 4 ~~G~~CP------~P~i-~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~ 52 (69)
T cd03423 4 TRGLRCP------EPVM-MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHE 52 (69)
T ss_pred ccCCcCC------HHHH-HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCE
Confidence 3455566 4533 3334444332112444444443 4688999999875
No 246
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=38.81 E-value=97 Score=25.56 Aligned_cols=39 Identities=3% Similarity=0.031 Sum_probs=32.3
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|.+.+..++++++|+. ++..|.-+....++..++.++.
T Consensus 23 ~~~~~~~i~~~~~~gi~-fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 23 LLRLNALLEDHRGEDSL-LVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHhhccCce-EEEEcCCCHHHHHHHHhcCCCC
Confidence 68888888999999987 8888888888888888877764
No 247
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=38.68 E-value=51 Score=24.51 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=32.3
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++..+++++|+. ++.+|..+...+....+.+++.
T Consensus 79 ~~~~~~~L~~l~~~~~~-~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIP-LVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp STTHHHHHHHHHHTTSE-EEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhhhcccccce-eEEeecCCcccccccccccccc
Confidence 46777888888889998 9999988887788888888864
No 248
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=38.58 E-value=21 Score=23.88 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=21.8
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC 116 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~ 116 (203)
..|..-.||.|..- -+.+.+..... ..+++ +.-
T Consensus 2 ~~f~d~~Cp~C~~~-~~~l~~~~~~~-~~~~~-~~~ 34 (98)
T cd02972 2 VEFFDPLCPYCYLF-EPELEKLLYAD-DGGVR-VVY 34 (98)
T ss_pred eEEECCCCHhHHhh-hHHHHHHHhhc-CCcEE-EEE
Confidence 45778899999987 57777765322 33455 443
No 249
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=38.38 E-value=1e+02 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=35.3
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCH--------H---HHHHHHHHhCCCCceEEEeeCCchH
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDP--------Y---VMNGWAEKLQAKDVIEFYGDFDGSF 148 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~--------~---~~~~~~~~~~l~~~fpllsD~~~~v 148 (203)
...+.+...+++++|+. |+.|.+-++ . ...+.++++|+ .|.++|++.++
T Consensus 250 r~~~l~~L~~~~~~G~~-Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf---~pYVsd~~l~l 309 (315)
T TIGR01370 250 RQRRLLALYRLWQQGKF-VLTVDYVDDGTKTNENPARMKDAAEKARAAGL---IPYVAESDLEL 309 (315)
T ss_pred HHHHHHHHHHHHHCCCc-EEEEEecCCcccchhhHHHHHHHHHHHHHcCC---eeeecCchhcc
Confidence 45566667778888999 999976543 1 24466777887 89999986654
No 250
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=38.34 E-value=33 Score=29.75 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=18.1
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
+|-.|||.|- |-.-|..+...+.++|
T Consensus 6 ~~~~~CpGCg--~~~i~~~~~~a~~~l~ 31 (280)
T PRK11869 6 YDIAWCPGCG--NFGIRNALMKALSELN 31 (280)
T ss_pred CCCCCCcCCC--CHHHHHHHHHHHHHcC
Confidence 5778999998 4455666666665544
No 251
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=37.84 E-value=38 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCCCCCCccchhhHHHhHHHH
Q 028808 77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKF 106 (203)
Q Consensus 77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f 106 (203)
++.|+.|.--.||.|..- -+.+.++..++
T Consensus 16 ~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~~ 44 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNF-EPILEAWVKKL 44 (178)
T ss_pred CcEEEEEECCCCcchhhh-hHHHHHHHHhC
Confidence 366777888999999987 47787777766
No 252
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=37.71 E-value=42 Score=21.50 Aligned_cols=13 Identities=0% Similarity=-0.355 Sum_probs=9.3
Q ss_pred EeeCCCCCCCCcc
Q 028808 82 GLPGAYTGVCSNQ 94 (203)
Q Consensus 82 ~f~~~~cp~C~~e 94 (203)
.|...+||.|.+-
T Consensus 3 Ly~~~~s~~~~~~ 15 (74)
T cd03051 3 LYDSPTAPNPRRV 15 (74)
T ss_pred EEeCCCCcchHHH
Confidence 3666789998754
No 253
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=36.94 E-value=70 Score=31.47 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=34.0
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
-++..+..++++++|++ ++.+|-|+....++++++.|+.
T Consensus 570 r~~a~~~i~~L~~~gi~-~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 570 RADARQAISELKALGIK-GVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred chhHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCCC
Confidence 35677788889999998 9999999999999999999985
No 254
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=36.72 E-value=95 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.4
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
+..+.++.++++++|.. ++.+..+......++++++++. -++.+.
T Consensus 52 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~---~V~~~~ 96 (165)
T PF00875_consen 52 LESLADLQESLRKLGIP-LLVLRGDPEEVLPELAKEYGAT---AVYFNE 96 (165)
T ss_dssp HHHHHHHHHHHHHTTS--EEEEESSHHHHHHHHHHHHTES---EEEEE-
T ss_pred HHHHHHHHHHHHhcCcc-eEEEecchHHHHHHHHHhcCcC---eeEecc
Confidence 34677788889999999 9999888788899999999984 344444
No 255
>PRK10200 putative racemase; Provisional
Probab=36.01 E-value=84 Score=26.11 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls 142 (203)
.+.|.+..+.+++.|++ .++|.+|+......-.++. ++ +|+++
T Consensus 61 ~~~l~~~~~~L~~~g~~-~iviaCNTah~~~~~l~~~-~~--iPii~ 103 (230)
T PRK10200 61 GDILAEAALGLQRAGAE-GIVLCTNTMHKVADAIESR-CS--LPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCchHHHHHHHHHHh-CC--CCEee
Confidence 68889999999999999 9999999974332222221 33 66766
No 256
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=35.95 E-value=93 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=30.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.+...+..++++++|.. ++.+|......++.+++..++.
T Consensus 89 ~~~~~~~l~~l~~~g~~-v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHT-IVLVSASLTILVKPLARILGID 127 (202)
T ss_pred cHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHcCCc
Confidence 36667777788889998 8888876667788899988875
No 257
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=35.54 E-value=59 Score=28.15 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=15.9
Q ss_pred eCCCCCCCCccchhhHHHhHHHHHHc
Q 028808 84 PGAYTGVCSNQHVPSYKNNIDKFKAK 109 (203)
Q Consensus 84 ~~~~cp~C~~ehl~~l~~~~~~f~~~ 109 (203)
+-.|||.|- |-.-+..+.+-+.+.
T Consensus 6 ~~~~CpGCg--~~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCG--NYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCC--ChHHHHHHHHHHHHh
Confidence 457999998 445556666556554
No 258
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=35.42 E-value=54 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=11.0
Q ss_pred eCCCCCCCCccchhhHHHhH
Q 028808 84 PGAYTGVCSNQHVPSYKNNI 103 (203)
Q Consensus 84 ~~~~cp~C~~ehl~~l~~~~ 103 (203)
.+.+||.|..- ...+++..
T Consensus 6 ~~~~C~~C~~~-~~~~~~~~ 24 (76)
T PF13192_consen 6 FSPGCPYCPEL-VQLLKEAA 24 (76)
T ss_dssp ECSSCTTHHHH-HHHHHHHH
T ss_pred eCCCCCCcHHH-HHHHHHHH
Confidence 36679999743 34444443
No 259
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=35.40 E-value=32 Score=21.12 Aligned_cols=55 Identities=5% Similarity=-0.148 Sum_probs=25.1
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG 146 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~ 146 (203)
|...+||.|.+- ...+.. ++..++ ++-++.++.... .+.+..+.. .+|++.+.+.
T Consensus 4 y~~~~~~~~~~~-~~~l~~-----~~i~~~-~~~~~~~~~~~~-~~~~~~~~~-~~P~l~~~~~ 58 (71)
T cd00570 4 YYFPGSPRSLRV-RLALEE-----KGLPYE-LVPVDLGEGEQE-EFLALNPLG-KVPVLEDGGL 58 (71)
T ss_pred EeCCCCccHHHH-HHHHHH-----cCCCcE-EEEeCCCCCCCH-HHHhcCCCC-CCCEEEECCE
Confidence 455679999643 222221 122233 444544332111 333433333 5777776643
No 260
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=1.6e+02 Score=20.75 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=9.4
Q ss_pred eeCCCCCCCCcc
Q 028808 83 LPGAYTGVCSNQ 94 (203)
Q Consensus 83 f~~~~cp~C~~e 94 (203)
|.+..||-|..-
T Consensus 7 fgsn~Cpdca~a 18 (85)
T COG4545 7 FGSNLCPDCAPA 18 (85)
T ss_pred eccccCcchHHH
Confidence 678999999643
No 261
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=35.25 E-value=65 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=30.0
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
+.+|....|.=|... .+.++.+|++ |=.+..|+-. +.+++++++
T Consensus 28 ~~vyksPnCGCC~~w--------~~~mk~~Gf~-Vk~~~~~d~~---alK~~~gIp 71 (149)
T COG3019 28 MVVYKSPNCGCCDEW--------AQHMKANGFE-VKVVETDDFL---ALKRRLGIP 71 (149)
T ss_pred EEEEeCCCCccHHHH--------HHHHHhCCcE-EEEeecCcHH---HHHHhcCCC
Confidence 446888899877644 2344578998 8888888754 445557765
No 262
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=35.14 E-value=37 Score=22.69 Aligned_cols=27 Identities=15% Similarity=0.509 Sum_probs=18.5
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi 115 (203)
|.-|+-||-|.++ +-..-+.+.+++ ++
T Consensus 7 FIAGA~CP~C~~~------Dtl~mW~En~ve-~v 33 (66)
T COG3529 7 FIAGAVCPACQAQ------DTLAMWRENNVE-IV 33 (66)
T ss_pred hhccCCCcccchh------hHHHHHHhcCCc-eE
Confidence 4568899999876 233445677888 44
No 263
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=34.91 E-value=88 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++.++++++|+. +..+|......++.+.++.++.
T Consensus 87 ~~g~~~~L~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 87 FPGVEATLGALRAKGLR-LGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCcH
Confidence 46677777888889988 8888877777888899998874
No 264
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=34.21 E-value=85 Score=23.87 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=28.8
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|.+.+..+++++.|.. ++.+|.......+.+.+.+++.
T Consensus 76 ~g~~~~l~~l~~~g~~-~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 76 PGARELISWLKERGID-TVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCc
Confidence 5566777778888887 8888777767777888888774
No 265
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=33.14 E-value=1e+02 Score=26.06 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=25.9
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQA 134 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l 134 (203)
..|.+...++.+.|+. |++|.+|-...-..-..++|+
T Consensus 196 ~~l~~iI~~l~~~g~~-VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYN-VVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred HHHHHHHHHHHHCCCE-EEEEECCCCcchHHHHHHcCC
Confidence 4467778889999998 999988865433444445555
No 266
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=32.80 E-value=31 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=16.5
Q ss_pred EEEEEeCCEEEEEEeecCCC
Q 028808 170 WSAYVEDGRIKALNVEEAPS 189 (203)
Q Consensus 170 ~tfIIddG~I~~~~~~~~~~ 189 (203)
.+||+|.|..+|+|+|.+-.
T Consensus 27 d~fild~~~~iyvW~G~~as 46 (90)
T smart00262 27 DCYILDTGSEIYVWVGKKSS 46 (90)
T ss_pred CEEEEECCCEEEEEECCCCC
Confidence 48999988889999997643
No 267
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.35 E-value=92 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=22.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHH
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNG 127 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~ 127 (203)
-+++.+..+..+++|+. +|+|+.+......+
T Consensus 60 t~~~~~~~~~a~~~g~~-vi~iT~~~~s~la~ 90 (128)
T cd05014 60 TDELLNLLPHLKRRGAP-IIAITGNPNSTLAK 90 (128)
T ss_pred CHHHHHHHHHHHHCCCe-EEEEeCCCCCchhh
Confidence 46677778888999999 99998865433333
No 268
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=32.30 E-value=14 Score=24.50 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=15.9
Q ss_pred EEEEeCCEEEEEEeecCC
Q 028808 171 SAYVEDGRIKALNVEEAP 188 (203)
Q Consensus 171 tfIIddG~I~~~~~~~~~ 188 (203)
.||+|.|.-+|+|+|.+.
T Consensus 20 ~yIld~~~~i~vW~G~~~ 37 (76)
T PF00626_consen 20 CYILDCGYEIFVWVGKKS 37 (76)
T ss_dssp EEEEEESSEEEEEEHTTS
T ss_pred EEEEEeCCCcEEEEeccC
Confidence 899998889999999763
No 269
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=32.24 E-value=31 Score=20.52 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcc
Q 028808 74 KGKKVVIFGLPGAYTGVCSNQ 94 (203)
Q Consensus 74 ~gk~vVL~~f~~~~cp~C~~e 94 (203)
+|+.+++-++|+-.|+.|-.+
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred CCEEEEEeCCCccccccCCCE
Confidence 666556669999999999865
No 270
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=32.23 E-value=1.6e+02 Score=24.88 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=39.5
Q ss_pred CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe
Q 028808 46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA 118 (203)
Q Consensus 46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS 118 (203)
|.|..++..| +. .++-+..+ .|++|+++ .|-...+=-.+ +........-++..|++.+++.+
T Consensus 29 p~fp~~tv~g----H~---g~l~~G~l-~g~~V~~l--~Gr~H~yeg~~-~~~v~~~i~al~~lGv~~ii~tn 90 (237)
T TIGR01698 29 PGFPAPTVSG----HA---GELIRVRI-GDGPVLVL--GGRTHAYEGGD-ARAVVHPVRTARATGAETLILTN 90 (237)
T ss_pred CCCCCCcccC----cc---ceEEEEEE-CCEEEEEE--cCCCcccCCCc-HHHhHHHHHHHHHcCCCEEEEEc
Confidence 8888877654 22 25677774 88865544 35554433333 44446667778999999777765
No 271
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=46 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred ceeeecccccCCCeEEEEEeeCCCCCCCCc
Q 028808 64 FATTPIKDIFKGKKVVIFGLPGAYTGVCSN 93 (203)
Q Consensus 64 ~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ 93 (203)
.-.++|.|+..|. +|- -||.|+-
T Consensus 30 RFeIsLeDl~~GE-~VA------rCPSCSL 52 (67)
T COG5216 30 RFEISLEDLRNGE-VVA------RCPSCSL 52 (67)
T ss_pred EeEEEHHHhhCCc-eEE------EcCCceE
Confidence 3579999986676 332 4898864
No 272
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=31.90 E-value=97 Score=25.26 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=26.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
|+++++..+++++.|++ +|-+.++. +-.++++.+.. +++..|.
T Consensus 1 ~~~~~~~l~~l~~~g~d---gi~v~~~g-~~~~~k~~~~~--~~i~~~~ 43 (233)
T PF01136_consen 1 LEELEKYLDKLKELGVD---GILVSNPG-LLELLKELGPD--LKIIADY 43 (233)
T ss_pred ChHHHHHHHHHHhCCCC---EEEEcCHH-HHHHHHHhCCC--CcEEEec
Confidence 45677777778888877 55555554 34555666543 6666665
No 273
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=31.80 E-value=1.1e+02 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=27.8
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCH---------------HHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDP---------------YVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~---------------~~~~~~~~~~~l~ 135 (203)
+...+...+++++|.. |+.+|.-+. ....+|.++++++
T Consensus 27 ~~~ie~L~~l~~~G~~-IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 27 LAVIEKLRHYKALGFE-IVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 5566667777889998 888875432 1557899998887
No 274
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=31.67 E-value=35 Score=25.57 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=44.5
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE-EEEEecCC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS-VICVAVND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~-vi~IS~d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+..|....|..|.+- ...|++.|++. ++-+..+. .+...+|.++.+.. +.-+....+...+++|+.
T Consensus 3 itiy~~p~C~t~rka--------~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~--~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 3 ITIYGNPNCSTCRKA--------LAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDG--VEELINTRGTTYRELNLD 71 (117)
T ss_pred EEEEeCCCChHHHHH--------HHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCcc--HHHHHHhccchHHHcCCc
Confidence 456777788877654 34566777772 23344343 46789999999975 656667788888888844
No 275
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.55 E-value=1.1e+02 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=23.1
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHH
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNG 127 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~ 127 (203)
-++..+..+..+++|+. +|+|+.+......+
T Consensus 59 t~e~~~~~~~a~~~g~~-vi~iT~~~~s~la~ 89 (126)
T cd05008 59 TADTLAALRLAKEKGAK-TVAITNVVGSTLAR 89 (126)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEECCCCChHHH
Confidence 46688888889999998 99998765433333
No 276
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.97 E-value=1.6e+02 Score=19.44 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=25.4
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH---HHHHHHHHHhCCC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP---YVMNGWAEKLQAK 135 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~---~~~~~~~~~~~l~ 135 (203)
..|.-|| +|-+ +....+++...-+++.|-.|++ ....+|+++.|.+
T Consensus 4 ~rG~~CP------~Pvi-~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~ 52 (69)
T cd03422 4 LRGEPCP------YPAI-ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYK 52 (69)
T ss_pred cCCCcCC------HHHH-HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCE
Confidence 3455666 4533 3334454432112555555554 4688999999875
No 277
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=30.71 E-value=1.5e+02 Score=23.46 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=34.2
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll 141 (203)
.|...++.+.++++|+. +..+|.........+.+.+++...|..+
T Consensus 95 ~~g~~~~l~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~~~f~~~ 139 (226)
T PRK13222 95 YPGVKETLAALKAAGYP-LAVVTNKPTPFVAPLLEALGIADYFSVV 139 (226)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCCccCccEE
Confidence 57788888889999988 8888877767777888888874234433
No 278
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.57 E-value=1.7e+02 Score=26.25 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.9
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHh-CCCCceEEEeeCCc
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL-QAKDVIEFYGDFDG 146 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~-~l~~~fpllsD~~~ 146 (203)
..-.+...++.+.|++ ++=+++.+.+..+++.+=. +. +.|++.|-+-
T Consensus 34 ~atv~QI~~L~~aGce-iVRvavp~~~~A~al~~I~~~~--~iPlVADIHF 81 (346)
T TIGR00612 34 DSTVAQIRALEEAGCD-IVRVTVPDRESAAAFEAIKEGT--NVPLVADIHF 81 (346)
T ss_pred HHHHHHHHHHHHcCCC-EEEEcCCCHHHHHhHHHHHhCC--CCCEEEeeCC
Confidence 3344456677889999 9999999987766654433 34 4999999744
No 279
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=30.45 E-value=21 Score=26.08 Aligned_cols=27 Identities=4% Similarity=0.185 Sum_probs=18.1
Q ss_pred EEeeCCCCCCCCccchhhH-HHhHHHHH
Q 028808 81 FGLPGAYTGVCSNQHVPSY-KNNIDKFK 107 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l-~~~~~~f~ 107 (203)
+||-..+|-+|..+|+.+| .++.++++
T Consensus 67 lFYtkrFC~pC~~~~~~~FP~eiq~~l~ 94 (97)
T PF10170_consen 67 LFYTKRFCLPCVKRNLKAFPPEIQKDLE 94 (97)
T ss_pred EEeeCceeHHHHHHHHHHCCHHHHHHHH
Confidence 5788889999988765555 33444444
No 280
>PRK10026 arsenate reductase; Provisional
Probab=29.86 E-value=56 Score=25.35 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=40.2
Q ss_pred EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--CC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--ND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+.+|.-..|..|++. +. .+++.|++ +-.+.. +. ....+.|.++.+.. ..-+....+...+++++.
T Consensus 4 i~iY~~p~Cst~RKA-~~-------wL~~~gi~-~~~~d~~~~ppt~~eL~~~l~~~g~~--~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 4 ITIYHNPACGTSRNT-LE-------MIRNSGTE-PTIIHYLETPPTRDELVKLIADMGIS--VRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEEeCCCCHHHHHH-HH-------HHHHCCCC-cEEEeeeCCCcCHHHHHHHHHhCCCC--HHHHHHcCCchHHHcCCC
Confidence 345777889999876 33 34456776 555543 33 36788999988863 222334455666666654
No 281
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=29.85 E-value=1.6e+02 Score=23.90 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=34.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCce
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVI 138 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~f 138 (203)
.|...+..++++++|+. +..+|.+.........+.+++...|
T Consensus 91 ~~gv~e~L~~L~~~g~~-l~i~T~k~~~~~~~~l~~~gl~~~F 132 (220)
T COG0546 91 FPGVKELLAALKSAGYK-LGIVTNKPERELDILLKALGLADYF 132 (220)
T ss_pred CCCHHHHHHHHHhCCCe-EEEEeCCcHHHHHHHHHHhCCcccc
Confidence 67788888999999998 8888888878888999999985334
No 282
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=29.76 E-value=1e+02 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=31.6
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|.+.++.++++++|.. ++.+|.........+.++.++.
T Consensus 87 ~~g~~~~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 87 TEGAEELVKTLKEKGYK-VAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCCHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCC
Confidence 46677778888889998 8888887777788888888875
No 283
>PHA00649 hypothetical protein
Probab=29.73 E-value=30 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.3
Q ss_pred EEEEecCCHHHHHHHHHHhC
Q 028808 114 VICVAVNDPYVMNGWAEKLQ 133 (203)
Q Consensus 114 vi~IS~d~~~~~~~~~~~~~ 133 (203)
++||..|+|+..++|.+++-
T Consensus 25 ~LGVD~~~P~~VEEFr~D~~ 44 (83)
T PHA00649 25 ILGVDVDVPEQVEEFREDLR 44 (83)
T ss_pred HHcCCCCCHHHHHHHHHHHH
Confidence 55566999999888887753
No 284
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=29.71 E-value=1.7e+02 Score=22.73 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=36.6
Q ss_pred eEEEEEeeCCCCCC-CCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCC
Q 028808 77 KVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAK 135 (203)
Q Consensus 77 ~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~ 135 (203)
+.|++.+-++.... ...- .|.+.+..++++++|+. ++.+|..+ ....+.+.+..++.
T Consensus 26 ~~vv~D~Dgtl~~~~~~~~-~pgv~e~L~~Lk~~g~~-l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 26 KGVVLDKDNTLVYPDHNEA-YPALRDWIEELKAAGRK-LLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred CEEEEecCCccccCCCCCc-ChhHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHcCCE
Confidence 45666654443322 1122 47778888999999988 88888776 34556666777763
No 285
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=29.70 E-value=2.1e+02 Score=20.47 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=33.3
Q ss_pred HHHHHHcCCcEEEEEecCCHH----HHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 103 IDKFKAKGIDSVICVAVNDPY----VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 103 ~~~f~~~gv~~vi~IS~d~~~----~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
...++...+. +|.|+.|-++ ....+++.+++| +-.+.....+++++.|..
T Consensus 25 ~kai~~gkak-lViiA~D~~~~~~~~i~~~c~~~~Ip--~~~~~~tk~eLG~a~Gk~ 78 (99)
T PRK01018 25 IKAIKLGKAK-LVIVASNCPKDIKEDIEYYAKLSGIP--VYEYEGSSVELGTLCGKP 78 (99)
T ss_pred HHHHHcCCce-EEEEeCCCCHHHHHHHHHHHHHcCCC--EEEECCCHHHHHHHhCCC
Confidence 3444555566 8889888654 345567777776 545545678899988864
No 286
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=29.56 E-value=1.2e+02 Score=23.53 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=31.6
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...+..+.++++|+. ++.+|.......+.+.+.+++.
T Consensus 82 ~~g~~e~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLK-TAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred CccHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHhCCC
Confidence 36677788888999998 9889887777788888888874
No 287
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.11 E-value=1.2e+02 Score=27.33 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.5
Q ss_pred HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhC-CCCceEEEeeCCc
Q 028808 101 NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQ-AKDVIEFYGDFDG 146 (203)
Q Consensus 101 ~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~-l~~~fpllsD~~~ 146 (203)
+...++.+.|++ |+=|++++.+...++.+=.. + +.|++.|..-
T Consensus 40 ~QI~~L~~aG~d-IVRvtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf 83 (361)
T COG0821 40 AQIKALERAGCD-IVRVTVPDMEAAEALKEIKQRL--NVPLVADIHF 83 (361)
T ss_pred HHHHHHHHcCCC-EEEEecCCHHHHHHHHHHHHhC--CCCEEEEeec
Confidence 345567788999 99999999887777654332 3 4899999743
No 288
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=29.10 E-value=1.2e+02 Score=23.85 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...+..++++++|+. +..+|..+...++...+..++.
T Consensus 94 ~~~~~~~L~~L~~~g~~-~~i~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 94 HPDVPAGLRALKERGYR-LAILSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHCCCh
Confidence 46777788889999998 8888877777777888888874
No 289
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=28.98 E-value=18 Score=30.76 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=29.6
Q ss_pred ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112 (203)
Q Consensus 68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~ 112 (203)
++.+++.|.| ++-|.++|||-|..- .+.+...+.-=.+.|++
T Consensus 33 nw~~~l~gew--mi~~~ap~~psc~~~-~~~~~~~a~~s~dL~v~ 74 (248)
T KOG0913|consen 33 NWKELLTGEW--MIEFGAPWCPSCSDL-IPHLENFATVSLDLGVK 74 (248)
T ss_pred chhhhhchHH--HHHhcCCCCccccch-HHHHhccCCccCCCcee
Confidence 4556667775 345789999999987 78887765544455555
No 290
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=26 Score=27.07 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=11.6
Q ss_pred ccCCCceEEecccc
Q 028808 42 VSAAQDVSLQKART 55 (203)
Q Consensus 42 ~~~APdf~l~~~~g 55 (203)
|-+||++.|+.++|
T Consensus 91 p~tapeialpeldg 104 (167)
T KOG3357|consen 91 PTTAPEIALPELDG 104 (167)
T ss_pred CCCCccccccccCc
Confidence 44589999999986
No 291
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=28.62 E-value=80 Score=27.35 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=15.5
Q ss_pred CCCCCCCccchhhHHHhHHHHHHcC
Q 028808 86 AYTGVCSNQHVPSYKNNIDKFKAKG 110 (203)
Q Consensus 86 ~~cp~C~~ehl~~l~~~~~~f~~~g 110 (203)
.|||.|-.. .-++.+.+-+.++|
T Consensus 18 ~~CpGCg~~--~il~~l~~al~~l~ 40 (286)
T PRK11867 18 RWCPGCGDG--SILAALQRALAELG 40 (286)
T ss_pred CcCCCCCCH--HHHHHHHHHHHHhC
Confidence 499999843 56666666665543
No 292
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=28.06 E-value=1.1e+02 Score=24.25 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=30.8
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...+..++++++|+. +..+|..+...+....++.++.
T Consensus 96 ~~g~~~~L~~L~~~g~~-~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 96 YPGVRDTLMELRESGYR-LGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHhCChH
Confidence 46778888889999987 8888877766677778888874
No 293
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=27.89 E-value=1.5e+02 Score=26.06 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=35.4
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS 147 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~ 147 (203)
|...+..++++++|+. +..+|..+........++.++...|..+.-.+..
T Consensus 151 p~V~EtL~eLkekGik-LaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i 200 (303)
T PHA03398 151 PFVYDSLDELKERGCV-LVLWSYGNREHVVHSLKETKLEGYFDIIICGGRK 200 (303)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHcCCCccccEEEECCCc
Confidence 7788889999999986 6666656666778889999986345544444333
No 294
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=27.63 E-value=48 Score=21.49 Aligned_cols=55 Identities=11% Similarity=-0.045 Sum_probs=25.9
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcE-EEEEecCCHHH-HHHHHHHhCCCCceEEEeeCC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS-VICVAVNDPYV-MNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~-vi~IS~d~~~~-~~~~~~~~~l~~~fpllsD~~ 145 (203)
.|...+||.|.+- .-. ++++|++. ++-+....... ...|.+.+... .+|++.|.+
T Consensus 3 Ly~~~~~~~~~~v-~~~-------l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~ 59 (74)
T cd03045 3 LYYLPGSPPCRAV-LLT-------AKALGLELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVDNG 59 (74)
T ss_pred EEeCCCCCcHHHH-HHH-------HHHcCCCCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEECC
Confidence 3556688888643 111 22344441 44444322221 23444443332 578887654
No 295
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=27.50 E-value=1.1e+02 Score=19.75 Aligned_cols=51 Identities=12% Similarity=-0.047 Sum_probs=24.1
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
|...+||.|.+- .- -+..+|+. .--+..+... .....+..+.. ..|++-|.
T Consensus 4 y~~~~~p~~~rv-r~-------~L~~~gl~-~~~~~~~~~~-~~~~~~~~~~~-~vP~L~~~ 54 (71)
T cd03037 4 YIYEHCPFCVKA-RM-------IAGLKNIP-VEQIILQNDD-EATPIRMIGAK-QVPILEKD 54 (71)
T ss_pred EecCCCcHhHHH-HH-------HHHHcCCC-eEEEECCCCc-hHHHHHhcCCC-ccCEEEeC
Confidence 456789999643 11 23345665 3333333211 12223333332 57888765
No 296
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=27.27 E-value=89 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=17.5
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAK 109 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~ 109 (203)
.+|-.|||.|... -..+...+.+.+.
T Consensus 13 ~~~~~~CpGCg~~--i~~~~v~~al~e~ 38 (277)
T PRK09628 13 KMPTLWCWGCGDG--VILKSIIRAIDKL 38 (277)
T ss_pred CCCCCcCCCCCCc--hHHHHHHHHHHHh
Confidence 4688899999742 3455566666654
No 297
>PLN02954 phosphoserine phosphatase
Probab=26.90 E-value=1.3e+02 Score=24.01 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=31.8
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|.+.++.+.++++|.. +..+|.......+...+.++++
T Consensus 86 ~pg~~e~l~~l~~~g~~-~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGTD-VYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHhCCC
Confidence 46777888888899998 8888887777788888888874
No 298
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=26.55 E-value=2.2e+02 Score=22.52 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=34.4
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll 141 (203)
.|...++.+.++++|+. +..+|......+....+..++...|..+
T Consensus 84 ~~g~~~~l~~L~~~g~~-~~i~S~~~~~~~~~~l~~~gl~~~f~~i 128 (214)
T PRK13288 84 YETVYETLKTLKKQGYK-LGIVTTKMRDTVEMGLKLTGLDEFFDVV 128 (214)
T ss_pred CcCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCChhceeEE
Confidence 57888888999999987 8878887777788888888875234333
No 299
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.08 E-value=2.2e+02 Score=26.46 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=30.0
Q ss_pred hHHHHHHcCCcEEEEEecCC----H-HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 102 NIDKFKAKGIDSVICVAVND----P-YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 102 ~~~~f~~~gv~~vi~IS~d~----~-~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
++-.|+.+|.. +.-|+.|+ . .+++.++.+-++| -|--+.+.+......-|+.
T Consensus 121 lA~y~kkkG~K-~~LvcaDTFRagAfDQLkqnA~k~~iP-~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 121 LAYYYKKKGYK-VALVCADTFRAGAFDQLKQNATKARVP-FYGSYTEADPVKIASEGVD 177 (483)
T ss_pred HHHHHHhcCCc-eeEEeecccccchHHHHHHHhHhhCCe-eEecccccchHHHHHHHHH
Confidence 34456678887 77777765 1 3567777777776 2333344444444444443
No 300
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.99 E-value=1.9e+02 Score=18.73 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=27.7
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH--HHHHHHHHHhCCCCceEEEee
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP--YVMNGWAEKLQAKDVIEFYGD 143 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~--~~~~~~~~~~~l~~~fpllsD 143 (203)
+...|.-||... -.+.+..++++ .|-. +..++.|.. ....+|++++|.. +--+.+
T Consensus 3 lD~rg~~CP~Pl----l~~~~~l~~l~-~G~~-l~v~~d~~~~~~di~~~~~~~g~~--~~~~~~ 59 (70)
T PF01206_consen 3 LDLRGLSCPMPL----LKAKKALKELP-PGEV-LEVLVDDPAAVEDIPRWCEENGYE--VVEVEE 59 (70)
T ss_dssp EECSS-STTHHH----HHHHHHHHTSG-TT-E-EEEEESSTTHHHHHHHHHHHHTEE--EEEEEE
T ss_pred EeCCCCCCCHHH----HHHHHHHHhcC-CCCE-EEEEECCccHHHHHHHHHHHCCCE--EEEEEE
Confidence 355666777432 22333333332 3432 444444433 4588999999974 444433
No 301
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=25.88 E-value=2.1e+02 Score=21.72 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=30.1
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.+.+.++.++++++|+. ++.+|.......+.+.+.+++.
T Consensus 74 ~~g~~~ll~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 74 DPGFKEFIAFIKEHGID-FIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred CccHHHHHHHHHHcCCc-EEEEeCCcHHHHHHHHHHcCCh
Confidence 45677777888888988 8888877777777788888774
No 302
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=25.77 E-value=2.1e+02 Score=24.28 Aligned_cols=45 Identities=4% Similarity=0.209 Sum_probs=35.1
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY 141 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll 141 (203)
.|...+..++++++|+. +..+|......+....+.+++...|..+
T Consensus 144 ~pg~~e~L~~L~~~gi~-laIvSn~~~~~~~~~L~~~gl~~~F~~v 188 (273)
T PRK13225 144 FPGVADLLAQLRSRSLC-LGILSSNSRQNIEAFLQRQGLRSLFSVV 188 (273)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCChhheEEE
Confidence 47788888899999998 8888887777888888999875335444
No 303
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=25.68 E-value=1.9e+02 Score=23.03 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=33.6
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
+...+...+++++|+. ++.+|-.+...++.+.+..++. +.++++..
T Consensus 19 ~~~~~~l~~l~~~gi~-~~i~TgR~~~~~~~~~~~l~~~-~~~~I~~N 64 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIP-VILCTSKTAAEVEYLQKALGLT-GDPYIAEN 64 (221)
T ss_pred HHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCC-CCcEEEeC
Confidence 3345667778889998 8888888888888899988874 24555543
No 304
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=25.41 E-value=82 Score=20.52 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=14.9
Q ss_pred CcceEEEEEe-CCEEEEEE
Q 028808 166 RSERWSAYVE-DGRIKALN 183 (203)
Q Consensus 166 ~~~r~tfIId-dG~I~~~~ 183 (203)
+..|-++.+| +|+|..+.
T Consensus 40 r~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 40 RPDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCCcEEEEECCCCcEEEEe
Confidence 4568899999 99998765
No 305
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.08 E-value=1.8e+02 Score=24.31 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=32.4
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCce------EEEeeCCchH
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVI------EFYGDFDGSF 148 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~f------pllsD~~~~v 148 (203)
|...++...++++|++ |+.||-.=..-..--+.++|++ + .++.|.++++
T Consensus 91 ~Gi~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~--~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIP--KSNIYANELLFDKDGKY 145 (227)
T ss_pred CCHHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCc--HhhhhhheeeeccCCcc
Confidence 5566667788999998 9999865433334446667775 3 4555666654
No 306
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=24.43 E-value=2e+02 Score=18.67 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=25.1
Q ss_pred eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
|-...||.|.+- . .-+.++|+. .-.+..+... ...+ +..+.. ..|++.+.
T Consensus 5 y~~~~~p~c~kv-~-------~~L~~~gi~-y~~~~~~~~~-~~~~-~~~~~~-~vP~l~~~ 54 (77)
T cd03040 5 YQYKTCPFCCKV-R-------AFLDYHGIP-YEVVEVNPVS-RKEI-KWSSYK-KVPILRVE 54 (77)
T ss_pred EEcCCCHHHHHH-H-------HHHHHCCCc-eEEEECCchh-HHHH-HHhCCC-ccCEEEEC
Confidence 445679998754 2 223456666 4445444322 1222 223332 47777654
No 307
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.36 E-value=54 Score=21.77 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=24.9
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCc-EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGID-SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~-~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
.|....||.|.+- .- -++++|++ +++.+.....+....+..+.+-...+|+|.|.+
T Consensus 3 ly~~~~s~~s~rv-~~-------~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g 59 (73)
T cd03052 3 LYHWTQSFSSQKV-RL-------VIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGD 59 (73)
T ss_pred EecCCCCccHHHH-HH-------HHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECC
Confidence 3555566666432 11 12334443 155554432222233333433323578887743
No 308
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.12 E-value=1.5e+02 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=33.3
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++.+.++++|.+ ++.||-...+-.+..++++|+.
T Consensus 79 ~~ga~elv~~lk~~G~~-v~iiSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 79 TPGAEELVAALKAAGAK-VVIISGGFTFLVEPIAERLGID 117 (212)
T ss_pred CccHHHHHHHHHHCCCE-EEEEcCChHHHHHHHHHHhCCc
Confidence 57778888899999998 9999987777888899999875
No 309
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=23.99 E-value=1.9e+02 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++.++++++|+. +..+|......++...+.+++.
T Consensus 89 ~~G~~~~L~~L~~~g~~-~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGIK-VALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHhhhh
Confidence 56778888899999987 8777777767677777777763
No 310
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=23.70 E-value=2.6e+02 Score=25.74 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=36.3
Q ss_pred hhhHHHhHHHHH-HcCCcEEEEEecCC-----HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808 96 VPSYKNNIDKFK-AKGIDSVICVAVND-----PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL 154 (203)
Q Consensus 96 l~~l~~~~~~f~-~~gv~~vi~IS~d~-----~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv 154 (203)
.-.+.+++..|. ..+-..|=-|+.|+ .++++.|++-+++| +.+..|+ .++..+...
T Consensus 217 TTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp--~~vv~~~-~el~~ai~~ 278 (407)
T COG1419 217 TTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP--LEVVYSP-KELAEAIEA 278 (407)
T ss_pred HHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc--eEEecCH-HHHHHHHHH
Confidence 455667766665 22222255678886 46788999999997 8887765 455554433
No 311
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=23.65 E-value=1.9e+02 Score=22.85 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808 100 KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG 146 (203)
Q Consensus 100 ~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~ 146 (203)
++..+.|++.|++ |+.+|..+.....++.+...-+ .-++.-+.+
T Consensus 2 ~~~~~~y~~~gy~-v~~~S~~~~~g~~~l~~~l~~k--~~vl~G~SG 45 (161)
T PF03193_consen 2 EELLEQYEKLGYP-VFFISAKTGEGIEELKELLKGK--TSVLLGQSG 45 (161)
T ss_dssp HHHHHHHHHTTSE-EEE-BTTTTTTHHHHHHHHTTS--EEEEECSTT
T ss_pred HHHHHHHHHcCCc-EEEEeCCCCcCHHHHHHHhcCC--EEEEECCCC
Confidence 3566778899999 9999998766666666666544 666666533
No 312
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=23.48 E-value=2.7e+02 Score=24.56 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=33.6
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG 142 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls 142 (203)
|...+..++++++|+. +..+|........+..++.|+...|..+.
T Consensus 149 PgV~EaL~~LkekGik-LaIaTS~~Re~v~~~L~~lGLd~YFdvII 193 (301)
T TIGR01684 149 PRIYDSLTELKKRGCI-LVLWSYGDRDHVVESMRKVKLDRYFDIII 193 (301)
T ss_pred HHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHHcCCCcccCEEE
Confidence 7888999999999986 66666666666778889999863344443
No 313
>PRK10853 putative reductase; Provisional
Probab=23.40 E-value=1.1e+02 Score=22.84 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=39.8
Q ss_pred EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--C--CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--N--DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d--~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
.+|--..|..|++. + ..++++|+. +-.+.. + +....+.|.++.|++ . +....+...+.++..
T Consensus 3 ~iy~~~~C~t~rkA-~-------~~L~~~~i~-~~~~d~~k~p~s~~eL~~~l~~~g~~-~---l~n~~~~~~r~L~~~ 68 (118)
T PRK10853 3 TLYGIKNCDTIKKA-R-------RWLEAQGID-YRFHDYRVDGLDSELLQGFIDELGWE-A---LLNTRGTTWRKLDET 68 (118)
T ss_pred EEEcCCCCHHHHHH-H-------HHHHHcCCC-cEEeehccCCcCHHHHHHHHHHcCHH-H---HHhcCCchHHhCCHh
Confidence 45667788888765 3 334566777 666653 2 346788999988864 1 445566666666654
No 314
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.11 E-value=2.9e+02 Score=20.29 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=29.9
Q ss_pred ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808 68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119 (203)
Q Consensus 68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~ 119 (203)
..++| .+..+=|+.|. .|..|. -..+....+++++.|++ +|-+|+
T Consensus 29 ~F~~y-~~~~~elvgf~--~CgGCp---g~~~~~~~~~l~~~~~d-~IHlss 73 (107)
T PF08821_consen 29 AFARY-DDEDVELVGFF--TCGGCP---GRKLVRRIKKLKKNGAD-VIHLSS 73 (107)
T ss_pred ccccC-CCCCeEEEEEe--eCCCCC---hhHHHHHHHHHHHCCCC-EEEEcC
Confidence 45553 54224444443 566665 35688888899999999 988764
No 315
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=23.10 E-value=1.7e+02 Score=25.62 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=31.8
Q ss_pred ccchhhHHHhHHHHHHcCCcEEEEEecCCH------HHHHHHHH------HhCCCCceEEEeeC
Q 028808 93 NQHVPSYKNNIDKFKAKGIDSVICVAVNDP------YVMNGWAE------KLQAKDVIEFYGDF 144 (203)
Q Consensus 93 ~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~------~~~~~~~~------~~~l~~~fpllsD~ 144 (203)
.| +.+|.++.+.-++.||+.+++||+-.. +..++..+ +.|+. .|-++.|-
T Consensus 53 ~e-l~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr-~FailfDD 114 (306)
T PF07555_consen 53 EE-LAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVR-SFAILFDD 114 (306)
T ss_dssp HH-HHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-TS
T ss_pred HH-HHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCC-EEEEeecC
Confidence 35 888999999999999999999998421 22333322 23555 68888875
No 316
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.04 E-value=1.6e+02 Score=23.57 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=32.4
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...+..+.++++|+. +..+|.......+.+.++.++.
T Consensus 94 ~~g~~~~l~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~ 132 (222)
T PRK10826 94 LPGVREALALCKAQGLK-IGLASASPLHMLEAVLTMFDLR 132 (222)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCcHHHHHHHHHhCcch
Confidence 57788888899999998 8888888777788888888874
No 317
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=22.45 E-value=2.2e+02 Score=22.05 Aligned_cols=54 Identities=6% Similarity=0.206 Sum_probs=35.1
Q ss_pred CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.++|++-|-.+|-|.|... =.-|.+..+.... +..|+.+-.|+ ...|.+-+++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~m-D~~L~~i~~~vsn--fa~Iylvdide---V~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKM-DELLSSIAEDVSN--FAVIYLVDIDE---VPDFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhH-HHHHHHHHHHHhh--ceEEEEEecch---hhhhhhhhccc
Confidence 3589999999999999854 3344556666653 33266665554 45666666663
No 318
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=22.28 E-value=1.5e+02 Score=29.21 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=33.4
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|+-.+..+++++.|++ ++.++-|++...++.+++.|+.
T Consensus 445 ~~a~~aI~~l~~aGI~-v~miTGD~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 445 HDTKETIERARHLGVE-VKMVTGDHLAIAKETARRLGLG 482 (755)
T ss_pred hhHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCCC
Confidence 4456677889999999 9999999999999999999985
No 319
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.24 E-value=1.5e+02 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=23.3
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|+..+..+++++.|++ ++.+|-|++...++.+++.|+.
T Consensus 448 ~~~~eai~~Lr~~GI~-vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 448 PGIKERFAELRKMGIK-TVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred hhHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCCc
Confidence 3444555566666666 6666666666666666666663
No 320
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=22.22 E-value=1.7e+02 Score=27.46 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=41.4
Q ss_pred hhhHHHhHHHHHHcCC-cEEEEEecCCHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCC
Q 028808 96 VPSYKNNIDKFKAKGI-DSVICVAVNDPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDL 154 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv-~~vi~IS~d~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv 154 (203)
.|...+..++++++|+ + +..+|-|+....++.+++.|+..-|. +..+...++.+.++.
T Consensus 364 ~~~~~e~i~~L~~~Gi~~-v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~i~~l~~ 423 (536)
T TIGR01512 364 RPDAAEAIAELKALGIEK-VVMLTGDRRAVAERVARELGIDEVHAELLPEDKLEIVKELRE 423 (536)
T ss_pred hHHHHHHHHHHHHcCCCc-EEEEcCCCHHHHHHHHHHcCChhhhhccCcHHHHHHHHHHHh
Confidence 4677788889999999 8 99999999999999999999852121 112234455555543
No 321
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=22.03 E-value=1.2e+02 Score=25.27 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=4.3
Q ss_pred CceEEec
Q 028808 46 QDVSLQK 52 (203)
Q Consensus 46 Pdf~l~~ 52 (203)
=||-+.+
T Consensus 106 ~Dfll~~ 112 (215)
T PF03749_consen 106 FDFLLED 112 (215)
T ss_pred EEEEEEc
Confidence 4776655
No 322
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=21.96 E-value=1.8e+02 Score=22.66 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=20.0
Q ss_pred hHHHhHHHHHHcCCcEEEEEecCC
Q 028808 98 SYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 98 ~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
.|++..+++++.|++.|+-|++|.
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Confidence 467777889999999899999884
No 323
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=21.94 E-value=2.5e+02 Score=22.01 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=30.6
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++.++++++|+. +..+|...........+..++.
T Consensus 77 ~~g~~~~L~~L~~~g~~-~~i~Sn~~~~~~~~~l~~~~l~ 115 (205)
T TIGR01454 77 FPGVPELLAELRADGVG-TAIATGKSGPRARSLLEALGLL 115 (205)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHcCCh
Confidence 57788888999999987 8888776666677777888774
No 324
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=21.85 E-value=89 Score=22.80 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=39.2
Q ss_pred EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--C--CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--N--DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d--~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
+|--..|..|++. + ..+++.|+. +..+.. + +......|.+..+.. +.-+....+...+.+++.
T Consensus 3 iy~~~~C~t~rkA-~-------~~L~~~~i~-~~~~di~~~~~t~~el~~~l~~~~~~--~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 3 IYHNPRCSKSRNA-L-------ALLEEAGIE-PEIVEYLKTPPTAAELRELLAKLGIS--PRDLLRTKEAPYKELGLA 69 (112)
T ss_pred EEECCCCHHHHHH-H-------HHHHHCCCC-eEEEecccCCcCHHHHHHHHHHcCCC--HHHHHhcCCchHHHcCCC
Confidence 4666788888765 3 345566776 555543 3 346788999998853 333445566666666554
No 325
>TIGR00035 asp_race aspartate racemase.
Probab=21.85 E-value=1.9e+02 Score=23.75 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.7
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYV 124 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~ 124 (203)
.+.+.+..+++++.|++ .++|.+|+...
T Consensus 61 ~~~l~~~~~~L~~~g~d-~iviaCNTah~ 88 (229)
T TIGR00035 61 RPILIDIAVKLENAGAD-FIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCccHHH
Confidence 57788888899999999 99999998643
No 326
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=21.84 E-value=2.2e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=27.0
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVN-DPYVMNGWAEKLQ 133 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d-~~~~~~~~~~~~~ 133 (203)
.+...+..++++++|+. +..+|.. .+.......+..+
T Consensus 31 ~~gv~e~L~~Lk~~g~~-l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFL-LALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHCCeE-EEEEeCCCCHHHHHHHHHhcc
Confidence 57888889999999987 7777777 5555555555554
No 327
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=21.57 E-value=1.8e+02 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.3
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|...+..++++++|++ +..+|.|+....++.+++++++
T Consensus 408 ~~a~e~i~~Lk~~Gi~-v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 408 PEAKEVIQALKRRGIE-PVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHHHcCCe-EEEEcCCCHHHHHHHHHHcCCc
Confidence 6677788889999998 9999999988899999999984
No 328
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=21.55 E-value=1.7e+02 Score=28.71 Aligned_cols=38 Identities=8% Similarity=0.181 Sum_probs=28.6
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
|+..+..+++++.|++ ++.|+-|++...++.+++.|+.
T Consensus 444 ~~a~e~I~~Lr~~GI~-vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 444 DGLVERFRELREMGIE-TVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCCc
Confidence 4555666777778887 8888888888888888888873
No 329
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=21.55 E-value=1.7e+02 Score=19.05 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=15.6
Q ss_pred EEEEEe-CCEEEEEEeecCCC
Q 028808 170 WSAYVE-DGRIKALNVEEAPS 189 (203)
Q Consensus 170 ~tfIId-dG~I~~~~~~~~~~ 189 (203)
-.|.|| ||+|..+.+-...+
T Consensus 20 v~~~I~~~G~v~~~~v~~s~~ 40 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRVIQSSG 40 (79)
T ss_dssp EEEEEETTTEEEEEEEEEESS
T ss_pred EEEEEeCCCCEEEEEEEEccC
Confidence 368999 99999988776443
No 330
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=21.54 E-value=64 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.4
Q ss_pred eEEEEEeCCEEEEEEeec
Q 028808 169 RWSAYVEDGRIKALNVEE 186 (203)
Q Consensus 169 r~tfIIddG~I~~~~~~~ 186 (203)
+--|+.|||+|+|.+-++
T Consensus 25 ~hgflfddg~~vw~e~~d 42 (111)
T PF02484_consen 25 RHGFLFDDGDIVWSEDDD 42 (111)
T ss_pred ccceEecCCcEEEecCCh
Confidence 346999999999997654
No 331
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=21.47 E-value=2e+02 Score=23.77 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=31.2
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.|...++.+.++++|+. +..+|......++...+..++.
T Consensus 110 ~pgv~e~L~~L~~~g~~-l~I~Tn~~~~~~~~~l~~~gl~ 148 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLK-RAAVTNAPRENAELMISLLGLS 148 (248)
T ss_pred CccHHHHHHHHHHcCCe-EEEEeCCCHHHHHHHHHHcCCh
Confidence 56777888889999987 7777777777788888888874
No 332
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.46 E-value=3e+02 Score=24.88 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.0
Q ss_pred hHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808 98 SYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG 146 (203)
Q Consensus 98 ~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~ 146 (203)
.-.+...++.+.|++ ++=+++.+.+..+++.+=..-. +.|++.|-+-
T Consensus 43 atv~Qi~~L~~aGce-iVRvav~~~~~a~al~~I~~~~-~iPlvADIHF 89 (360)
T PRK00366 43 ATVAQIKRLARAGCE-IVRVAVPDMEAAAALPEIKKQL-PVPLVADIHF 89 (360)
T ss_pred HHHHHHHHHHHcCCC-EEEEccCCHHHHHhHHHHHHcC-CCCEEEecCC
Confidence 334445677889999 9999999987766664433321 4999999743
No 333
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.38 E-value=1.9e+02 Score=20.65 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=23.5
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHH
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWA 129 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~ 129 (203)
-.++.+..+..+++|+. +|.|+.+......+.+
T Consensus 66 ~~~~~~~~~~ak~~g~~-vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 66 TRELIELLRFAKERGAP-VILITSNSESPLARLA 98 (131)
T ss_dssp THHHHHHHHHHHHTTSE-EEEEESSTTSHHHHHS
T ss_pred chhhhhhhHHHHhcCCe-EEEEeCCCCCchhhhC
Confidence 46677777888999999 9999876544343333
No 334
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=21.37 E-value=75 Score=22.68 Aligned_cols=52 Identities=13% Similarity=-0.029 Sum_probs=27.1
Q ss_pred CCCCCCCccchhhHHHhHHHHHHcCCcE-EEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchH
Q 028808 86 AYTGVCSNQHVPSYKNNIDKFKAKGIDS-VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSF 148 (203)
Q Consensus 86 ~~cp~C~~ehl~~l~~~~~~f~~~gv~~-vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v 148 (203)
.+||+|++- .-.| .++|+.. ++-|..++.. +|..+.+-...+|+|.|.+..+
T Consensus 20 g~cpf~~rv-rl~L-------~eKgi~ye~~~vd~~~~p---~~~~~~nP~g~vPvL~~~~~~i 72 (91)
T cd03061 20 GNCPFCQRL-FMVL-------WLKGVVFNVTTVDMKRKP---EDLKDLAPGTQPPFLLYNGEVK 72 (91)
T ss_pred CCChhHHHH-HHHH-------HHCCCceEEEEeCCCCCC---HHHHHhCCCCCCCEEEECCEEe
Confidence 368888643 2222 2345551 4445544422 3444444323689998865444
No 335
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=21.34 E-value=1.7e+02 Score=28.61 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=23.2
Q ss_pred hHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 98 SYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 98 ~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
+..+..+++++.|++ ++.||-|.+...++.+++.|+.
T Consensus 450 ~a~eaI~~l~~~Gi~-v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 450 GIKERFAQLRKMGIK-TIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred HHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCCC
Confidence 444555566666666 6666666666666666666663
No 336
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.34 E-value=2.2e+02 Score=23.97 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=31.8
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHH---HHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPY---VMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~---~~~~~~~~~~l~ 135 (203)
+|.-.+++.+++++|+. |+-+|--+.. ...++..+.|++
T Consensus 122 ip~al~l~~~l~~~G~~-Vf~lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIK-IFLLSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred CHHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHHcCCC
Confidence 78888899999999999 9998876543 366888888886
No 337
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.07 E-value=3.7e+02 Score=20.72 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=31.2
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHH---HHHHHHH-----hCCCCceEEEeeCCc
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYV---MNGWAEK-----LQAKDVIEFYGDFDG 146 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~---~~~~~~~-----~~l~~~fpllsD~~~ 146 (203)
+...+++.+++++|.. ++-+|--+... .++|.++ ++++ .-|++.-+.+
T Consensus 30 ~~~~~a~~~l~~~G~~-ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp-~g~li~~~g~ 85 (157)
T smart00775 30 PGVAKLYRDIQNNGYK-ILYLTARPIGQADRTRSYLSQIKQDGHNLP-HGPVLLSPDR 85 (157)
T ss_pred HHHHHHHHHHHHcCCe-EEEEcCCcHHHHHHHHHHHHHhhhccccCC-CceEEEcCCc
Confidence 5666788888999987 77777655433 3588888 4454 2355554443
No 338
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=21.05 E-value=2.3e+02 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=10.9
Q ss_pred CCcEEEEEecCCHHHHHHHHHHhCC
Q 028808 110 GIDSVICVAVNDPYVMNGWAEKLQA 134 (203)
Q Consensus 110 gv~~vi~IS~d~~~~~~~~~~~~~l 134 (203)
|++ ++.||--...-.+.|.+.+++
T Consensus 89 ~~~-~~IiSDaNs~fI~~iL~~~gl 112 (234)
T PF06888_consen 89 GFD-LIIISDANSFFIETILEHHGL 112 (234)
T ss_pred Cce-EEEEeCCcHhHHHHHHHhCCC
Confidence 444 444444333444444444444
No 339
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=20.90 E-value=3.8e+02 Score=20.27 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=32.5
Q ss_pred EEEEeeCCCCC--CCC----ccchhhHHHhHHHHHHcCCcEEEEEecCC-H--H----HHHHHHHHhCC
Q 028808 79 VIFGLPGAYTG--VCS----NQHVPSYKNNIDKFKAKGIDSVICVAVND-P--Y----VMNGWAEKLQA 134 (203)
Q Consensus 79 VL~~f~~~~cp--~C~----~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~--~----~~~~~~~~~~l 134 (203)
+-+|=|+-.|+ +|- .| +..|....+.++++|++ |.-.+..+ | + .+.++.++.|.
T Consensus 4 i~ifepamCC~tGvCG~~vd~e-L~~~a~~~~~Lk~~gv~-v~RyNL~~~P~aF~~n~~V~~~L~~~G~ 70 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPE-LVRFAADLDWLKEQGVE-VERYNLAQNPQAFVENPEVNQLLQTEGA 70 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HH-HHHHHHHHHHHHHTT-E-EEEEETTT-TTHHHHSHHHHHHHHHH-G
T ss_pred eEEeccccccccCccCCCCCHH-HHHHHHHHHHHHhCCce-EEEEccccCHHHHHhCHHHHHHHHHcCc
Confidence 44566777774 553 35 78888899999999998 77666543 2 1 34556666654
No 340
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=2.8e+02 Score=23.01 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=14.7
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVND 121 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~ 121 (203)
|.|.+.++..+++++. +|.||..-
T Consensus 76 p~fKef~e~ike~di~-fiVvSsGm 99 (220)
T COG4359 76 PGFKEFVEWIKEHDIP-FIVVSSGM 99 (220)
T ss_pred ccHHHHHHHHHHcCCC-EEEEeCCC
Confidence 3455556666666776 66666653
No 341
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=20.82 E-value=3e+02 Score=25.11 Aligned_cols=11 Identities=18% Similarity=-0.006 Sum_probs=5.9
Q ss_pred HHHHHHHhCCC
Q 028808 125 MNGWAEKLQAK 135 (203)
Q Consensus 125 ~~~~~~~~~l~ 135 (203)
.....+++|++
T Consensus 191 ~~~ll~~lG~~ 201 (446)
T PRK14324 191 APTVFSELGAD 201 (446)
T ss_pred HHHHHHHcCCe
Confidence 44555666653
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.70 E-value=1.7e+02 Score=27.48 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=13.5
Q ss_pred CeEEEEEeeCCCCCCCCc
Q 028808 76 KKVVIFGLPGAYTGVCSN 93 (203)
Q Consensus 76 k~vVL~~f~~~~cp~C~~ 93 (203)
+++-+-.|-+.+||.|..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~ 493 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPD 493 (555)
T ss_pred CCeEEEEEECCCCCCcHH
Confidence 445566678999999964
No 343
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=20.67 E-value=1.2e+02 Score=19.58 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.4
Q ss_pred eEEEEEe-CCEEEEEEeecCC
Q 028808 169 RWSAYVE-DGRIKALNVEEAP 188 (203)
Q Consensus 169 r~tfIId-dG~I~~~~~~~~~ 188 (203)
.-.|.|+ +|+|....+....
T Consensus 13 ~v~~~i~~~G~v~~~~i~~ss 33 (74)
T TIGR01352 13 VVRFTVDADGRVTSVSVLKSS 33 (74)
T ss_pred EEEEEECCCCCEEEEEEEEcC
Confidence 3468999 9999998876543
No 344
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=20.61 E-value=2.9e+02 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=31.0
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
..|+++.++++++|.. ++...-+......++++++++.
T Consensus 61 esL~~L~~~L~~~g~~-L~v~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSD-LLVRSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHHHHHcCCC-eEEEeCCHHHHHHHHHHHhCCC
Confidence 5677788888999998 8888777777888899888874
No 345
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.47 E-value=2.7e+02 Score=18.45 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=27.3
Q ss_pred hhhHHHhHHHHHHcCCcEEEE-EecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808 96 VPSYKNNIDKFKAKGIDSVIC-VAVNDPYVMNGWAEKLQAKDVIEFYGDF 144 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~-IS~d~~~~~~~~~~~~~l~~~fpllsD~ 144 (203)
...-.+++.++++.|+. +.. .+..+...+.+++++.|++ +-++.+.
T Consensus 14 ~~~a~~~~~~Lr~~g~~-v~~d~~~~~~~~~~~~a~~~g~~--~~iiig~ 60 (91)
T cd00860 14 LDYAKEVAKKLSDAGIR-VEVDLRNEKLGKKIREAQLQKIP--YILVVGD 60 (91)
T ss_pred HHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHcCCC--EEEEECc
Confidence 34455667777777776 433 3334445566677777775 6555543
No 346
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.40 E-value=1.3e+02 Score=27.43 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=24.5
Q ss_pred CCCCCCCCccch------hhHHHhHHHHHHcCCcEEEEEecCCH
Q 028808 85 GAYTGVCSNQHV------PSYKNNIDKFKAKGIDSVICVAVNDP 122 (203)
Q Consensus 85 ~~~cp~C~~ehl------~~l~~~~~~f~~~gv~~vi~IS~d~~ 122 (203)
...||.|-.+ + +.+..+.+..++.|.+ |..||.+..
T Consensus 350 ~~~c~~~~~~-~~~~~~~~~v~~l~e~a~~~g~~-v~iis~~~e 391 (411)
T PRK04011 350 EKTCPKCGSE-LEIVEEEDIIEELSELAEQSGTK-VEVISTDTE 391 (411)
T ss_pred cccCcccCcc-cccchhhhHHHHHHHHHHHcCCE-EEEECCCCh
Confidence 3467777544 3 3355567777788888 888887765
No 347
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=20.34 E-value=1.8e+02 Score=19.88 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=7.5
Q ss_pred eeCCCCCCCCc
Q 028808 83 LPGAYTGVCSN 93 (203)
Q Consensus 83 f~~~~cp~C~~ 93 (203)
|....||.|.+
T Consensus 22 y~~~~sp~~~k 32 (89)
T cd03055 22 YSMRFCPYAQR 32 (89)
T ss_pred EeCCCCchHHH
Confidence 44567898864
No 348
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=20.24 E-value=4.9e+02 Score=21.32 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=35.3
Q ss_pred hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808 97 PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145 (203)
Q Consensus 97 ~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~ 145 (203)
+...+..++.+++|+. ++-.+-.....+....++.++. .++++.-.
T Consensus 23 ~~~~~al~~~~~~g~~-v~iaTGR~~~~~~~~~~~l~~~--~~~I~~NG 68 (264)
T COG0561 23 PETKEALARLREKGVK-VVLATGRPLPDVLSILEELGLD--GPLITFNG 68 (264)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCChHHHHHHHHHcCCC--ccEEEeCC
Confidence 6667777788999998 7777777778889999999986 45555443
No 349
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.15 E-value=2e+02 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.2
Q ss_pred hHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 102 NIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 102 ~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
..++++++|+. +..+|...........+++++.
T Consensus 36 ~i~~Lk~~G~~-i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIE-VAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCE-EEEEECCCCHHHHHHHHHcCCC
Confidence 46777888887 7777777766777888888875
No 350
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=20.10 E-value=2.5e+02 Score=24.48 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=28.9
Q ss_pred hhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808 96 VPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK 135 (203)
Q Consensus 96 l~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~ 135 (203)
.++..+..+..+++|+. +|+|+.+.+ +.++++.++.+
T Consensus 91 T~e~~~a~~~a~~~ga~-vIaIT~~~~--L~~~a~~~~~~ 127 (337)
T PRK08674 91 TEETLSAVEQALKRGAK-IIAITSGGK--LKEMAKEHGLP 127 (337)
T ss_pred CHHHHHHHHHHHHCCCe-EEEECCCch--HHHHHHhcCCe
Confidence 46677778888999998 999986653 77888887654
No 351
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.07 E-value=6.7e+02 Score=22.87 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHcCCcEEEEEecC-----------------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808 103 IDKFKAKGIDSVICVAVN-----------------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG 155 (203)
Q Consensus 103 ~~~f~~~gv~~vi~IS~d-----------------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~ 155 (203)
..-+.+.|.+ ++++..+ |.+...+++++.+.. +-+-+-....+++++|+.
T Consensus 327 ~~~l~elGm~-v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~d--liig~s~~k~~A~~l~ip 393 (432)
T TIGR01285 327 ATFFTSMGAQ-IVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGAD--LLITNSHGRALAQRLALP 393 (432)
T ss_pred HHHHHHCCCE-EEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCC--EEEECcchHHHHHHcCCC
Confidence 3335678888 7776654 344555556555542 333333355677777764
Done!