Query 028809
Match_columns 203
No_of_seqs 269 out of 1770
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 1.7E-25 3.6E-30 177.9 14.1 119 74-201 9-135 (142)
2 PRK10743 heat shock protein Ib 99.9 4.5E-25 9.7E-30 174.6 12.9 97 102-201 33-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 1.4E-24 3.1E-29 172.8 13.5 98 102-200 39-145 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.9E-22 4.1E-27 148.6 10.7 82 106-188 2-92 (92)
5 cd06497 ACD_alphaA-crystallin_ 99.9 7.6E-22 1.7E-26 144.4 11.2 81 107-188 4-86 (86)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 1.8E-21 4E-26 144.8 12.2 94 107-201 1-102 (102)
7 cd06471 ACD_LpsHSP_like Group 99.9 1.3E-21 2.9E-26 144.0 11.0 83 104-188 1-93 (93)
8 cd06479 ACD_HspB7_like Alpha c 99.9 1.2E-21 2.6E-26 142.1 10.0 79 107-188 2-81 (81)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 2.3E-21 5E-26 140.9 10.9 81 107-188 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2.8E-21 6E-26 140.9 11.0 81 108-189 2-84 (84)
11 cd06470 ACD_IbpA-B_like Alpha- 99.9 5.6E-21 1.2E-25 140.6 11.3 82 104-188 1-90 (90)
12 cd06475 ACD_HspB1_like Alpha c 99.9 6.9E-21 1.5E-25 139.4 11.0 81 106-187 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.8 1.8E-20 4E-25 136.4 10.6 80 108-188 2-83 (83)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 6.4E-20 1.4E-24 133.6 10.6 78 109-187 3-82 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.8 8.3E-20 1.8E-24 133.9 9.5 78 110-188 4-87 (87)
16 cd06526 metazoan_ACD Alpha-cry 99.8 1.3E-19 2.9E-24 131.1 9.9 75 113-188 7-83 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 3.2E-19 7E-24 131.0 9.8 76 111-187 6-86 (87)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 6.6E-19 1.4E-23 126.2 9.8 81 107-188 1-88 (88)
19 KOG0710 Molecular chaperone (s 99.8 1.2E-18 2.6E-23 145.3 8.3 101 102-203 83-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 1.9E-16 4.2E-21 117.1 9.7 80 108-188 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.6 1E-14 2.3E-19 119.5 11.2 96 105-201 64-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2.6E-14 5.6E-19 98.5 10.5 80 108-188 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 6.6E-12 1.4E-16 88.8 9.0 71 108-191 1-71 (78)
24 cd06463 p23_like Proteins cont 99.1 1.6E-09 3.4E-14 76.2 9.6 76 108-191 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 2.3E-09 5E-14 87.9 10.2 78 102-192 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 1.6E-08 3.4E-13 72.2 8.4 77 107-191 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 2.4E-06 5.3E-11 59.4 12.5 77 104-188 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 1E-05 2.2E-10 60.9 10.9 78 104-190 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.1 2.6E-05 5.7E-10 56.0 9.0 76 107-190 1-76 (84)
30 PF08190 PIH1: pre-RNA process 98.1 1.7E-05 3.8E-10 69.9 8.9 65 112-187 260-327 (328)
31 cd06467 p23_NUDC_like p23_like 98.0 6.7E-05 1.5E-09 53.5 9.2 75 106-191 1-77 (85)
32 cd06468 p23_CacyBP p23_like do 98.0 0.00019 4.1E-09 52.1 10.8 79 105-191 3-85 (92)
33 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00018 4E-09 51.9 9.9 76 106-192 1-78 (85)
34 cd06488 p23_melusin_like p23_l 97.9 0.00027 5.9E-09 51.3 10.3 79 105-191 2-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 97.6 0.00087 1.9E-08 49.7 9.5 76 103-190 5-82 (93)
36 cd00237 p23 p23 binds heat sho 97.4 0.0034 7.3E-08 47.6 11.2 78 104-191 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.9 0.0083 1.8E-07 54.1 9.7 80 103-190 156-235 (356)
38 cd06492 p23_mNUDC_like p23-lik 96.6 0.032 7E-07 40.6 9.7 74 107-191 2-79 (87)
39 cd06490 p23_NCB5OR p23_like do 96.6 0.047 1E-06 39.6 10.4 76 106-191 1-80 (87)
40 KOG1309 Suppressor of G2 allel 96.6 0.0097 2.1E-07 49.3 7.3 79 103-189 3-81 (196)
41 cd06495 p23_NUDCD3_like p23-li 96.5 0.08 1.7E-06 39.9 11.2 81 102-190 3-86 (102)
42 KOG3158 HSP90 co-chaperone p23 88.7 1.9 4.2E-05 35.6 6.8 80 103-192 7-86 (180)
43 KOG2265 Nuclear distribution p 84.0 8 0.00017 32.0 8.1 78 103-191 18-97 (179)
44 PF13349 DUF4097: Domain of un 81.9 19 0.00041 27.9 9.5 76 105-186 67-148 (166)
45 COG5091 SGT1 Suppressor of G2 78.7 1.1 2.4E-05 39.8 1.4 82 102-190 175-256 (368)
46 KOG1667 Zn2+-binding protein M 77.4 11 0.00024 33.2 7.1 81 105-192 216-296 (320)
47 PF00347 Ribosomal_L6: Ribosom 72.5 9.8 0.00021 26.1 4.8 47 126-188 2-48 (77)
48 cd06471 ACD_LpsHSP_like Group 72.1 7 0.00015 28.0 4.0 30 113-142 62-91 (93)
49 PF14913 DPCD: DPCD protein fa 70.4 38 0.00083 28.4 8.4 76 102-189 85-169 (194)
50 cd06482 ACD_HspB10 Alpha cryst 70.2 12 0.00026 27.2 4.9 33 156-190 9-41 (87)
51 cd06469 p23_DYX1C1_like p23_li 69.1 16 0.00034 24.9 5.2 33 113-145 36-69 (78)
52 PRK10743 heat shock protein Ib 67.7 22 0.00049 27.9 6.4 33 157-191 47-79 (137)
53 KOG3260 Calcyclin-binding prot 67.5 18 0.00038 30.4 5.9 77 106-190 77-154 (224)
54 cd06464 ACD_sHsps-like Alpha-c 66.7 12 0.00027 25.6 4.3 33 111-143 54-87 (88)
55 PF00011 HSP20: Hsp20/alpha cr 66.5 15 0.00032 26.4 4.9 37 112-148 54-91 (102)
56 cd06476 ACD_HspB2_like Alpha c 65.5 24 0.00053 25.2 5.7 33 155-189 7-39 (83)
57 cd06472 ACD_ScHsp26_like Alpha 65.2 12 0.00026 26.8 4.0 31 112-142 59-90 (92)
58 cd06477 ACD_HspB3_Like Alpha c 64.3 35 0.00075 24.5 6.3 34 155-190 7-40 (83)
59 cd06478 ACD_HspB4-5-6 Alpha-cr 64.1 30 0.00065 24.5 5.9 32 156-189 8-39 (83)
60 cd06526 metazoan_ACD Alpha-cry 62.6 19 0.00041 25.2 4.7 35 155-191 7-41 (83)
61 cd00298 ACD_sHsps_p23-like Thi 62.1 17 0.00038 23.6 4.2 32 112-143 47-79 (80)
62 cd06497 ACD_alphaA-crystallin_ 61.5 35 0.00077 24.4 6.0 32 156-189 11-42 (86)
63 PF04972 BON: BON domain; Int 60.4 17 0.00037 23.9 3.9 26 122-147 12-37 (64)
64 PRK11597 heat shock chaperone 60.2 35 0.00077 27.0 6.2 33 157-191 45-77 (142)
65 cd06479 ACD_HspB7_like Alpha c 58.3 29 0.00063 24.7 5.0 33 156-190 9-41 (81)
66 PF12992 DUF3876: Domain of un 58.2 36 0.00079 25.2 5.6 42 102-143 24-70 (95)
67 cd06470 ACD_IbpA-B_like Alpha- 56.5 33 0.00071 24.5 5.1 35 156-192 12-46 (90)
68 cd06480 ACD_HspB8_like Alpha-c 56.4 25 0.00054 25.8 4.4 31 113-143 58-90 (91)
69 cd06463 p23_like Proteins cont 55.5 35 0.00075 22.8 4.9 36 112-147 40-76 (84)
70 cd06481 ACD_HspB9_like Alpha c 53.7 40 0.00087 24.1 5.1 34 155-190 7-40 (87)
71 PTZ00027 60S ribosomal protein 52.7 55 0.0012 27.2 6.5 47 126-187 13-59 (190)
72 PF14730 DUF4468: Domain of un 52.0 62 0.0013 23.2 5.9 62 117-188 3-85 (91)
73 KOG3591 Alpha crystallins [Pos 51.0 32 0.00069 28.2 4.7 31 118-148 120-152 (173)
74 TIGR03653 arch_L6P archaeal ri 50.7 31 0.00067 28.2 4.6 45 126-187 7-51 (170)
75 PF01954 DUF104: Protein of un 50.1 15 0.00033 24.9 2.3 18 171-188 3-20 (60)
76 PTZ00179 60S ribosomal protein 49.9 65 0.0014 26.8 6.4 47 126-187 12-58 (189)
77 PRK05518 rpl6p 50S ribosomal p 49.7 37 0.00079 28.1 4.9 45 126-187 13-57 (180)
78 cd06498 ACD_alphaB-crystallin_ 49.3 67 0.0015 22.8 5.7 32 156-189 8-39 (84)
79 COG0071 IbpA Molecular chapero 48.8 45 0.00097 26.0 5.1 35 113-147 100-135 (146)
80 KOG3247 Uncharacterized conser 48.0 8 0.00017 36.1 0.8 77 103-191 3-81 (466)
81 TIGR03654 L6_bact ribosomal pr 46.8 87 0.0019 25.6 6.7 44 126-187 11-54 (175)
82 PRK05498 rplF 50S ribosomal pr 45.5 86 0.0019 25.6 6.5 44 126-187 12-55 (178)
83 cd06475 ACD_HspB1_like Alpha c 45.4 69 0.0015 22.8 5.3 33 156-190 11-43 (86)
84 COG0097 RplF Ribosomal protein 43.5 93 0.002 25.8 6.3 47 124-187 10-56 (178)
85 CHL00140 rpl6 ribosomal protei 42.8 1.2E+02 0.0025 24.9 6.8 44 126-187 12-55 (178)
86 PRK13726 conjugal transfer pil 42.3 65 0.0014 26.7 5.3 51 127-188 131-181 (188)
87 PRK10568 periplasmic protein; 40.8 1.3E+02 0.0028 25.0 7.0 26 122-147 73-98 (203)
88 cd06466 p23_CS_SGT1_like p23_l 39.5 75 0.0016 21.7 4.6 35 112-146 41-76 (84)
89 COG4004 Uncharacterized protei 35.5 84 0.0018 23.4 4.3 35 106-144 26-60 (96)
90 PF08308 PEGA: PEGA domain; I 34.9 1.2E+02 0.0025 20.3 4.9 38 106-143 27-66 (71)
91 PF05309 TraE: TraE protein; 33.8 72 0.0016 26.0 4.3 50 126-186 130-179 (187)
92 PRK11198 LysM domain/BON super 33.1 59 0.0013 25.6 3.5 26 122-147 38-63 (147)
93 PF05455 GvpH: GvpH; InterPro 32.7 1.7E+02 0.0037 24.3 6.2 38 111-148 134-171 (177)
94 cd06467 p23_NUDC_like p23_like 32.4 1E+02 0.0022 21.1 4.3 31 156-187 9-39 (85)
95 PF07873 YabP: YabP family; I 32.3 34 0.00075 23.3 1.8 21 124-144 23-43 (66)
96 PF10988 DUF2807: Protein of u 31.1 78 0.0017 24.9 4.0 29 159-189 23-51 (181)
97 PF13349 DUF4097: Domain of un 30.2 1.6E+02 0.0035 22.5 5.6 31 112-142 117-148 (166)
98 TIGR02761 TraE_TIGR type IV co 28.9 1.2E+02 0.0027 24.7 4.9 49 126-185 130-178 (181)
99 cd06494 p23_NUDCD2_like p23-li 28.4 1.2E+02 0.0026 22.1 4.2 30 156-186 16-45 (93)
100 TIGR00251 conserved hypothetic 27.8 1.5E+02 0.0032 21.6 4.6 39 108-147 1-42 (87)
101 TIGR02892 spore_yabP sporulati 26.7 50 0.0011 24.0 1.9 21 124-144 22-42 (85)
102 KOG3413 Mitochondrial matrix p 26.7 30 0.00064 28.0 0.8 25 163-188 65-89 (156)
103 PF01491 Frataxin_Cyay: Fratax 26.7 76 0.0017 23.8 3.0 18 171-188 30-47 (109)
104 TIGR02856 spore_yqfC sporulati 25.5 54 0.0012 23.7 1.9 22 123-144 40-61 (85)
105 cd00503 Frataxin Frataxin is a 25.4 69 0.0015 24.0 2.6 18 171-188 28-45 (105)
106 PF08845 SymE_toxin: Toxin Sym 25.2 1.1E+02 0.0024 20.5 3.2 20 122-141 36-56 (57)
107 cd06465 p23_hB-ind1_like p23_l 25.0 1.7E+02 0.0036 21.4 4.6 35 112-146 43-78 (108)
108 PRK00446 cyaY frataxin-like pr 24.7 65 0.0014 24.2 2.3 16 173-188 29-44 (105)
109 TIGR03000 plancto_dom_1 Planct 24.3 2.1E+02 0.0045 20.5 4.7 25 116-144 4-28 (75)
110 TIGR03421 FeS_CyaY iron donor 24.0 65 0.0014 24.1 2.2 17 172-188 26-42 (102)
111 PF06964 Alpha-L-AF_C: Alpha-L 21.2 2.1E+02 0.0046 22.7 4.9 26 162-188 150-175 (177)
112 PLN02711 Probable galactinol-- 20.6 2.2E+02 0.0048 28.9 5.6 34 156-190 733-766 (777)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=1.7e-25 Score=177.93 Aligned_cols=119 Identities=16% Similarity=0.293 Sum_probs=92.7
Q ss_pred CCCCCccchHHHhhhcCCCCccCCCCCCCCCceeEEE-cCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC--
Q 028809 74 PFEPFSRSRSLSMNENGEGLYSAGAGAGLRPRWAAKV-TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-- 150 (203)
Q Consensus 74 ~~dPf~~~~~l~~~~~~~~~~~~~~~~~~~p~~di~E-~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-- 150 (203)
++.+|..++.|.+.|+.. .+....|++||+| ++++|+|.++|||++|+||+|.+++|.|+|+|+++.+.++
T Consensus 9 ~~~~~~~~d~l~~~~~~~------~~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~ 82 (142)
T PRK11597 9 LLRQWIGFDKLANALQNA------GESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVK 82 (142)
T ss_pred hhcccccHHHHHHHhccc------CccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCc
Confidence 344555666655555421 1123579999998 5779999999999999999999999999999997654332
Q ss_pred ----CceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC-CCCCCCeEEee
Q 028809 151 ----EESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK-EDERTDVLHIK 201 (203)
Q Consensus 151 ----e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~-~~~~~~~i~I~ 201 (203)
|+.++.|.|+|.||.+| |.+ +|+|+||||+|+|||.. +..++++|+|+
T Consensus 83 ~~~~Er~~g~F~R~f~LP~~v-d~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 83 WLHQGLVNQPFSLSFTLAENM-EVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred EEEEEEeCcEEEEEEECCCCc-ccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 35678999999999999 887 79999999999999964 33456777775
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=4.5e-25 Score=174.55 Aligned_cols=97 Identities=20% Similarity=0.422 Sum_probs=82.0
Q ss_pred CCCceeEEE-cCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC------CceeeEEEEEEECCCCCCCCcceE
Q 028809 102 LRPRWAAKV-TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD------EESVRRYTIRIELPEKIFKTDQIK 174 (203)
Q Consensus 102 ~~p~~di~E-~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~F~r~~~LP~~v~d~d~i~ 174 (203)
..|++||.+ ++++|+|+++|||++|+||+|++++|.|+|+|+++.+.++ |+.+++|.|+|.||.+| +.+ +
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~V-d~~--~ 109 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENI-HVR--G 109 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCc-ccC--c
Confidence 459999995 8999999999999999999999999999999998765433 34578999999999999 888 5
Q ss_pred EEEECCEEEEEEeccCC-CCCCCeEEee
Q 028809 175 AEMKNGVLKLTLPMMKE-DERTDVLHIK 201 (203)
Q Consensus 175 A~~~nGvL~I~lPK~~~-~~~~~~i~I~ 201 (203)
|+|+||||+|++||.++ ..++++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 99999999999999643 3445666653
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=172.77 Aligned_cols=98 Identities=33% Similarity=0.605 Sum_probs=86.0
Q ss_pred CCCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCC--C------CceeeEEEEEEECCCCCCCCcce
Q 028809 102 LRPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDG--D------EESVRRYTIRIELPEKIFKTDQI 173 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~--~------e~~~~~F~r~~~LP~~v~d~d~i 173 (203)
+.|++||+|++++|+|.++|||++++||+|+++++.|+|+|++..+.+ . ++.++.|.|+|.||..| +++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v-~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc-cccce
Confidence 689999999999999999999999999999999999999999986322 1 35578999999999999 99999
Q ss_pred EEEEECCEEEEEEeccCCCC-CCCeEEe
Q 028809 174 KAEMKNGVLKLTLPMMKEDE-RTDVLHI 200 (203)
Q Consensus 174 ~A~~~nGvL~I~lPK~~~~~-~~~~i~I 200 (203)
+|+|+||+|+|+|||.++++ +++.|.|
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeec
Confidence 99999999999999987653 3455554
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.88 E-value=1.9e-22 Score=148.60 Aligned_cols=82 Identities=40% Similarity=0.610 Sum_probs=74.1
Q ss_pred eeEEEcCCeEEEEEECCCCCCCceEEEEEC-CEEEEEEeecCcCCC--------CceeeEEEEEEECCCCCCCCcceEEE
Q 028809 106 WAAKVTKDALNLSVDMPGLAKEDVRVSLEQ-NTLVIKGKGGKEDGD--------EESVRRYTIRIELPEKIFKTDQIKAE 176 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLPGv~kedI~V~v~~-~~L~I~g~~~~~~~~--------e~~~~~F~r~~~LP~~v~d~d~i~A~ 176 (203)
+||+|++++|+|.++|||++|+||+|++++ +.|+|+|++..+... |+.++.|.|+|.||..+ +.+.|+|+
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-~~~~i~A~ 80 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENA-DADEVKAF 80 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCC-CHHHCEEE
Confidence 799999999999999999999999999987 599999998654321 35578999999999999 99999999
Q ss_pred EECCEEEEEEec
Q 028809 177 MKNGVLKLTLPM 188 (203)
Q Consensus 177 ~~nGvL~I~lPK 188 (203)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.87 E-value=7.6e-22 Score=144.42 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=73.2
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-CceeeEEEEEEECCCCCCCCcceEEEE-ECCEEEE
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-EESVRRYTIRIELPEKIFKTDQIKAEM-KNGVLKL 184 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL~I 184 (203)
+|.|++++|.|.++|||++++||+|+++++.|+|+|++....++ ....+.|.|+|.||.+| |.++|+|+| +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~V-d~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNV-DQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCCEEEE
Confidence 79999999999999999999999999999999999997644332 23456899999999999 999999999 8999999
Q ss_pred EEec
Q 028809 185 TLPM 188 (203)
Q Consensus 185 ~lPK 188 (203)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.87 E-value=1.8e-21 Score=144.79 Aligned_cols=94 Identities=38% Similarity=0.664 Sum_probs=75.1
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC------CceeeEEEEEEECCCCCCCCcceEEEEECC
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD------EESVRRYTIRIELPEKIFKTDQIKAEMKNG 180 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~F~r~~~LP~~v~d~d~i~A~~~nG 180 (203)
||.|++++|.|.++|||+++++|+|+++++.|+|+|++...... ++.++.|.++|.||.++ |.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEecCC
Confidence 79999999999999999999999999999999999999822222 34568999999999999 999999999999
Q ss_pred EEEEEEeccCCCCC--CCeEEee
Q 028809 181 VLKLTLPMMKEDER--TDVLHIK 201 (203)
Q Consensus 181 vL~I~lPK~~~~~~--~~~i~I~ 201 (203)
+|+|++||....+. ++.|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999877653 5555553
No 7
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.87 E-value=1.3e-21 Score=143.99 Aligned_cols=83 Identities=31% Similarity=0.538 Sum_probs=74.5
Q ss_pred CceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC----------CceeeEEEEEEECCCCCCCCcce
Q 028809 104 PRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD----------EESVRRYTIRIELPEKIFKTDQI 173 (203)
Q Consensus 104 p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~----------e~~~~~F~r~~~LP~~v~d~d~i 173 (203)
+.+||+|++++|+|.++|||+++++|+|+++++.|+|+|+++...+. |+.+++|.|+|.|| ++ +.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v-~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NV-DEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CC-CHHHC
Confidence 35899999999999999999999999999999999999998753221 34578999999999 67 99999
Q ss_pred EEEEECCEEEEEEec
Q 028809 174 KAEMKNGVLKLTLPM 188 (203)
Q Consensus 174 ~A~~~nGvL~I~lPK 188 (203)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=1.2e-21 Score=142.07 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=73.2
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEE-ECCEEEEE
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEM-KNGVLKLT 185 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL~I~ 185 (203)
||.|++++|.|.++|||++|+||+|++++|.|+|+|+++.+. +..+++|.|+|.||.+| |++.|+|+| +||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~v-d~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDV-DPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCc-CHHHeEEEecCCCEEEEE
Confidence 689999999999999999999999999999999999986443 45789999999999999 999999997 99999999
Q ss_pred Eec
Q 028809 186 LPM 188 (203)
Q Consensus 186 lPK 188 (203)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.86 E-value=2.3e-21 Score=140.87 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=72.2
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-CceeeEEEEEEECCCCCCCCcceEEEE-ECCEEEE
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-EESVRRYTIRIELPEKIFKTDQIKAEM-KNGVLKL 184 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL~I 184 (203)
+|.+++++|.|.++|||++++||+|+++++.|+|+|++..+.++ ....+.|.|+|.||.+| |.++|+|+| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEECCCCEEEE
Confidence 47889999999999999999999999999999999997643332 33457899999999999 999999999 7999999
Q ss_pred EEec
Q 028809 185 TLPM 188 (203)
Q Consensus 185 ~lPK 188 (203)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.86 E-value=2.8e-21 Score=140.92 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=72.3
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-CceeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEE
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-EESVRRYTIRIELPEKIFKTDQIKAEMK-NGVLKLT 185 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~F~r~~~LP~~v~d~d~i~A~~~-nGvL~I~ 185 (203)
+.+++++|.|.++|||++++||+|++++|.|+|+|++..+.++ ....+.|.|+|.||.+| |.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADV-DPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHcEEEeCCCCEEEEE
Confidence 5788999999999999999999999999999999987654332 34567899999999999 9999999995 9999999
Q ss_pred Eecc
Q 028809 186 LPMM 189 (203)
Q Consensus 186 lPK~ 189 (203)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9984
No 11
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=5.6e-21 Score=140.57 Aligned_cols=82 Identities=23% Similarity=0.515 Sum_probs=73.1
Q ss_pred CceeEEEcC-CeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-------CceeeEEEEEEECCCCCCCCcceEE
Q 028809 104 PRWAAKVTK-DALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-------EESVRRYTIRIELPEKIFKTDQIKA 175 (203)
Q Consensus 104 p~~di~E~~-~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~F~r~~~LP~~v~d~d~i~A 175 (203)
|++||+|++ ++|+|.++|||++|++|+|.++++.|+|+|+++....+ |+.++.|.|+|.||.++ +. ++|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~v-d~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHV-KV--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCc-eE--Cee
Confidence 679999975 89999999999999999999999999999998876532 34478999999999998 65 499
Q ss_pred EEECCEEEEEEec
Q 028809 176 EMKNGVLKLTLPM 188 (203)
Q Consensus 176 ~~~nGvL~I~lPK 188 (203)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.85 E-value=6.9e-21 Score=139.37 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=73.5
Q ss_pred eeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-CceeeEEEEEEECCCCCCCCcceEEEEE-CCEEE
Q 028809 106 WAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-EESVRRYTIRIELPEKIFKTDQIKAEMK-NGVLK 183 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~F~r~~~LP~~v~d~d~i~A~~~-nGvL~ 183 (203)
.+|+|++++|.|.++|||+++++|+|+++++.|+|+|++..+..+ +...++|.|+|.||..| |.++|+|+|+ ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~v-d~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGV-DPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCC-CHHHcEEEECCCCeEE
Confidence 589999999999999999999999999999999999998654322 34467999999999999 9999999996 99999
Q ss_pred EEEe
Q 028809 184 LTLP 187 (203)
Q Consensus 184 I~lP 187 (203)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.84 E-value=1.8e-20 Score=136.38 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=70.9
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCC-CCceeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEE
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDG-DEESVRRYTIRIELPEKIFKTDQIKAEMK-NGVLKLT 185 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~F~r~~~LP~~v~d~d~i~A~~~-nGvL~I~ 185 (203)
+.-++++|.|.++|||++++||+|++++|.|+|+|++....+ .+...+.|.|+|.||.+| |+++|+|.|+ ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDV-DPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCC-ChhhEEEEecCCCEEEEE
Confidence 345678999999999999999999999999999999865433 245578999999999999 9999999995 9999999
Q ss_pred Eec
Q 028809 186 LPM 188 (203)
Q Consensus 186 lPK 188 (203)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=6.4e-20 Score=133.58 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=69.9
Q ss_pred EEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcC-CCCceeeEEEEEEECCCCCCCCcceEEEE-ECCEEEEEE
Q 028809 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKED-GDEESVRRYTIRIELPEKIFKTDQIKAEM-KNGVLKLTL 186 (203)
Q Consensus 109 ~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~-~~e~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL~I~l 186 (203)
.|++++|.|+++|||++|+||+|+++++.|+|+|++..+. +.+...+.|.|+|.||.+| +.++|+|+| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~V-d~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGV-EHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-chheEEEEEcCCCEEEEEe
Confidence 4678899999999999999999999999999999987653 3344567999999999999 999999998 899999997
Q ss_pred e
Q 028809 187 P 187 (203)
Q Consensus 187 P 187 (203)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.82 E-value=8.3e-20 Score=133.91 Aligned_cols=78 Identities=26% Similarity=0.527 Sum_probs=69.5
Q ss_pred EcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCC-----ceeeEEEEEEECCCCCCCCcceEEEE-ECCEEE
Q 028809 110 VTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDE-----ESVRRYTIRIELPEKIFKTDQIKAEM-KNGVLK 183 (203)
Q Consensus 110 E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e-----~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL~ 183 (203)
+..++|.|.++|||++++||+|++++|.|+|+|++..+.+.+ +.++.|.|+|.||.+| |.+.|+|.| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~V-d~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHV-DPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCc-ChHHeEEEeCCCceEE
Confidence 456899999999999999999999999999999986543322 3468999999999999 999999999 999999
Q ss_pred EEEec
Q 028809 184 LTLPM 188 (203)
Q Consensus 184 I~lPK 188 (203)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.81 E-value=1.3e-19 Score=131.09 Aligned_cols=75 Identities=27% Similarity=0.587 Sum_probs=69.2
Q ss_pred CeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCC-CCceeeEEEEEEECCCCCCCCcceEEEEEC-CEEEEEEec
Q 028809 113 DALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDG-DEESVRRYTIRIELPEKIFKTDQIKAEMKN-GVLKLTLPM 188 (203)
Q Consensus 113 ~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~F~r~~~LP~~v~d~d~i~A~~~n-GvL~I~lPK 188 (203)
++|.|.++||||+++||+|+++++.|+|+|+++.... .+..+++|.|+|.||.+| |.+.++|+|.| |+|+|++||
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCcEEEEEecC
Confidence 6999999999999999999999999999999876544 345678999999999999 99999999998 999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.80 E-value=3.2e-19 Score=130.97 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=68.5
Q ss_pred cCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC----CceeeEEEEEEECCCCCCCCcceEEEEECC-EEEEE
Q 028809 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD----EESVRRYTIRIELPEKIFKTDQIKAEMKNG-VLKLT 185 (203)
Q Consensus 111 ~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~----e~~~~~F~r~~~LP~~v~d~d~i~A~~~nG-vL~I~ 185 (203)
++++|+|.++|||++|+||+|++++|.|+|+|+++.+.++ ++.+++|.|+|.||.+| |.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGV-DEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCc-ChHHcEEEEcCCCEEEEe
Confidence 5689999999999999999999999999999998764332 46789999999999999 999999999777 99998
Q ss_pred Ee
Q 028809 186 LP 187 (203)
Q Consensus 186 lP 187 (203)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 87
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=6.6e-19 Score=126.20 Aligned_cols=81 Identities=38% Similarity=0.668 Sum_probs=74.1
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-------CceeeEEEEEEECCCCCCCCcceEEEEEC
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-------EESVRRYTIRIELPEKIFKTDQIKAEMKN 179 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~F~r~~~LP~~v~d~d~i~A~~~n 179 (203)
++.|++++|.|.++|||+++++|+|++.++.|.|+|++...... +...+.|.|+|.||..+ +.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV-DPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc-CHHHcEEEEeC
Confidence 47889999999999999999999999999999999999865442 34578999999999999 99999999999
Q ss_pred CEEEEEEec
Q 028809 180 GVLKLTLPM 188 (203)
Q Consensus 180 GvL~I~lPK 188 (203)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-18 Score=145.31 Aligned_cols=101 Identities=39% Similarity=0.702 Sum_probs=89.6
Q ss_pred CCCceeEEEcCCeEEEEEECCCCCCCceEEEEECC-EEEEEEeecCcCCC----------CceeeEEEEEEECCCCCCCC
Q 028809 102 LRPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQN-TLVIKGKGGKEDGD----------EESVRRYTIRIELPEKIFKT 170 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~-~L~I~g~~~~~~~~----------e~~~~~F~r~~~LP~~v~d~ 170 (203)
+.+.|+|.|+++.|++.++|||+.+++|+|.++++ +|+|+|++..+.++ ++..+.|.+.|.||+++ +.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv-~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV-DV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccc-cH
Confidence 67889999999999999999999999999999887 79999999876543 45678999999999999 99
Q ss_pred cceEEEEECCEEEEEEeccCCC-CCCCeEEeecC
Q 028809 171 DQIKAEMKNGVLKLTLPMMKED-ERTDVLHIKVE 203 (203)
Q Consensus 171 d~i~A~~~nGvL~I~lPK~~~~-~~~~~i~I~Ie 203 (203)
+.|+|.|+||||+|++||..+. +++++.+|.|.
T Consensus 162 d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 162 DEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 9999999999999999998764 45677777763
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.69 E-value=1.9e-16 Score=117.15 Aligned_cols=80 Identities=16% Similarity=0.365 Sum_probs=71.2
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCC-CceeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEE
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGD-EESVRRYTIRIELPEKIFKTDQIKAEMK-NGVLKLT 185 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~F~r~~~LP~~v~d~d~i~A~~~-nGvL~I~ 185 (203)
+..+++.|.|.+++.||++|||+|++.++.|+|+|+++.+..+ ....+.|.|+|.||.+| |.+.|+|.+. ||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~V-d~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEV-DPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCC-CchhEEEEeCCCCeEEEE
Confidence 3456789999999999999999999999999999998865433 34578999999999999 9999999996 9999999
Q ss_pred Eec
Q 028809 186 LPM 188 (203)
Q Consensus 186 lPK 188 (203)
+|.
T Consensus 89 aP~ 91 (91)
T cd06480 89 APQ 91 (91)
T ss_pred cCC
Confidence 983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-14 Score=119.52 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=83.7
Q ss_pred ceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcC-CCCceeeEEEEEEECCCCCCCCcceEEEE-ECCEE
Q 028809 105 RWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKED-GDEESVRRYTIRIELPEKIFKTDQIKAEM-KNGVL 182 (203)
Q Consensus 105 ~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~-~~e~~~~~F~r~~~LP~~v~d~d~i~A~~-~nGvL 182 (203)
..++..++++|.|.+|+..|.+|+|+|.+.++.|.|+|++++.. +...-.+.|.|+|.||.+| |++.|++.+ .||+|
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~v-dp~~V~S~LS~dGvL 142 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDV-DPTSVTSTLSSDGVL 142 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCC-ChhheEEeeCCCceE
Confidence 46788899999999999999999999999999999999998764 3345689999999999999 999999999 99999
Q ss_pred EEEEeccCCCCC-CCeEEee
Q 028809 183 KLTLPMMKEDER-TDVLHIK 201 (203)
Q Consensus 183 ~I~lPK~~~~~~-~~~i~I~ 201 (203)
+|.+||....+. .+.|.|+
T Consensus 143 tI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 143 TIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEccCCCCcCccceEEeEe
Confidence 999999865543 4555554
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.58 E-value=2.6e-14 Score=98.51 Aligned_cols=80 Identities=40% Similarity=0.671 Sum_probs=73.1
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|.++++.|.|++++||+.+++|+|.+.++.|.|+|........+...+.|.+.+.||..+ +++.++|.|.+|+|.|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV-DPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCc-CHHHCEEEEECCEEEEEEc
Confidence 467889999999999999999999999999999999876555555678999999999999 9999999999999999999
Q ss_pred c
Q 028809 188 M 188 (203)
Q Consensus 188 K 188 (203)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.35 E-value=6.6e-12 Score=88.83 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=65.7
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|.++++.+.|.+++||+.+++++|.++++.|.|++. .|.+.+.||..| +++.++|++.+|.|.|+|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~------------~~~~~~~l~~~I-~~e~~~~~~~~~~l~i~L~ 67 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP------------PYLFELDLAAPI-DDEKSSAKIGNGVLVFTLV 67 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcCC------------CEEEEEeCcccc-cccccEEEEeCCEEEEEEE
Confidence 467889999999999999999999999999999882 589999999999 9999999999999999999
Q ss_pred ccCC
Q 028809 188 MMKE 191 (203)
Q Consensus 188 K~~~ 191 (203)
|.++
T Consensus 68 K~~~ 71 (78)
T cd06469 68 KKEP 71 (78)
T ss_pred eCCC
Confidence 9753
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.07 E-value=1.6e-09 Score=76.19 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=68.0
Q ss_pred EEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 108 i~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
+.++++.+.|.+.+||..+++++|.+.++.|.|++... ....|...+.|+..| +++..++++++|.|.|+|+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~l~i~L~ 72 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-------GGKEYLLEGELFGPI-DPEESKWTVEDRKIEITLK 72 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-------CCCceEEeeEccCcc-chhhcEEEEeCCEEEEEEE
Confidence 35788999999999999999999999999999999743 234788999999999 9999999999999999999
Q ss_pred ccCC
Q 028809 188 MMKE 191 (203)
Q Consensus 188 K~~~ 191 (203)
|..+
T Consensus 73 K~~~ 76 (84)
T cd06463 73 KKEP 76 (84)
T ss_pred ECCC
Confidence 9764
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.03 E-value=2.3e-09 Score=87.88 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=64.3
Q ss_pred CCCceeEEEcCC-eEEEEEECCCCCCCc-eEEEEEC--CEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEE
Q 028809 102 LRPRWAAKVTKD-ALNLSVDMPGLAKED-VRVSLEQ--NTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEM 177 (203)
Q Consensus 102 ~~p~~di~E~~~-~y~i~vdLPGv~ked-I~V~v~~--~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~ 177 (203)
..+.+++.+.++ +++|.++|||+++++ |+|.++. +.|+|+.. .+|.+++.||.. +++.++|+|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-----------~~~~krv~L~~~--~~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-----------EKYLKRVALPWP--DPEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-----------CceEeeEecCCC--ccceeeEEE
Confidence 356789998777 699999999999888 9999984 66666544 257899999976 479999999
Q ss_pred ECCEEEEEEeccCCC
Q 028809 178 KNGVLKLTLPMMKED 192 (203)
Q Consensus 178 ~nGvL~I~lPK~~~~ 192 (203)
+||||+|++-+.++.
T Consensus 157 nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 157 NNGILEIRIRRTEES 171 (177)
T ss_pred eCceEEEEEeecCCC
Confidence 999999999887543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.86 E-value=1.6e-08 Score=72.18 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=68.7
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTL 186 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~l 186 (203)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|...+.|+..| +++..++.+.+|.|.|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~vei~L 72 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPI-DPEQSKVSVLPTKVEITL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEeccccccc-CchhcEEEEeCeEEEEEE
Confidence 578899999999999999999999999999999988742 223788899999999 999999999999999999
Q ss_pred eccCC
Q 028809 187 PMMKE 191 (203)
Q Consensus 187 PK~~~ 191 (203)
.|..+
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99754
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.59 E-value=2.4e-06 Score=59.36 Aligned_cols=77 Identities=26% Similarity=0.439 Sum_probs=66.3
Q ss_pred CceeEEEcCCeEEEEEECCCC--CCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCE
Q 028809 104 PRWAAKVTKDALNLSVDMPGL--AKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGV 181 (203)
Q Consensus 104 p~~di~E~~~~y~i~vdLPGv--~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGv 181 (203)
|.++|.++++.+.|.+.+++. ++++|+|.+.++.|.|+...... ..|.-.+.|...| +++..++.+.++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I-~~~~s~~~~~~~~ 72 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEI-DPDESTWKVKDNK 72 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-B-ECCCEEEEEETTE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeE-cchhcEEEEECCE
Confidence 578999999999999999665 49999999999999999764321 4788889999999 9999999999999
Q ss_pred EEEEEec
Q 028809 182 LKLTLPM 188 (203)
Q Consensus 182 L~I~lPK 188 (203)
|.|+|.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.33 E-value=1e-05 Score=60.94 Aligned_cols=78 Identities=22% Similarity=0.431 Sum_probs=68.7
Q ss_pred CceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEE
Q 028809 104 PRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLK 183 (203)
Q Consensus 104 p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~ 183 (203)
|+++++++.+.+.|.+.+||. ++++|.+..+.|.|++.... ....|.-.+.|...| +++..+.++.++.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~------~~~~y~~~~~L~~~I-~pe~s~~~v~~~kve 71 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG------GGKKYEFDLEFYKEI-DPEESKYKVTGRQIE 71 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC------CCeeEEEEeEhhhhc-cccccEEEecCCeEE
Confidence 578999999999999999998 88999999999999986421 223578888999999 999999999999999
Q ss_pred EEEeccC
Q 028809 184 LTLPMMK 190 (203)
Q Consensus 184 I~lPK~~ 190 (203)
|+|.|..
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999976
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.12 E-value=2.6e-05 Score=55.95 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=66.2
Q ss_pred eEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028809 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTL 186 (203)
Q Consensus 107 di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~l 186 (203)
|++++++.+.|.+.++|+.+++++|.+.++.|.+++... ....|.-.+.|...| +++..+.+...+-+.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~-------~~~~y~~~~~L~~~I-~p~~s~~~v~~~kiei~L 72 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP-------SGNDYSLKLHLLHPI-VPEQSSYKILSTKIEIKL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC-------CCCcEEEeeecCcee-cchhcEEEEeCcEEEEEE
Confidence 578899999999999999999999999999999998742 112577888999999 899999999999999999
Q ss_pred eccC
Q 028809 187 PMMK 190 (203)
Q Consensus 187 PK~~ 190 (203)
.|..
T Consensus 73 ~K~~ 76 (84)
T cd06489 73 KKTE 76 (84)
T ss_pred EcCC
Confidence 9974
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.08 E-value=1.7e-05 Score=69.87 Aligned_cols=65 Identities=25% Similarity=0.558 Sum_probs=59.4
Q ss_pred CCeEEEEEECCCC-CCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEE--ECCEEEEEEe
Q 028809 112 KDALNLSVDMPGL-AKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEM--KNGVLKLTLP 187 (203)
Q Consensus 112 ~~~y~i~vdLPGv-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~--~nGvL~I~lP 187 (203)
.+.++|++.|||+ +..+|+|.|.+..|.|..... .|.-.+.||..| +.+..+|+| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V-~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPV-DEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcc-cCCCceEEEccCCCEEEEEEE
Confidence 5789999999999 889999999999999998732 688899999999 999999999 6699999998
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.01 E-value=6.7e-05 Score=53.51 Aligned_cols=75 Identities=27% Similarity=0.427 Sum_probs=62.6
Q ss_pred eeEEEcCCeEEEEEECC-CCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEEC-CEEE
Q 028809 106 WAAKVTKDALNLSVDMP-GLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKN-GVLK 183 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~n-GvL~ 183 (203)
+.+.++++.+.|.+.+| |+.+++|+|.+.++.|.|+.... .+.-.-.|...| +++.....+.+ ..|.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~----------~~~l~~~L~~~I-~~~~s~w~~~~~~~v~ 69 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG----------EPLLDGELYAKV-KVDESTWTLEDGKLLE 69 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC----------CceEcCcccCce-eEcCCEEEEeCCCEEE
Confidence 36789999999999997 78999999999999999987521 122233689999 99999999999 9999
Q ss_pred EEEeccCC
Q 028809 184 LTLPMMKE 191 (203)
Q Consensus 184 I~lPK~~~ 191 (203)
|+|+|.++
T Consensus 70 i~L~K~~~ 77 (85)
T cd06467 70 ITLEKRNE 77 (85)
T ss_pred EEEEECCC
Confidence 99999854
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.95 E-value=0.00019 Score=52.12 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=67.0
Q ss_pred ceeEEEcCCeEEEEEECCCCCC---CceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEE-CCCCCCCCcceEEEEECC
Q 028809 105 RWAAKVTKDALNLSVDMPGLAK---EDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIE-LPEKIFKTDQIKAEMKNG 180 (203)
Q Consensus 105 ~~di~E~~~~y~i~vdLPGv~k---edI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~-LP~~v~d~d~i~A~~~nG 180 (203)
.+++.++++.+.|.+.+|+..+ ++++|.+..+.|.|++... ....|.-.+. |-..| +++..+.....+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~-------~~~~~~~~~~~L~~~I-~~e~s~~~~~~~ 74 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDL-------NGKNYRFTINRLLKKI-DPEKSSFKVKTD 74 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECC-------CCcEEEEEehHhhCcc-CccccEEEEeCC
Confidence 4789999999999999999976 9999999999999998531 1125666665 99999 999999999999
Q ss_pred EEEEEEeccCC
Q 028809 181 VLKLTLPMMKE 191 (203)
Q Consensus 181 vL~I~lPK~~~ 191 (203)
-+.|+|.|.++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.90 E-value=0.00018 Score=51.86 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=61.8
Q ss_pred eeEEEcCCeEEEEEECC-CCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECC-EEE
Q 028809 106 WAAKVTKDALNLSVDMP-GLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNG-VLK 183 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nG-vL~ 183 (203)
+++.++.+.+.|.+.+| |+.++||+|++..+.|.|...... .+ -.-.|...| +++...-.+++| .|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~---------~~-~~g~L~~~I-~~d~Stw~i~~~~~l~ 69 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQA---------PL-LEGKLYSSI-DHESSTWIIKENKSLE 69 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCC---------eE-EeCcccCcc-cccCcEEEEeCCCEEE
Confidence 46789999999999996 999999999999999999763110 12 233789999 999999998777 799
Q ss_pred EEEeccCCC
Q 028809 184 LTLPMMKED 192 (203)
Q Consensus 184 I~lPK~~~~ 192 (203)
|+|.|.++.
T Consensus 70 i~L~K~~~~ 78 (85)
T cd06493 70 VSLIKKDEG 78 (85)
T ss_pred EEEEECCCC
Confidence 999997643
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.86 E-value=0.00027 Score=51.31 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=68.4
Q ss_pred ceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEE
Q 028809 105 RWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKL 184 (203)
Q Consensus 105 ~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I 184 (203)
.+|++++++.+.|.+.+.|+.++++.|.++++.|.|...... ...|.-.+.|-..| +++..+.....+-+.|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I-~~~~s~~~v~~~kvei 73 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVI-DVEKSSVNMLPTKVEI 73 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceE-ChhHcEEEecCcEEEE
Confidence 378999999999999999999999999999999988765321 22588888999999 8999998999999999
Q ss_pred EEeccCC
Q 028809 185 TLPMMKE 191 (203)
Q Consensus 185 ~lPK~~~ 191 (203)
++.|.++
T Consensus 74 ~L~K~~~ 80 (87)
T cd06488 74 KLRKAEP 80 (87)
T ss_pred EEEeCCC
Confidence 9999753
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.58 E-value=0.00087 Score=49.67 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=63.2
Q ss_pred CCceeEEEcCCeEEEEEECC-CCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCE
Q 028809 103 RPRWAAKVTKDALNLSVDMP-GLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGV 181 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGv 181 (203)
.+.+.+.++.+.+.|.+.+| |+.+.||+|.+..+.|.|..... --+.. .|...| +++...-.+++|-
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~---------~~l~G--~L~~~I-~~destWtled~k 72 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ---------EVLKG--KLFDSV-VADECTWTLEDRK 72 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE---------EEEcC--cccCcc-CcccCEEEEECCc
Confidence 45689999999999999997 89999999999999999986321 01111 789999 9999999998885
Q ss_pred -EEEEEeccC
Q 028809 182 -LKLTLPMMK 190 (203)
Q Consensus 182 -L~I~lPK~~ 190 (203)
|.|.|.|..
T Consensus 73 ~l~I~L~K~~ 82 (93)
T cd06494 73 LIRIVLTKSN 82 (93)
T ss_pred EEEEEEEeCC
Confidence 899999974
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.44 E-value=0.0034 Score=47.59 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=64.4
Q ss_pred CceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEE
Q 028809 104 PRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLK 183 (203)
Q Consensus 104 p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~ 183 (203)
|.+++.+..+.+.|++.+|+ .++++|.++++.|+++|... ....|.-.+.|=..| +++..+.....--+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-------~g~~y~~~l~l~~~I-~pe~Sk~~v~~r~ve 71 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-------DNVKIYNEIELYDRV-DPNDSKHKRTDRSIL 71 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-------CCcEEEEEEEeeccc-CcccCeEEeCCceEE
Confidence 67899999999999999999 58999999999999998532 112466778898998 889888777777888
Q ss_pred EEEeccCC
Q 028809 184 LTLPMMKE 191 (203)
Q Consensus 184 I~lPK~~~ 191 (203)
|.|.|.++
T Consensus 72 ~~L~K~~~ 79 (106)
T cd00237 72 CCLRKGKE 79 (106)
T ss_pred EEEEeCCC
Confidence 89999754
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.86 E-value=0.0083 Score=54.13 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=68.5
Q ss_pred CCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028809 103 RPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVL 182 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL 182 (203)
.+..||+++++.++|.|.+.|+.++++.|.+.++.|.|+..... ...|...+.|-..| +++..+.+..-.-+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~~~L~~~I-~p~~s~~~v~~~Ki 227 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG-------EDAYHLQPRLFGKI-IPDKCKYEVLSTKI 227 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC-------Ccceeecccccccc-cccccEEEEecceE
Confidence 35689999999999999999999999999999999999875421 12466678999999 99999999988899
Q ss_pred EEEEeccC
Q 028809 183 KLTLPMMK 190 (203)
Q Consensus 183 ~I~lPK~~ 190 (203)
.|+|.|..
T Consensus 228 ei~l~K~~ 235 (356)
T PLN03088 228 EIRLAKAE 235 (356)
T ss_pred EEEEecCC
Confidence 99998875
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.63 E-value=0.032 Score=40.61 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=58.2
Q ss_pred eEEEcCCeEEEEEECC-C--CCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECC-EE
Q 028809 107 AAKVTKDALNLSVDMP-G--LAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNG-VL 182 (203)
Q Consensus 107 di~E~~~~y~i~vdLP-G--v~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nG-vL 182 (203)
.+.++.++..|.+.+| | .++.+|+|.+..+.|.|....... -+.. .|...| +++...-.+++| .|
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~--------~i~G--~L~~~V-~~des~Wtled~~~l 70 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPP--------IIDG--ELYNEV-KVEESSWLIEDGKVV 70 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCce--------EEeC--cccCcc-cccccEEEEeCCCEE
Confidence 3567888999999996 3 889999999999999987643110 1122 788898 999999999986 89
Q ss_pred EEEEeccCC
Q 028809 183 KLTLPMMKE 191 (203)
Q Consensus 183 ~I~lPK~~~ 191 (203)
.|+|-|..+
T Consensus 71 ~i~L~K~~~ 79 (87)
T cd06492 71 TVNLEKINK 79 (87)
T ss_pred EEEEEECCC
Confidence 999999753
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.60 E-value=0.047 Score=39.60 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=57.6
Q ss_pred eeEEEcCCeEEEEEECCC--CCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEE--ECCE
Q 028809 106 WAAKVTKDALNLSVDMPG--LAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEM--KNGV 181 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLPG--v~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~--~nGv 181 (203)
+||+++++.++|.+...+ ..++++.+....+.|.|+-... ...|...+.|=..| +++. +.++ .-|-
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--------~~~~~~~~~L~~~I-~~~~-~~~~~~~~~K 70 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--------DKSYLLHLDLSNEV-QWPC-EVRISTETGK 70 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--------CceEEEeeeccccC-CCCc-EEEEcccCce
Confidence 489999999999999885 5556666766777899886532 11478888999998 7764 5555 4889
Q ss_pred EEEEEeccCC
Q 028809 182 LKLTLPMMKE 191 (203)
Q Consensus 182 L~I~lPK~~~ 191 (203)
+.|+|.|.++
T Consensus 71 VEI~L~K~e~ 80 (87)
T cd06490 71 IELVLKKKEP 80 (87)
T ss_pred EEEEEEcCCC
Confidence 9999999753
No 40
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.58 E-value=0.0097 Score=49.29 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=64.0
Q ss_pred CCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028809 103 RPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVL 182 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL 182 (203)
.+.+|+++++..++|.+-.+|+.++++.|.+.++.|.|..+.+.. ..|.-...|-..| .++..+-+.----+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g-------~~~~l~~~L~~~I-~pe~~s~k~~stKV 74 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG-------SEYNLQLKLYHEI-IPEKSSFKVFSTKV 74 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc-------hhhhhhHHhcccc-cccceeeEeeeeeE
Confidence 456899999999999999999999999999999999988775421 2455555577777 78887777777788
Q ss_pred EEEEecc
Q 028809 183 KLTLPMM 189 (203)
Q Consensus 183 ~I~lPK~ 189 (203)
.|+|+|.
T Consensus 75 EI~L~K~ 81 (196)
T KOG1309|consen 75 EITLAKA 81 (196)
T ss_pred EEEeccc
Confidence 8888884
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.47 E-value=0.08 Score=39.86 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCCceeEEEcCCeEEEEEECC-CC-CCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEEC
Q 028809 102 LRPRWAAKVTKDALNLSVDMP-GL-AKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKN 179 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~vdLP-Gv-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~n 179 (203)
....|.+.++-+.+.|.+.+| |. +..+|+|.+..+.|.|.-...... .--+.. .|+..| +.+...-.+++
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~-----~~~i~G--~L~~~V-~~des~Wtled 74 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE-----KVLMEG--EFTHKI-NTENSLWSLEP 74 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC-----ceEEeC--cccCcc-cCccceEEEeC
Confidence 356799999999999999999 54 678999999999999887521000 001112 689999 99999999999
Q ss_pred C-EEEEEEeccC
Q 028809 180 G-VLKLTLPMMK 190 (203)
Q Consensus 180 G-vL~I~lPK~~ 190 (203)
| .|.|+|-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 6 4899999974
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=1.9 Score=35.60 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=62.0
Q ss_pred CCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028809 103 RPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVL 182 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL 182 (203)
.|.+-|.+..+-+++++.++- ..+.+|.++...|+++|.... -...|...|.|=..| +++.++-+-. +-+
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~------d~~~~~~~ief~~eI-dpe~sk~k~~-~r~ 76 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGA------DNHKYENEIEFFDEI-DPEKSKHKRT-SRS 76 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCC------CceeeEEeeehhhhc-CHhhcccccc-ceE
Confidence 567888888999999999874 567778888889999998642 233677779999999 9998887776 767
Q ss_pred EEEEeccCCC
Q 028809 183 KLTLPMMKED 192 (203)
Q Consensus 183 ~I~lPK~~~~ 192 (203)
...++++++.
T Consensus 77 if~i~~K~e~ 86 (180)
T KOG3158|consen 77 IFCILRKKEL 86 (180)
T ss_pred EEEEEEcccc
Confidence 7777665543
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=84.02 E-value=8 Score=32.03 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=59.5
Q ss_pred CCceeEEEcCCeEEEEEECC-CC-CCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECC
Q 028809 103 RPRWAAKVTKDALNLSVDMP-GL-AKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNG 180 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLP-Gv-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nG 180 (203)
.+.+.|..+=..+.|.+.+| |+ +..+|.+.+....|.|.-...... -.=.|...| +.+.....+++|
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~i----------ldG~L~~~v-k~des~WtiEd~ 86 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPI----------LDGELSHSV-KVDESTWTIEDG 86 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCce----------ecCcccccc-ccccceEEecCC
Confidence 56788889889999998885 87 888999999888887776543211 011578888 899999999999
Q ss_pred EEEEEEeccCC
Q 028809 181 VLKLTLPMMKE 191 (203)
Q Consensus 181 vL~I~lPK~~~ 191 (203)
.+.|.+-++..
T Consensus 87 k~i~i~l~K~~ 97 (179)
T KOG2265|consen 87 KMIVILLKKSN 97 (179)
T ss_pred EEEEEEeeccc
Confidence 88877766543
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=81.90 E-value=19 Score=27.95 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=49.9
Q ss_pred ceeEEEcCC-eEEEEEECCCCCCCceEEEEECCEEEEEEeecCcC-CCCc--e--eeEEEEEEECCCCCCCCcceEEEEE
Q 028809 105 RWAAKVTKD-ALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKED-GDEE--S--VRRYTIRIELPEKIFKTDQIKAEMK 178 (203)
Q Consensus 105 ~~di~E~~~-~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~-~~e~--~--~~~F~r~~~LP~~v~d~d~i~A~~~ 178 (203)
.+.|...++ .+.++. ..+.++++.++++|.|+.+..... .... . ...-.-.+.||... ..+.++..-.
T Consensus 67 ~V~I~~~~~~~i~v~~-----~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~-~l~~i~i~~~ 140 (166)
T PF13349_consen 67 DVEIKPSDDDKIKVEY-----NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDY-KLDKIDIKTS 140 (166)
T ss_pred eEEEEEcCCccEEEEE-----cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCC-ceeEEEEEec
Confidence 477777654 344444 222689999999999998832211 1110 0 12345578899987 7789999999
Q ss_pred CCEEEEEE
Q 028809 179 NGVLKLTL 186 (203)
Q Consensus 179 nGvL~I~l 186 (203)
+|-+.|.=
T Consensus 141 ~G~i~i~~ 148 (166)
T PF13349_consen 141 SGDITIED 148 (166)
T ss_pred cccEEEEc
Confidence 99888754
No 45
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=78.67 E-value=1.1 Score=39.82 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=63.9
Q ss_pred CCCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCE
Q 028809 102 LRPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGV 181 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGv 181 (203)
..-.|++.++.....|-+.-|-++.|+|.+.+++|+|.|+-+-+. ..--|.-.+.|-..| .++...-+.--.+
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~------~~~~~~~~~~Ly~ev-~P~~~s~k~fsK~ 247 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRR------LRLWNDITISLYKEV-YPDIRSIKSFSKR 247 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccc------cchHHHhhhhhhhhc-Ccchhhhhhcchh
Confidence 345688889999999999999999999999999999999987432 222445567788888 7887777766678
Q ss_pred EEEEEeccC
Q 028809 182 LKLTLPMMK 190 (203)
Q Consensus 182 L~I~lPK~~ 190 (203)
+.|++-|+.
T Consensus 248 ~e~~l~KV~ 256 (368)
T COG5091 248 VEVHLRKVE 256 (368)
T ss_pred heehhhhhh
Confidence 888887764
No 46
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=77.42 E-value=11 Score=33.19 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=69.4
Q ss_pred ceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEE
Q 028809 105 RWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKL 184 (203)
Q Consensus 105 ~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I 184 (203)
..||..++..++|.|..-|.-++--.|...+..|.|...... ...+|...+.|=.-| +.++..+.|-.--+.|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~------gna~fd~d~kLwgvv-nve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF------GNASFDLDYKLWGVV-NVEESSVVMGETKVEI 288 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC------CCceeeccceeeeee-chhhceEEeecceEEE
Confidence 468999999999999999999999999999988888877532 345888888888877 9999999999999999
Q ss_pred EEeccCCC
Q 028809 185 TLPMMKED 192 (203)
Q Consensus 185 ~lPK~~~~ 192 (203)
+|+|.++.
T Consensus 289 sl~k~ep~ 296 (320)
T KOG1667|consen 289 SLKKAEPG 296 (320)
T ss_pred EEeccCCC
Confidence 99998654
No 47
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=72.51 E-value=9.8 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK 188 (203)
|+.++|+++++.++++|... ..++.||..+ .++...+++.+.+....
T Consensus 2 P~gV~v~~~~~~i~v~G~~g------------~l~~~~~~~v----~v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG------------ELSRPIPPGV----KVEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETTEEEEESSSS------------EEEEEETTTE----EEEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE------------eEEEECCCCe----eEEEEcCCCceEEEECc
Confidence 57899999999999999843 3566777654 13444678877777653
No 48
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=72.06 E-value=7 Score=27.97 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=26.8
Q ss_pred CeEEEEEECCCCCCCceEEEEECCEEEEEE
Q 028809 113 DALNLSVDMPGLAKEDVRVSLEQNTLVIKG 142 (203)
Q Consensus 113 ~~y~i~vdLPGv~kedI~V~v~~~~L~I~g 142 (203)
+.|.-.+.||.++++.++-.+++|.|+|..
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 567777899999999999999999999975
No 49
>PF14913 DPCD: DPCD protein family
Probab=70.36 E-value=38 Score=28.44 Aligned_cols=76 Identities=14% Similarity=0.362 Sum_probs=57.1
Q ss_pred CCCceeEEEcCCeEEEEE-ECCCCCCCceEEEEEC--CEEEEEEeecCcCCCCceeeEEEEEEECCCC------CCCCcc
Q 028809 102 LRPRWAAKVTKDALNLSV-DMPGLAKEDVRVSLEQ--NTLVIKGKGGKEDGDEESVRRYTIRIELPEK------IFKTDQ 172 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~v-dLPGv~kedI~V~v~~--~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~------v~d~d~ 172 (203)
..|-+-=..+...|.-++ .||. .++--+|++++ +.++|+-.-+ +|-++|.+|+- . +.+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK----------KYyKk~~IPDl~R~~l~l-~~~~ 152 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK----------KYYKKFSIPDLDRCGLPL-EQSA 152 (194)
T ss_pred CCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc----------cceeEecCCcHHhhCCCc-chhh
Confidence 456666677788899998 6775 77878888865 6688886532 78888888852 2 4567
Q ss_pred eEEEEECCEEEEEEecc
Q 028809 173 IKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 173 i~A~~~nGvL~I~lPK~ 189 (203)
++..+.|..|.|+..|.
T Consensus 153 ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 153 LSFAHQNNTLIISYKKP 169 (194)
T ss_pred ceeeeecCeEEEEecCc
Confidence 88888999999999874
No 50
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=70.25 E-value=12 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
.|.-...||. + +.++|+-++++|.|+|..-+..
T Consensus 9 ~~~v~adlPG-~-~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVCG-F-EPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEec
Confidence 6777778995 5 8999999999999999998754
No 51
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=69.11 E-value=16 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=29.0
Q ss_pred CeEEEEEECCC-CCCCceEEEEECCEEEEEEeec
Q 028809 113 DALNLSVDMPG-LAKEDVRVSLEQNTLVIKGKGG 145 (203)
Q Consensus 113 ~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~~~ 145 (203)
+.|.+.++||+ +++++.+..+.++.|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56889999987 6999999999999999997764
No 52
>PRK10743 heat shock protein IbpA; Provisional
Probab=67.73 E-value=22 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=25.4
Q ss_pred EEEEEECCCCCCCCcceEEEEECCEEEEEEeccCC
Q 028809 157 YTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKE 191 (203)
Q Consensus 157 F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~~ 191 (203)
|.-...||. + +.+.|+-++++|+|+|..-+..+
T Consensus 47 ~~v~aelPG-v-~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVAG-F-AESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECCC-C-CHHHeEEEEECCEEEEEEEECcc
Confidence 333345885 5 89999999999999999876543
No 53
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=67.55 E-value=18 Score=30.39 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=56.7
Q ss_pred eeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEE-ECCCCCCCCcceEEEEECCEEEE
Q 028809 106 WAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRI-ELPEKIFKTDQIKAEMKNGVLKL 184 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~-~LP~~v~d~d~i~A~~~nGvL~I 184 (203)
+-|-++++.+.+-+.|-|+..|+|+|.+..+.|-|....- ....|.-.+ .|-..+ +++..+-..+-....|
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dl-------qGK~y~~~vnnLlk~I-~vEks~~kvKtd~v~I 148 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDL-------QGKNYRMIVNNLLKPI-SVEKSSKKVKTDTVLI 148 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeec-------CCcceeeehhhhcccc-ChhhcccccccceEEE
Confidence 4566778889999999999999999999999888876532 122455444 355566 7788777787777778
Q ss_pred EEeccC
Q 028809 185 TLPMMK 190 (203)
Q Consensus 185 ~lPK~~ 190 (203)
.+.|.+
T Consensus 149 ~~kkVe 154 (224)
T KOG3260|consen 149 LCKKVE 154 (224)
T ss_pred eehhhh
Confidence 886654
No 54
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.75 E-value=12 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.0
Q ss_pred cCCeEEEEEECC-CCCCCceEEEEECCEEEEEEe
Q 028809 111 TKDALNLSVDMP-GLAKEDVRVSLEQNTLVIKGK 143 (203)
Q Consensus 111 ~~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g~ 143 (203)
....|.-++.|| +++.+.++..+.+|.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 357899999999 689999999999999999864
No 55
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=66.50 E-value=15 Score=26.42 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCeEEEEEECC-CCCCCceEEEEECCEEEEEEeecCcC
Q 028809 112 KDALNLSVDMP-GLAKEDVRVSLEQNTLVIKGKGGKED 148 (203)
Q Consensus 112 ~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g~~~~~~ 148 (203)
...|.-.+.|| +++.+.|+-.+++|.|+|+..+....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred cceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 35778889998 68999999999999999999877654
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=65.47 E-value=24 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=28.7
Q ss_pred eEEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028809 155 RRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 155 ~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~ 189 (203)
..|.-.+.||. + +++.|+.+++||.|+|..-+.
T Consensus 7 d~y~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVCH-F-TPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 37888899997 3 899999999999999998764
No 57
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=65.19 E-value=12 Score=26.83 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCeEEEEEECC-CCCCCceEEEEECCEEEEEE
Q 028809 112 KDALNLSVDMP-GLAKEDVRVSLEQNTLVIKG 142 (203)
Q Consensus 112 ~~~y~i~vdLP-Gv~kedI~V~v~~~~L~I~g 142 (203)
...|.-.+.|| +++.+.|+-.+++|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 46899999999 68999999999999999975
No 58
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=64.28 E-value=35 Score=24.48 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=29.7
Q ss_pred eEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 155 RRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 155 ~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
..|.-.+.||. + +++.|+-++++|.|+|+.-+..
T Consensus 7 ~~~~v~~dlpG-~-~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 7 PMFQILLDVVQ-F-RPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred ceEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 47888999997 3 8999999999999999997754
No 59
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=64.06 E-value=30 Score=24.49 Aligned_cols=32 Identities=3% Similarity=0.303 Sum_probs=28.0
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~ 189 (203)
.|.-.+.||. + +++.|+-++.+|.|+|..-+.
T Consensus 8 ~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVKH-F-SPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 7888889995 5 899999999999999998654
No 60
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=62.58 E-value=19 Score=25.23 Aligned_cols=35 Identities=9% Similarity=0.315 Sum_probs=30.5
Q ss_pred eEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCC
Q 028809 155 RRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKE 191 (203)
Q Consensus 155 ~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~~ 191 (203)
..|.-.+.||. + .+++|+-.++++.|+|...+...
T Consensus 7 ~~~~v~~dlpG-~-~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVKG-F-KPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECCC-C-CHHHcEEEEECCEEEEEEEEeee
Confidence 37889999997 5 89999999999999999987643
No 61
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=62.12 E-value=17 Score=23.57 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCeEEEEEECCC-CCCCceEEEEECCEEEEEEe
Q 028809 112 KDALNLSVDMPG-LAKEDVRVSLEQNTLVIKGK 143 (203)
Q Consensus 112 ~~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~ 143 (203)
...|...+.||+ ++++.++..+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 468999999997 68899999999999999754
No 62
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=61.48 E-value=35 Score=24.36 Aligned_cols=32 Identities=6% Similarity=0.284 Sum_probs=28.0
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~ 189 (203)
.|.-.+.||. + +++.|+-+.++|+|+|..-+.
T Consensus 11 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVKH-F-SPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 7888889997 4 899999999999999998654
No 63
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=60.44 E-value=17 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCCCCCceEEEEECCEEEEEEeecCc
Q 028809 122 PGLAKEDVRVSLEQNTLVIKGKGGKE 147 (203)
Q Consensus 122 PGv~kedI~V~v~~~~L~I~g~~~~~ 147 (203)
++++..+|+|.+.++.++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 46777799999999999999997543
No 64
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=60.18 E-value=35 Score=27.04 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=25.9
Q ss_pred EEEEEECCCCCCCCcceEEEEECCEEEEEEeccCC
Q 028809 157 YTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKE 191 (203)
Q Consensus 157 F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~~ 191 (203)
|.-.+.||. + +.+.|+-.+++|.|+|..-+..+
T Consensus 45 y~v~adlPG-v-~kedi~V~v~~~~LtI~ge~~~~ 77 (142)
T PRK11597 45 YRITLALAG-F-RQEDLDIQLEGTRLTVKGTPEQP 77 (142)
T ss_pred EEEEEEeCC-C-CHHHeEEEEECCEEEEEEEEccc
Confidence 444456885 5 89999999999999999976543
No 65
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=58.31 E-value=29 Score=24.72 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
.|.-.+.||. + +++.|+-+.++|.|+|..-|..
T Consensus 9 ~~~v~~dlpG-~-~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVSD-F-SPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEec
Confidence 7888899996 5 8999999999999999987643
No 66
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=58.19 E-value=36 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=34.1
Q ss_pred CCCceeEEEcCCeEEEEEECCCC-----CCCceEEEEECCEEEEEEe
Q 028809 102 LRPRWAAKVTKDALNLSVDMPGL-----AKEDVRVSLEQNTLVIKGK 143 (203)
Q Consensus 102 ~~p~~di~E~~~~y~i~vdLPGv-----~kedI~V~v~~~~L~I~g~ 143 (203)
..|.+.|+++++.|.|.+--+.- .++...|+-+++.|-|.-.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~g 70 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIETG 70 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEecC
Confidence 47999999999999999866553 7778888888888888754
No 67
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=56.49 E-value=33 Score=24.55 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCCC
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKED 192 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~~~ 192 (203)
.|.-.+.||. + +.+.|+-.+++|.|+|...+..+.
T Consensus 12 ~~~v~~~lPG-~-~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVAG-F-SEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEcccc
Confidence 7788889996 5 899999999999999998775443
No 68
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=56.36 E-value=25 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.4
Q ss_pred CeEEEEEECC-CCCCCceEEEEE-CCEEEEEEe
Q 028809 113 DALNLSVDMP-GLAKEDVRVSLE-QNTLVIKGK 143 (203)
Q Consensus 113 ~~y~i~vdLP-Gv~kedI~V~v~-~~~L~I~g~ 143 (203)
..|.=++.|| +++.+.|+-.+. +|.|+|++-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 5778889998 899999999997 899999873
No 69
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=55.49 E-value=35 Score=22.81 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCeEEEEEECCC-CCCCceEEEEECCEEEEEEeecCc
Q 028809 112 KDALNLSVDMPG-LAKEDVRVSLEQNTLVIKGKGGKE 147 (203)
Q Consensus 112 ~~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~~~~~ 147 (203)
+..|.+.++|++ +++++....+.++.|.|.-.+...
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 467999999987 688999999999999999876543
No 70
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=53.69 E-value=40 Score=24.14 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=29.4
Q ss_pred eEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 155 RRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 155 ~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
..|.-.+.||. + +++.|+-+++++.|+|..-+..
T Consensus 7 d~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVRG-F-SPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECCC-C-ChHHeEEEEECCEEEEEEEEee
Confidence 37888999997 3 7999999999999999997653
No 71
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=52.75 E-value=55 Score=27.24 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|++|+|+++++.++|+|... +..+ .||..- ..+....+||.|.|.-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G----------~L~~--~~~~~~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG----------ELTR--SFRHLP---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc----------eEEE--EecCCC---ceEEEEeCCCEEEEEeC
Confidence 78999999999999999853 3333 444321 34677778998777754
No 72
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=52.05 E-value=62 Score=23.23 Aligned_cols=62 Identities=19% Similarity=0.390 Sum_probs=35.3
Q ss_pred EEEECCCCCCCce-----------------EEEE---ECCEEEEEEeecCcCCCCceeeEEEEEE-ECCCCCCCCcceEE
Q 028809 117 LSVDMPGLAKEDV-----------------RVSL---EQNTLVIKGKGGKEDGDEESVRRYTIRI-ELPEKIFKTDQIKA 175 (203)
Q Consensus 117 i~vdLPGv~kedI-----------------~V~v---~~~~L~I~g~~~~~~~~e~~~~~F~r~~-~LP~~v~d~d~i~A 175 (203)
-.+++||.++++| .|.. ++|.|+.+|... -.|...+ .|...- =.=.+++
T Consensus 3 ~~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~~---------~~f~~~~ls~~~~~-i~y~l~i 72 (91)
T PF14730_consen 3 KVIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEEW---------LVFSSSFLSLDRTR-INYTLII 72 (91)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEEE---------EEEccccccccceE-EEEEEEE
Confidence 4567777766654 3443 347777777532 1333221 223221 1235788
Q ss_pred EEECCEEEEEEec
Q 028809 176 EMKNGVLKLTLPM 188 (203)
Q Consensus 176 ~~~nGvL~I~lPK 188 (203)
..+||-.++++-.
T Consensus 73 ~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 73 DCKDGKYRLTITN 85 (91)
T ss_pred EEECCEEEEEEEE
Confidence 8899999988854
No 73
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=32 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=25.5
Q ss_pred EEECC-CCCCCceEEEEE-CCEEEEEEeecCcC
Q 028809 118 SVDMP-GLAKEDVRVSLE-QNTLVIKGKGGKED 148 (203)
Q Consensus 118 ~vdLP-Gv~kedI~V~v~-~~~L~I~g~~~~~~ 148 (203)
+.-|| |++++.|.=++. +|.|+|++......
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 45677 899999999995 79999999876543
No 74
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=50.73 E-value=31 Score=28.20 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=32.0
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|++|+|+++++.++|+|... +..+.|. |. .++...+++.|.|..+
T Consensus 7 P~~V~v~i~~~~i~vkGp~G----------~L~~~~~-~~------~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG----------EVTRELW-YP------GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe----------EEEEEEe-CC------cEEEEEeCCEEEEEeC
Confidence 68899999999999999853 3333332 33 3555678998888854
No 75
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=50.11 E-value=15 Score=24.95 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=12.2
Q ss_pred cceEEEEECCEEEEEEec
Q 028809 171 DQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 171 d~i~A~~~nGvL~I~lPK 188 (203)
..|+|.|+||||+--=|-
T Consensus 3 ~~I~aiYe~GvlkPl~~~ 20 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPV 20 (60)
T ss_dssp --EEEEEETTEEEECS--
T ss_pred ceEEEEEECCEEEECCCC
Confidence 459999999999865443
No 76
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=49.90 E-value=65 Score=26.79 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|+.|+|+++++.|+|+|... ..+ ..||..- -.+....++|.|.|.-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG----------~Ls--~~~~~~~---~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG----------TLT--KDLRHLQ---LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc----------EEE--EEcCCCC---cEEEEEecCCEEEEEeC
Confidence 68999999999999999853 333 3455421 13666778888888744
No 77
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=49.66 E-value=37 Score=28.07 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|++|+|+++++.++++|... ...+ .||.. .++...+||.|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~G----------~L~~--~~~~~-----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG----------ELTR--DFWYP-----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCe----------EEEE--EecCC-----cEEEEEECCEEEEEEC
Confidence 68999999999999999853 3333 34331 3566779998888755
No 78
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=49.30 E-value=67 Score=22.82 Aligned_cols=32 Identities=3% Similarity=0.324 Sum_probs=27.8
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~ 189 (203)
.|.-.+.||. + +++.|+-++.+|.|+|..-+.
T Consensus 8 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVKH-F-SPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 7888889997 4 899999999999999999653
No 79
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=48.81 E-value=45 Score=26.05 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=28.9
Q ss_pred CeEEEEEECCC-CCCCceEEEEECCEEEEEEeecCc
Q 028809 113 DALNLSVDMPG-LAKEDVRVSLEQNTLVIKGKGGKE 147 (203)
Q Consensus 113 ~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~~~~~ 147 (203)
..|.-.+.||. ++++.++-++.+|.|+|.-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 56788888984 688889999999999999887544
No 80
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.99 E-value=8 Score=36.15 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCceeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEE--ECC
Q 028809 103 RPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEM--KNG 180 (203)
Q Consensus 103 ~p~~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~--~nG 180 (203)
.|.+.+..+++...|.+..|-.+...+.+..-++..+.++. .|-.+..+|..+.+...-.|+| ++|
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~------------pyflrl~~p~~~~~d~~~n~s~d~kd~ 70 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG------------PYFLRLAGPGMVEDDARPNASYDAKDG 70 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc------------hhHHhhcCcchhhhhccccCccccccc
Confidence 57789999999999999999777777777777777666654 5556667777775555566666 889
Q ss_pred EEEEEEeccCC
Q 028809 181 VLKLTLPMMKE 191 (203)
Q Consensus 181 vL~I~lPK~~~ 191 (203)
-..|.+||..+
T Consensus 71 ~~~vK~~K~~~ 81 (466)
T KOG3247|consen 71 YAHVKVPKFHP 81 (466)
T ss_pred eeEEeecCCCc
Confidence 99999999643
No 81
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=46.85 E-value=87 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=31.9
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|++|+|+++++.|+|+|... ...+. ||.. ++...+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G----------~l~~~--l~~~------i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG----------ELSRT--LHPG------VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe----------EEEEE--cCCC------eEEEEECCEEEEEec
Confidence 68999999999999999853 34443 3543 455678888887755
No 82
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=45.48 E-value=86 Score=25.63 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=31.6
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|++|+|+++++.|+|+|... ...+.| |.. ++...+++.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~G----------~l~~~~--~~~------v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG----------ELSRTL--NPD------VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE----------EEEEEc--CCC------eEEEEECCEEEEEcC
Confidence 68999999999999999853 444444 443 445568888777754
No 83
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=45.41 E-value=69 Score=22.81 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
.|.-.+.||. + +++.|+-++.++.|+|+.-+..
T Consensus 11 ~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVNH-F-APEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECCC-C-CHHHEEEEEECCEEEEEEEECc
Confidence 7888889997 4 8999999999999999997643
No 84
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=43.49 E-value=93 Score=25.80 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCCCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 124 LAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 124 v~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
.-|++++|+++++.++++|-+. .. +..++..+ |+-+.+|+++.+..-
T Consensus 10 ~~P~gV~V~i~~~~v~vkGpkG----------eL--~~~~~~~~-----v~v~~~~~~~vv~~~ 56 (178)
T COG0097 10 VIPAGVTVSIEGQVVTVKGPKG----------EL--TREFHDNV-----VKVEVEDNILVVRPV 56 (178)
T ss_pred ecCCCeEEEEeccEEEEECCCc----------EE--EEEecCcc-----eEEEecCCEEEEeec
Confidence 3489999999999999999753 22 22344332 677788887766543
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=42.76 E-value=1.2e+02 Score=24.91 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=31.5
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
|+.|+|+++++.|+|+|... + -...||.. ++...+++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G----------~--l~~~~~~~------v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG----------T--LSRKIPDL------ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE----------E--EEEECCCC------eEEEEeCCEEEEEcC
Confidence 57899999999999999853 2 23455553 455678887777754
No 86
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=42.33 E-value=65 Score=26.74 Aligned_cols=51 Identities=22% Similarity=0.066 Sum_probs=31.4
Q ss_pred CceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028809 127 EDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 127 edI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK 188 (203)
..+++..+.+.+.|.|..+. |...=.+.... +.-.++-+|++|.|++.==+
T Consensus 131 ~~i~v~~~~~~V~V~Gtlkt----------~vg~~~~~~~~-k~Y~l~~~y~~G~l~L~~f~ 181 (188)
T PRK13726 131 TSVRVWPQYGRVDIRGVLKT----------WIGDSKPFTEI-KHYILILKRENGVTWLDNFG 181 (188)
T ss_pred eeEEEccCCCEEEEEEEEEE----------EECCcccCchh-eEEEEEEEEcCCEEEEEEEE
Confidence 45666666778888887542 11111122222 45668899999999987533
No 87
>PRK10568 periplasmic protein; Provisional
Probab=40.78 E-value=1.3e+02 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCCCCCceEEEEECCEEEEEEeecCc
Q 028809 122 PGLAKEDVRVSLEQNTLVIKGKGGKE 147 (203)
Q Consensus 122 PGv~kedI~V~v~~~~L~I~g~~~~~ 147 (203)
|+++..+|+|.+.+|.+++.|.-...
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s~ 98 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVESQ 98 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCCH
Confidence 45556789999999999999987643
No 88
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=39.48 E-value=75 Score=21.66 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCeEEEEEECCC-CCCCceEEEEECCEEEEEEeecC
Q 028809 112 KDALNLSVDMPG-LAKEDVRVSLEQNTLVIKGKGGK 146 (203)
Q Consensus 112 ~~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~~~~ 146 (203)
+..|.+.++|.+ +.+++.+..+.++.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457999999976 68999999999999999987643
No 89
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.51 E-value=84 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.516 Sum_probs=29.0
Q ss_pred eeEEEcCCeEEEEEECCCCCCCceEEEEECCEEEEEEee
Q 028809 106 WAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKG 144 (203)
Q Consensus 106 ~di~E~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~ 144 (203)
|++.+.+| .|....||++ .|.|+.+++.|.|.+..
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~~ 60 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTTD 60 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEeccc
Confidence 78888888 6777889985 58888899999999843
No 90
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=34.91 E-value=1.2e+02 Score=20.26 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=28.6
Q ss_pred eeEE-EcCCeEEEEEECCCCCCCceEEEEE-CCEEEEEEe
Q 028809 106 WAAK-VTKDALNLSVDMPGLAKEDVRVSLE-QNTLVIKGK 143 (203)
Q Consensus 106 ~di~-E~~~~y~i~vdLPGv~kedI~V~v~-~~~L~I~g~ 143 (203)
+.+. -..+.|.|++..||+....-.|.+. +....|+..
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 4555 3467899999999999888888886 456666655
No 91
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=33.77 E-value=72 Score=25.98 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTL 186 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~l 186 (203)
+++++++..++.+.|+|..+. |...=.+...- ..=.+.-+|+||.|.|.=
T Consensus 130 ~~~i~~d~~~~~V~V~G~l~t----------~~g~~~~~~~~-~~y~~~~~~~~g~~~L~~ 179 (187)
T PF05309_consen 130 PKSIEVDPETLTVFVTGTLKT----------WIGDKKVSSED-KTYRLQFKYRNGRLWLKS 179 (187)
T ss_pred EeEEEEecCCCEEEEEEEEEE----------EECCcccccee-EEEEEEEEEeCCEEEEee
Confidence 356666667777777877432 11110111111 233477788999988873
No 92
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=33.10 E-value=59 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.541 Sum_probs=22.7
Q ss_pred CCCCCCceEEEEECCEEEEEEeecCc
Q 028809 122 PGLAKEDVRVSLEQNTLVIKGKGGKE 147 (203)
Q Consensus 122 PGv~kedI~V~v~~~~L~I~g~~~~~ 147 (203)
.|+...+|+|.+++|.++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 57888899999999999999997654
No 93
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=32.67 E-value=1.7e+02 Score=24.26 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred cCCeEEEEEECCCCCCCceEEEEECCEEEEEEeecCcC
Q 028809 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKED 148 (203)
Q Consensus 111 ~~~~y~i~vdLPGv~kedI~V~v~~~~L~I~g~~~~~~ 148 (203)
.++.|+=++.||--..+..++++.++.|.|..++.++.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCC
Confidence 34446668889866778889999999999999987654
No 94
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=32.41 E-value=1e+02 Score=21.14 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=25.6
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lP 187 (203)
...-.|.+|..+ ..+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~-~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGT-KSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCC-cceeEEEEEEcCEEEEEEC
Confidence 345567889888 8899999999999999886
No 95
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=32.30 E-value=34 Score=23.25 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=18.5
Q ss_pred CCCCceEEEEECCEEEEEEee
Q 028809 124 LAKEDVRVSLEQNTLVIKGKG 144 (203)
Q Consensus 124 v~kedI~V~v~~~~L~I~g~~ 144 (203)
++.+.|.|....+.|.|+|+.
T Consensus 23 f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETTEEEEEEEEE
T ss_pred ECCCEEEEEeCCEEEEEECce
Confidence 478899999999999999985
No 96
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=31.08 E-value=78 Score=24.89 Aligned_cols=29 Identities=34% Similarity=0.601 Sum_probs=18.5
Q ss_pred EEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028809 159 IRIELPEKIFKTDQIKAEMKNGVLKLTLPMM 189 (203)
Q Consensus 159 r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~ 189 (203)
-++.-|+++ .+.++...+||.|.|...+.
T Consensus 23 v~v~~~~~l--~~~i~~~v~~g~L~I~~~~~ 51 (181)
T PF10988_consen 23 VEVEADENL--LDRIKVEVKDGTLKISYKKN 51 (181)
T ss_dssp EEEEEEHHH--HCCEEEEEETTEEEEEE-SC
T ss_pred EEEEEChhh--cceEEEEEECCEEEEEECCC
Confidence 334444443 47788888888888888754
No 97
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=30.18 E-value=1.6e+02 Score=22.55 Aligned_cols=31 Identities=6% Similarity=0.273 Sum_probs=16.9
Q ss_pred CCeEEEEEECCCC-CCCceEEEEECCEEEEEE
Q 028809 112 KDALNLSVDMPGL-AKEDVRVSLEQNTLVIKG 142 (203)
Q Consensus 112 ~~~y~i~vdLPGv-~kedI~V~v~~~~L~I~g 142 (203)
.....|.+.||-= +-++|++....|.+.|.+
T Consensus 117 ~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 117 DNKSKITIYLPKDYKLDKIDIKTSSGDITIED 148 (166)
T ss_pred CCCcEEEEEECCCCceeEEEEEeccccEEEEc
Confidence 3455555666643 345666666556665554
No 98
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=28.93 E-value=1.2e+02 Score=24.66 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCceEEEEECCEEEEEEeecCcCCCCceeeEEEEEEECCCCCCCCcceEEEEECCEEEEE
Q 028809 126 KEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLT 185 (203)
Q Consensus 126 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~ 185 (203)
+.++++..+++.+.|+|..+. |...=.+...- ..=.++-.|++|.|.|.
T Consensus 130 ~~~i~v~~~~~~V~V~G~l~~----------~vg~~~~~~~~-k~y~~~~~~~~g~~~L~ 178 (181)
T TIGR02761 130 PKSVEWNPQEGTVKVRGHLKR----------FVGGRLLSDER-KTYLLRFSYSGGRLVLD 178 (181)
T ss_pred eeeEEEccCCCEEEEEEEEEE----------EECCeeccccc-eEEEEEEEEcCCEEEEe
Confidence 356777777788888887532 11111111111 33457777889988875
No 99
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=28.38 E-value=1.2e+02 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=25.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTL 186 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~l 186 (203)
.-.-.|+||..+ ..++++..++..-|+|.+
T Consensus 16 eV~v~i~lp~~~-~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGT-RAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCC-ceeeEEEEEEcCEEEEEE
Confidence 344567899999 999999999999999998
No 100
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=27.85 E-value=1.5e+02 Score=21.61 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred EEEcCCeEEEEEEC-CCCCCCceEEEEEC--CEEEEEEeecCc
Q 028809 108 AKVTKDALNLSVDM-PGLAKEDVRVSLEQ--NTLVIKGKGGKE 147 (203)
Q Consensus 108 i~E~~~~y~i~vdL-PGv~kedI~V~v~~--~~L~I~g~~~~~ 147 (203)
|.++++.+.|.+.+ ||-+++.| +.+++ +.|.|+-.....
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP~ 42 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPPV 42 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCCC
Confidence 35778889999988 89988888 44566 788888775543
No 101
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.72 E-value=50 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.3
Q ss_pred CCCCceEEEEECCEEEEEEee
Q 028809 124 LAKEDVRVSLEQNTLVIKGKG 144 (203)
Q Consensus 124 v~kedI~V~v~~~~L~I~g~~ 144 (203)
++.+.|.+....+.|+|+|+.
T Consensus 22 fd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcEEEEEEcce
Confidence 467888888888999999884
No 102
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=26.71 E-value=30 Score=27.97 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=18.7
Q ss_pred CCCCCCCCcceEEEEECCEEEEEEec
Q 028809 163 LPEKIFKTDQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 163 LP~~v~d~d~i~A~~~nGvL~I~lPK 188 (203)
|-+.+ ..+.-.+.|.||||+|.|+-
T Consensus 65 l~e~~-~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEV-PGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhc-CccccccccccceEEEEecC
Confidence 44455 44667788999999999973
No 103
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=26.70 E-value=76 Score=23.82 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.8
Q ss_pred cceEEEEECCEEEEEEec
Q 028809 171 DQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 171 d~i~A~~~nGvL~I~lPK 188 (203)
..+.+.+.+|||+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 368999999999999964
No 104
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=25.49 E-value=54 Score=23.70 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCCCCceEEEEECCEEEEEEee
Q 028809 123 GLAKEDVRVSLEQNTLVIKGKG 144 (203)
Q Consensus 123 Gv~kedI~V~v~~~~L~I~g~~ 144 (203)
-++.+.|.+....+.|.|+|+.
T Consensus 40 ~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCceEEEEEccc
Confidence 4688999999999999999984
No 105
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=25.43 E-value=69 Score=24.00 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.6
Q ss_pred cceEEEEECCEEEEEEec
Q 028809 171 DQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 171 d~i~A~~~nGvL~I~lPK 188 (203)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 568888999999999983
No 106
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=25.17 E-value=1.1e+02 Score=20.49 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=15.3
Q ss_pred CCCC-CCceEEEEECCEEEEE
Q 028809 122 PGLA-KEDVRVSLEQNTLVIK 141 (203)
Q Consensus 122 PGv~-kedI~V~v~~~~L~I~ 141 (203)
.||. -+.|+|.+.+|.|+|+
T Consensus 36 aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 36 AGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred hCCCCCCEEEEEEECCEEEEe
Confidence 4664 3678888888888886
No 107
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=25.03 E-value=1.7e+02 Score=21.39 Aligned_cols=35 Identities=3% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCeEEEEEECCC-CCCCceEEEEECCEEEEEEeecC
Q 028809 112 KDALNLSVDMPG-LAKEDVRVSLEQNTLVIKGKGGK 146 (203)
Q Consensus 112 ~~~y~i~vdLPG-v~kedI~V~v~~~~L~I~g~~~~ 146 (203)
+..|.+.++|.+ +.+++-...+.++.|.|+-.+..
T Consensus 43 ~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 43 GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred CeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 445899999987 69999999999999999988754
No 108
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=24.72 E-value=65 Score=24.22 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=14.5
Q ss_pred eEEEEECCEEEEEEec
Q 028809 173 IKAEMKNGVLKLTLPM 188 (203)
Q Consensus 173 i~A~~~nGvL~I~lPK 188 (203)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 7888999999999985
No 109
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=24.33 E-value=2.1e+02 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCCCceEEEEECCEEEEEEee
Q 028809 116 NLSVDMPGLAKEDVRVSLEQNTLVIKGKG 144 (203)
Q Consensus 116 ~i~vdLPGv~kedI~V~v~~~~L~I~g~~ 144 (203)
.|.+.+| +|-+|.++++...-+|..
T Consensus 4 ~itv~vP----adAkl~v~G~~t~~~G~~ 28 (75)
T TIGR03000 4 TITVTLP----ADAKLKVDGKETNGTGTV 28 (75)
T ss_pred EEEEEeC----CCCEEEECCeEcccCccE
Confidence 5788888 889999998888877764
No 110
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=23.99 E-value=65 Score=24.08 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.8
Q ss_pred ceEEEEECCEEEEEEec
Q 028809 172 QIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 172 ~i~A~~~nGvL~I~lPK 188 (203)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888999999999984
No 111
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=21.16 E-value=2.1e+02 Score=22.69 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=18.7
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEEec
Q 028809 162 ELPEKIFKTDQIKAEMKNGVLKLTLPM 188 (203)
Q Consensus 162 ~LP~~v~d~d~i~A~~~nGvL~I~lPK 188 (203)
.=|+.| .+.........|-+++++|+
T Consensus 150 ~~p~~V-~p~~~~~~~~~~~~~~~lp~ 175 (177)
T PF06964_consen 150 ENPENV-VPVTSTVSAEGGTFTYTLPP 175 (177)
T ss_dssp SSTTSS-EEEEEEEEEETTEEEEEE-S
T ss_pred CCCCEE-EEEEeeEEecCCEEEEEeCC
Confidence 447777 66666666679999999996
No 112
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=20.61 E-value=2.2e+02 Score=28.91 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=24.4
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028809 156 RYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMK 190 (203)
Q Consensus 156 ~F~r~~~LP~~v~d~d~i~A~~~nGvL~I~lPK~~ 190 (203)
-|....+.-..| |...+.-+|++|.|+|.+|-.+
T Consensus 733 ~YsS~~P~~c~v-~~~~~~f~y~~g~~~~~~~~~~ 766 (777)
T PLN02711 733 VFASEKPRSCKI-DGEEVEFGYEDCMVVVQVPWSG 766 (777)
T ss_pred EEecCCCeEEEE-CCEEeeeEecCCEEEEEecCCC
Confidence 455544444555 6667888889999999999865
Done!