RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028809
(203 letters)
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 84.9 bits (211), Expect = 4e-22
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKT 170
T D + ++VD+PG+ KED++V +E N L I GK +E+ E S + ELPE +
Sbjct: 4 TDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV-DP 62
Query: 171 DQIKAEMKNGVLKLTLP 187
++ KA ++NGVL++TLP
Sbjct: 63 EKSKASLENGVLEITLP 79
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 81.1 bits (201), Expect = 2e-20
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEE-------SVRRYTIRIEL 163
T DA + D+PG KED++V +E L I G+ +E+ +EE S ++ L
Sbjct: 5 TDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRL 64
Query: 164 PEKIFKTDQIKAEMKNGVLKLTLP 187
PE + D+IKA ++NGVL +TLP
Sbjct: 65 PEDV-DPDKIKASLENGVLTITLP 87
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 78.8 bits (195), Expect = 2e-19
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEE------SVRRYTIRIE 162
K KDA + +D+PG E+++V +E N +++KGK KE+ D+ S R ++ +
Sbjct: 3 KEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKFV 62
Query: 163 LPEKIFKTDQIKAEMKNGVLKLTLPMMKEDERTD 196
LPE D++KA +K+GVL +T+P ++ E+
Sbjct: 63 LPENA-DPDKVKASLKDGVLTVTVPKLEPPEKKP 95
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 63.9 bits (156), Expect = 8e-14
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQN-TLVIKGKGGKED---GD-----EESVRRYTI 159
K T +A D+PG+ KEDV+V +E L I G+ KE+ GD E S R+
Sbjct: 5 KETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVR 64
Query: 160 RIELPEKIFKTDQIKAEMKNGVLKLTLP 187
R LPE D++KA ++NGVL +T+P
Sbjct: 65 RFRLPENA-DADEVKAFLENGVLTVTVP 91
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 64.3 bits (157), Expect = 2e-13
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEE--------SVRRYTIRIE 162
T D ++ ++PG+ KED+ +++E NTL I+G+ +E+ +EE + +
Sbjct: 48 TDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFR 107
Query: 163 LPEKIFKTDQIKAEMKNGVLKLTLPMMKEDERTDVLHIKVE 203
LPEK+ + IKA+ KNG+L +TLP E E I++E
Sbjct: 108 LPEKV-DPEVIKAKYKNGLLTVTLP-KAEPEEKKPKRIEIE 146
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 57.5 bits (140), Expect = 2e-11
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIE-------- 162
T D + D+PG KED+++ + L I K + +++ Y IR E
Sbjct: 8 TDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNY-IRRERYYGSFSR 66
Query: 163 ---LPEKIFKTDQIKAEMKNGVLKLTLP 187
LP ++IKA+ +NGVLK+TLP
Sbjct: 67 SFYLPNV--DEEEIKAKYENGVLKITLP 92
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 47.5 bits (114), Expect = 1e-07
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEE-------SVRRYTIRI 161
K ++ +++ + G +++D+ + +E N L + GK E+ +E + R +
Sbjct: 7 KTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF 66
Query: 162 ELPEKIFKTDQIK-AEMKNGVLKLTL 186
L + + ++K AE++NG+L + L
Sbjct: 67 NLADHV----KVKGAELENGLLTIDL 88
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 42.3 bits (100), Expect = 9e-06
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKT 170
T D + +++ + + K+DV+V +L + KGG Y + EL I
Sbjct: 4 TLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGK-------EYLLEGELFGPI-DP 55
Query: 171 DQIKAEMKNGVLKLTLPMMKEDE 193
++ K +++ +++TL K++
Sbjct: 56 EESKWTVEDRKIEITL--KKKEP 76
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 40.6 bits (96), Expect = 3e-05
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPEKIFK 169
+ +++D+ G E+++V + N LV++GK +ED R +T R +LPE +
Sbjct: 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-D 63
Query: 170 TDQIKAEM-KNGVLKLTLPM 188
D + + + +GVL + P
Sbjct: 64 PDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought to
be indicative of an interaction between CS and CHORD. It
has been suggested that the CS domain is a binding
module for HSP90, implying that CS domain-containing
proteins are involved in recruiting heat shock proteins
to multiprotein assemblies.
Length = 78
Score = 36.4 bits (85), Expect = 8e-04
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 111 TKDALNLSVDMPGLAK-EDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFK 169
T D + +++ + G+ K +DV+V ++ +L + KG + Y + EL I
Sbjct: 8 TLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGG-------KEYLLDGELFGPI-D 59
Query: 170 TDQIKAEMKNGVLKLTL 186
++ ++++ +++TL
Sbjct: 60 PEESSWKIEDTKVEITL 76
>gnl|CDD|205122 pfam12875, DUF3826, Protein of unknown function (DUF3826). This is
a putative sugar-binding family.
Length = 187
Score = 29.4 bits (66), Expect = 0.82
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 159 IRIELPEKIFKTDQIKAEMKNGVLKLT-------LPMMKEDERTDVLHIKVE 203
+ + L E+ + + +K M GVL +T +P + E+E+ + VE
Sbjct: 89 LSLYLTEE--QIEAVKDGMTYGVLPVTYKAYQDMIPSLTEEEKAQIYAWLVE 138
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 28.1 bits (63), Expect = 0.98
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 112 KDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIR-----IELPEK 166
K+ +L +D+ G + ED+ V ++ LV+ GK K++ DE+ Y + +LPE
Sbjct: 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEH 65
Query: 167 IFKTDQIKAEMKNGVLKLTLP 187
+ + +G L + P
Sbjct: 66 VDPEAVTCSLSPSGHLHIRAP 86
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. HspB7 is a
25-kDa protein, preferentially expressed in heart and
skeletal muscle. It binds the cytoskeleton protein
alpha-filamin (also known as actin-binding protein 280).
The expression of HspB7 is increased during rat muscle
aging. Its expression is also modulated in obesity
implicating this protein in this and related metabolic
disorders. As the human gene encoding HspB7 is mapped to
chromosome 1p36.23-p34.3 it is a positional candidate
for several dystrophies and myopathies.
Length = 81
Score = 27.6 bits (61), Expect = 1.6
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIF 168
K D +VD+ + ED+ V+ N + + + K D + +T + +LPE +
Sbjct: 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAE--KLASDGTVMNTFTHKCQLPEDVD 61
Query: 169 KTDQIKAEMKNGVL 182
T + ++G L
Sbjct: 62 PTSVSSSLGEDGTL 75
>gnl|CDD|216370 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase.
Length = 296
Score = 27.9 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 44 YDD--DGGDDREFDFERSSARSLTPSFFPVFE 73
+DD +G +R F F +S + P++ P+ E
Sbjct: 183 FDDLNEGDFERSFAFTQSVGDAFLPAYLPIVE 214
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 28.0 bits (63), Expect = 4.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 133 LEQNTLVIKGKGGKEDGDEESVRRYTIRIE---LPEKIFKTDQIKAEMKNGVLKLTLPMM 189
L + IK + G E D++ + + ++E LPE++ K I+ E+ L L P
Sbjct: 228 LREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKK--VIEKELTK--LSLLEPSS 283
Query: 190 KE 191
E
Sbjct: 284 SE 285
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 27.4 bits (62), Expect = 5.2
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 19/64 (29%)
Query: 116 NLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKA 175
+ +++ G AK+ V V+ + NT ++ G G KE R+ QIKA
Sbjct: 310 DATLEDLGQAKK-VVVTKD-NTTIVDGAGDKEAIKA--------RVA---------QIKA 350
Query: 176 EMKN 179
+++
Sbjct: 351 QIEE 354
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 27.2 bits (61), Expect = 5.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 103 RPRWAAKVTKDALNLSVDMPGL 124
P + ++TK A+N ++D G
Sbjct: 221 MPPFGLRLTKRAVNQTLDAQGF 242
>gnl|CDD|227308 COG4974, XerD, Site-specific recombinase XerD [DNA replication,
recombination, and repair].
Length = 300
Score = 27.2 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 123 GLAKEDVRVSLEQNTLVIKGKGGKED----GDE--ESVRRY--TIRIELPEK 166
GL DV L Q + ++GKG KE G+E E++ +Y R +L +
Sbjct: 156 GLTLSDV--DLRQGVVRVRGKGNKERLVPFGEEAVEALEKYLEEARPKLLKG 205
>gnl|CDD|238861 cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases
similar to Streptomyces scabies esterase (SEST), a
causal agent of the potato scab disease, which
hydrolyzes a specific ester bond in suberin, a plant
lipid. The tertiary fold of this enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles two of the three components of typical
Ser-His-Asp(Glu) triad from other serine hydrolases, but
may lack the carboxylic acid.
Length = 259
Score = 26.6 bits (59), Expect = 7.7
Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 16/77 (20%)
Query: 18 RALRSTISSSATWACRFFNTTNAFREYDDDGGDDREFDFERSSARSLTPSFFPVFEPFEP 77
+R + + + RF +T F + D P
Sbjct: 192 ALIRRAAADAGDYKVRFVDTDAPFAGHRACSPDPWS----------------RSVLDLLP 235
Query: 78 FSRSRSLSMNENGEGLY 94
+ + N G
Sbjct: 236 TRQGKPFHPNAAGHRAI 252
>gnl|CDD|220926 pfam10988, DUF2807, Protein of unknown function (DUF2807). This
bacterial family of proteins shows structural similarity
to other pectin lyase families. Although structures from
this family align with acetyl-transferases, there is no
conservation of catalytic residues found. It is likely
that the function is one of cell-adhesion. In PDB:3jx8,
it is interesting to note that the sequence of contains
several well defined sequence repeats, centred around
GSG motifs defining the tight beta turn between the two
sheets of the super-helix; there are 8 such repeats in
the C-terminal half of the protein, which could be
grouped into 4 repeats of two. It seems likely that this
family belongs to the superfamily of trimeric
autotransporter adhesins (TAAs), which are important
virulence factors in Gram-negative pathogens. In the
case of Parabacteroides distasonis, which is a cmoponent
of the normal distal human gut microbiota, TAA-like
complexes probably modulate adherence to the host
(information derived from TOPSAN).
Length = 181
Score = 26.4 bits (59), Expect = 7.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 149 GDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187
GDE SV IE E + D+I+ E+K G LK+ L
Sbjct: 18 GDENSVV-----IEGDENLL--DKIETEVKGGTLKIRLK 49
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed.
Length = 180
Score = 26.3 bits (59), Expect = 8.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 127 EDVRVSLEQNTLVIKGKGG 145
E V V +E + +KG G
Sbjct: 14 EGVTVEIEGLVVTVKGPKG 32
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 26.8 bits (59), Expect = 9.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDG 149
+ K +N V M G E + +E+ T ++K G+ D
Sbjct: 574 KGEQLKVGINDLVAMAGGVIESLGKEVEKLTGLLKAAAGEADN 616
>gnl|CDD|218133 pfam04533, Herpes_U44, Herpes virus U44 protein. This is a family
of proteins from dsDNA beta-herpesvirinae and
gamma-herpesvirinae viruses. The function is not known,
and the proteins are named variously as U44, BSRF1,
UL71, and M71. The family BSRF1 has been merged into
this.
Length = 211
Score = 26.6 bits (59), Expect = 9.7
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 150 DEESVR-RYTIRIELPEKIFKTDQIKAEMKNGVLK-LTLPMMKEDERTDVL 198
+E R R I + LP + D +++E L+ L ++ + TD L
Sbjct: 31 EECPERWRAEIDLGLPPGVLVGDLLQSEKDTETLRQAYLLAVQSNLITDYL 81
>gnl|CDD|110302 pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.
Length = 467
Score = 26.7 bits (59), Expect = 9.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 110 VTKDALNLSVDMPGLAKEDVRVSLEQNT 137
V +D L +S+D+PG+A D + ++ T
Sbjct: 91 VKRDPLTISIDLPGMANSDNTIVVQNPT 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,284,707
Number of extensions: 960266
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 35
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)