RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 028809
         (203 letters)



>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
           alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
           b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
          Length = 151

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 70  PVFEPFEPFSRS--RSLSMNENGEGLYSAGAGAGLRPRWAAKVTKDALNLSVDMPGLAKE 127
            VF+PF         +            +   A    R   K T +A     D+PG+ KE
Sbjct: 8   NVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKE 67

Query: 128 DVRVSLEQ-NTLVIKGKGGKEDGDEE--------SVRRYTIRIELPEKIFKTDQIKAEMK 178
           +V+V +E  N LV+ G+  KE  D+         S  ++  R  L E   K +++KA ++
Sbjct: 68  EVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-KVEEVKAGLE 126

Query: 179 NGVLKLTLPMMKEDERTDVLHIKVE 203
           NGVL +T+P   E ++ +V  I++ 
Sbjct: 127 NGVLTVTVP-KAEVKKPEVKAIQIS 150


>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
           chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
          Length = 123

 Score = 80.4 bits (199), Expect = 6e-20
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 94  YSAGAGAGLRPRWAAKVTKDALNLSVDMPGLAKEDVRVSLE-QNTLVIKGKGGKEDGD-- 150
            S G    + P          L +  D+ G  KE ++  +  QN L+I+ +    +    
Sbjct: 15  LSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVK 74

Query: 151 --EESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187
              +  +     I LP  + K  +I  + +NGVL + +P
Sbjct: 75  YLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113


>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
           {Methanocaldococcus jannaschii} PDB: 1shs_A
          Length = 161

 Score = 80.9 bits (200), Expect = 8e-20
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 51  DREFDFERSSARSLTPSFFPVFEPFEPFSRSRSLSMNENGEGLYSAGAGAGLRPRWAAKV 110
           +R F            +        +  +     ++           +G G     +   
Sbjct: 12  ERMFK-------EFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKG-FMPISIIE 63

Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKG--KGGKEDGDEESVRR-------YTIRI 161
               + +   +PG+ KED+ ++   +TL I+           E  +             I
Sbjct: 64  GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 123

Query: 162 ELPEKIFKTDQIKAEMKNGVLKLTLPMMKEDERTDVLHIKVE 203
           +LP  + K +   A+ +NGVL + LP  +   +     I +E
Sbjct: 124 KLPATV-KEENASAKFENGVLSVILPKAESSIKK---GINIE 161


>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
           resolution, stress response, chaperone; 1.64A
           {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
          Length = 100

 Score = 78.3 bits (194), Expect = 2e-19
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 105 RWAAKV----TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKG--KGGKEDGDEESVRR-- 156
           +W  +V      +   L  D+PG+    + V +++  L I+G  K       E   R   
Sbjct: 2   QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIER 61

Query: 157 ----YTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKE 191
               +  R  LP+     D I A  +NGVL++ +P    
Sbjct: 62  RYGSFHRRFALPDSA-DADGITAAGRNGVLEIRIPKRPA 99


>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
           stress protein, eye LEN protein, cataract; HET: MSE;
           2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
          Length = 90

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 108 AKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPEK 166
             + KD  ++++D+   + E+++V +  + + + GK   ++D      R +  +  +P  
Sbjct: 1   GAMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60

Query: 167 IFKTDQIKAEM-KNGVLKLTLPMMKE 191
           +     I + M  +GVL +  P  + 
Sbjct: 61  V-DPLTITSSMSSDGVLTVNGPRKQV 85


>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
           charcot-marie-tooth DISE neuronopathy, IG-like fold,
           stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
          Length = 85

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 107 AAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPE 165
               T D   +S+D+   A +++ V  +   + I GK   ++D      R +T +  LP 
Sbjct: 1   GGSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPP 60

Query: 166 KIFKTDQIKAEM-KNGVLKLTLPMMK 190
            +    Q+ + +   G L +  PM K
Sbjct: 61  GV-DPTQVSSSLSPEGTLTVEAPMPK 85


>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
           intermolecular INTE chaperone, SHSP, human, small
           heat-shock protein, cataract; NMR {Homo sapiens} PDB:
           2ygd_A
          Length = 175

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 4/152 (2%)

Query: 54  FDFERSSARSLTPSFFPVFEPFEPFSRSRSLSMNENGEGLYSAGAGAGLRPRWAAKVTKD 113
           F F   S R     F       + F  S SLS        +              ++ KD
Sbjct: 15  FPFHSPS-RLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKD 73

Query: 114 ALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPEKIFKTDQ 172
             ++++D+   + E+++V +  + + + GK   ++D      R +  +  +P  +     
Sbjct: 74  RFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADV-DPLT 132

Query: 173 IKAEM-KNGVLKLTLPMMKEDERTDVLHIKVE 203
           I + +  +GVL +  P  +       + I  E
Sbjct: 133 ITSSLSSDGVLTVNGPRKQVSGPERTIPITRE 164


>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
           response; 1.12A {Rattus norvegicus}
          Length = 101

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPEKI 167
                  ++ +D+   + E++ V +  + + +  +   + D      R +  R  LP  +
Sbjct: 7   PTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGV 66

Query: 168 FKTDQIKAEM-KNGVLKLTLPMMKEDE 193
                + + +   GVL +         
Sbjct: 67  -DPAAVTSALSPEGVLSIQATPASAQA 92


>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
           2.5A {Taenia saginata}
          Length = 314

 Score = 62.2 bits (150), Expect = 6e-12
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 51  DREFDFERSSARSLTPSFFPVFEPFEPFSRSRSLSMNENGEGLYSAGAGAGLRPRWAA-- 108
             +      +  SL P F  +   FE   +  S                  L     A  
Sbjct: 47  HDDIVNMHRNLFSLEP-FTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYE 105

Query: 109 --KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEK 166
             K  +    +  ++     E++ +  ++N LV++ +     GD          I LP  
Sbjct: 106 VGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPS 165

Query: 167 IFKTDQIKAEM-KNGVLKLTLPMMKEDE 193
           +   + I+A +  + VL +  P+ + + 
Sbjct: 166 V-DRNHIQATITTDDVLVIEAPVNEPNY 192



 Score = 53.3 bits (127), Expect = 7e-09
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 122 PGLAKEDVRVSLEQNTLVIKGKGGKE----DGDEESVRRYTIRIELPEKIFKTDQIKAEM 177
           P  A +DV+V  + N + + G  GKE    +      R +      PE +    + +AE+
Sbjct: 243 PHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVV-DASKTQAEI 301

Query: 178 KNGVLKLTLPMMK 190
            +G++ +  P+ K
Sbjct: 302 VDGLMVVEAPLFK 314


>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
           protein aggregation, CRYS eye lens protein, chaperone;
           1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
          Length = 106

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 109 KVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGK-GGKEDGDEESVRRYTIRIELPEKI 167
           +  +D   + +D+   + ED+ V ++++ + I GK   ++D      R +  R  LP  +
Sbjct: 8   RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV 67

Query: 168 FKTDQIKAEM-KNGVLKLTLPMMK--EDERTDVLHIKVE 203
                +   +  +G+L  + P +    D       I V 
Sbjct: 68  -DQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 43/231 (18%), Positives = 65/231 (28%), Gaps = 94/231 (40%)

Query: 1   MASFFALKTLASSSIPPRALRST----------------ISSSATWACRFFNTTNAFREY 44
           +A +    T       P  LRS                 I+ + +W              
Sbjct: 246 LAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE------------- 290

Query: 45  DDDGGDDREFDFERSSARSLTPSF---------FPVFEPFEPFSRSRSLSMNENGEGLYS 95
                      F  S  +++T  F         +P      P     SL   EN EG+ S
Sbjct: 291 ----------SFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDSL---ENNEGVPS 336

Query: 96  AGAG-AGLRPRWAAKVTK--DALNLSVDMPGLAKEDVRVSLEQNT---LVIKG------- 142
                + L      +V    +  N  +  P  A + V +SL  N    LV+ G       
Sbjct: 337 PMLSISNLTQ---EQVQDYVNKTNSHL--P--AGKQVEISL-VNGAKNLVVSGPPQSLYG 388

Query: 143 ------KGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLP 187
                 K     G ++S      RI   E+       K +  N  L +  P
Sbjct: 389 LNLTLRKAKAPSGLDQS------RIPFSER-------KLKFSNRFLPVASP 426



 Score = 37.3 bits (86), Expect = 0.002
 Identities = 38/176 (21%), Positives = 54/176 (30%), Gaps = 74/176 (42%)

Query: 16  PPRALRSTISSSATWACRFFNTTNAFREYDDDGGDDR---EFDFERSSARSLTPS--FFP 70
           PP++L               N     R+     G D+    F     S R L  S  F P
Sbjct: 382 PPQSLYG------------LNL--TLRKAKAPSGLDQSRIPF-----SERKLKFSNRFLP 422

Query: 71  VFEPF-----EPFSR--SRSLSMNE---NGEGL----YSAGAGAGLR------------- 103
           V  PF      P S   ++ L  N    N + +    Y    G+ LR             
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482

Query: 104 ----P-RWAAKVTKDALNLSVDM-PG-------LAKED-----VRV----SLEQNT 137
               P +W       A ++ +D  PG       L   +     VRV    +L+ N 
Sbjct: 483 IIRLPVKWETTTQFKATHI-LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 20/190 (10%), Positives = 54/190 (28%), Gaps = 61/190 (32%)

Query: 33  RFFNTT---------NAFR-EYDDDGGDDREFDFERSSARSLTPSFFPVFEPFEPFSRSR 82
           +F             +  + E        R +  +R          +   + F  ++ SR
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-------LYNDNQVFAKYNVSR 133

Query: 83  SLSMNENGEGLYSAGAGAGLRPRWAAKVTKDALNLSVD-MPGLAKEDVRVSLEQNTLVIK 141
                +  + L        LRP         A N+ +D + G  K           + + 
Sbjct: 134 LQPYLKLRQALLE------LRP---------AKNVLIDGVLGSGK---------TWVAL- 168

Query: 142 GKGGKEDGDEESVRRYTIRIELPEKIF--------KTDQIKAEMKNGVLKLTLPMMKEDE 193
                     +    Y ++ ++  KIF          + +   ++  + ++        +
Sbjct: 169 ----------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 194 RTDVLHIKVE 203
            +  + +++ 
Sbjct: 219 HSSNIKLRIH 228


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.030
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 6  ALKTLASSSIPPRALRSTI 24
          +LK  A  S P  A+++T+
Sbjct: 28 SLKLYADDSAPALAIKATM 46


>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
           chaperone-protein binding complex, stress response; HET:
           ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
          Length = 92

 Score = 30.2 bits (68), Expect = 0.13
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKT 170
             + + ++V   G+ K++V +   +  L +  +   ED        Y ++  L  KI   
Sbjct: 10  KPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGED-------AYYLQPRLFGKI-IP 61

Query: 171 DQIKAEMKNGVLKLTL 186
           D+ K E+ +  +++ L
Sbjct: 62  DKCKYEVLSTKIEICL 77


>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
           strands, similar to P23, lacking LAST beta strand SEEN
           in P23, protein degradation; NMR {Homo sapiens} SCOP:
           b.15.1.3
          Length = 114

 Score = 30.3 bits (68), Expect = 0.17
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIFKT 170
           T+  + +++ +  + K DV V   +  L    K    +        Y +++EL   I   
Sbjct: 17  TESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGE-------DYNLKLELLHPI-IP 68

Query: 171 DQIKAEMKNGVLKLTL 186
           +Q   ++ +  +++ L
Sbjct: 69  EQSTFKVLSTKIEIKL 84


>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
           alpha-beta the C-terminal all beta domain., structural
           genomics; 2.00A {Nostoc SP}
          Length = 374

 Score = 30.6 bits (69), Expect = 0.32
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 98  AGAGLRPRWAAKVTKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRY 157
                +      +      + + +PG  K+ V+++     + ++             RR 
Sbjct: 290 VEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGD---------QRR- 339

Query: 158 TIRIELPEKIFKTDQIKAEMKNGVLKLTL 186
              I LP  +       A+ +N  L ++ 
Sbjct: 340 --NIFLPPALSGRPITGAKFQNNYLIISF 366


>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
           joint center F structural genomics, JCSG; HET: PG4;
           2.07A {Bacteroides fragilis nctc 9343}
          Length = 221

 Score = 29.1 bits (65), Expect = 0.83
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 149 GDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVLKLTLPMMKEDERTDVLHIKV 202
             +       ++I  P+ I     I+  +K+  L L++   K+      + I +
Sbjct: 37  STDGK---TDLQIYGPDNIV--ALIQVAVKDNTLFLSIDKSKKVRNFKKMKITI 85


>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
           2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
           1tz3_A* 1tz6_A*
          Length = 339

 Score = 28.7 bits (65), Expect = 1.1
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)

Query: 36  NTTNAFREYDDDGGDDREFDFER--SSARSLTPSFFPVFE 73
            +         DG  +R F +     +   ++P   P F 
Sbjct: 103 TSAVLIVNLTADG--ERSFTYLVHPGADTYVSPQDLPPFR 140


>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA
           interaction, solution structure, DNA binding protein;
           NMR {Homo sapiens} SCOP: a.140.2.1
          Length = 151

 Score = 27.0 bits (59), Expect = 2.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 140 IKGKGGKEDGDEESVRRYTIRIELPEKIFKTDQIKAEMKNGVL-KLTLPMMKE 191
            +GK  K   D E       ++E  E     +++K  +  G L K T+PM+KE
Sbjct: 24  PEGKVTKRKHDNEGSGSKRPKVEYSE-----EELKTHISKGTLGKFTVPMLKE 71


>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
           2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
          Length = 290

 Score = 27.1 bits (61), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 131 VSLEQNTLVIKGKGGKE 147
           +SL Q  + + GKG KE
Sbjct: 158 ISLRQGVVRVIGKGNKE 174


>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
          N-terminal nucleophilic HYDR 19S regulatory particle;
          HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
          3nzw_K* 3nzx_K*
          Length = 287

 Score = 27.0 bits (60), Expect = 4.2
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 32 CRFFNTTNAFREYDDDGGDDREFDFERSSARSLTPSF-FPVFEPFEPFSRSRSLS 85
              N      +YD++   + +F    S  + L PS   P     + F R+ +  
Sbjct: 8  FSVPNRLVKELQYDNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDD 62


>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein
           structure initiative, structural genomics of pathogenic
           protozoa consortium; 1.40A {Leishmania major} SCOP:
           d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
          Length = 309

 Score = 26.4 bits (59), Expect = 6.9
 Identities = 5/32 (15%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 44  YDD--DGGDDREFDFERSSARSLTPSFFPVFE 73
           +DD  +   ++ F+F ++  +    ++ P+  
Sbjct: 196 FDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVN 227


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,059,131
Number of extensions: 180309
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 33
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)