RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028809
         (203 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 62.0 bits (150), Expect = 2e-13
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 111 TKDALNLSVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDE---------ESVRRYTIRI 161
               + +   +PG+ KED+ ++   +TL I+ K       E                  I
Sbjct: 18  GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 77

Query: 162 ELPEKIFKTDQIKAEMKNGVLKLTLPMMKEDERTDVLHIKVE 203
           +LP  + K +   A+ +NGVL + LP  +   +     I +E
Sbjct: 78  KLPATV-KEENASAKFENGVLSVILPKAESSIKK---GINIE 115


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 59.8 bits (144), Expect = 2e-12
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 19/147 (12%)

Query: 71  VFEPF-----EPFSRSRSLSMNENGEGLYSAGAGAGLRPRWAAKVTKDALNLSVDMPGLA 125
           VF+PF     +PF   RS+    +G     +   A    R   K T +A     D+PG+ 
Sbjct: 8   VFDPFADLWADPFDTFRSIVPAISG---GGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 126 KEDVRVSLEQ-NTLVIKGKGGKEDGDEE--------SVRRYTIRIELPEKIFKTDQIKAE 176
           KE+V+V +E  N LV+ G+  KE  D+         S  ++  R  L E   K +++KA 
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-KVEEVKAG 123

Query: 177 MKNGVLKLTLPMMKEDERTDVLHIKVE 203
           ++NGVL +T+P   E ++ +V  I++ 
Sbjct: 124 LENGVLTVTVP-KAEVKKPEVKAIQIS 149


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 28.6 bits (64), Expect = 0.63
 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 9/41 (21%)

Query: 32  CRFFNTTNAFREYDDDGGDDREFDFERSSARSLTPSFFPVF 72
              F+  N  R+   D G D  F F         P F P +
Sbjct: 307 AVTFDYGNNIRQVAKDEGVDDAFSF---------PGFVPAY 338


>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 75

 Score = 26.3 bits (58), Expect = 0.69
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 127 EDVRVSLEQNTLVIKGKGGK 146
             V V++  NT+ +KG  G+
Sbjct: 6   AGVTVTVNGNTVTVKGPKGE 25


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 87

 Score = 26.4 bits (58), Expect = 0.86
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 116 NLSVDMPGLAKEDVRVSLEQNTLVIKGKGGK 146
           N +VD+P    E+V ++L+  T+++KG  G 
Sbjct: 7   NQTVDIP----ENVDITLKGRTVIVKGPRGT 33


>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
           [TaxId: 562]}
          Length = 81

 Score = 25.9 bits (57), Expect = 1.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 127 EDVRVSLEQNTLVIKGKGGK 146
             V V +    + IKGK G+
Sbjct: 12  AGVDVKINGQVITIKGKNGE 31


>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 79

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 127 EDVRVSLEQNTLVIKGKGGK 146
           EDV    +   + ++G  G 
Sbjct: 9   EDVDAEQDHLDITVEGDNGS 28


>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 78

 Score = 25.9 bits (57), Expect = 1.4
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 127 EDVRVSLEQNTLVIKGKGGK 146
             V V+ +     +KG  G+
Sbjct: 9   SGVTVNAQDGVFKVKGPKGE 28


>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida
           [TaxId: 303]}
          Length = 227

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 118 SVDMPGLAKEDVRVSLEQNTLVIKGKGGKEDGDEESVRRYTIRIELPEKIF 168
           S+D   LA E    + E     +K K G    D++     +IR  + +   
Sbjct: 9   SLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFG 59


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 25.5 bits (56), Expect = 5.2
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 9/39 (23%)

Query: 34  FFNTTNAFREYDDDGGDDREFDFERSSARSLTPSFFPVF 72
            F+  N  R+   + G    FDF         P F P +
Sbjct: 317 TFDYGNNIRQMAKEEGVADAFDF---------PGFVPAY 346


>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 108

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 117 LSVDMPGLAKEDVRVSLEQNT 137
           +S D+PGL K +VR+  EQ T
Sbjct: 29  MSHDVPGLHKYEVRLVAEQPT 49


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
           (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 4/29 (13%), Positives = 16/29 (55%)

Query: 158 TIRIELPEKIFKTDQIKAEMKNGVLKLTL 186
            +R+ +P+ + K  Q+   + +  +++ +
Sbjct: 32  EVRVPVPKHVVKGKQVSVALSSSSIRVAM 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 728,724
Number of extensions: 33002
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 14
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)