BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028810
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
          Length = 133

 Score = 32.0 bits (71), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFE 109
           +ALA +  +L  Y+  +++L+ QQ + ++A I ++E     ++ +Q K +G E L     
Sbjct: 1   AALAEIVAQLNIYQ-SQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP--- 55

Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA--TVLLQKN 150
           V  G F +A ++DT  V + +GA V ++ + ++A  ++  QKN
Sbjct: 56  VGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKN 98


>pdb|2WAO|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
           Clostridium Thermocellum In Complex With Cellohexaose
          Length = 341

 Score = 31.2 bits (69), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 109 EVSEGIFSRARIEDTDS---VCLWLGANVMLEYSCDEATVLLQKNLEN 153
           E + GI    R + +D     C W G+NV L +   EA+V ++   EN
Sbjct: 6   EDNPGILYNGRFDFSDPNGPKCAWSGSNVELNFYGTEASVTIKSGGEN 53


>pdb|2WAB|A Chain A, Structure Of An Active Site Mutant Of A Family Two
           Carbohydrate Esterase From Clostridium Thermocellum In
           Complex With Celluohexase
          Length = 341

 Score = 31.2 bits (69), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 109 EVSEGIFSRARIEDTDS---VCLWLGANVMLEYSCDEATVLLQKNLEN 153
           E + GI    R + +D     C W G+NV L +   EA+V ++   EN
Sbjct: 6   EDNPGILYNGRFDFSDPNGPKCAWSGSNVELNFYGTEASVTIKSGGEN 53


>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
          Length = 151

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLE 152
           +  G F +  I D ++  + +G+   +E S DEA   L+K L+
Sbjct: 66  IGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLK 108


>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
           Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
          Length = 250

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 142 EATVLLQKNLENAKASLEVLIADLQFLRDQ 171
           E   L  K +  AKAS+EV+ A+L  LRD+
Sbjct: 28  EKMTLSHKEIPTAKASVEVICAELLRLRDR 57


>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
 pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
          Length = 901

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 26/43 (60%)

Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
          LQE +Q+ + V+   +   R++   +PD+++ LD +  L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQQILDDIKALAAEQ 78


>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
 pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
           Dehydrogenase Fusion Protein From Clostridium
           Acetobutylicum
          Length = 282

 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 91  VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           V TL+  +EG      D+     + S+ R+E  +++C+ LG+ 
Sbjct: 89  VNTLKFSREGISGFNTDYIGFGKMLSKFRVEIKNNICVVLGSG 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,995,542
Number of Sequences: 62578
Number of extensions: 129926
Number of successful extensions: 393
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 23
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)