Query 028810
Match_columns 203
No_of_seqs 132 out of 249
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3313 Molecular chaperone Pr 100.0 1.9E-68 4.2E-73 441.6 14.1 174 23-196 9-182 (187)
2 PRK03947 prefoldin subunit alp 100.0 1.3E-26 2.9E-31 184.8 18.9 132 49-183 4-135 (140)
3 TIGR00293 prefoldin, archaeal 99.9 1E-25 2.2E-30 176.5 16.6 124 53-180 1-124 (126)
4 cd00584 Prefoldin_alpha Prefol 99.9 1.1E-24 2.4E-29 171.1 17.5 128 54-184 2-129 (129)
5 PF02996 Prefoldin: Prefoldin 99.9 8.1E-23 1.7E-27 157.7 13.0 120 63-185 1-120 (120)
6 cd00890 Prefoldin Prefoldin is 99.9 1.6E-21 3.4E-26 151.5 17.5 128 54-184 2-129 (129)
7 COG1730 GIM5 Predicted prefold 99.8 1.1E-17 2.4E-22 136.1 18.4 128 51-181 6-133 (145)
8 PRK14011 prefoldin subunit alp 99.8 1.2E-17 2.6E-22 135.8 17.9 128 51-184 3-130 (144)
9 PRK01203 prefoldin subunit alp 99.7 1.9E-15 4.2E-20 121.1 16.0 118 55-176 4-121 (130)
10 KOG3048 Molecular chaperone Pr 98.8 4.6E-07 9.9E-12 74.0 15.9 99 70-171 32-130 (153)
11 KOG3047 Predicted transcriptio 98.7 4E-07 8.7E-12 73.6 12.2 82 102-183 65-146 (157)
12 cd00632 Prefoldin_beta Prefold 98.6 6.5E-07 1.4E-11 68.6 9.7 102 54-182 2-103 (105)
13 TIGR02338 gimC_beta prefoldin, 98.5 1.4E-06 3.1E-11 67.3 11.2 107 51-184 3-109 (110)
14 PF01920 Prefoldin_2: Prefoldi 98.1 0.00033 7.1E-09 52.4 14.1 98 57-181 4-101 (106)
15 PRK09343 prefoldin subunit bet 97.3 0.005 1.1E-07 48.6 11.6 109 49-184 5-113 (121)
16 cd00890 Prefoldin Prefoldin is 97.2 0.0032 6.9E-08 48.6 8.8 113 50-175 5-127 (129)
17 COG1382 GimC Prefoldin, chaper 97.1 0.0058 1.3E-07 48.7 9.7 106 52-184 7-112 (119)
18 PRK03947 prefoldin subunit alp 96.6 0.048 1E-06 43.3 11.5 110 58-183 6-128 (140)
19 KOG4098 Molecular chaperone Pr 96.6 0.022 4.9E-07 46.2 9.3 97 53-176 17-113 (140)
20 TIGR00293 prefoldin, archaeal 96.4 0.076 1.7E-06 41.3 11.0 105 61-182 2-119 (126)
21 cd00584 Prefoldin_alpha Prefol 95.6 0.3 6.6E-06 38.1 11.1 108 50-174 5-126 (129)
22 KOG3130 Uncharacterized conser 91.6 0.56 1.2E-05 44.6 6.7 86 85-174 30-115 (514)
23 PRK01203 prefoldin subunit alp 89.8 2.4 5.2E-05 34.3 8.0 104 69-183 4-121 (130)
24 PRK14011 prefoldin subunit alp 82.3 11 0.00023 30.9 8.2 62 122-183 48-122 (144)
25 PF07889 DUF1664: Protein of u 74.2 15 0.00031 29.6 6.6 50 139-189 58-107 (126)
26 PF05377 FlaC_arch: Flagella a 71.1 20 0.00043 25.0 5.8 36 147-182 5-40 (55)
27 PF06825 HSBP1: Heat shock fac 69.9 11 0.00024 26.1 4.3 37 55-91 11-47 (54)
28 PF13758 Prefoldin_3: Prefoldi 68.7 11 0.00024 29.3 4.6 49 119-167 45-93 (99)
29 PF09177 Syntaxin-6_N: Syntaxi 67.2 21 0.00045 26.6 5.8 46 48-93 9-67 (97)
30 KOG3478 Prefoldin subunit 6, K 65.5 68 0.0015 25.6 11.0 98 52-176 3-110 (120)
31 PF02388 FemAB: FemAB family; 64.6 32 0.0007 32.1 7.8 50 134-183 234-293 (406)
32 KOG1760 Molecular chaperone Pr 63.8 79 0.0017 25.7 12.0 79 71-175 36-114 (131)
33 KOG2577 Transcription factor E 62.1 18 0.00039 33.9 5.5 73 78-175 105-177 (354)
34 KOG1961 Vacuolar sorting prote 60.7 67 0.0014 32.4 9.3 122 48-190 86-215 (683)
35 PF07097 DUF1359: Protein of u 60.0 53 0.0011 25.2 6.8 84 65-164 9-96 (102)
36 PF09789 DUF2353: Uncharacteri 59.3 1.4E+02 0.003 27.6 10.7 97 52-179 17-116 (319)
37 PTZ00464 SNF-7-like protein; P 57.2 58 0.0013 28.2 7.5 37 139-175 15-51 (211)
38 PF02093 Gag_p30: Gag P30 core 56.4 2.5 5.5E-05 36.8 -1.0 85 28-117 119-208 (211)
39 KOG4117 Heat shock factor bind 56.0 48 0.001 24.1 5.6 35 55-89 24-58 (73)
40 PF08946 Osmo_CC: Osmosensory 54.3 16 0.00034 24.7 2.7 31 139-169 2-32 (46)
41 cd04773 HTH_TioE_rpt2 Second H 53.6 64 0.0014 24.5 6.5 49 138-186 58-108 (108)
42 PF09177 Syntaxin-6_N: Syntaxi 53.6 52 0.0011 24.4 5.9 46 147-192 37-84 (97)
43 PF10805 DUF2730: Protein of u 52.7 50 0.0011 25.3 5.8 44 138-181 31-76 (106)
44 COG1382 GimC Prefoldin, chaper 51.2 55 0.0012 26.1 5.9 96 53-175 15-110 (119)
45 PF06156 DUF972: Protein of un 50.4 93 0.002 24.2 7.0 44 147-190 6-51 (107)
46 PHA02562 46 endonuclease subun 49.6 1.8E+02 0.0039 27.6 10.2 46 125-173 285-330 (562)
47 KOG1655 Protein involved in va 49.4 39 0.00084 29.5 5.1 37 139-175 16-52 (218)
48 KOG0996 Structural maintenance 49.2 76 0.0016 34.4 8.0 126 48-192 782-907 (1293)
49 PF13600 DUF4140: N-terminal d 47.9 73 0.0016 23.6 6.0 36 145-180 66-101 (104)
50 PF12983 DUF3867: Protein of u 47.8 62 0.0013 27.7 6.0 57 29-85 37-93 (186)
51 cd04765 HTH_MlrA-like_sg2 Heli 47.3 24 0.00052 26.6 3.2 36 137-172 58-99 (99)
52 PF14282 FlxA: FlxA-like prote 47.1 97 0.0021 23.7 6.6 48 139-186 16-74 (106)
53 PRK02224 chromosome segregatio 46.6 1.3E+02 0.0029 30.4 9.3 40 139-178 603-642 (880)
54 PF00626 Gelsolin: Gelsolin re 44.6 10 0.00022 26.0 0.8 21 111-134 17-37 (76)
55 PF10241 KxDL: Uncharacterized 43.6 1E+02 0.0023 22.8 6.1 37 147-183 48-84 (88)
56 PF10779 XhlA: Haemolysin XhlA 43.4 88 0.0019 22.1 5.5 30 142-171 20-49 (71)
57 PRK09343 prefoldin subunit bet 41.8 86 0.0019 24.5 5.7 97 53-176 16-112 (121)
58 KOG3436 60S ribosomal protein 41.2 1.3E+02 0.0029 24.2 6.6 42 143-184 6-59 (123)
59 TIGR02894 DNA_bind_RsfA transc 41.1 75 0.0016 26.7 5.5 62 28-90 75-136 (161)
60 PF04129 Vps52: Vps52 / Sac2 f 40.0 1E+02 0.0022 29.8 6.9 124 48-192 25-155 (508)
61 PRK00295 hypothetical protein; 38.4 1.4E+02 0.0031 21.1 7.5 46 139-184 2-47 (68)
62 cd08065 MPN_eIF3h Mpr1p, Pad1p 38.0 2.2E+02 0.0049 25.0 8.3 52 144-195 202-253 (266)
63 cd01106 HTH_TipAL-Mta Helix-Tu 37.7 1E+02 0.0022 22.8 5.4 37 138-177 58-94 (103)
64 PF04977 DivIC: Septum formati 37.2 99 0.0021 21.3 4.9 28 148-175 23-50 (80)
65 PRK11637 AmiB activator; Provi 37.2 2.3E+02 0.005 26.4 8.7 47 140-186 80-126 (428)
66 cd01406 SIR2-like Sir2-like: P 36.9 18 0.00039 30.8 1.2 34 124-157 1-34 (242)
67 PF05308 Mito_fiss_reg: Mitoch 36.8 49 0.0011 29.5 4.0 22 154-175 120-141 (253)
68 cd04776 HTH_GnyR Helix-Turn-He 36.7 1.4E+02 0.0029 23.1 6.1 38 140-177 78-115 (118)
69 PF07889 DUF1664: Protein of u 35.5 1.9E+02 0.0042 23.2 6.8 43 140-182 80-122 (126)
70 cd01107 HTH_BmrR Helix-Turn-He 35.3 1.3E+02 0.0028 22.6 5.7 42 138-181 59-100 (108)
71 cd01109 HTH_YyaN Helix-Turn-He 35.0 2E+02 0.0042 21.7 7.0 29 141-169 78-106 (113)
72 PF13094 CENP-Q: CENP-Q, a CEN 34.8 2.4E+02 0.0052 22.6 8.1 42 148-189 26-67 (160)
73 smart00262 GEL Gelsolin homolo 34.7 27 0.00059 24.9 1.7 15 121-135 32-46 (90)
74 TIGR02338 gimC_beta prefoldin, 34.3 1.5E+02 0.0033 22.5 5.9 96 53-175 12-107 (110)
75 PF04697 Pinin_SDK_N: pinin/SD 34.2 63 0.0014 26.4 3.9 27 143-169 4-30 (134)
76 COG3189 Uncharacterized conser 34.1 65 0.0014 25.7 3.8 48 24-74 26-73 (117)
77 PF04340 DUF484: Protein of un 33.2 2.6E+02 0.0055 23.7 7.7 49 141-189 39-87 (225)
78 PRK00846 hypothetical protein; 33.0 1.7E+02 0.0036 21.7 5.6 30 148-177 12-41 (77)
79 PF12761 End3: Actin cytoskele 33.0 76 0.0017 27.4 4.4 47 134-180 131-184 (195)
80 PRK11637 AmiB activator; Provi 32.5 4.2E+02 0.009 24.7 13.8 38 140-177 94-131 (428)
81 cd00632 Prefoldin_beta Prefold 32.4 1.8E+02 0.0039 21.8 6.0 37 139-175 67-103 (105)
82 PF02996 Prefoldin: Prefoldin 31.7 2.1E+02 0.0045 21.4 6.3 44 48-91 74-117 (120)
83 PF06156 DUF972: Protein of un 31.5 1.1E+02 0.0025 23.6 4.8 13 164-176 44-56 (107)
84 PF13747 DUF4164: Domain of un 30.8 2.2E+02 0.0048 21.2 6.1 29 136-164 2-30 (89)
85 PF02520 DUF148: Domain of unk 30.5 1.7E+02 0.0038 22.0 5.7 58 27-89 14-71 (113)
86 PF15619 Lebercilin: Ciliary p 30.4 3.4E+02 0.0074 23.1 15.0 103 50-193 67-169 (194)
87 cd01109 HTH_YyaN Helix-Turn-He 29.9 1.7E+02 0.0037 22.0 5.5 46 137-182 57-105 (113)
88 PRK09039 hypothetical protein; 29.8 4.4E+02 0.0096 24.2 12.5 51 47-97 49-99 (343)
89 PF11853 DUF3373: Protein of u 29.4 56 0.0012 32.0 3.3 34 144-178 27-60 (489)
90 PRK00736 hypothetical protein; 29.3 2.1E+02 0.0046 20.3 7.4 46 139-184 2-47 (68)
91 PF10805 DUF2730: Protein of u 28.9 2.2E+02 0.0049 21.7 6.0 42 140-181 40-83 (106)
92 KOG4196 bZIP transcription fac 28.7 2.6E+02 0.0056 22.9 6.5 44 144-187 76-119 (135)
93 KOG4797 Transcriptional regula 28.4 2.8E+02 0.006 22.2 6.4 43 134-182 44-86 (123)
94 PHA02562 46 endonuclease subun 28.2 5.2E+02 0.011 24.4 12.7 32 60-91 162-193 (562)
95 cd04779 HTH_MerR-like_sg4 Heli 27.6 3.2E+02 0.0068 21.8 6.9 50 137-187 56-105 (134)
96 cd04766 HTH_HspR Helix-Turn-He 27.5 1.5E+02 0.0032 21.5 4.6 30 138-172 59-88 (91)
97 PF04102 SlyX: SlyX; InterPro 27.5 2.2E+02 0.0048 20.0 7.6 44 141-184 3-46 (69)
98 PRK09039 hypothetical protein; 27.4 2E+02 0.0043 26.5 6.4 38 144-181 139-176 (343)
99 COG1842 PspA Phage shock prote 27.3 4.2E+02 0.0091 23.1 11.2 104 48-181 28-131 (225)
100 PF13094 CENP-Q: CENP-Q, a CEN 26.3 1.4E+02 0.003 24.0 4.7 31 142-172 41-71 (160)
101 PRK10865 protein disaggregatio 26.1 60 0.0013 33.5 3.1 70 28-97 270-356 (857)
102 PF10552 ORF6C: ORF6C domain; 25.8 1.1E+02 0.0025 23.4 4.0 36 142-177 1-36 (116)
103 KOG1760 Molecular chaperone Pr 25.7 2.1E+02 0.0046 23.3 5.5 18 163-180 95-112 (131)
104 PRK00736 hypothetical protein; 25.7 2.5E+02 0.0053 19.9 5.6 36 148-183 4-39 (68)
105 PF15219 TEX12: Testis-express 25.3 1.9E+02 0.0042 22.4 4.9 36 53-88 63-98 (100)
106 KOG0608 Warts/lats-like serine 25.3 3E+02 0.0066 28.8 7.6 101 49-162 573-684 (1034)
107 cd01282 HTH_MerR-like_sg3 Heli 25.2 2.9E+02 0.0064 20.8 6.1 44 138-181 57-106 (112)
108 PF09304 Cortex-I_coil: Cortex 25.2 1.9E+02 0.0042 22.7 5.1 36 55-90 41-76 (107)
109 PF06103 DUF948: Bacterial pro 25.1 2.7E+02 0.0058 20.1 5.8 37 147-183 24-60 (90)
110 PF01920 Prefoldin_2: Prefoldi 24.8 2.4E+02 0.0052 20.4 5.4 46 41-89 55-100 (106)
111 PF05008 V-SNARE: Vesicle tran 24.5 1.8E+02 0.0039 20.3 4.5 18 160-177 29-46 (79)
112 PRK14092 2-amino-4-hydroxy-6-h 24.2 49 0.0011 27.5 1.7 29 121-149 5-34 (163)
113 PRK05771 V-type ATP synthase s 24.1 2.9E+02 0.0064 27.3 7.3 48 138-185 82-129 (646)
114 COG1730 GIM5 Predicted prefold 24.1 4E+02 0.0088 21.8 14.4 36 140-175 99-134 (145)
115 PF06810 Phage_GP20: Phage min 24.1 2.9E+02 0.0064 22.5 6.3 40 141-180 26-68 (155)
116 KOG0804 Cytoplasmic Zn-finger 23.8 4.3E+02 0.0092 26.0 8.0 50 139-194 372-421 (493)
117 PF05103 DivIVA: DivIVA protei 23.7 32 0.00069 26.3 0.5 39 48-86 22-60 (131)
118 PF09278 MerR-DNA-bind: MerR, 23.6 2.3E+02 0.005 18.8 5.0 23 139-161 33-55 (65)
119 PRK14127 cell division protein 23.5 2E+02 0.0043 22.5 4.9 44 36-83 26-69 (109)
120 cd04769 HTH_MerR2 Helix-Turn-H 23.5 3.2E+02 0.0069 20.7 6.1 37 139-175 76-112 (116)
121 PF09340 NuA4: Histone acetylt 23.5 1.9E+02 0.0042 21.1 4.6 30 149-178 2-31 (80)
122 PF04065 Not3: Not1 N-terminal 23.4 3.6E+02 0.0077 23.8 7.0 36 136-171 116-151 (233)
123 PF11221 Med21: Subunit 21 of 23.3 3E+02 0.0065 22.0 6.1 62 27-88 60-138 (144)
124 PRK05685 fliS flagellar protei 23.3 2.7E+02 0.0058 22.0 5.7 50 140-189 32-94 (132)
125 cd04770 HTH_HMRTR Helix-Turn-H 23.2 3.4E+02 0.0073 20.6 6.5 10 139-148 59-68 (123)
126 PHA03011 hypothetical protein; 22.8 2.4E+02 0.0051 22.3 5.1 38 144-181 80-117 (120)
127 PRK04325 hypothetical protein; 22.2 3.1E+02 0.0066 19.7 7.3 44 141-184 8-51 (74)
128 PRK13182 racA polar chromosome 22.1 2.2E+02 0.0047 23.9 5.2 33 139-171 82-114 (175)
129 KOG3478 Prefoldin subunit 6, K 21.4 2.9E+02 0.0063 22.1 5.4 28 156-183 69-96 (120)
130 PHA03385 IX capsid protein IX, 21.3 2E+02 0.0043 23.4 4.5 34 140-173 98-131 (135)
131 PRK00295 hypothetical protein; 21.1 3.1E+02 0.0067 19.4 5.8 27 150-176 6-32 (68)
132 cd04775 HTH_Cfa-like Helix-Tur 21.1 2.2E+02 0.0047 21.2 4.6 12 138-149 58-69 (102)
133 PF08418 Pol_alpha_B_N: DNA po 21.1 71 0.0015 27.5 2.2 33 56-88 202-234 (253)
134 PRK02793 phi X174 lysis protei 20.7 3.3E+02 0.0071 19.5 7.1 45 140-184 6-50 (72)
135 PRK13169 DNA replication intia 20.7 2.4E+02 0.0051 22.1 4.8 29 147-175 6-34 (110)
136 COG4942 Membrane-bound metallo 20.5 5.6E+02 0.012 24.7 8.1 48 139-186 63-110 (420)
137 PRK02119 hypothetical protein; 20.4 3.4E+02 0.0073 19.5 7.4 44 141-184 8-51 (73)
138 COG1293 Predicted RNA-binding 20.4 7.5E+02 0.016 24.4 9.3 39 131-171 377-418 (564)
139 COG0361 InfA Translation initi 20.3 1.8E+02 0.0038 21.5 3.8 36 104-139 20-58 (75)
140 PF04508 Pox_A_type_inc: Viral 20.3 98 0.0021 17.9 1.9 18 74-91 3-20 (23)
141 TIGR02043 ZntR Zn(II)-responsi 20.2 3.3E+02 0.0072 21.2 5.7 25 140-164 79-103 (131)
142 KOG4687 Uncharacterized coiled 20.1 4.2E+02 0.0091 24.6 6.9 44 27-70 209-258 (389)
143 PRK04863 mukB cell division pr 20.1 8.6E+02 0.019 27.2 10.3 95 48-174 569-663 (1486)
144 cd01282 HTH_MerR-like_sg3 Heli 20.1 2.8E+02 0.0062 20.9 5.1 36 137-172 76-111 (112)
145 TIGR00208 fliS flagellar biosy 20.0 3.9E+02 0.0085 20.8 6.0 50 140-189 28-90 (124)
No 1
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-68 Score=441.61 Aligned_cols=174 Identities=55% Similarity=0.867 Sum_probs=166.6
Q ss_pred CCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 028810 23 TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGE 102 (203)
Q Consensus 23 ~~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e 102 (203)
.+++||||+|+|||||++|+++|+......++.||++|+||||||.++.+++.+|+.|||||+++|++|+.|.++++.++
T Consensus 9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~ 88 (187)
T KOG3313|consen 9 SKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGE 88 (187)
T ss_pred hhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCc
Confidence 68999999999999999999999833333499999999999999999999999999999999999999999999988888
Q ss_pred CeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 103 ~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
.++++|+|+||+|++|.|||+++|||||||||||||+++||.+||++|+.+++++++.+++||+||||||||||||||||
T Consensus 89 s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~Arv 168 (187)
T KOG3313|consen 89 SFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMARV 168 (187)
T ss_pred ceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHH
Q 028810 183 YNWDVHQRRIRQAA 196 (203)
Q Consensus 183 yN~dV~~r~~~~~~ 196 (203)
|||||++||+.+..
T Consensus 169 YNw~V~~R~~~~~t 182 (187)
T KOG3313|consen 169 YNWDVKKRRAAKAT 182 (187)
T ss_pred eechHHHHHHHhhc
Confidence 99999999987653
No 2
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.95 E-value=1.3e-26 Score=184.79 Aligned_cols=132 Identities=27% Similarity=0.346 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEE
Q 028810 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (203)
Q Consensus 49 ~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~L 128 (203)
.++-++.++++|++|+++...|.+++..|...+|+++.++++|+.|..+ .++.+++||||+++|++|+|+++++|++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~---~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK---GEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 4677999999999999999999999999999999999999999999864 3679999999999999999999999999
Q ss_pred ecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 129 wLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
|||+||||||+++||+++|++|++.++++++.+.++|.++++++..+.-.+.+++
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888865
No 3
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.94 E-value=1e-25 Score=176.46 Aligned_cols=124 Identities=26% Similarity=0.342 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.+..++++|+.+...|.+++..|...+++++.++++|+.|..+ ++.+++||||+++|++|+|+++++|++|||+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~ 76 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGS 76 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCC
Confidence 357889999999999999999999999999999999999999742 5789999999999999999999999999999
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
|||||++++||+++|++|++.+.++++.+.+++.++++|++.+.--+.
T Consensus 77 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 77 GYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999876543
No 4
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.93 E-value=1.1e-24 Score=171.14 Aligned_cols=128 Identities=24% Similarity=0.349 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (203)
Q Consensus 54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn 133 (203)
+.++..+++|+..-..+++++..|...+++...++++|+.|... ..+.++++|||.++|++|+|+++++||+|||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g 78 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence 57889999999999999999999999999999999999999753 467999999999999999999999999999999
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
+|||++++||+++|+++++.++++++.+.+++.+++++++.++.+++++|.
T Consensus 79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~ 129 (129)
T cd00584 79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ 129 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999874
No 5
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.90 E-value=8.1e-23 Score=157.71 Aligned_cols=120 Identities=25% Similarity=0.338 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHH
Q 028810 63 YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142 (203)
Q Consensus 63 Yk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~E 142 (203)
|+..-.++.+++..|...+.++..++++|+.|.. ...+.++++|||+++|++|+|+++++|++|||+|+++|+|++|
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e 77 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE 77 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence 3444568899999999999999999999999986 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 143 ATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNW 185 (203)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~ 185 (203)
|+++|++|++.+++.++.+...+..++++++.++..++++|+|
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999997
No 6
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.89 E-value=1.6e-21 Score=151.49 Aligned_cols=128 Identities=30% Similarity=0.372 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (203)
Q Consensus 54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn 133 (203)
+.+...+++|+..-..+++++..+...+++++.+++.|+.|... .++.+...|+|+++|++|.|+++++|++|||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~ 78 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKA---EEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence 56788999999999999999999999999999999999999864 456778899999999999999999999999999
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++||++++||.++|.++++.+++.++.+++++..++++|+.++.+|+++|+
T Consensus 79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999874
No 7
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-17 Score=136.14 Aligned_cols=128 Identities=26% Similarity=0.362 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL 130 (203)
.-++.+...|+-|+.+-+.|++++..|...+-++..|+++|+.|+.. +++-+++||+|.|+|++|+|.++|+|++.|
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~---~~g~E~LVpvGag~fv~~kv~~~~kviV~i 82 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA---GEGKEVLVPVGAGLFVKAKVKDMDKVIVSI 82 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceEEEEcCCCceEEEEeccCceEEEEc
Confidence 45778999999999999999999999999999999999999999875 235699999999999999999999999999
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
|+||.+|.+++||+++|+++++.+.+.++++.+.|+.|-.+++.++.-+..
T Consensus 83 Gsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 83 GSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred CCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876665
No 8
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.79 E-value=1.2e-17 Score=135.78 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL 130 (203)
+-++.+...|+.|+.+-+.|++++..|..-+-++..|+++|+.+. .+-++++|||.|+|++|+|.++|+|++.|
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdI 76 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGV 76 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEc
Confidence 347788889999999999999999999999999999999999663 46899999999999999999999999999
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
|+|++||.+++||+++++++++.++++.+++.+.|+.+++++..++.-+..-|.
T Consensus 77 GtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~ 130 (144)
T PRK14011 77 GSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ 130 (144)
T ss_pred cCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988777644
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=99.68 E-value=1.9e-15 Score=121.09 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccce
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV 134 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnV 134 (203)
.+.+.|+-|+.+-+.|.+++..|+..+-++..|++.|+.+.. +++-++++|||.++|++|+|.++++|++.+|+|+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 456788899999999999999999999999999999888642 4568999999999999999999999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 135 mvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
+||.+.++++++|+++++.+++.+......+..|.+++..+-
T Consensus 80 ~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 80 YIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 10
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.6e-07 Score=74.04 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=77.4
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHH
Q 028810 70 LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQK 149 (203)
Q Consensus 70 l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~ 149 (203)
++..+..|..--.-...+++.|+.++. ..++-+.++||+..+|+.+++.+.+++.+-+|-|-+||.+.++|+++.++
T Consensus 32 lq~Sl~~L~~aq~k~~~~~~aln~~~~---~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkR 108 (153)
T KOG3048|consen 32 LQDSLNALKGAQTKYEESIAALNDVQA---ANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKR 108 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHH
Confidence 333333333333334445555556654 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028810 150 NLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 150 ~l~~a~~~l~~~~edL~fLrdQ 171 (203)
+++-+.+++++++.-+..=+..
T Consensus 109 Kve~l~kq~e~i~~i~~eK~~~ 130 (153)
T KOG3048|consen 109 KVEYLTKQIEQIEGILKEKTRT 130 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776654443
No 11
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=98.69 E-value=4e-07 Score=73.56 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 102 e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
.+++....||.++|+.-.||+|.+|++-||-+++||.++.||+++...+...++.-.+++..|--.|+..|+.+=.-|..
T Consensus 65 kel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~e 144 (157)
T KOG3047|consen 65 KELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGLDE 144 (157)
T ss_pred hhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999988766655
Q ss_pred HH
Q 028810 182 VY 183 (203)
Q Consensus 182 vy 183 (203)
+|
T Consensus 145 lq 146 (157)
T KOG3047|consen 145 LQ 146 (157)
T ss_pred hc
Confidence 54
No 12
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=98.56 E-value=6.5e-07 Score=68.55 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccc
Q 028810 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (203)
Q Consensus 54 ~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAn 133 (203)
+.+...|++|+..-..+.+++..|...+-+.+.+++.|..|. ++-.+++.+|+
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~------~d~~vy~~VG~--------------------- 54 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA------DDAEVYKLVGN--------------------- 54 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CcchHHHHhhh---------------------
Confidence 456788999999999999999999999999999999888873 23333344443
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
|+|+.|.+||...|+++++.++..++.+...+..|..++...+.++..+
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887653
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=98.54 E-value=1.4e-06 Score=67.31 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL 130 (203)
+-++.+...|++|+..-..+.+++..|...+-+.+.+++.+..|. |..+||-.+
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~V 56 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSV 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHh
Confidence 346778888899999899999999999999999999999888773 234555556
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
|. |+|+.+.+||+.-|+++++.++..++.+++.+.+|+.++..++-++..+++
T Consensus 57 G~-vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 57 GN-LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred ch-hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64 999999999999999999999999999999999999999999999988764
No 14
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=98.06 E-value=0.00033 Score=52.37 Aligned_cols=98 Identities=18% Similarity=0.301 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceee
Q 028810 57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVML 136 (203)
Q Consensus 57 qe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmv 136 (203)
+..|+.++..-..+.+++..|...+-+++.+++.|..|. |..+||.-+| +++|
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~--------------------------~~~~~y~~vG-~~fv 56 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD--------------------------DDRKVYKSVG-KMFV 56 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------------TT-EEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CcchhHHHHh-HHHH
Confidence 344455555555666777788888888888877776662 3345565664 6899
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
+.|.+++...|+++++.++..++.+...+.++..++..++.++..
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887653
No 15
>PRK09343 prefoldin subunit beta; Provisional
Probab=97.35 E-value=0.005 Score=48.63 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEE
Q 028810 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (203)
Q Consensus 49 ~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~L 128 (203)
..+-++..-..|++++..-..+.+++..|...+-+++.+++-+..|. +..+||-
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~--------------------------~d~~VYk 58 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP--------------------------DDTPIYK 58 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHH
Confidence 44556677777777888788889999999999999999988877773 2334555
Q ss_pred ecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 129 wLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
.+| .|+|-=+.+||+.-|+++++.++..++.++....+|+.++..++.++..+..
T Consensus 59 ~VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 59 IVG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred Hhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 4778889999999999999999999999999999999999999999987653
No 16
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=97.18 E-value=0.0032 Score=48.59 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh----------cCCCCeeEEEEcccceeeeEE
Q 028810 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK----------EGGEALTADFEVSEGIFSRAR 119 (203)
Q Consensus 50 e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~----------~~~e~~et~f~L~d~~y~kA~ 119 (203)
...++.++..++++...-..+.+++..++..+-.|+..-+......--. .-.++-++.++||.|+|++..
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~ 84 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Confidence 3456778888888888777777777666655554444432222211000 001467789999999999999
Q ss_pred eCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 120 I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
++.. +-.+++.++.|+++++.+++.+..+...+..|+.+|...
T Consensus 85 ~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8765 367999999999999999999999999999999998754
No 17
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0058 Score=48.70 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecc
Q 028810 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (203)
Q Consensus 52 ~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLG 131 (203)
-++..-..|++++..-..+..++..++..+-|++++|+=+..|.. + ..||-.+|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e------D--------------------~~vYk~VG 60 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE------D--------------------APVYKKVG 60 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------c--------------------cHHHHHhh
Confidence 345555566677777778889999999999999999998887742 1 13444444
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 132 AnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
|+.|.-+.++|.+=|+++++.++..++.++..-..+++++..+...+-..|+
T Consensus 61 -~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 61 -NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred -hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666668899999999999999999999999999999998888888877665
No 18
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.63 E-value=0.048 Score=43.31 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeee
Q 028810 58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE 137 (203)
Q Consensus 58 e~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvE 137 (203)
..++.+..+-..+.++...|..++..+...+.-++....- ++ +.++. .....|++-||+++++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~------l~---------~l~~~-~~~~e~lvplg~~~yv~ 69 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET------LE---------ELKSK-GEGKETLVPIGAGSFVK 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hhccc-CCCCeEEEEcCCCcEEE
Confidence 4455666666678899999999999999998877766532 22 12222 24689999999999999
Q ss_pred eCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATV-------------LLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 138 y~l~EA~~-------------lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
-.+.+..+ -+.+-++.+++.++.+...++.|.+++..+.-.+..++
T Consensus 70 ~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 70 AKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred EEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876655 45677777777777788888888888777777776654
No 19
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.022 Score=46.22 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
-+.++..|+.|+..-..|.+.+..|+...-+.+--|++|+.|. |+-++|=.+ .
T Consensus 17 q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfRmI-g 69 (140)
T KOG4098|consen 17 QQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFRMI-G 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHHHh-c
Confidence 3578889999999999999999999999999999988888773 223333333 5
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
||-|||++.|-+=.|+.|++.++..+..+.++|...-..++.-.
T Consensus 70 GvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk 113 (140)
T KOG4098|consen 70 GVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFK 113 (140)
T ss_pred cchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988887777644
No 20
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=96.37 E-value=0.076 Score=41.28 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCH
Q 028810 61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140 (203)
Q Consensus 61 ~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l 140 (203)
+.+..+-..+.+++..|..++.++..++..++....- +. +.+.. ....+++-||+++++.-.+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~------L~---------~l~~~--~~~~~lv~lg~~~~v~~~v 64 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIET------LE---------DLKGA--EGKETLVPVGAGSFVKAKV 64 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hcccc--CCCeEEEEcCCCeEEEEEe
Confidence 3455666778899999999999999999988887642 21 11222 4578999999999999999
Q ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEAT-------------VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 141 ~EA~-------------~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
.+.. .-+.+-++-+++.++.+.+.++.|...+....-.+..+
T Consensus 65 ~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 65 KDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred CCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 45577777777777777777777777777777666664
No 21
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=95.57 E-value=0.3 Score=38.05 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc--------------CCCCeeEEEEccccee
Q 028810 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE--------------GGEALTADFEVSEGIF 115 (203)
Q Consensus 50 e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~--------------~~e~~et~f~L~d~~y 115 (203)
...++.++..++..+..-..+..++..+..-+ .+|+.+.......+ -.++-+..++||.|+|
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~----~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 5 AAQLQVLQQEIEELQQELARLNEAIAEYEQAK----ETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence 34566777777777777777777777765544 44444444221111 1245678999999999
Q ss_pred eeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (203)
Q Consensus 116 ~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt 174 (203)
+...++... -.++.-++.|+++++.+++.+..+..++..+...+..
T Consensus 81 vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 81 VEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987654 4689999999999999999999999999999988764
No 22
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=0.56 Score=44.65 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 85 EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIAD 164 (203)
Q Consensus 85 kktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~ed 164 (203)
.+.++-+..|-++ =....+++||.-.|.-..+--|..|.+.+|+|-+-+-+.--|.++++-|++.+.++++.+...
T Consensus 30 e~~~erl~~~~kk----Ls~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~~~ 105 (514)
T KOG3130|consen 30 EALRERLSTLPKK----LSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRKEHVRKQIDDLKKV 105 (514)
T ss_pred HHHHHHHHHhhhh----cccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555543 358899999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHH
Q 028810 165 LQFLRDQVTI 174 (203)
Q Consensus 165 L~fLrdQItt 174 (203)
+.-+-.|+.-
T Consensus 106 ~~n~~~~vkf 115 (514)
T KOG3130|consen 106 MKNFESRVKF 115 (514)
T ss_pred HHhhHHHhhh
Confidence 6666655543
No 23
>PRK01203 prefoldin subunit alpha; Provisional
Probab=89.77 E-value=2.4 Score=34.31 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHhhhcC-CCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHH-
Q 028810 69 KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEG-GEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL- 146 (203)
Q Consensus 69 ~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~-~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~l- 146 (203)
.+..+++.++++|..+..-++.++.-..+-.. -+.++. ..-++...|.+=||++.+|-=.+.+..++
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~-----------~~~~~~~eiLVPLg~slYV~gki~d~~kVl 72 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD-----------NELDNSKELLISIGSGIFADGNIKKDKDLI 72 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------cccCCCCeEEEEccCCceEeEEecCCCeEE
Confidence 44556666666666666666666665544111 112222 11234678999999999998888777653
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 147 ------------LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 147 ------------L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
+.++++.+++++++++.-+...+.++..++-+++.++
T Consensus 73 VdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 73 VPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999887
No 24
>PRK14011 prefoldin subunit alpha; Provisional
Probab=82.31 E-value=11 Score=30.92 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCCeEEEecccceeeeeCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 122 DTDSVCLWLGANVMLEYSCDEATVL-------------LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 122 ~tdkV~LwLGAnVmvEy~l~EA~~l-------------L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
+...|.+-||++++|-=.+.+..++ +.+=+.-+++.++.++..++.|.+.|..+..++.+|=
T Consensus 48 ~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 48 TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998888886553 3455666666777777777777777777777777764
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.21 E-value=15 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
.+..|++.|..||..+..++++..+-..-++++++.+..+++++. +||..
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~-~dv~~ 107 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG-DDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHH
Confidence 577899999999999999999999999999999999999999874 55543
No 26
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.13 E-value=20 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
|+.++..++..+..++..++.|++.+..++-|+.+|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888888888775
No 27
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=69.86 E-value=11 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V 91 (203)
.|+.+-.||+-|...+..++..+-.+|-++++++.-+
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5666668999999999999999999999999997643
No 28
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=68.72 E-value=11 Score=29.26 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=39.5
Q ss_pred EeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 119 RIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQF 167 (203)
Q Consensus 119 ~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~f 167 (203)
++...+.|---||-+.++..+-+.++.+|.+|+.-.++++..++..|.-
T Consensus 45 ~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~ 93 (99)
T PF13758_consen 45 SLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEA 93 (99)
T ss_pred ccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667789999999999999999999998888888877776653
No 29
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=67.22 E-value=21 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhchhhHHHHHHHHHH
Q 028810 48 DVNSALAFLQERLQQYKLV-------------EMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~m-------------e~~l~qq~~~L~~kIpdikktLe~V~~ 93 (203)
+++..+..++..|+.|..+ ...|..-+..++..+-|+.+|+.++..
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999999886 457778888888899999999888753
No 30
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=68 Score=25.60 Aligned_cols=98 Identities=15% Similarity=0.278 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEE
Q 028810 52 ALAFLQERLQQYKLVEMKL---LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (203)
Q Consensus 52 ~l~~lqe~~~KYk~me~~l---~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~L 128 (203)
..+.+++...||+.....+ ...+..|+.++.+-+--++=+..|. |..+||=
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle--------------------------~d~~VYK 56 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLE--------------------------EDSNVYK 56 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--------------------------ccchHHH
Confidence 3456777777777776543 4556666777777666666666663 2334555
Q ss_pred ecccceeeeeCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 129 WLGANVMLEYSCDEATVLLQKN-------LENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 129 wLGAnVmvEy~l~EA~~lL~~~-------l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
.+| .|.|--.++||..-..+| ++.++.++..+.+++..-|+-+..++
T Consensus 57 liG-pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 57 LIG-PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred Hhc-chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 477888889987655555 45555555555555555555544433
No 31
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=64.63 E-value=32 Score=32.09 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=39.1
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAKASLEVLIAD----------LQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~ed----------L~fLrdQItt~EVn~ARvy 183 (203)
++.+++++++++-|+.++..+++.++++.+. +.-+.+|+...+..++.+-
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999997 4555556665555555543
No 32
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=63.79 E-value=79 Score=25.69 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHH
Q 028810 71 LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKN 150 (203)
Q Consensus 71 ~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~ 150 (203)
...+...+.+|..|..+.+=|..+-+ +.-...|.+||- ++-.+.+.-.+.|+..
T Consensus 36 k~dik~~k~~~enledA~~EieL~De-----dd~~Ip~~vGdv---------------------F~~~~~~~~~~~LEe~ 89 (131)
T KOG1760|consen 36 KADIKEAKTEIENLEDASNEIELLDE-----DDEDIPFKVGDV---------------------FIHVKLDKLQDQLEEK 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCc-----cccccceehhhh---------------------heeccHHHHHHHHHHH
Confidence 33444445555566666655555532 223344777653 3344556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 151 LENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 151 l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
.+.+.+.+..++..++-|..+|..+
T Consensus 90 ke~l~k~i~~les~~e~I~~~m~~L 114 (131)
T KOG1760|consen 90 KETLEKEIEELESELESISARMDEL 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555555443
No 33
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=62.14 E-value=18 Score=33.86 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=56.1
Q ss_pred HhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHH
Q 028810 78 QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKAS 157 (203)
Q Consensus 78 ~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~ 157 (203)
+.+|=||...|+=|..++++ ...=+-|+|.|.|---...|=...|+.+++.+...
T Consensus 105 KRRIYDITNVLEGI~LIeKk-------------------------sKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~ 159 (354)
T KOG2577|consen 105 KRRIYDITNVLEGIGLIEKK-------------------------SKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQE 159 (354)
T ss_pred cceeeehhhhhhcccceeec-------------------------cccceeeecCCCccccccHHHHHHHHHHHHHHHHH
Confidence 55667777777777777654 34456799999997556677788888899888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028810 158 LEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 158 l~~~~edL~fLrdQItt~ 175 (203)
-+.+.+-+.+.++++..+
T Consensus 160 E~~LD~~i~~~q~~L~~l 177 (354)
T KOG2577|consen 160 EDDLDQLIRDCQQNLRLL 177 (354)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887654
No 34
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=60.69 E-value=67 Score=32.43 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
+++.+|.+++.++..++---.++.+.+..|+.|=-++.--|+--+....+-. -|+.--+-|++-|-
T Consensus 86 ~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls--------------~fVdd~iVpp~lI~ 151 (683)
T KOG1961|consen 86 ACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLS--------------QFVDDLIVPPELIK 151 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH--------------HHhccccCCHHHHH
Confidence 6778888888888888888888999999998888888887776665554421 03333344444222
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAK--------ASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 190 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~--------~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r 190 (203)
.-+-+ =+=|-++-+|.+-|..+++..+ ++.+.+..-|+.||. +.+.|||+|-|.+=
T Consensus 152 ~I~~g-~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~------KAi~kir~~IlqkI 215 (683)
T KOG1961|consen 152 TIVDG-DVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRL------KAIEKIREFILQKI 215 (683)
T ss_pred HHHcC-CCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 21212 2234477889999999988877 445666666777775 56899999999773
No 35
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=59.97 E-value=53 Score=25.24 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCC-CCeeEEEEcccc---eeeeEEeCCCCeEEEecccceeeeeCH
Q 028810 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG-EALTADFEVSEG---IFSRARIEDTDSVCLWLGANVMLEYSC 140 (203)
Q Consensus 65 ~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~-e~~et~f~L~d~---~y~kA~I~~tdkV~LwLGAnVmvEy~l 140 (203)
.+-+.++++..+|+.-|-+++.--+.|+.+..+-..+ =+-.+.|.+.=| .|.+.. |-+ +.
T Consensus 9 ~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~~i~~~~Kf~~~L~~~~~~~~~~------~~I----------~V 72 (102)
T PF07097_consen 9 EQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNNHIKKDTKFELNLGDRFGVLKCS------VKI----------NV 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCcchhceecccccceEEEe------eec----------ch
Confidence 3445677888888888888988888888888762222 123344433333 233332 222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIAD 164 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~ed 164 (203)
---+.||++|++.-..-..++...
T Consensus 73 GTLI~LL~~NIE~NT~l~~EL~~~ 96 (102)
T PF07097_consen 73 GTLIPLLEQNIEDNTTLISELAKE 96 (102)
T ss_pred hhhhHHHHhccccchHHHHHHHHH
Confidence 345678888877666555554443
No 36
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.31 E-value=1.4e+02 Score=27.63 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecc
Q 028810 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (203)
Q Consensus 52 ~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLG 131 (203)
-|..++....+||.|.+.|+.+...|+.+.-++.-. -. -|....++|..
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~-------~~-----------------~~~d~~~~~~~------- 65 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE-------AA-----------------GFGDPSIPPEK------- 65 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hc-----------------ccCCccCCccc-------
Confidence 367889999999999999999999888777654421 00 01222222222
Q ss_pred cceeeee---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 132 ANVMLEY---SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTV 179 (203)
Q Consensus 132 AnVmvEy---~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ 179 (203)
-++-+.- ..-|.-.-|...+..+...+..+..|+.-||.++....+-.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 1121111 23445566777888899999999999999999988766543
No 37
>PTZ00464 SNF-7-like protein; Provisional
Probab=57.16 E-value=58 Score=28.19 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
++.||+.-|.+++..+.+.++++...+...|+++..+
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999644
No 38
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=56.41 E-value=2.5 Score=36.82 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 028810 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLL-----AQQRDLQAKIPDIEKCLDIVATLQAKKEGGE 102 (203)
Q Consensus 28 gIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~-----qq~~~L~~kIpdikktLe~V~~L~~k~~~~e 102 (203)
+.|+..-+..|.+.+..++.++-.-|++|.+.|.+|--+.-.-. =.+.-+-+.-|||.+-|.-++-+.. .
T Consensus 119 aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~dP~~~~~~~~v~~~Fi~QsapDIrkKLq~~eg~~~-----~ 193 (211)
T PF02093_consen 119 AARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTPFDPESPEGQASVAMSFITQSAPDIRKKLQKLEGLQG-----K 193 (211)
T ss_dssp HHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS-------------------------------------------
T ss_pred cCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHhccHHHHHHHHhhcCccc-----C
Confidence 45666667778888877756788899999999999976653322 2334456777999999998888863 5
Q ss_pred CeeEEEEcccceeee
Q 028810 103 ALTADFEVSEGIFSR 117 (203)
Q Consensus 103 ~~et~f~L~d~~y~k 117 (203)
++.=++.+++.||.+
T Consensus 194 ~l~~Ll~~A~kVf~~ 208 (211)
T PF02093_consen 194 TLSELLKEAEKVFNN 208 (211)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHhc
Confidence 677788888888864
No 39
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=48 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe 89 (203)
.||..-.||+-|...+..+...+-.+|.|++|++.
T Consensus 24 lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIa 58 (73)
T KOG4117|consen 24 LLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIA 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 45666679999999999999999999999999976
No 40
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=54.31 E-value=16 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLR 169 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLr 169 (203)
+..||+++|.......+..++.+.+.+.-|.
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHH
Confidence 3579999999888888777776665444443
No 41
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=53.62 E-value=64 Score=24.45 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=38.1
Q ss_pred eCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNL--ENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD 186 (203)
Q Consensus 138 y~l~EA~~lL~~~l--~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~d 186 (203)
+|++|...+|..-- .......+.+++-+..|.+|+..+.-.++++|+|.
T Consensus 58 ~~l~~I~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 108 (108)
T cd04773 58 YLLEQIATVVEQLRHAGGTEALAAALEQRRVALTQRGRAMLDAAAALAAYL 108 (108)
T ss_pred CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999987531 11345567788888889999999999999999873
No 42
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=53.60 E-value=52 Score=24.43 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHH
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV--YNWDVHQRRI 192 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv--yN~dV~~r~~ 192 (203)
+..-...+...++.+++||+.|..=|..+|.|-+|. =.-.+.+||.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~ 84 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQ 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHH
Confidence 444567788889999999999999999999998883 3445555554
No 43
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.70 E-value=50 Score=25.30 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=26.6
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFL--RDQVTITQVTVAR 181 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fL--rdQItt~EVn~AR 181 (203)
|.-.+..+-|.+++......+..++..++.+ ++.+..+++.|++
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~e 76 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAE 76 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4556777777555555566666666655555 5555555555554
No 44
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.24 E-value=55 Score=26.14 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.|+..++++-..-.++..++.-...-+-+|.+.=+== -+-. .-+++|++..=+ .
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~-~vYk-------------~VG~llvk~~k~---~------- 70 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDA-PVYK-------------KVGNLLVKVSKE---E------- 70 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-HHHH-------------HhhhHHhhhhHH---H-------
Confidence 344555566666666667777776665555554322110 1111 112334443211 1
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
+--.+++=.++|+.+++.++++.+.+.+-++.|+..|...
T Consensus 71 ---~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 71 ---AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1237899999999999999999999999999999988653
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.38 E-value=93 Score=24.15 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHhh
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTITQ-VTV-ARVYNWDVHQR 190 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~E-Vn~-ARvyN~dV~~r 190 (203)
|-+++..++.++..+..++.-|+.+|..+. -|. =|+=|.-.+.|
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888876543 222 23445544443
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.61 E-value=1.8e+02 Score=27.60 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=28.3
Q ss_pred eEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (203)
Q Consensus 125 kV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQIt 173 (203)
.+|--.|-...=. ..-...|.+++..++..++.+...+.-+...+.
T Consensus 285 ~~Cp~C~~~~~~~---~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 285 GVCPTCTQQISEG---PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred CCCCCCCCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444322 667777778888888887777777774444333
No 47
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.37 E-value=39 Score=29.54 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
++.+|+.-+.+|-.++++.+.++..+|-.+|+||..|
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999887
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.18 E-value=76 Score=34.37 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
..+..+...+..+...+-....+..+...+...+|+++..|+.+..=-+.-. . .. -|.+-.|..
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~--~-~~--------~~l~~~i~~----- 845 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLA--E-LI--------EYLESQIAE----- 845 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHH--H-HH--------HHHHHHHHH-----
Confidence 4556666667777777777777888888899999998887665443221100 0 00 001111110
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 192 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~ 192 (203)
+-+.|-=.-+-.+....+.++++.+++.++.+.+.-.. +++|..++-+|-++.+--|+..+.
T Consensus 846 --~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~ 907 (1293)
T KOG0996|consen 846 --LEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKD 907 (1293)
T ss_pred --HHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHH
Confidence 11111111133466677788888888888888766666 799999999999999998877654
No 49
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=47.90 E-value=73 Score=23.60 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 145 VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 145 ~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
......+..+++.++.++.++..+++++...+..++
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777777777777766554
No 50
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=47.83 E-value=62 Score=27.72 Aligned_cols=57 Identities=9% Similarity=0.304 Sum_probs=48.3
Q ss_pred CCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 028810 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (203)
Q Consensus 29 IP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdik 85 (203)
..-+.|..+|-+||.....+.+..+.....++.+|+|=...+..|+..+-.-++.+.
T Consensus 37 lsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~~~~~ 93 (186)
T PF12983_consen 37 LSMADFSKKIMEYMEENNISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDMSSLN 93 (186)
T ss_pred ccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccccc
Confidence 455789999999998876789999999999999999999999999998865554444
No 51
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=47.26 E-value=24 Score=26.57 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=29.7
Q ss_pred eeCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLE------NAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~------~a~~~l~~~~edL~fLrdQI 172 (203)
-||++++.++|...-. .+...+..+..+|.-||+|+
T Consensus 58 G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 58 GYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLRDQL 99 (99)
T ss_pred CCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 4699999999987544 48888899999999999875
No 52
>PF14282 FlxA: FlxA-like protein
Probab=47.09 E-value=97 Score=23.70 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIAD-----------LQFLRDQVTITQVTVARVYNWD 186 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~ed-----------L~fLrdQItt~EVn~ARvyN~d 186 (203)
+.+.-++-|.+++..+.+.+..+..+ ..-|..||..++.-|++++.=-
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888899999999999999888873 4568888888888888876543
No 53
>PRK02224 chromosome segregation protein; Provisional
Probab=46.62 E-value=1.3e+02 Score=30.36 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVT 178 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn 178 (203)
.++.+..=|...+..++.....+.+.|..+|++|..++.+
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~ 642 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777778888888888888777643
No 54
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=44.63 E-value=10 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=14.9
Q ss_pred ccceeeeEEeCCCCeEEEecccce
Q 028810 111 SEGIFSRARIEDTDSVCLWLGANV 134 (203)
Q Consensus 111 ~d~~y~kA~I~~tdkV~LwLGAnV 134 (203)
++++|. +....+|++|+|.+.
T Consensus 17 s~~~yI---ld~~~~i~vW~G~~~ 37 (76)
T PF00626_consen 17 SDDCYI---LDCGYEIFVWVGKKS 37 (76)
T ss_dssp TTSEEE---EEESSEEEEEEHTTS
T ss_pred CCCEEE---EEeCCCcEEEEeccC
Confidence 345553 445669999999994
No 55
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=43.60 E-value=1e+02 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
+..+.+.-.+.+..+..||+|+...|..+...++.=|
T Consensus 48 ~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~y 84 (88)
T PF10241_consen 48 ARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQY 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345566667788899999999999999888777654
No 56
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.39 E-value=88 Score=22.10 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 142 EATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~fLrdQ 171 (203)
+...-|+.+.+..+..++.+.++|..|.+.
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 57
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.80 E-value=86 Score=24.53 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.++..+++....-..+..+++..+.-+-++...=+=-...+ +-+.+|++...+.
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk--------------~VG~vlv~qd~~e---------- 71 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYK--------------IVGNLLVKVDKTK---------- 71 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH--------------HhhHHHhhccHHH----------
Confidence 4555666777777777777888887777766665321111111 1223455543322
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
+--.+++-+++++.+++.+++..+.+.+.+..++++|..+=
T Consensus 72 ---~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 ---VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12267899999999999999999999999999999987653
No 58
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=41.16 E-value=1.3e+02 Score=24.16 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Q 028810 143 ATVLLQKNLENAKASLEVLIADLQFLRDQ------------VTITQVTVARVYN 184 (203)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~fLrdQ------------Itt~EVn~ARvyN 184 (203)
|.+|=....+++.+++..+.-+|..||-+ |.++-.|+|||+-
T Consensus 6 ~~eLr~~~ke~L~~ql~dLK~ELa~LRv~K~tgg~~~klskik~vrKsiArvLT 59 (123)
T KOG3436|consen 6 ARELRGKSKEQLLKQLDDLKVELAQLRVAKVTGGAASKLSKIKVVRKSIARVLT 59 (123)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Confidence 44555566789999999999999999977 6678899999975
No 59
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.06 E-value=75 Score=26.70 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 028810 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (203)
Q Consensus 28 gIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~ 90 (203)
..|...=++||=.|+..-. +..+..+.++...++.+..-..|+++...|+..+..+.+-+.+
T Consensus 75 ~~~~~ltl~~vI~fLq~l~-~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 75 REAGSLTLQDVISFLQNLK-TTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred cCcccCCHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888886532 1111222333333333333334444444444444444444433
No 60
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.98 E-value=1e+02 Score=29.84 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
.++.+|..+++++..|+--=..+...+..|+.+=-++..-|+==+...++ + +-|+...+.||+=|.
T Consensus 25 ~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~------L--------~~~i~~i~ipP~lI~ 90 (508)
T PF04129_consen 25 ECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEK------L--------SPFIDDIVIPPDLIR 90 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------H--------HHHHHHHcCCHHHHH
Confidence 45666666666666666666666666666666655555554433333322 1 114555555666554
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAKA-------SLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 192 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~~-------~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~ 192 (203)
.-+..+|-= .-+.+..+++.+.+..... ..+.+...|+.||. +.++|+++|-+.+=+.
T Consensus 91 ~I~~~~v~e-~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~------ka~~rir~fl~~kI~~ 155 (508)
T PF04129_consen 91 SICEGPVNE-QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKN------KAVERIRDFLLKKIKS 155 (508)
T ss_pred hHhcCCCCH-HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 444444422 2244556777666554432 23444455555543 5678999999877443
No 61
>PRK00295 hypothetical protein; Provisional
Probab=38.40 E-value=1.4e+02 Score=21.11 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++++-+.=|+.++.-.+..++.+++-+..-+.+|..++.-+..+++
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777778877777777778877777777755
No 62
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=37.95 E-value=2.2e+02 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQA 195 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~~~~ 195 (203)
..+|++++..+-.+++.+..+...+.-.-..+...-+....|.-+||.++.+
T Consensus 202 ~~~le~~l~~l~~~id~l~~e~~~~~~y~r~~~~~~~~~~~~~~kr~~en~~ 253 (266)
T cd08065 202 NSFLEKNLELLMESVDELSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQ 253 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5568888888888888888888877666666777777888898666555433
No 63
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=37.69 E-value=1e+02 Score=22.84 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=17.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
||++++.+++...- ......+.+-+..|.+||..++.
T Consensus 58 ~~l~~i~~~~~~~~---~~~~~~l~~~~~~l~~~i~~l~~ 94 (103)
T cd01106 58 FSLKEIKELLKDPS---EDLLEALREQKELLEEKKERLDK 94 (103)
T ss_pred CCHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677666665442 22333334444444444444433
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.17 E-value=99 Score=21.29 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 148 QKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 148 ~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
...+..+++.++.+....+.|+.++..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 65
>PRK11637 AmiB activator; Provisional
Probab=37.15 E-value=2.3e+02 Score=26.41 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD 186 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~d 186 (203)
++..+.-+..++..++..+..++.+++.++.+|...+..+...+..-
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777888888888888888877777776655433
No 66
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=36.90 E-value=18 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=27.1
Q ss_pred CeEEEecccceeeeeCHHHHHHHHHHHHHHHHHH
Q 028810 124 DSVCLWLGANVMLEYSCDEATVLLQKNLENAKAS 157 (203)
Q Consensus 124 dkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~ 157 (203)
.++++++||||.+.-.+....+|++.=.+.+...
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~ 34 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLE 34 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCc
Confidence 4789999999999988888888887665555443
No 67
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=36.80 E-value=49 Score=29.48 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028810 154 AKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 154 a~~~l~~~~edL~fLrdQItt~ 175 (203)
|-+.+..++..|.+||.||..+
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999865
No 68
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.67 E-value=1.4e+02 Score=23.08 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
+.+...+|..++..++..+..+.+-++.|.+-+...+-
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777776665543
No 69
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.48 E-value=1.9e+02 Score=23.17 Aligned_cols=43 Identities=7% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
..|..+.+.+.+..+...+..+..|++.++.-+..+|-.|.++
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999998886
No 70
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.33 E-value=1.3e+02 Score=22.62 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=20.0
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
||++|...++...-. ..-..-+..-++.|.+||..++-...+
T Consensus 59 ~sl~~i~~l~~~~~~--~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (108)
T cd01107 59 FPLEEIKEILDADND--DELRKLLREKLAELEAEIEELQRILRL 100 (108)
T ss_pred CCHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666654432 333333444444444444444444433
No 71
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.04 E-value=2e+02 Score=21.68 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLR 169 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLr 169 (203)
++...+|..++..++..++.+..-++.|.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 72
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.81 E-value=2.4e+02 Score=22.62 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 148 QKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 148 ~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
.+....++.++....+.|+-|+..|..+|...++.|.+--.-
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777777777665443
No 73
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=34.67 E-value=27 Score=24.93 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.2
Q ss_pred CCCCeEEEeccccee
Q 028810 121 EDTDSVCLWLGANVM 135 (203)
Q Consensus 121 ~~tdkV~LwLGAnVm 135 (203)
...+.|++|+|.+..
T Consensus 32 d~~~~iyvW~G~~as 46 (90)
T smart00262 32 DTGSEIYVWVGKKSS 46 (90)
T ss_pred ECCCEEEEEECCCCC
Confidence 446799999999974
No 74
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.30 E-value=1.5e+02 Score=22.47 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.++..+++....-..+..++.....-+-++...=+--+..+ +-+++|++-.++..
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk--------------~VG~vlv~~~~~e~--------- 68 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYK--------------SVGNLLVKTDKEEA--------- 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH--------------HhchhhheecHHHH---------
Confidence 4455555666666666666777666655555544322112222 11225665444321
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
--.+++=+++|+..++.++++++.+...+..++.++..+
T Consensus 69 ----~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 ----IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125788888889999999999999999999998887653
No 75
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=34.24 E-value=63 Score=26.35 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 143 ATVLLQKNLENAKASLEVLIADLQFLR 169 (203)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~fLr 169 (203)
|...|+++|+.|+.+|+.+.+++-+|-
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKlt 30 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLT 30 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 677889999999999999998888774
No 76
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=65 Score=25.73 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74 (203)
Q Consensus 24 ~~~rgIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~ 74 (203)
.-|||||+..+ .++-|++.- ....++-+.|...-.+|-..-..+...+
T Consensus 26 lWPRGi~Ke~~--~~D~W~Kdi-APS~eLRkwf~Hdp~~w~~F~~rY~~EL 73 (117)
T COG3189 26 LWPRGIKKEDL--ALDLWLKDI-APSTELRKWFHHDPKKWDEFRERYRAEL 73 (117)
T ss_pred cCCCCCChhhh--hHHHHHhhc-CCCHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45999999999 677899763 3344555556555555555554444443
No 77
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.24 E-value=2.6e+02 Score=23.70 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
..|+.|.+.++..+.+....++..|+.|-+.-..=+....|+|.|.+.-
T Consensus 39 ~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 39 GGAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999998764
No 78
>PRK00846 hypothetical protein; Provisional
Probab=33.01 E-value=1.7e+02 Score=21.66 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 148 QKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 148 ~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
+.|+..++..+.-.+.-++.|.+.++.-..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~ 41 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARL 41 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 79
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.00 E-value=76 Score=27.42 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=35.3
Q ss_pred eeeeeCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAK-------ASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~-------~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
.+|-+.++.=.++-..++..++ .+++.+.+||+-|++|+..+|.-++
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666664 5789999999999999999997663
No 80
>PRK11637 AmiB activator; Provisional
Probab=32.53 E-value=4.2e+02 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
+...+.-++.++..+++.+..++.+|+..++++...=.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666555555555544333
No 81
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.40 E-value=1.8e+02 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
.+++-++.|...++.++++++.+...+.-++..|..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777777777666543
No 82
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=31.71 E-value=2.1e+02 Score=21.36 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V 91 (203)
+++++++.+......++.....+..++..+..++-.+...++-+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999988888877654
No 83
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.48 E-value=1.1e+02 Score=23.64 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 028810 164 DLQFLRDQVTITQ 176 (203)
Q Consensus 164 dL~fLrdQItt~E 176 (203)
.-+.||+.+...+
T Consensus 44 EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 44 ENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666665543
No 84
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.81 E-value=2.2e+02 Score=21.22 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=23.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 136 LEYSCDEATVLLQKNLENAKASLEVLIAD 164 (203)
Q Consensus 136 vEy~l~EA~~lL~~~l~~a~~~l~~~~ed 164 (203)
+.|++++|..=|...+..++..+..--+.
T Consensus 2 ~~~~le~al~rL~~aid~LE~~v~~r~~~ 30 (89)
T PF13747_consen 2 VTYSLEAALTRLEAAIDRLEKAVDRRLER 30 (89)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999998888877654443
No 85
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=30.53 E-value=1.7e+02 Score=22.03 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=37.9
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 028810 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (203)
Q Consensus 27 rgIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe 89 (203)
.+++.+..-..|..|..+. ++...+..| ..+.+.....+.+.....-.++|.....|.
T Consensus 14 ~~lt~~e~~~~l~~Wa~~~--~v~~~~~~f---~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~ 71 (113)
T PF02520_consen 14 PNLTKAEIEEQLDEWAEKY--GVQDQYNEF---KAQVQAQKEEVRKNVTAVISNLSSAFAKLS 71 (113)
T ss_pred CCCCHHHHHHHHHHHHHHC--CcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999876 344444443 344444555666677777777774444443
No 86
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=30.43 E-value=3.4e+02 Score=23.06 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEe
Q 028810 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW 129 (203)
Q Consensus 50 e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~Lw 129 (203)
.+-++.|++.+.+++-.+..+.+++......|--++..+.-+..|.+.+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk------------------------------- 115 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK------------------------------- 115 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------------------------
Confidence 3457889999999999999999988888887777777776666665422
Q ss_pred cccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028810 130 LGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIR 193 (203)
Q Consensus 130 LGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~~ 193 (203)
.++| .+-|..++..++..+..-...+.-|.-|+.-..-+..|-.+--.++-.+.
T Consensus 116 ---------nL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~ 169 (194)
T PF15619_consen 116 ---------NLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEA 169 (194)
T ss_pred ---------Cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455 45678899999999999999999999999988888888777766654443
No 87
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.86 E-value=1.7e+02 Score=22.01 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=25.2
Q ss_pred eeCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLE---NAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~---~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
-||++|...+|...-. .+.....-+.+-++.|.++|..++..++.+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 105 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYL 105 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888864211 123334445555555555555555544443
No 88
>PRK09039 hypothetical protein; Validated
Probab=29.80 E-value=4.4e+02 Score=24.18 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 028810 47 LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (203)
Q Consensus 47 ~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k 97 (203)
.+.+..|..++..+..--.+-.-=.++...|+..|.++...+++.+.....
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~ 99 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSR 99 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667766666644444444456667777777777777776666543
No 89
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.40 E-value=56 Score=31.97 Aligned_cols=34 Identities=35% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVT 178 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn 178 (203)
..+++ +|+.|++.++++++.++.+.+++..+|.-
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 34566 99999999999999999888888887763
No 90
>PRK00736 hypothetical protein; Provisional
Probab=29.26 E-value=2.1e+02 Score=20.25 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++++-+.=|+.++.-.+..++.+++-+..-..+|..++.-+..+++
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777777766666667666666666554
No 91
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.86 E-value=2.2e+02 Score=21.67 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVL--IADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~--~edL~fLrdQItt~EVn~AR 181 (203)
+++...-...|++.++..++.+ ..|+..|+-.|+.+.-.++.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555666777788887777777 77777777777766655443
No 92
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.67 E-value=2.6e+02 Score=22.90 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDV 187 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV 187 (203)
..-|++....+...++++.+++..++-...-...-..++||+.|
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567777778888888888888888888888888889999887
No 93
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=28.38 E-value=2.8e+02 Score=22.18 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=35.4
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 134 VmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
|-+--.++.|.+|.+..+--| +++..+-||+||+.++-..+++
T Consensus 44 vaIDNKIeQAMDLVKtHLmfA------VREEVe~Lk~qI~eL~er~~~L 86 (123)
T KOG4797|consen 44 VAIDNKIEQAMDLVKTHLMFA------VREEVEVLKEQIRELEERNSAL 86 (123)
T ss_pred EeechHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 667778999999999888655 6788999999999998776665
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.16 E-value=5.2e+02 Score=24.45 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 028810 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (203)
Q Consensus 60 ~~KYk~me~~l~qq~~~L~~kIpdikktLe~V 91 (203)
+..|..+...+..+...++.++..+..-++.+
T Consensus 162 ~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l 193 (562)
T PHA02562 162 ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHI 193 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776666666666666666665555543
No 95
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.64 E-value=3.2e+02 Score=21.77 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=30.8
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDV 187 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV 187 (203)
-||++|..++|...-. .......+.+.++-+..||..++..++.+.-+--
T Consensus 56 G~sL~eI~~~l~~~~~-~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~ 105 (134)
T cd04779 56 RLSLAEIKDQLEEVQR-SDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIAS 105 (134)
T ss_pred CCCHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888887764432 1223445666677777777777777776655543
No 96
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.50 E-value=1.5e+02 Score=21.54 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=19.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQI 172 (203)
+|++++..+|. +..+++.+...|..||+++
T Consensus 59 ~~l~~i~~~l~-----l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 59 VNLAGVKRILE-----LEEELAELRAELDELRARL 88 (91)
T ss_pred CCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 47777777775 5666666666666666554
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.48 E-value=2.2e+02 Score=19.99 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++-+.=|+.+++-.+..++.+++-+..-..+|..++.-+..++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666555555666666665555544
No 98
>PRK09039 hypothetical protein; Validated
Probab=27.39 E-value=2e+02 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
+..|+.+++.++.++..++..|+....+....++.++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655555555444
No 99
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.30 E-value=4.2e+02 Score=23.11 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
-++..|+..+..|.+-+..-..+..+...++.++-++..- ...++.+- .--+..|+.-+++
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~---~~k~e~~A------~~Al~~g~E~LAr---------- 88 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR---AEKLEEKA------ELALQAGNEDLAR---------- 88 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HHHHHCCCHHHHH----------
Confidence 3445566666667777777766666777777666655544 33343320 0001111111111
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
..-+.+.-|++.++..+..+....+.++.||.++..++..|+-
T Consensus 89 -----------~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 89 -----------EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455666677777777777777777777777777777664
No 100
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.29 E-value=1.4e+02 Score=24.05 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 142 EATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~fLrdQI 172 (203)
+.+.+|+..+...+..++...+.|..|++.+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~ 71 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNA 71 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=26.08 E-value=60 Score=33.49 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCCcccccccHHHHhccCC--c--CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 028810 28 GIPAAQFVEDVQTFLSQLD--L--DVNSALAFL-------------QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (203)
Q Consensus 28 gIP~A~FiedV~~~~~~~~--~--~~e~~l~~l-------------qe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~ 90 (203)
+-|...|||++..+++..+ + ++...|+-+ ..-|++|-.....+.++...+.-.-|+...++.+
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~i 349 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 349 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHH
Confidence 4678999999999995532 2 333333221 1224555556678888887788888999999999
Q ss_pred HHHHHhh
Q 028810 91 VATLQAK 97 (203)
Q Consensus 91 V~~L~~k 97 (203)
++.|..+
T Consensus 350 L~~l~~~ 356 (857)
T PRK10865 350 LRGLKER 356 (857)
T ss_pred HHHHhhh
Confidence 9998765
No 102
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=25.80 E-value=1.1e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 142 EATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
|++.++-.......+.+..++.+++.|++.++....
T Consensus 1 ~~i~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~ 36 (116)
T PF10552_consen 1 QQIKLLMQATEEHNEKIEEVENRVDDLEENMPIDPG 36 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 467788888888899999999999999887765443
No 103
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.73 E-value=2.1e+02 Score=23.27 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028810 163 ADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 163 edL~fLrdQItt~EVn~A 180 (203)
..|+-|+..+..+...|+
T Consensus 95 k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 95 KEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 104
>PRK00736 hypothetical protein; Provisional
Probab=25.72 E-value=2.5e+02 Score=19.89 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 148 QKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 148 ~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
+.++..++..+.-.+..++-|.+.|+.-..-|.++-
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444433
No 105
>PF15219 TEX12: Testis-expressed 12
Probab=25.35 E-value=1.9e+02 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktL 88 (203)
+..++..+..=.-.|..|.|++..|.+++.=|-.+|
T Consensus 63 i~eiD~lfkEA~~lEnfLkqkre~LrQrlt~isntL 98 (100)
T PF15219_consen 63 ITEIDGLFKEANALENFLKQKRECLRQRLTVISNTL 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777778888888888888777666665
No 106
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=25.33 E-value=3e+02 Score=28.76 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc----------CCCCeeEEEEcccceeeeE
Q 028810 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE----------GGEALTADFEVSEGIFSRA 118 (203)
Q Consensus 49 ~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~----------~~e~~et~f~L~d~~y~kA 118 (203)
||.+|+..|+....-++.| +++.+..+||+... +|.+.|.+|.. ...-+.-.=.||=|.|.++
T Consensus 573 VEnvlksyqqr~~Rk~QLE------kEM~kagLpd~~q~-qMrkmL~QKESnYiRLkRaKMdKSmFvkik~iGvGAFGeV 645 (1034)
T KOG0608|consen 573 VENVLKSYQQREKRKKQLE------KEMVKAGLPDIMQN-QMRKMLQQKESNYIRLKRAKMDKSMFVKIKTIGVGAFGEV 645 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhcCCHHHHH-HHHHHHHhhhhhHHHHHHhhccccceEEEeeeccccccee
Confidence 6666666655555444444 56778899998764 77787876511 1112444457888888776
Q ss_pred EeCC-CCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 119 RIED-TDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLI 162 (203)
Q Consensus 119 ~I~~-tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~ 162 (203)
++.. .|+= -+.--++|.-|--|+..+..-.+...+.+.
T Consensus 646 ~Lv~KvDT~------~lYAmKTLrKaDVl~rnQvaHVKAERDILA 684 (1034)
T KOG0608|consen 646 CLVRKVDTR------ALYAMKTLRKADVLMRNQVAHVKAERDILA 684 (1034)
T ss_pred EEEeecchh------hHHHHhhhHHHHHHhhhhhhhhhhhhhhHh
Confidence 6632 2221 122334566666666666655555544443
No 107
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.16 E-value=2.9e+02 Score=20.84 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=19.5
Q ss_pred eCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLE------NAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 138 y~l~EA~~lL~~~l~------~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
||++|...++..... .+....+.+.+-+..|.+||..++...+.
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~ 106 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPCPDLLAVLRRELARIDRQIADLTRSRDR 106 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666543221 12233344444444444444444444333
No 108
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.15 E-value=1.9e+02 Score=22.73 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~ 90 (203)
.|....+..+.+..+..+++..|+.+|.|+.+.|+-
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667788888899999999999999999999887
No 109
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.07 E-value=2.7e+02 Score=20.07 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
|.+-++.+.+.++.++++++-|..+++.+=.+..++=
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~ 60 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELL 60 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555677777777777888888777777766665543
No 110
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.83 E-value=2.4e+02 Score=20.36 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=33.4
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 028810 41 FLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (203)
Q Consensus 41 ~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe 89 (203)
|+.. +.+.++..|.........--..+..++..+..++-+++..|.
T Consensus 55 fv~~---~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 55 FVKQ---DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EEEE---EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 477777777777777777777777777777777777776653
No 111
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.53 E-value=1.8e+02 Score=20.30 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028810 160 VLIADLQFLRDQVTITQV 177 (203)
Q Consensus 160 ~~~edL~fLrdQItt~EV 177 (203)
.+..+|+...+-|..|++
T Consensus 29 ~~e~~l~ea~~~l~qMe~ 46 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMEL 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 112
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=24.16 E-value=49 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=19.7
Q ss_pred CCCCeEEEeccccee-eeeCHHHHHHHHHH
Q 028810 121 EDTDSVCLWLGANVM-LEYSCDEATVLLQK 149 (203)
Q Consensus 121 ~~tdkV~LwLGAnVm-vEy~l~EA~~lL~~ 149 (203)
|...+|||.||+|+= -+..+..|...|..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~ 34 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAA 34 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHh
Confidence 346789999999982 44556666665543
No 113
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.08 E-value=2.9e+02 Score=27.27 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=39.7
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNW 185 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~ 185 (203)
++.+|+..-....+..+.+.+..+.+++..|++++..++-...++=.|
T Consensus 82 ~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467777677777888888888888888888888888888888888777
No 114
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=4e+02 Score=21.80 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
++.=++-|.+.+..++..+..+..-+..|+.+++..
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 115
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.06 E-value=2.9e+02 Score=22.54 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIA---DLQFLRDQVTITQVTVA 180 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~e---dL~fLrdQItt~EVn~A 180 (203)
.+...-|+.++..+.+.++.+.. |.+-|+.+|..++-...
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888 88999999998886655
No 116
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.83 E-value=4.3e+02 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 194 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~~~ 194 (203)
.++-+.+.+++++..+...++++...|.++| |+|+.-+=|-+|-+.+-.+
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~------E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEER------EENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHH
Confidence 3566788899999999999999999999998 8888888898887654433
No 117
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.66 E-value=32 Score=26.29 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikk 86 (203)
.|+..|..+...|..|...-..|.++...|..++.+++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444445555555555555555555666666665555443
No 118
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.64 E-value=2.3e+02 Score=18.80 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVL 161 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~ 161 (203)
+.++...+|..+++.+.+.++.+
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L 55 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAEL 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444433
No 119
>PRK14127 cell division protein GpsB; Provisional
Probab=23.55 E-value=2e+02 Score=22.53 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred ccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 028810 36 EDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83 (203)
Q Consensus 36 edV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpd 83 (203)
+.|++|+ ..+-.-+..|.......+..-..+..++..++.+++.
T Consensus 26 ~EVD~FL----d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 26 DEVDKFL----DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 120
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.52 E-value=3.2e+02 Score=20.70 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
+.++...+|..+++.+++.++.+..-+.+|..-+..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777776666666554433
No 121
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.51 E-value=1.9e+02 Score=21.12 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 149 KNLENAKASLEVLIADLQFLRDQVTITQVT 178 (203)
Q Consensus 149 ~~l~~a~~~l~~~~edL~fLrdQItt~EVn 178 (203)
++|..+.+..++++++|..|.+||=..|-.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888889999999999999887764
No 122
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.41 E-value=3.6e+02 Score=23.81 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=29.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 136 LEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 136 vEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQ 171 (203)
.|..-.||..+|+.-+.++..+++.++.+++-|..+
T Consensus 116 ~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~ 151 (233)
T PF04065_consen 116 KEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQ 151 (233)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677899999999999999999999999876644
No 123
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.28 E-value=3e+02 Score=21.99 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCCCcccccccHHHHhc--------------c-CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 028810 27 RGIPAAQFVEDVQTFLS--------------Q-LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (203)
Q Consensus 27 rgIP~A~FiedV~~~~~--------------~-~~--~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktL 88 (203)
...|...|-+++..|.. . || .+.+..++++.++..+.+..+..+.+.+..-+.-+-.++.+|
T Consensus 60 ~~~~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 60 APDPPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777665554432 2 44 355666777777777777777666655555444444444443
No 124
>PRK05685 fliS flagellar protein FliS; Validated
Probab=23.26 E-value=2.7e+02 Score=21.95 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=34.4
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 028810 140 CDEATVLL--------QKNLENAKASLEVLIADLQFLRDQVT-----ITQVTVARVYNWDVHQ 189 (203)
Q Consensus 140 l~EA~~lL--------~~~l~~a~~~l~~~~edL~fLrdQIt-----t~EVn~ARvyN~dV~~ 189 (203)
+|.|+..| .+++...-..+.+...=+.-|+.-+. .+-.|+.++|.|-.++
T Consensus 32 ydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~ 94 (132)
T PRK05685 32 YEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRR 94 (132)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHH
Confidence 45555555 34456666666666666666666653 6778999999999876
No 125
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.23 E-value=3.4e+02 Score=20.56 Aligned_cols=10 Identities=40% Similarity=0.311 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 028810 139 SCDEATVLLQ 148 (203)
Q Consensus 139 ~l~EA~~lL~ 148 (203)
|++|...+|.
T Consensus 59 sl~eI~~~l~ 68 (123)
T cd04770 59 SLAEIRELLS 68 (123)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 126
>PHA03011 hypothetical protein; Provisional
Probab=22.78 E-value=2.4e+02 Score=22.32 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
-.++..+++.++.-+..-.+.+-|||.||..+--|+|-
T Consensus 80 Yn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 80 YNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 35677788888888888888899999999888888764
No 127
>PRK04325 hypothetical protein; Provisional
Probab=22.25 E-value=3.1e+02 Score=19.73 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++-+.=|+.+++-.+..++.+++-+..-+.+|..++.-+..+.+
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555556555555555533
No 128
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.05 E-value=2.2e+02 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQ 171 (203)
++++-.++|..+++.+...++.+++.|+.+-|.
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~ 114 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADD 114 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777777777777777777666655443
No 129
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=2.9e+02 Score=22.08 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 156 ASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 156 ~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
..-..+..-|+||...|+..|-++.-.-
T Consensus 69 EAr~nV~kRlefI~~Eikr~e~~i~d~q 96 (120)
T KOG3478|consen 69 EARTNVGKRLEFISKEIKRLENQIRDSQ 96 (120)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777777777777665443
No 130
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=21.32 E-value=2e+02 Score=23.44 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQIt 173 (203)
.+|..-.|-.+|+.+..+|..+...+..||+|-+
T Consensus 98 ~ed~L~~llaqLealsqqL~~ls~qv~~L~~~~~ 131 (135)
T PHA03385 98 AEDKLLVLLAQLEALSQQLQELSQQVAQLREQTQ 131 (135)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3788888889999999999999999999998864
No 131
>PRK00295 hypothetical protein; Provisional
Probab=21.10 E-value=3.1e+02 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 150 NLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 150 ~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
++..++..+.-.+..++-|.+.++.-.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 132
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=21.10 E-value=2.2e+02 Score=21.20 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=6.8
Q ss_pred eCHHHHHHHHHH
Q 028810 138 YSCDEATVLLQK 149 (203)
Q Consensus 138 y~l~EA~~lL~~ 149 (203)
+|++|+..++..
T Consensus 58 ~~l~ei~~~~~~ 69 (102)
T cd04775 58 LPLEEIAGCLAQ 69 (102)
T ss_pred CCHHHHHHHHcC
Confidence 366666665543
No 133
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=21.08 E-value=71 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 028810 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (203)
Q Consensus 56 lqe~~~KYk~me~~l~qq~~~L~~kIpdikktL 88 (203)
....--+|++|-+.|..+-..|..+|-++-+.+
T Consensus 202 ~d~~k~~yr~M~~kL~e~sevLDdrId~f~~~i 234 (253)
T PF08418_consen 202 FDPKKYKYRYMFQKLSERSEVLDDRIDEFAELI 234 (253)
T ss_dssp ----------S---HHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446999999999999999999999998875
No 134
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.74 E-value=3.3e+02 Score=19.48 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
+++-+.=|+.++.-.+..++.+++-+..-+.+|..++.-+..+++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666677777777777777777777777776655
No 135
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.72 E-value=2.4e+02 Score=22.12 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 147 LQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
|-+++..++.++..+-.++.-|+.+++.+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777654
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.46 E-value=5.6e+02 Score=24.74 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD 186 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~d 186 (203)
.++..++=|+..+..++..+.....|+..++.+|..++-++..+=.=-
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888765544
No 137
>PRK02119 hypothetical protein; Provisional
Probab=20.44 E-value=3.4e+02 Score=19.51 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
++-+.=|+.++.-.+..++.+++-+..-+.+|..++.-+.++++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666666666666666666666544
No 138
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=20.38 E-value=7.5e+02 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=24.7
Q ss_pred ccceeeeeCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSC---DEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 131 GAnVmvEy~l---~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQ 171 (203)
|+.|-+...+ ++|..+++...+.+++... .++++-+|++
T Consensus 377 ~~~~~~~~~~~~~~~~~~y~e~~~~~lek~~~--~~~ieei~ee 418 (564)
T COG1293 377 GAKVNLDRQLSELKEAIAYYESAKTALEKAEG--KKAIEEIREE 418 (564)
T ss_pred CceeehhhhhhhhHHHHHHHHHHHHHHHhccc--hhhHHHHHHH
Confidence 3666666554 4666777766666666555 5777777744
No 139
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=1.8e+02 Score=21.47 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=29.9
Q ss_pred eeEEEEcccceeeeEEeCCCCeE-EEecccc--eeeeeC
Q 028810 104 LTADFEVSEGIFSRARIEDTDSV-CLWLGAN--VMLEYS 139 (203)
Q Consensus 104 ~et~f~L~d~~y~kA~I~~tdkV-~LwLGAn--VmvEy~ 139 (203)
-...|.+.+|....|.|+-.-+. .+|+-.| |.||.+
T Consensus 20 ~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 20 GRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELS 58 (75)
T ss_pred CEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEec
Confidence 45678899999999999998888 9999887 666643
No 140
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.30 E-value=98 Score=17.95 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.8
Q ss_pred HHHHHhchhhHHHHHHHH
Q 028810 74 QRDLQAKIPDIEKCLDIV 91 (203)
Q Consensus 74 ~~~L~~kIpdikktLe~V 91 (203)
+.+++.+|-|+++-|+.+
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888887765
No 141
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.19 E-value=3.3e+02 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIAD 164 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~ed 164 (203)
.++...+|..+++.++..+..+..-
T Consensus 79 ~~~~~~~l~~~~~~l~~~i~~L~~~ 103 (131)
T TIGR02043 79 CAEVKAIVDAKLELVDEKINELTKI 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443333
No 142
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.10 E-value=4.2e+02 Score=24.62 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCCcccccccHHHHhccCC------cCHHHHHHHHHHHHHHHHHHHHHH
Q 028810 27 RGIPAAQFVEDVQTFLSQLD------LDVNSALAFLQERLQQYKLVEMKL 70 (203)
Q Consensus 27 rgIP~A~FiedV~~~~~~~~------~~~e~~l~~lqe~~~KYk~me~~l 70 (203)
+|=|.-|-.+|++..+.... ...++-+......+.|||+|....
T Consensus 209 nadkrhpr~~DiDgll~ENkfLhaklkiadeElEliK~siaKYKqM~dAk 258 (389)
T KOG4687|consen 209 NADKRHPRAEDIDGLLAENKFLHAKLKIADEELELIKMSIAKYKQMADAK 258 (389)
T ss_pred cCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788887664432 366777888899999999998765
No 143
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.10 E-value=8.6e+02 Score=27.24 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
+.+.....+.+....-+...+.|.+++..|..+-|.-.++-+.|+.|.+.- .+...++
T Consensus 569 ~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~------------------g~~~~~~---- 626 (1486)
T PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS------------------GEEFEDS---- 626 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhc------------------chhhcCH----
Confidence 666677788888899999999999999999999999999999999998752 1111111
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt 174 (203)
. .+.+++.-+-.+..++.....++...+..|.+||..
T Consensus 627 ----~------~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 663 (1486)
T PRK04863 627 ----Q------DVTEYMQQLLERERELTVERDELAARKQALDEEIER 663 (1486)
T ss_pred ----H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 345677777778888888888888888888888873
No 144
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.10 E-value=2.8e+02 Score=20.93 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.3
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQI 172 (203)
+.+.++..++|..++..++..+..+..-.+.|.+.+
T Consensus 76 ~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 76 FRPCPDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999999999988888877644
No 145
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=20.04 E-value=3.9e+02 Score=20.82 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 028810 140 CDEATVLLQ--------KNLENAKASLEVLIADLQFLRDQV-----TITQVTVARVYNWDVHQ 189 (203)
Q Consensus 140 l~EA~~lL~--------~~l~~a~~~l~~~~edL~fLrdQI-----tt~EVn~ARvyN~dV~~ 189 (203)
+|.|+..|. +++...-..+.+...=+.-|+.-+ ..+-.|+.++|.|-.++
T Consensus 28 ydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~ 90 (124)
T TIGR00208 28 YNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRR 90 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Confidence 455555555 345555555566566666666655 36778999999999876
Done!