Query 028810
Match_columns 203
No_of_seqs 132 out of 249
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 3.9E-30 1.3E-34 202.2 18.5 127 53-183 3-129 (133)
2 2zdi_C Prefoldin subunit alpha 100.0 3.7E-29 1.3E-33 201.3 14.3 130 50-184 8-140 (151)
3 2zqm_A Prefoldin beta subunit 98.7 5.6E-07 1.9E-11 68.0 14.4 106 51-183 6-111 (117)
4 1fxk_A Prefoldin; archaeal pro 98.5 5.3E-06 1.8E-10 61.7 15.0 102 53-181 3-104 (107)
5 3ci9_A Heat shock factor-bindi 72.5 3.8 0.00013 26.8 3.4 34 55-88 14-47 (48)
6 1fxk_C Protein (prefoldin); ar 69.1 20 0.00068 26.8 7.4 109 51-176 8-129 (133)
7 1deq_A Fibrinogen (alpha chain 61.7 95 0.0033 28.3 12.6 122 28-179 17-157 (390)
8 2zdi_C Prefoldin subunit alpha 60.0 14 0.00049 28.4 5.2 20 123-142 59-78 (151)
9 3htk_A Structural maintenance 57.8 35 0.0012 22.0 6.3 36 144-179 21-56 (60)
10 3viq_B Mating-type switching p 56.9 44 0.0015 24.2 6.9 43 145-187 4-52 (85)
11 3mq9_A Bone marrow stromal ant 56.9 1E+02 0.0035 27.1 12.7 58 35-93 358-425 (471)
12 3u06_A Protein claret segregat 55.9 30 0.001 31.3 7.3 51 139-189 7-57 (412)
13 3trt_A Vimentin; cytoskeleton, 55.1 32 0.0011 23.4 5.8 47 136-182 22-68 (77)
14 2v4h_A NF-kappa-B essential mo 55.0 66 0.0023 24.3 7.9 53 144-196 26-87 (110)
15 3ghg_A Fibrinogen alpha chain; 52.5 1.2E+02 0.0042 28.8 10.9 104 55-180 50-155 (562)
16 1l8d_A DNA double-strand break 52.2 62 0.0021 23.2 12.0 101 53-183 5-105 (112)
17 4dnd_A Syntaxin-10, SYN10; str 49.9 35 0.0012 26.1 5.8 45 48-92 35-94 (130)
18 1gd2_E Transcription factor PA 47.4 47 0.0016 23.0 5.6 37 144-180 31-67 (70)
19 3gp4_A Transcriptional regulat 46.6 62 0.0021 24.6 6.8 40 139-178 78-117 (142)
20 3gp4_A Transcriptional regulat 46.5 93 0.0032 23.6 9.4 52 138-189 60-121 (142)
21 4dnd_A Syntaxin-10, SYN10; str 46.3 36 0.0012 26.1 5.4 42 150-192 68-112 (130)
22 3swf_A CGMP-gated cation chann 45.0 31 0.001 24.5 4.3 48 36-83 3-50 (74)
23 4etp_A Kinesin-like protein KA 44.9 64 0.0022 28.9 7.6 50 140-189 8-57 (403)
24 3swy_A Cyclic nucleotide-gated 43.6 28 0.00097 22.4 3.7 44 37-80 2-45 (46)
25 3gpv_A Transcriptional regulat 41.8 97 0.0033 23.6 7.3 11 138-148 74-84 (148)
26 1fxk_A Prefoldin; archaeal pro 41.5 63 0.0021 22.8 5.8 35 139-173 69-103 (107)
27 2zqm_A Prefoldin beta subunit 40.8 73 0.0025 22.8 6.1 101 48-175 7-110 (117)
28 1gk4_A Vimentin; intermediate 39.2 59 0.002 22.8 5.2 46 132-177 9-54 (84)
29 2yo3_A General control protein 37.9 94 0.0032 26.9 7.2 38 146-183 220-257 (268)
30 2q6q_A Spindle POLE BODY compo 37.8 72 0.0025 22.4 5.2 37 51-87 24-60 (74)
31 3gpv_A Transcriptional regulat 37.6 58 0.002 24.9 5.4 39 139-177 92-130 (148)
32 3hh0_A Transcriptional regulat 37.3 1.3E+02 0.0045 22.8 7.4 29 69-97 84-112 (146)
33 3he5_B Synzip2; heterodimeric 35.9 86 0.003 20.1 6.8 40 145-184 6-45 (52)
34 3k29_A Putative uncharacterize 35.3 1.5E+02 0.005 24.0 7.5 50 135-184 2-51 (169)
35 1x8y_A Lamin A/C; structural p 34.9 1.1E+02 0.0037 21.6 6.1 44 133-176 12-55 (86)
36 2xz3_A Maltose ABC transporter 34.5 1.9E+02 0.0064 25.4 8.9 57 138-194 356-417 (463)
37 2c5k_T Syntaxin TLG1, T-snare 32.6 43 0.0015 24.3 3.7 38 151-192 38-75 (95)
38 2yny_A General control protein 32.4 91 0.0031 23.4 5.5 37 139-182 66-102 (106)
39 1q08_A Zn(II)-responsive regul 32.3 1.2E+02 0.0042 20.8 6.7 33 65-97 39-71 (99)
40 3mov_A Lamin-B1; LMNB1, B-type 32.1 1.2E+02 0.0042 21.9 6.1 45 131-175 19-63 (95)
41 3vmx_A Voltage-gated hydrogen 32.0 1.1E+02 0.0036 19.9 5.8 41 57-97 3-43 (48)
42 1swy_A Lysozyme; RB+ binding s 31.4 1.8E+02 0.006 22.3 8.2 51 137-189 57-110 (164)
43 2qyw_A Vesicle transport throu 31.4 62 0.0021 23.5 4.4 35 136-170 54-99 (102)
44 2nrj_A HBL B protein; enteroto 31.2 1.7E+02 0.0059 25.5 8.0 31 52-82 124-154 (346)
45 3iyn_Q Protein IX, PIX, hexon- 29.8 78 0.0027 24.7 4.8 36 137-172 93-128 (140)
46 3jsv_C NF-kappa-B essential mo 28.6 1.7E+02 0.006 21.4 9.3 54 145-198 5-67 (94)
47 1vcs_A Vesicle transport throu 28.6 64 0.0022 23.4 4.0 38 136-173 43-91 (102)
48 1q08_A Zn(II)-responsive regul 28.4 1.4E+02 0.0049 20.4 5.9 34 139-172 36-69 (99)
49 1ykh_B RNA polymerase II holoe 28.0 1.5E+02 0.005 22.6 6.2 52 37-88 72-126 (132)
50 3tnu_A Keratin, type I cytoske 27.7 1E+02 0.0035 23.1 5.2 44 133-176 61-104 (131)
51 3tnu_B Keratin, type II cytosk 27.7 1E+02 0.0035 23.0 5.2 43 133-175 59-101 (129)
52 3l4q_C Phosphatidylinositol 3- 27.6 2.4E+02 0.0081 22.6 12.5 120 47-182 10-136 (170)
53 1m1j_C Fibrinogen gamma chain; 27.0 2.2E+02 0.0074 25.8 8.1 7 57-63 26-32 (409)
54 2yy0_A C-MYC-binding protein; 26.5 1.1E+02 0.0037 19.9 4.4 36 36-71 5-43 (53)
55 1r8d_A Transcription activator 26.2 1.7E+02 0.006 20.6 6.2 39 138-176 60-102 (109)
56 1yke_B RNA polymerase II holoe 25.9 1.6E+02 0.0055 23.0 6.2 51 37-87 72-125 (151)
57 1r8e_A Multidrug-efflux transp 25.4 1.9E+02 0.0067 23.2 6.9 10 138-147 64-73 (278)
58 1e52_A Excinuclease ABC subuni 24.6 88 0.003 21.1 3.8 32 147-178 22-58 (63)
59 3c9i_A Tail needle protein GP2 24.6 2.4E+02 0.0081 23.8 7.2 43 141-183 104-146 (242)
60 1vh6_A Flagellar protein FLIS; 24.5 1.7E+02 0.0058 22.5 6.0 17 173-189 74-90 (145)
61 2vz4_A Tipal, HTH-type transcr 24.2 1.2E+02 0.0042 21.5 4.9 11 138-148 59-69 (108)
62 3qao_A LMO0526 protein, MERR-l 24.2 1.9E+02 0.0064 24.0 6.7 42 139-180 62-107 (249)
63 2qb0_B Telsam domain - lysozym 23.9 1.1E+02 0.0039 25.2 5.3 50 137-188 136-188 (241)
64 2p90_A Hypothetical protein CG 23.4 1.5E+02 0.0052 25.6 6.2 68 26-97 189-265 (319)
65 1p68_A De novo designed protei 23.3 38 0.0013 24.5 1.8 25 34-58 40-66 (102)
66 3sn6_R Lysozyme, beta-2 adrene 22.7 2.3E+02 0.0079 24.6 7.3 50 138-189 72-124 (514)
67 1lrz_A FEMA, factor essential 22.6 3.8E+02 0.013 23.4 8.8 76 48-133 244-332 (426)
68 3efg_A Protein SLYX homolog; x 22.0 2E+02 0.007 19.9 7.0 48 137-184 9-56 (78)
69 3hh0_A Transcriptional regulat 21.7 1.8E+02 0.0061 22.0 5.6 35 139-173 77-111 (146)
70 1q06_A Transcriptional regulat 21.7 2.1E+02 0.0071 21.2 5.9 32 140-171 77-108 (135)
71 2xz3_A Maltose ABC transporter 21.3 3E+02 0.01 24.0 7.8 55 38-93 348-407 (463)
72 1q06_A Transcriptional regulat 21.2 2.5E+02 0.0087 20.7 6.8 13 137-149 57-69 (135)
73 3ljm_A Coil Ser L9C; de novo d 21.2 1.1E+02 0.0038 17.7 3.2 23 70-92 6-28 (31)
74 3mq7_A Bone marrow stromal ant 21.1 2E+02 0.0068 22.0 5.6 98 48-180 12-109 (121)
75 3hsq_A Acyl-[acyl-carrier-prot 20.9 55 0.0019 26.7 2.6 68 27-96 183-250 (259)
76 3qbc_A 2-amino-4-hydroxy-6-hyd 20.6 34 0.0011 27.3 1.2 26 124-149 5-31 (161)
77 3q0x_A Centriole protein; cent 20.5 3.4E+02 0.011 22.7 7.4 45 138-182 160-204 (228)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.97 E-value=3.9e-30 Score=202.21 Aligned_cols=127 Identities=18% Similarity=0.262 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.|++++++|+++..++.+++..|..+||++++++++|+.|.. .++.+++||||+++|++|+|+++++||||||+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 67899999999999999999999999999999999999999975 35799999999999999999999999999999
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
|||||||++||+++|++|++.++.+++.+.+++.++++||++++-.+..++
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.7e-29 Score=201.29 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeE
Q 028810 50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV 126 (203)
Q Consensus 50 e~~l~~lqe~~~KYk~me~~l~qq~~~L---~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV 126 (203)
++-++.|.+.+++|+++...+.+++..| ..++||+++++++|+.|.. ++.+++||||+++|++|+|+++++|
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V 82 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA 82 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence 4568999999999999999999999999 9999999999999998852 6799999999999999999999999
Q ss_pred EEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 127 CLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 127 ~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
|||||+|||||||++||+++|++|++.++.+++.+.+++.+++++|+++++++..++.
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999873
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=98.71 E-value=5.6e-07 Score=67.98 Aligned_cols=106 Identities=16% Similarity=0.277 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEec
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwL 130 (203)
+-++.+...|+.|+..-..+.+++..+...+-+++.+++.|..|. ++- +||.-+
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~------~d~--------------------~vy~~i 59 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP------DDA--------------------VVYKTV 59 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------TTC--------------------CEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCc--------------------HhHHHh
Confidence 346677778888888888999999999999999999988887773 223 355555
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
| +|+|+.+.++|...|.++++.++..++.+...+.+++.++..++.++...+
T Consensus 60 G-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 60 G-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp T-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999987765
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=98.53 E-value=5.3e-06 Score=61.68 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
++.+...|++++..-..+.+++..++..+-+++.+++-|..|. ++-.+++.+ |
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~------~d~~vy~~i--------------------G- 55 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA------DDAEVYKSS--------------------G- 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCCEEEEE--------------------T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCchHHHHH--------------------h-
Confidence 4455566677777777888899999999999999988887772 223344444 4
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVAR 181 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~AR 181 (203)
+|+|+.|.++|...|.++++.++..++.+...+.+++.++..++.++..
T Consensus 56 ~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988754
No 5
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=72.53 E-value=3.8 Score=26.82 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktL 88 (203)
.|+.+-.||+.|...+..++..+-.+|-++++++
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4566667889999999999999999999999876
No 6
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=69.09 E-value=20 Score=26.80 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh-------------cCCCCeeEEEEcccceeee
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK-------------EGGEALTADFEVSEGIFSR 117 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~-------------~~~e~~et~f~L~d~~y~k 117 (203)
..++.++...+.....-..+...+..+..-+- +|+.+..-.... .-.++-+..+.||.|+|++
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e----~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE 83 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATISELEILEK----TLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence 34555555555555555555555554444333 333333111211 0112345888899999988
Q ss_pred EEeCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 118 ARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 118 A~I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
-.++.... -+++=++.|+.+++.+++.+..+...+.-+.++|..+.
T Consensus 84 ~~~~eA~~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 84 KNFEDAME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88764322 35666778888888888888888888888888876654
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.75 E-value=95 Score=28.26 Aligned_cols=122 Identities=9% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCcccccccHHHHhccCC--cCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH--------H
Q 028810 28 GIPAAQFVEDVQTFLSQLD--LDVNSALAF-------LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD--------I 90 (203)
Q Consensus 28 gIP~A~FiedV~~~~~~~~--~~~e~~l~~-------lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe--------~ 90 (203)
||-....||...+-|++++ .-+++=+.. ||..+.+.- ..+..++..|...+-++.++-. +
T Consensus 17 ~~RGpR~vE~~~s~Ck~~d~~~C~DeDwG~kCPsGCrLqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~ 93 (390)
T 1deq_A 17 GVRGPRLVERQQSACKETGWPFCSDEDWNTKCPSGCRMKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKDSNTLTKNI 93 (390)
T ss_pred CCCCCchhhhhccccCCCCCCCCchhhccCCCCccchHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444445677777777665 233444544 666665543 6666777777777666654432 2
Q ss_pred HHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccceeeee--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 91 VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY--SCDEATVLLQKNLENAKASLEVLIADLQFL 168 (203)
Q Consensus 91 V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnVmvEy--~l~EA~~lL~~~l~~a~~~l~~~~edL~fL 168 (203)
.+.|+++.. ...=+|+ |.=|| .|+.=+.+|+.++..--.++..|+.+|+.+
T Consensus 94 ~~~lk~~~~-------q~~dndn--------------------~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q 146 (390)
T 1deq_A 94 VELMRGDFA-------KANNNDN--------------------TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQ 146 (390)
T ss_pred HHHHHHHHH-------hhccchH--------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233332211 1111122 22233 577888899999888888999999999999
Q ss_pred HHHHHHHHHHH
Q 028810 169 RDQVTITQVTV 179 (203)
Q Consensus 169 rdQItt~EVn~ 179 (203)
+-.|..+||-|
T Consensus 147 ~~kiqRLE~~I 157 (390)
T 1deq_A 147 LVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 8
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=60.01 E-value=14 Score=28.44 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=11.8
Q ss_pred CCeEEEecccceeeeeCHHH
Q 028810 123 TDSVCLWLGANVMLEYSCDE 142 (203)
Q Consensus 123 tdkV~LwLGAnVmvEy~l~E 142 (203)
...|++-||+++++.=.+.+
T Consensus 59 ~~~ilvplg~~~yv~g~i~~ 78 (151)
T 2zdi_C 59 KPEILVPIGAGSFLKGVIVD 78 (151)
T ss_dssp SCEEEEECSSSCEEEEECSC
T ss_pred CceEEEEcCCCeEEEEEECC
Confidence 44566666666666555554
No 9
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.78 E-value=35 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTV 179 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ 179 (203)
...+...+..+..++..+.++|.-+|+.|+...-.+
T Consensus 21 ~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 21 CSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888888888888888887775544
No 10
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=56.94 E-value=44 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 028810 145 VLLQKNLENAKASLEVLIADLQFLRDQ------VTITQVTVARVYNWDV 187 (203)
Q Consensus 145 ~lL~~~l~~a~~~l~~~~edL~fLrdQ------Itt~EVn~ARvyN~dV 187 (203)
+-|+.+++.++.....+...+..++.+ -.+++.+|..+|-|+=
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 457888999999999999999998875 4678999999999963
No 11
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.93 E-value=1e+02 Score=27.14 Aligned_cols=58 Identities=21% Similarity=0.089 Sum_probs=34.4
Q ss_pred cccHHHHhccCCcCHHHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHhchhhHHHHHHHHHH
Q 028810 35 VEDVQTFLSQLDLDVNSALAFLQER----LQQYKLVEM------KLLAQQRDLQAKIPDIEKCLDIVAT 93 (203)
Q Consensus 35 iedV~~~~~~~~~~~e~~l~~lqe~----~~KYk~me~------~l~qq~~~L~~kIpdikktLe~V~~ 93 (203)
-+-+..++... .+++++++.++.. +.+++...+ .|++++.+++..+|++++--.++++
T Consensus 358 ~~~~~~vl~G~-~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 358 RTAVINAASGR-QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 33445555433 5788888776665 445544422 4677777777777777665554443
No 12
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.86 E-value=30 Score=31.32 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
++++...-|.++++.++...+.+...+..+++|+...+.--.++||--..-
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888899999999999999999999999999999998889999977654
No 13
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.13 E-value=32 Score=23.44 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=36.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 136 LEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 136 vEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
+..+-.||......+++.+........++|.-.|..|+.+-.++.++
T Consensus 22 a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 22 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999888888888887777777766666553
No 14
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.02 E-value=66 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA---------RVYNWDVHQRRIRQAA 196 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A---------RvyN~dV~~r~~~~~~ 196 (203)
+.-|..|+..|++.+.....+++.|+..|...+-.+. .||-=|...=|..+..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREk 87 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREK 87 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHH
Confidence 4458888888888888888888888887776655443 5787777765555543
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.53 E-value=1.2e+02 Score=28.78 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEecccce
Q 028810 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV 134 (203)
Q Consensus 55 ~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGAnV 134 (203)
+||.++.| +|..+..+++.|+.++-++.++=.-+...-...- +.+.-.+ ..+. . =-|+
T Consensus 50 rLQglLdk---qErDltkrINELKnqLEdlsKnsKdseqy~k~~~--E~Lr~rq-------~q~~---------d-NdNt 107 (562)
T 3ghg_A 50 RMKGLIDE---VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM--EILRGDF-------SSAN---------N-RDNT 107 (562)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--HTTSSHH-------HHHH---------H-HHHH
T ss_pred chhhhHHh---hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHH--HHHHHHH-------Hhhh---------c-cchh
Confidence 34444444 4667777777777777777665444433321100 0000000 0000 0 0346
Q ss_pred eeeeC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 135 MLEYS--CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 135 mvEy~--l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
+=||+ |..=+.+|+.++.+--.++..|+..|+-++-.|..+||-|.
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777 88889999999999889999999999999999999999874
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.18 E-value=62 Score=23.17 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEEEeccc
Q 028810 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (203)
Q Consensus 53 l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~LwLGA 132 (203)
+..+...+..|+-.-..|.+.+..+..+|-++++.+..+.. + ..+|=--|+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~---------~--------------------g~~CPvCgs 55 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK---------A--------------------KGKCPVCGR 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------C--------------------SEECTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C--------------------CCCCCCCCC
Confidence 33444455556555566777777788888888777754411 0 112222243
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
.+-=++ ..+.+.-....+..+...+..+.+.+..++..+..++..+++++
T Consensus 56 ~l~~~~-~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 56 ELTDEH-REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp EECHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332111 12344455566666666666666666666666666666655443
No 17
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=49.93 E-value=35 Score=26.14 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhchhhHHHHHHHHH
Q 028810 48 DVNSALAFLQERLQQYKLV---------------EMKLLAQQRDLQAKIPDIEKCLDIVA 92 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~m---------------e~~l~qq~~~L~~kIpdikktLe~V~ 92 (203)
+++..+..++..|+.|..+ -..|..-+..++..+-|+.+++.+|+
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999998633 22467778888888999999988876
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.37 E-value=47 Score=22.97 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
+.-|+.++..++.....+..+..+||++|..+..-+.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888889999999999998876554
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.57 E-value=62 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVT 178 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn 178 (203)
++++...+|..++..++..+..+..-++.|...|...+-.
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777666655543
No 20
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.55 E-value=93 Score=23.56 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=34.6
Q ss_pred eCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 138 YSCDEATVLLQK----------NLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 138 y~l~EA~~lL~~----------~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
+|++|...+|.. ....+...++.+.+.+..|+.....++--++..-.+..++
T Consensus 60 ~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 60 LSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999988863 3455666666777777777776666666666655554433
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.32 E-value=36 Score=26.09 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHH
Q 028810 150 NLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWD---VHQRRI 192 (203)
Q Consensus 150 ~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~d---V~~r~~ 192 (203)
--.++...+..+++||+-|.+=|..+|.|-+|. +-+ +.+||.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~ 112 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKV 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHH
Confidence 345677788888999999999999999887773 343 555554
No 22
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=44.99 E-value=31 Score=24.45 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=31.9
Q ss_pred ccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 028810 36 EDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83 (203)
Q Consensus 36 edV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpd 83 (203)
+|+++-|..-+++++..=.+|.-++..|......|.|++..|+.++-.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555544224555555577777888888888888888888876654
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.93 E-value=64 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
+++-++-|++....++..++.++..+..+++++..-|.--.++||=-...
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46677888899999999999999999999999999998888999876544
No 24
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=43.62 E-value=28 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=28.4
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028810 37 DVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAK 80 (203)
Q Consensus 37 dV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~k 80 (203)
|+++-+..-+++++..=.+|.-++..|......|.|++..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444433223455444567777788888888888888887764
No 25
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.83 E-value=97 Score=23.55 Aligned_cols=11 Identities=0% Similarity=0.145 Sum_probs=7.2
Q ss_pred eCHHHHHHHHH
Q 028810 138 YSCDEATVLLQ 148 (203)
Q Consensus 138 y~l~EA~~lL~ 148 (203)
||++|...+|.
T Consensus 74 ~sL~eIk~~l~ 84 (148)
T 3gpv_A 74 MPIQKIKQFID 84 (148)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 46677666665
No 26
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.51 E-value=63 Score=22.79 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQIt 173 (203)
.+++-.+.|...++.+++.++.+...+..++.++.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777654
No 27
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.83 E-value=73 Score=22.76 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCC
Q 028810 48 DVNSALAFLQERLQQYKLVEMKL---LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l---~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td 124 (203)
..+..+..|+.+.++++.....+ ..++..+..-+ ..|+.+.-=..- + +.|| ++|++-.++.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~----~eL~~l~~d~~v------y---~~iG-~vfv~~~~~e-- 70 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKAL----DEIESLPDDAVV------Y---KTVG-TLIVKTTKDK-- 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSCTTCCE------E---EEET-TEEEEECHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCcHh------H---HHhh-HHHhhccHHH--
Confidence 34555666666655555555544 44444444433 444443310100 1 3344 5666655432
Q ss_pred eEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 125 kV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
+.-.+++-++.|...++.+++.+..+...+..++.++..+
T Consensus 71 -----------a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 71 -----------AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2236889999999999999999999999999999988653
No 28
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.21 E-value=59 Score=22.79 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 132 AnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
-+..+|-.+.|+..-....+..+...+..++..|..+|..|...-.
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~ 54 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLR 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888887765433
No 29
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=37.86 E-value=94 Score=26.90 Aligned_cols=38 Identities=5% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 146 LLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 146 lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
-|..++....+.+.+++.+++.|-.-|.-+|.|++|+-
T Consensus 220 ~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 220 EMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666667777777777777763
No 30
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.76 E-value=72 Score=22.37 Aligned_cols=37 Identities=35% Similarity=0.431 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 028810 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (203)
Q Consensus 51 ~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikkt 87 (203)
-++..|+..+-||--|-..|..+...++.++.++.+-
T Consensus 24 vlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 24 KIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3577889999999999999999999999999887764
No 31
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.64 E-value=58 Score=24.87 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EV 177 (203)
++++...+|..++..+++.+..+..-++.|...|...+.
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999988888888888888887766554
No 32
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=37.33 E-value=1.3e+02 Score=22.78 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 028810 69 KLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (203)
Q Consensus 69 ~l~qq~~~L~~kIpdikktLe~V~~L~~k 97 (203)
.|..++..|..+|-+++..++.|+.+...
T Consensus 84 ~L~~q~~~L~~~i~~l~~~l~~l~~~i~~ 112 (146)
T 3hh0_A 84 QMHFQREVLLAEQERIAKVLSHMDEMTKK 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777666543
No 33
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.87 E-value=86 Score=20.11 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 145 VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 145 ~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
.+|.+++..+++---+++.|-+-|..-|..+--.+||+-|
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4677777777776666666655555555555556666655
No 34
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=35.29 E-value=1.5e+02 Score=24.03 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=24.7
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 135 mvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
|..||++--..+=.+++..|++.++.-..-|+.=++-....|--..++.|
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~ 51 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKN 51 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788765555555555555555444444444433333333333333333
No 35
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=34.93 E-value=1.1e+02 Score=21.56 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=35.4
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
+..+|-++.|+..-+...++.+...+..++..|..+|..|...-
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql 55 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQL 55 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888888888888888888876543
No 36
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=34.55 E-value=1.9e+02 Score=25.39 Aligned_cols=57 Identities=23% Similarity=0.157 Sum_probs=43.1
Q ss_pred eCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028810 138 YSCDEATVLLQKNLE-----NAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 194 (203)
Q Consensus 138 y~l~EA~~lL~~~l~-----~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~~~ 194 (203)
.+.++|.+-+.+++. ....-++.+.+||+-+++-|.++++++--|-+--...||...
T Consensus 356 ~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 417 (463)
T 2xz3_A 356 QTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLD 417 (463)
T ss_dssp SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 467777777666643 334456788999999999999999998888777777787654
No 37
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.58 E-value=43 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 028810 151 LENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRI 192 (203)
Q Consensus 151 l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN~dV~~r~~ 192 (203)
.++++..+..+.++|.-|++=|..+|.| =.-+|.+|++
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~ 75 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREA 75 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHH
Confidence 3788889999999999999999998888 4455555554
No 38
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=32.43 E-value=91 Score=23.42 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
++-+|..-|..++.....++.. |..||..++-++||+
T Consensus 66 nVGdAl~ald~svt~i~~~I~~-------lt~~i~~~~~~i~~~ 102 (106)
T 2yny_A 66 NVGSALSALNTSMKQIEDKIEE-------ILSKIYHIENEIARI 102 (106)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4677777777666665555554 455555555566665
No 39
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=32.35 E-value=1.2e+02 Score=20.77 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 028810 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (203)
Q Consensus 65 ~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k 97 (203)
.....|.+++..+..+|-+++..++.|..+...
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999888764
No 40
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.14 E-value=1.2e+02 Score=21.86 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=36.9
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 131 GAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
|-|..+|-.+.|...-+...+..+...+..++..|..+|..|..-
T Consensus 19 ~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 19 KESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888888888888888888888888877654
No 41
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.95 E-value=1.1e+02 Score=19.94 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 028810 57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (203)
Q Consensus 57 qe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k 97 (203)
+..++|||.+-..|.++..-|+..-.+.+.-++-++.|-..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999888887653
No 42
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=31.41 E-value=1.8e+02 Score=22.34 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=36.5
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIA---DLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~e---dL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
-+|-+||..+|...+..++..+...-. +..-|.+.....=|+++ ||.++..
T Consensus 57 ~iT~~ea~~ll~~dl~~~~~~v~~~~~~~~~~~~l~q~q~dALvs~~--fN~G~~~ 110 (164)
T 1swy_A 57 VITKDEAEKLFNQDVAAAVRGILRNAKLKPVYDSLDAVRECALINMV--FQMGETG 110 (164)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHH--HHHCHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHH--HcCCCcc
Confidence 589999999999999999888776432 34455555555555554 9988754
No 43
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.37 E-value=62 Score=23.53 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=18.7
Q ss_pred eeeCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 028810 136 LEYSCDEATVLLQK-----------NLENAKASLEVLIADLQFLRD 170 (203)
Q Consensus 136 vEy~l~EA~~lL~~-----------~l~~a~~~l~~~~edL~fLrd 170 (203)
+|..++||.++|.. ....+...+..+..||+.|+.
T Consensus 54 ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 54 FDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677766665 233444455555555555544
No 44
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=31.21 E-value=1.7e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 028810 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82 (203)
Q Consensus 52 ~l~~lqe~~~KYk~me~~l~qq~~~L~~kIp 82 (203)
.|..|+...++|+.-...+...+..++.++.
T Consensus 124 ~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~ 154 (346)
T 2nrj_A 124 GITDLRGEIQQNQKYAQQLIEELTKLRDSIG 154 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665554
No 45
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=29.83 E-value=78 Score=24.67 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=29.4
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQI 172 (203)
+---+|+...+-.+++.+..+|..+...+..|++|.
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577888888899999999999999998888774
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.62 E-value=1.7e+02 Score=21.40 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHh
Q 028810 145 VLLQKNLENAKASLEVLIADLQFLRDQVTITQVTV---------ARVYNWDVHQRRIRQAAAA 198 (203)
Q Consensus 145 ~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~---------ARvyN~dV~~r~~~~~~~~ 198 (203)
+-|..++..|++.+.....+++.|++.|...+..+ +.||-=|...=|..+..-.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~ 67 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLV 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777665554333 3468888877666655433
No 47
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.58 E-value=64 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=22.4
Q ss_pred eeeCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 136 LEYSCDEATVLLQK-----------NLENAKASLEVLIADLQFLRDQVT 173 (203)
Q Consensus 136 vEy~l~EA~~lL~~-----------~l~~a~~~l~~~~edL~fLrdQIt 173 (203)
+|..++||.++|.. ....+...+..+..||+.|+.++.
T Consensus 43 ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 43 VEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777765 234455556666666666555544
No 48
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.39 E-value=1.4e+02 Score=20.38 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQI 172 (203)
+.++...+|..++..++..+..+..-+..|..-+
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555555554433
No 49
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.97 E-value=1.5e+02 Score=22.55 Aligned_cols=52 Identities=6% Similarity=0.142 Sum_probs=34.6
Q ss_pred cHHHHhcc-CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 028810 37 DVQTFLSQ-LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (203)
Q Consensus 37 dV~~~~~~-~~--~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktL 88 (203)
+|+..+.. || .+.+..+++++++..+.+..+..+.+....-+.-+-.++.+|
T Consensus 72 qIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555533 66 478888888888888888888777766665555544444444
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.74 E-value=1e+02 Score=23.13 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=36.9
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
+-.+|-++.|+..-....+..+...+..++..|..+|..|...-
T Consensus 61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999998888899999999999999999888877543
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.65 E-value=1e+02 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=35.9
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (203)
Q Consensus 133 nVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~ 175 (203)
+..+|-++.|+..-....+..+...+..++..|..+|..|...
T Consensus 59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677888889888888888888888888888888888887654
No 52
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=27.62 E-value=2.4e+02 Score=22.64 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=76.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEE
Q 028810 47 LDVNSALAFLQERLQQYKLVE-------MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119 (203)
Q Consensus 47 ~~~e~~l~~lqe~~~KYk~me-------~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~ 119 (203)
.+++.+.++|+++|++|.-.- +.+.+...-++.|..-|..--++++.+.+.-...+.+.- ..-+.+=..|
T Consensus 10 ~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~--~~~~~f~~e~- 86 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSK--EYLERFRREG- 86 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTT--GGGSSSSSCC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHhhc-
Confidence 589999999999998876543 344445556666666666667777777654110010000 0000000011
Q ss_pred eCCCCeEEEecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 120 I~~tdkV~LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
.|.+ ++ .+.+.-++|..++..+..+...+.++|.-....+-++|.-|..+
T Consensus 87 -~~~E-----------~~-~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 87 -NEKE-----------MQ-RILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp -CSSS-----------TT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 11 37788999999999999999999999998888888887777654
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.04 E-value=2.2e+02 Score=25.84 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 028810 57 QERLQQY 63 (203)
Q Consensus 57 qe~~~KY 63 (203)
+..+.||
T Consensus 26 ~d~L~k~ 32 (409)
T 1m1j_C 26 ADFFNKY 32 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.47 E-value=1.1e+02 Score=19.89 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=15.5
Q ss_pred ccHHHHhc--cCC-cCHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 36 EDVQTFLS--QLD-LDVNSALAFLQERLQQYKLVEMKLL 71 (203)
Q Consensus 36 edV~~~~~--~~~-~~~e~~l~~lqe~~~KYk~me~~l~ 71 (203)
+=|..+++ .|. .+++...+..+++-.||......+.
T Consensus 5 efIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 5 DFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666 443 4677666666666666655444333
No 55
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.25 E-value=1.7e+02 Score=20.62 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=19.4
Q ss_pred eCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQK----NLENAKASLEVLIADLQFLRDQVTITQ 176 (203)
Q Consensus 138 y~l~EA~~lL~~----~l~~a~~~l~~~~edL~fLrdQItt~E 176 (203)
+|+++...+|.. ....++.+++.+.+.+..|+..+..++
T Consensus 60 ~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 60 FRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp CCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777643 233444444444444444444444433
No 56
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.88 E-value=1.6e+02 Score=22.97 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=31.4
Q ss_pred cHHHHhcc-CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 028810 37 DVQTFLSQ-LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (203)
Q Consensus 37 dV~~~~~~-~~--~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikkt 87 (203)
+|+..+.. || .+.+..+++++++..+.+..+..+.+....-+.-+-.++.+
T Consensus 72 qIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35545533 65 47777888888888887777776666555444444433333
No 57
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.35 E-value=1.9e+02 Score=23.20 Aligned_cols=10 Identities=10% Similarity=-0.057 Sum_probs=5.2
Q ss_pred eCHHHHHHHH
Q 028810 138 YSCDEATVLL 147 (203)
Q Consensus 138 y~l~EA~~lL 147 (203)
+|++|...+|
T Consensus 64 ~~l~~i~~~~ 73 (278)
T 1r8e_A 64 TPLEEMKKAQ 73 (278)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 3555555555
No 58
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=24.57 E-value=88 Score=21.12 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 028810 147 LQKNLENAKASLEVLIADLQF-----LRDQVTITQVT 178 (203)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~f-----LrdQItt~EVn 178 (203)
+.+-+..+++.+....++|+| |||||..++..
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444566666666666666665 78999888754
No 59
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=24.56 E-value=2.4e+02 Score=23.77 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVY 183 (203)
Q Consensus 141 ~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvy 183 (203)
++++.-|+-|+..++..+..+.-++.-|...+++.|-||+-+-
T Consensus 104 ~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 4589999999999999999999999999999999999998764
No 60
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=24.51 E-value=1.7e+02 Score=22.53 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028810 173 TITQVTVARVYNWDVHQ 189 (203)
Q Consensus 173 tt~EVn~ARvyN~dV~~ 189 (203)
-.+-.|+.++|.|-+++
T Consensus 74 geiA~nL~~LY~y~~~~ 90 (145)
T 1vh6_A 74 IELSASMGAMYDYMYRR 90 (145)
T ss_dssp HHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56788999999999877
No 61
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=24.24 E-value=1.2e+02 Score=21.48 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=6.0
Q ss_pred eCHHHHHHHHH
Q 028810 138 YSCDEATVLLQ 148 (203)
Q Consensus 138 y~l~EA~~lL~ 148 (203)
+|++|...+|.
T Consensus 59 ~sl~~I~~~l~ 69 (108)
T 2vz4_A 59 FPLDEVAALLD 69 (108)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 45555555553
No 62
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=24.21 E-value=1.9e+02 Score=23.95 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=20.5
Q ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQK----NLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 139 ~l~EA~~lL~~----~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
|+++...+|.. ....+..++..+.+.++.|+..+..++..++
T Consensus 62 sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~ 107 (249)
T 3qao_A 62 PLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIK 107 (249)
T ss_dssp CHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555542 2344444555555555555555554444443
No 63
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=23.94 E-value=1.1e+02 Score=25.20 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=36.0
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIA---DLQFLRDQVTITQVTVARVYNWDVH 188 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~e---dL~fLrdQItt~EVn~ARvyN~dV~ 188 (203)
-+|-+||..+|.+.+..++..+...-. +..-|.+.....=|+++ ||.++.
T Consensus 136 ~iT~~ea~~ll~~Dl~~~~~~v~~~~~~~~~~~~l~q~q~dALvSfa--fNvG~g 188 (241)
T 2qb0_B 136 VITKDEAEKLFCQDVDAAVRGILRNAKLKPVYDSLDCVRRAALINMV--FQMGET 188 (241)
T ss_dssp BCCTTHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHH--HHHCHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHH--Hhcccc
Confidence 489999999999999998887775432 34445555555555554 999885
No 64
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=23.43 E-value=1.5e+02 Score=25.61 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCCCCcccccccHHHHhccCCcCHHHHH---HHHHHHH------HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 028810 26 RRGIPAAQFVEDVQTFLSQLDLDVNSAL---AFLQERL------QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (203)
Q Consensus 26 ~rgIP~A~FiedV~~~~~~~~~~~e~~l---~~lqe~~------~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~ 96 (203)
.+|||.+-|.--|.-||... .++..++ +.+...+ ......++.+.+++..+..+-+++.. +|+.|++
T Consensus 189 ~~Gi~a~~l~~~vphYl~~~-pdP~AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~---~V~~LE~ 264 (319)
T 2p90_A 189 DKGKNVSGYTVHVPHYVSAS-PYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQR---VVGALEQ 264 (319)
T ss_dssp HTTCCEEEEEEEEEGGGTTS-CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHH
T ss_pred HCCCCEEEEEEecCcccCCC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHh
Confidence 38999999999999999764 3555544 4444443 56667777888888888887777775 4455554
Q ss_pred h
Q 028810 97 K 97 (203)
Q Consensus 97 k 97 (203)
+
T Consensus 265 ~ 265 (319)
T 2p90_A 265 Q 265 (319)
T ss_dssp H
T ss_pred h
Confidence 4
No 65
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=23.26 E-value=38 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=15.3
Q ss_pred ccccHHHHhccCC--cCHHHHHHHHHH
Q 028810 34 FVEDVQTFLSQLD--LDVNSALAFLQE 58 (203)
Q Consensus 34 FiedV~~~~~~~~--~~~e~~l~~lqe 58 (203)
.|+||-+||...| +..++.++.||.
T Consensus 40 viedihdfmqgggsggklqemmkefqq 66 (102)
T 1p68_A 40 VIEDIHDFMQGGGSGGKLQEMMKEFQQ 66 (102)
T ss_dssp HHHHHHTTTTTSSTTTHHHHTHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 5899999997654 333444444443
No 66
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=22.72 E-value=2.3e+02 Score=24.61 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=35.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028810 138 YSCDEATVLLQKNLENAKASLEVL---IADLQFLRDQVTITQVTVARVYNWDVHQ 189 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~---~edL~fLrdQItt~EVn~ARvyN~dV~~ 189 (203)
++-+||.++|.+.++.+++.+... ..+.+.+-++-...=|.+ +||.++..
T Consensus 72 ~t~~~a~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~fn~G~~~ 124 (514)
T 3sn6_R 72 ITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM--VFQMGETG 124 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHH--HHHTHHHH
T ss_pred cCHHHHHHHHHHhHHHHHHHHHhhccccchhhcCCHHHHHHHHHh--HHhhCchh
Confidence 899999999999999999988773 444444554444444444 48887654
No 67
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.63 E-value=3.8e+02 Score=23.36 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccce
Q 028810 48 DVNSALAFLQERLQQYKLVEMKL-------------LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l-------------~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~ 114 (203)
++++.+..+++.+.+.......+ ..|+..++.++...++-+.-+..|.+. ..+ ..+|+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~---~~~lAgal 317 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE---HGN---ELPISAGF 317 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCS---EEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCC---cceeEEEE
Q ss_pred eeeEEeCCCCeEEEecccc
Q 028810 115 FSRARIEDTDSVCLWLGAN 133 (203)
Q Consensus 115 y~kA~I~~tdkV~LwLGAn 133 (203)
| +-..++++-|.|+.
T Consensus 318 ~----~~~~~~~~y~y~gs 332 (426)
T 1lrz_A 318 F----FINPFEVVYYAGGT 332 (426)
T ss_dssp E----EECSSCEEEEEEEE
T ss_pred E----EEECCEEEEEecCc
No 68
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.04 E-value=2e+02 Score=19.92 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=30.1
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYN 184 (203)
Q Consensus 137 Ey~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARvyN 184 (203)
.-.+++-+.=|+.+++-.+..++.++.-+..-+.+|..++.-+..++.
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666554
No 69
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.72 E-value=1.8e+02 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (203)
Q Consensus 139 ~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQIt 173 (203)
+.++...+|..+++.+...+..+..-++.|+.-+.
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766655
No 70
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.68 E-value=2.1e+02 Score=21.23 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (203)
Q Consensus 140 l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQ 171 (203)
.++...+|..++..+++.+..+..-+..|..-
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555543
No 71
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.34 E-value=3e+02 Score=24.04 Aligned_cols=55 Identities=25% Similarity=0.108 Sum_probs=38.3
Q ss_pred HHHHhccCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 028810 38 VQTFLSQLDLDVNSALAFLQERLQ-----QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (203)
Q Consensus 38 V~~~~~~~~~~~e~~l~~lqe~~~-----KYk~me~~l~qq~~~L~~kIpdikktLe~V~~ 93 (203)
+..++... .+++++++.++..++ ..+.+-..+...++.+...|-.++++|..|..
T Consensus 348 l~~~~~G~-~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 407 (463)
T 2xz3_A 348 VINAASGR-QTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVAS 407 (463)
T ss_dssp HHHHHTTS-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555432 589999999988763 44556667777777777778888777776553
No 72
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.21 E-value=2.5e+02 Score=20.71 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.5
Q ss_pred eeCHHHHHHHHHH
Q 028810 137 EYSCDEATVLLQK 149 (203)
Q Consensus 137 Ey~l~EA~~lL~~ 149 (203)
-+|++|...+|..
T Consensus 57 G~sl~eI~~~l~~ 69 (135)
T 1q06_A 57 GFNLEESGELVNL 69 (135)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 4689999999964
No 73
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.16 E-value=1.1e+02 Score=17.71 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHHHhchhhHHHHHHHHH
Q 028810 70 LLAQQRDLQAKIPDIEKCLDIVA 92 (203)
Q Consensus 70 l~qq~~~L~~kIpdikktLe~V~ 92 (203)
|..+-..|++|+..+++-|+.++
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666654
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.13 E-value=2e+02 Score=22.02 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCCeeEEEEcccceeeeEEeCCCCeEE
Q 028810 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (203)
Q Consensus 48 ~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~tdkV~ 127 (203)
.+-..|+.-++-.+.-...+..|.+-...|...-...-.+=.+|..|.+--+.. +|.
T Consensus 12 AC~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~e---------------kaq-------- 68 (121)
T 3mq7_A 12 AARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAE---------------KAQ-------- 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH--------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH--------
Confidence 344567777777888888888888888888776655555555555554321000 000
Q ss_pred EecccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVA 180 (203)
Q Consensus 128 LwLGAnVmvEy~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~A 180 (203)
| ..=.+-|+..++.+...|......++.||.+...+.+.++
T Consensus 69 ---~---------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 69 ---G---------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp ---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 0 1125567788888888888888888888888776666554
No 75
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=20.92 E-value=55 Score=26.68 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=43.7
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 028810 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (203)
Q Consensus 27 rgIP~A~FiedV~~~~~~~~~~~e~~l~~lqe~~~KYk~me~~l~qq~~~L~~kIpdikktLe~V~~L~~ 96 (203)
.|.|.-..--++. -+...+-+ ++.+..++..|..+-.....+.+.+..|+.++|+....-.+++|+..
T Consensus 183 ~G~pa~~~~~~~~-g~~r~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 250 (259)
T 3hsq_A 183 DGNPSTVVGLNSV-GMKRAGFS-PEVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKYIIKFFRD 250 (259)
T ss_dssp ETTTTEEEEECHH-HHHHTTCC-HHHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred eccCcEEEeeccc-ceeeCCCC-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4566433323332 33333222 34567777777777655567889999999998887777788888863
No 76
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=20.62 E-value=34 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.9
Q ss_pred CeEEEecccce-eeeeCHHHHHHHHHH
Q 028810 124 DSVCLWLGANV-MLEYSCDEATVLLQK 149 (203)
Q Consensus 124 dkV~LwLGAnV-mvEy~l~EA~~lL~~ 149 (203)
.+|+|.||+|+ --+..+..|...|.+
T Consensus 5 ~~v~i~LGSNlGd~~~~l~~A~~~L~~ 31 (161)
T 3qbc_A 5 IQAYLGLGSNIGDRESQLNDAIKILNE 31 (161)
T ss_dssp EEEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCccCHHHHHHHHHHHHhc
Confidence 47999999998 455666666666654
No 77
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.46 E-value=3.4e+02 Score=22.71 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=38.3
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028810 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARV 182 (203)
Q Consensus 138 y~l~EA~~lL~~~l~~a~~~l~~~~edL~fLrdQItt~EVn~ARv 182 (203)
=+-+.-+.+|..++..+++.+..++..|+.+++++.++..-++.+
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999888888877765
Done!