Query 028812
Match_columns 203
No_of_seqs 191 out of 1870
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 5.7E-29 1.2E-33 172.7 17.1 151 45-198 8-158 (160)
2 KOG0027 Calmodulin and related 100.0 5.5E-27 1.2E-31 165.5 16.5 145 51-197 2-150 (151)
3 KOG0028 Ca2+-binding protein ( 99.9 2.5E-24 5.4E-29 146.4 16.2 147 49-197 25-171 (172)
4 PTZ00183 centrin; Provisional 99.9 3.9E-24 8.4E-29 152.2 17.9 149 49-199 9-157 (158)
5 PTZ00184 calmodulin; Provision 99.9 3.6E-23 7.8E-28 145.7 17.0 144 51-196 5-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 1.3E-21 2.9E-26 132.2 14.6 146 47-198 22-167 (171)
7 KOG0037 Ca2+-binding protein, 99.9 3.3E-21 7.2E-26 138.1 16.7 132 55-195 55-187 (221)
8 KOG0030 Myosin essential light 99.9 4.7E-20 1E-24 122.7 14.3 142 52-196 6-151 (152)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.8 9.7E-20 2.1E-24 130.9 13.7 147 51-198 20-177 (193)
10 KOG0034 Ca2+/calmodulin-depend 99.8 7.1E-20 1.5E-24 131.6 12.4 144 51-198 27-177 (187)
11 KOG0036 Predicted mitochondria 99.7 7.2E-17 1.6E-21 125.5 15.2 140 51-198 8-148 (463)
12 KOG4223 Reticulocalbin, calume 99.5 2.6E-14 5.7E-19 108.4 8.9 134 57-192 163-301 (325)
13 PLN02964 phosphatidylserine de 99.5 1.8E-13 3.8E-18 114.9 13.4 121 50-177 136-274 (644)
14 KOG0038 Ca2+-binding kinase in 99.5 4.2E-13 9.1E-18 90.4 11.5 146 48-198 16-179 (189)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.5 1.9E-13 4.1E-18 98.5 10.4 103 56-158 63-175 (193)
16 KOG0027 Calmodulin and related 99.4 1.8E-12 4E-17 91.4 11.4 108 92-200 7-117 (151)
17 PF13499 EF-hand_7: EF-hand do 99.4 9.5E-13 2.1E-17 79.7 8.1 64 131-194 1-66 (66)
18 COG5126 FRQ1 Ca2+-binding prot 99.4 5.8E-12 1.3E-16 87.9 12.4 103 54-158 53-156 (160)
19 cd05022 S-100A13 S-100A13: S-1 99.4 7.5E-13 1.6E-17 84.2 7.0 66 130-197 8-76 (89)
20 KOG0377 Protein serine/threoni 99.4 1.1E-11 2.5E-16 97.6 13.8 138 56-195 463-614 (631)
21 PTZ00183 centrin; Provisional 99.4 1.2E-11 2.6E-16 87.7 12.7 104 93-199 17-121 (158)
22 KOG2643 Ca2+ binding protein, 99.4 4.5E-13 9.7E-18 105.2 5.4 98 56-158 232-346 (489)
23 KOG0037 Ca2+-binding protein, 99.4 8.5E-12 1.8E-16 90.0 10.4 130 50-194 87-218 (221)
24 PF13499 EF-hand_7: EF-hand do 99.4 3.6E-12 7.8E-17 77.1 7.3 62 58-119 1-66 (66)
25 KOG4223 Reticulocalbin, calume 99.3 1.4E-11 3E-16 93.8 10.5 140 55-195 75-227 (325)
26 cd05022 S-100A13 S-100A13: S-1 99.3 7.7E-12 1.7E-16 79.6 7.6 67 56-122 7-76 (89)
27 PTZ00184 calmodulin; Provision 99.3 4.5E-11 9.8E-16 83.8 12.3 106 93-200 11-116 (149)
28 cd05027 S-100B S-100B: S-100B 99.3 1.6E-11 3.5E-16 78.2 8.1 67 130-198 8-81 (88)
29 cd05027 S-100B S-100B: S-100B 99.3 3.6E-11 7.9E-16 76.6 8.4 67 56-122 7-80 (88)
30 KOG0034 Ca2+/calmodulin-depend 99.3 7.9E-11 1.7E-15 85.0 10.7 101 59-159 68-176 (187)
31 cd05029 S-100A6 S-100A6: S-100 99.2 5E-11 1.1E-15 75.9 7.9 66 130-197 10-80 (88)
32 cd05031 S-100A10_like S-100A10 99.2 3.3E-11 7.2E-16 78.1 6.4 68 130-199 8-82 (94)
33 cd05026 S-100Z S-100Z: S-100Z 99.2 9E-11 2E-15 75.7 7.7 67 130-196 10-81 (93)
34 PF13833 EF-hand_8: EF-hand do 99.2 9.9E-11 2.2E-15 67.8 7.1 52 143-196 1-53 (54)
35 smart00027 EH Eps15 homology d 99.2 1E-10 2.2E-15 76.1 7.9 71 50-122 3-73 (96)
36 cd05025 S-100A1 S-100A1: S-100 99.2 1.6E-10 3.4E-15 74.6 8.2 67 130-196 9-80 (92)
37 KOG0028 Ca2+-binding protein ( 99.2 4E-10 8.6E-15 77.5 10.0 103 93-198 33-136 (172)
38 PLN02964 phosphatidylserine de 99.2 3.7E-10 8.1E-15 95.2 11.7 126 63-197 113-244 (644)
39 cd05026 S-100Z S-100Z: S-100Z 99.2 2.9E-10 6.3E-15 73.4 8.2 67 56-122 9-82 (93)
40 cd05025 S-100A1 S-100A1: S-100 99.1 3.6E-10 7.9E-15 72.9 8.3 67 56-122 8-81 (92)
41 cd05031 S-100A10_like S-100A10 99.1 3.2E-10 7E-15 73.4 8.0 67 56-122 7-80 (94)
42 cd00052 EH Eps15 homology doma 99.1 3E-10 6.5E-15 68.7 7.3 60 133-196 2-61 (67)
43 cd00052 EH Eps15 homology doma 99.1 2.8E-10 6E-15 68.9 7.1 61 60-122 2-62 (67)
44 KOG2562 Protein phosphatase 2 99.1 6.1E-10 1.3E-14 88.5 10.6 136 55-194 273-422 (493)
45 cd05029 S-100A6 S-100A6: S-100 99.1 4.5E-10 9.7E-15 71.6 8.1 67 56-122 9-80 (88)
46 smart00027 EH Eps15 homology d 99.1 5E-10 1.1E-14 72.8 8.5 63 129-195 9-71 (96)
47 KOG0036 Predicted mitochondria 99.1 1.6E-09 3.4E-14 85.1 12.5 129 55-196 49-183 (463)
48 cd00213 S-100 S-100: S-100 dom 99.1 3.8E-10 8.2E-15 72.2 7.1 70 129-198 7-81 (88)
49 cd00213 S-100 S-100: S-100 dom 99.1 3.4E-10 7.4E-15 72.4 6.8 69 54-122 5-80 (88)
50 PF13833 EF-hand_8: EF-hand do 99.1 5.4E-10 1.2E-14 64.7 6.6 52 70-121 1-53 (54)
51 cd00051 EFh EF-hand, calcium b 99.1 1E-09 2.3E-14 64.8 7.7 61 132-194 2-62 (63)
52 cd05023 S-100A11 S-100A11: S-1 99.1 9.5E-10 2.1E-14 70.2 7.8 68 130-197 9-81 (89)
53 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.6E-10 1.9E-14 73.6 7.5 62 129-196 47-108 (116)
54 cd00051 EFh EF-hand, calcium b 99.1 1.5E-09 3.3E-14 64.0 7.9 61 59-119 2-62 (63)
55 PF14658 EF-hand_9: EF-hand do 99.0 3.3E-09 7.1E-14 62.7 7.0 61 134-196 2-64 (66)
56 cd05023 S-100A11 S-100A11: S-1 99.0 5.5E-09 1.2E-13 66.7 8.5 68 55-122 7-81 (89)
57 KOG4251 Calcium binding protei 99.0 3.4E-09 7.5E-14 77.9 7.9 140 54-195 98-308 (362)
58 KOG0040 Ca2+-binding actin-bun 99.0 1.2E-08 2.5E-13 90.8 12.5 136 49-194 2245-2396(2399)
59 cd00252 SPARC_EC SPARC_EC; ext 98.9 5.6E-09 1.2E-13 69.8 6.9 64 52-119 43-106 (116)
60 cd05030 calgranulins Calgranul 98.9 6.7E-09 1.5E-13 66.3 6.5 66 130-197 8-80 (88)
61 PF14658 EF-hand_9: EF-hand do 98.9 1.5E-08 3.2E-13 59.9 6.9 61 61-121 2-64 (66)
62 KOG0041 Predicted Ca2+-binding 98.9 1.5E-08 3.2E-13 72.3 7.7 67 129-197 98-164 (244)
63 cd05030 calgranulins Calgranul 98.8 3.5E-08 7.5E-13 63.0 7.3 67 56-122 7-80 (88)
64 PF12763 EF-hand_4: Cytoskelet 98.7 7.2E-08 1.6E-12 63.1 7.6 71 49-122 2-72 (104)
65 KOG0041 Predicted Ca2+-binding 98.7 1.4E-07 3.1E-12 67.3 9.3 106 52-157 94-202 (244)
66 KOG1029 Endocytic adaptor prot 98.7 3.3E-07 7.2E-12 77.3 11.5 140 49-195 8-256 (1118)
67 PF00036 EF-hand_1: EF hand; 98.6 5.4E-08 1.2E-12 48.3 3.7 28 58-85 1-28 (29)
68 KOG0031 Myosin regulatory ligh 98.6 2.9E-07 6.3E-12 63.1 8.0 66 55-120 99-164 (171)
69 PF00036 EF-hand_1: EF hand; 98.6 9.9E-08 2.2E-12 47.4 4.0 25 133-157 3-27 (29)
70 PF12763 EF-hand_4: Cytoskelet 98.5 1.1E-06 2.4E-11 57.5 8.0 63 128-195 8-70 (104)
71 KOG2643 Ca2+ binding protein, 98.5 8.5E-07 1.8E-11 70.5 8.8 124 66-197 208-347 (489)
72 cd05024 S-100A10 S-100A10: A s 98.5 2E-06 4.4E-11 54.5 8.6 66 56-122 7-77 (91)
73 KOG4666 Predicted phosphate ac 98.5 2.5E-07 5.4E-12 70.9 4.8 102 93-198 259-361 (412)
74 KOG0038 Ca2+-binding kinase in 98.4 3.3E-06 7.2E-11 57.5 8.9 99 61-159 75-178 (189)
75 KOG0377 Protein serine/threoni 98.4 1.1E-06 2.4E-11 70.1 7.5 68 92-159 546-616 (631)
76 PF13405 EF-hand_6: EF-hand do 98.4 6.5E-07 1.4E-11 45.3 4.0 29 132-160 2-31 (31)
77 cd05024 S-100A10 S-100A10: A s 98.4 3.6E-06 7.7E-11 53.4 7.7 66 130-196 8-76 (91)
78 KOG0030 Myosin essential light 98.4 6.2E-06 1.3E-10 55.7 9.0 107 91-198 9-118 (152)
79 PF13405 EF-hand_6: EF-hand do 98.3 8.1E-07 1.7E-11 44.9 3.7 30 58-87 1-31 (31)
80 KOG4251 Calcium binding protei 98.3 2.6E-06 5.6E-11 63.0 7.6 96 95-192 238-341 (362)
81 KOG0169 Phosphoinositide-speci 98.3 1.2E-05 2.6E-10 68.3 12.5 143 53-200 132-278 (746)
82 PRK12309 transaldolase/EF-hand 98.3 5.6E-06 1.2E-10 66.7 9.4 54 128-196 332-385 (391)
83 KOG2562 Protein phosphatase 2 98.2 9.6E-06 2.1E-10 65.2 8.4 132 56-193 224-376 (493)
84 KOG0751 Mitochondrial aspartat 98.2 1.4E-05 3E-10 64.8 8.9 96 66-163 83-212 (694)
85 PF14788 EF-hand_10: EF hand; 98.2 1.1E-05 2.5E-10 45.0 5.8 49 74-122 2-50 (51)
86 PF13202 EF-hand_5: EF hand; P 98.2 4.2E-06 9.1E-11 40.0 3.5 23 133-155 2-24 (25)
87 KOG0040 Ca2+-binding actin-bun 98.1 1.9E-05 4.1E-10 71.3 9.7 99 93-193 2253-2358(2399)
88 KOG0751 Mitochondrial aspartat 98.1 6.3E-05 1.4E-09 61.1 11.7 103 55-160 31-138 (694)
89 PF13202 EF-hand_5: EF hand; P 98.1 4.9E-06 1.1E-10 39.7 3.1 24 59-82 1-24 (25)
90 PRK12309 transaldolase/EF-hand 98.1 1.8E-05 3.9E-10 63.8 7.9 59 87-159 328-386 (391)
91 PF14788 EF-hand_10: EF hand; 98.0 2.9E-05 6.2E-10 43.4 6.0 48 147-196 2-49 (51)
92 PF10591 SPARC_Ca_bdg: Secrete 97.9 6E-06 1.3E-10 55.1 2.5 62 128-193 52-113 (113)
93 KOG0046 Ca2+-binding actin-bun 97.8 7.3E-05 1.6E-09 61.1 6.9 74 48-122 10-86 (627)
94 PF10591 SPARC_Ca_bdg: Secrete 97.8 1E-05 2.2E-10 54.0 1.4 62 54-117 51-112 (113)
95 PF09279 EF-hand_like: Phospho 97.7 0.00022 4.8E-09 44.8 7.1 67 131-198 1-71 (83)
96 KOG4065 Uncharacterized conser 97.5 0.00037 8.1E-09 45.6 6.1 59 135-193 72-142 (144)
97 KOG4065 Uncharacterized conser 97.5 0.0019 4.1E-08 42.4 8.5 64 55-118 64-142 (144)
98 KOG0046 Ca2+-binding actin-bun 97.4 0.00057 1.2E-08 56.1 7.2 64 130-194 19-83 (627)
99 KOG4666 Predicted phosphate ac 97.4 0.00046 1E-08 53.4 6.3 102 57-160 259-361 (412)
100 KOG0998 Synaptic vesicle prote 97.4 0.00038 8.1E-09 61.8 6.3 142 47-195 119-344 (847)
101 PF05042 Caleosin: Caleosin re 97.4 0.0028 6E-08 44.9 9.0 139 56-195 6-165 (174)
102 KOG1707 Predicted Ras related/ 97.3 0.0029 6.3E-08 52.9 10.1 144 47-194 185-375 (625)
103 KOG0035 Ca2+-binding actin-bun 97.2 0.0025 5.5E-08 55.9 8.9 102 52-154 742-848 (890)
104 smart00054 EFh EF-hand, calciu 97.2 0.00059 1.3E-08 32.7 3.0 26 59-84 2-27 (29)
105 smart00054 EFh EF-hand, calciu 97.1 0.00076 1.7E-08 32.3 3.2 26 170-195 2-27 (29)
106 KOG1955 Ral-GTPase effector RA 97.0 0.0018 3.8E-08 53.0 5.9 79 46-126 220-298 (737)
107 KOG1955 Ral-GTPase effector RA 97.0 0.0025 5.4E-08 52.1 6.3 70 129-202 230-304 (737)
108 KOG3555 Ca2+-binding proteogly 96.9 0.002 4.3E-08 50.3 5.1 109 57-173 211-322 (434)
109 PF09279 EF-hand_like: Phospho 96.9 0.0029 6.2E-08 39.7 5.1 64 58-122 1-70 (83)
110 PLN02952 phosphoinositide phos 96.8 0.017 3.6E-07 49.4 10.3 91 106-197 13-111 (599)
111 KOG1029 Endocytic adaptor prot 96.6 0.0056 1.2E-07 52.7 5.9 67 54-122 192-258 (1118)
112 KOG0998 Synaptic vesicle prote 96.3 0.007 1.5E-07 54.0 5.3 137 52-195 6-189 (847)
113 PF05042 Caleosin: Caleosin re 96.0 0.14 3.1E-06 36.4 9.5 31 166-196 94-124 (174)
114 KOG0169 Phosphoinositide-speci 95.7 0.12 2.5E-06 44.9 9.4 96 94-196 137-232 (746)
115 KOG3555 Ca2+-binding proteogly 95.5 0.027 5.8E-07 44.2 4.6 64 129-198 249-312 (434)
116 KOG4578 Uncharacterized conser 95.3 0.02 4.4E-07 44.6 3.4 64 95-158 335-398 (421)
117 PF09069 EF-hand_3: EF-hand; 95.1 0.2 4.3E-06 31.8 6.9 66 130-198 3-77 (90)
118 KOG1265 Phospholipase C [Lipid 94.9 0.96 2.1E-05 40.4 12.6 126 67-199 158-302 (1189)
119 KOG4578 Uncharacterized conser 94.9 0.03 6.6E-07 43.7 3.3 67 55-121 331-398 (421)
120 KOG4347 GTPase-activating prot 94.8 0.064 1.4E-06 45.6 5.2 77 74-152 535-612 (671)
121 PF05517 p25-alpha: p25-alpha 94.6 0.34 7.4E-06 34.2 7.9 63 60-122 2-70 (154)
122 KOG0042 Glycerol-3-phosphate d 94.5 0.13 2.9E-06 43.2 6.3 81 45-125 581-661 (680)
123 PF05517 p25-alpha: p25-alpha 93.9 0.76 1.6E-05 32.4 8.5 56 140-195 12-68 (154)
124 KOG3866 DNA-binding protein of 93.9 0.14 3E-06 39.8 4.9 69 133-201 247-329 (442)
125 KOG3866 DNA-binding protein of 93.8 0.34 7.4E-06 37.8 6.9 61 61-121 248-324 (442)
126 PF08726 EFhand_Ca_insen: Ca2+ 93.8 0.047 1E-06 32.8 1.8 56 128-193 4-66 (69)
127 KOG0042 Glycerol-3-phosphate d 93.4 0.19 4.1E-06 42.4 5.3 62 132-195 595-656 (680)
128 PLN02952 phosphoinositide phos 93.4 0.94 2E-05 39.1 9.5 87 70-157 13-109 (599)
129 KOG4347 GTPase-activating prot 92.7 0.2 4.4E-06 42.7 4.5 77 110-189 535-611 (671)
130 KOG2243 Ca2+ release channel ( 92.7 0.25 5.3E-06 46.0 5.2 59 135-196 4062-4120(5019)
131 KOG0035 Ca2+-binding actin-bun 91.7 0.56 1.2E-05 41.9 6.2 69 129-197 746-817 (890)
132 KOG2243 Ca2+ release channel ( 91.7 0.35 7.6E-06 45.1 5.0 57 63-120 4063-4119(5019)
133 PF09068 EF-hand_2: EF hand; 91.2 2.6 5.7E-05 28.7 7.9 28 132-159 99-126 (127)
134 KOG4403 Cell surface glycoprot 91.1 1.3 2.8E-05 36.2 7.1 101 70-175 41-145 (575)
135 PF08726 EFhand_Ca_insen: Ca2+ 91.0 0.32 7E-06 29.2 2.9 55 55-117 4-65 (69)
136 cd07313 terB_like_2 tellurium 90.2 1.6 3.5E-05 28.2 6.1 84 70-155 12-97 (104)
137 PLN02222 phosphoinositide phos 89.2 1.7 3.6E-05 37.4 6.8 66 129-196 24-90 (581)
138 PLN02228 Phosphoinositide phos 88.4 2.5 5.4E-05 36.3 7.3 66 129-196 23-92 (567)
139 PF09069 EF-hand_3: EF-hand; 88.1 5 0.00011 25.5 7.6 27 57-84 3-29 (90)
140 PLN02230 phosphoinositide phos 87.9 3.4 7.3E-05 35.8 7.9 69 128-197 27-103 (598)
141 KOG1264 Phospholipase C [Lipid 87.4 3.9 8.5E-05 36.5 7.9 134 59-195 146-292 (1267)
142 TIGR01848 PHA_reg_PhaR polyhyd 87.2 2.7 5.8E-05 27.5 5.3 20 138-157 11-30 (107)
143 KOG4286 Dystrophin-like protei 86.8 9.9 0.00022 33.7 9.9 137 55-197 418-581 (966)
144 PF08976 DUF1880: Domain of un 86.8 0.84 1.8E-05 30.3 2.9 32 90-121 4-35 (118)
145 KOG3077 Uncharacterized conser 86.4 13 0.00028 28.6 11.1 71 54-124 61-132 (260)
146 KOG1707 Predicted Ras related/ 86.3 3.1 6.8E-05 35.6 6.6 88 50-143 308-399 (625)
147 PF14513 DAG_kinase_N: Diacylg 85.8 3 6.4E-05 28.8 5.3 69 72-142 6-81 (138)
148 PF08976 DUF1880: Domain of un 85.3 0.92 2E-05 30.1 2.5 31 165-195 4-34 (118)
149 KOG0039 Ferric reductase, NADH 84.4 2.3 5E-05 37.3 5.3 80 110-196 4-89 (646)
150 PRK09430 djlA Dna-J like membr 83.3 9.1 0.0002 29.7 7.7 96 69-176 67-174 (267)
151 PF05099 TerB: Tellurite resis 83.1 0.68 1.5E-05 31.8 1.4 105 56-163 23-132 (140)
152 PLN02223 phosphoinositide phos 83.0 6.5 0.00014 33.5 7.2 69 128-197 14-93 (537)
153 PF08414 NADPH_Ox: Respiratory 82.9 7.4 0.00016 25.1 5.8 61 57-122 30-93 (100)
154 KOG2871 Uncharacterized conser 81.1 2 4.4E-05 34.5 3.3 65 56-120 308-373 (449)
155 PF07879 PHB_acc_N: PHB/PHA ac 80.5 4.8 0.0001 23.7 3.9 39 137-177 10-58 (64)
156 KOG1265 Phospholipase C [Lipid 79.7 28 0.0006 31.8 9.9 67 55-121 219-299 (1189)
157 PLN02228 Phosphoinositide phos 79.0 16 0.00036 31.5 8.3 67 54-122 21-93 (567)
158 cd07316 terB_like_DjlA N-termi 77.3 16 0.00035 23.4 7.5 82 70-153 12-96 (106)
159 PF11116 DUF2624: Protein of u 76.9 16 0.00034 23.0 8.0 51 72-122 13-63 (85)
160 KOG2871 Uncharacterized conser 76.8 3.1 6.8E-05 33.5 3.2 63 129-193 308-371 (449)
161 COG4359 Uncharacterized conser 76.4 15 0.00032 26.9 6.3 81 105-200 9-91 (220)
162 cd07176 terB tellurite resista 75.8 5.9 0.00013 25.7 4.0 80 70-152 15-99 (111)
163 PLN02222 phosphoinositide phos 75.7 15 0.00031 31.9 7.1 65 55-121 23-90 (581)
164 PF00404 Dockerin_1: Dockerin 72.2 7.1 0.00015 17.5 2.5 16 67-82 1-16 (21)
165 PF07308 DUF1456: Protein of u 72.0 15 0.00033 21.9 4.7 43 150-194 17-59 (68)
166 PLN02230 phosphoinositide phos 72.0 30 0.00065 30.2 8.1 66 55-121 27-102 (598)
167 COG4103 Uncharacterized protei 71.6 18 0.00039 25.1 5.5 29 166-194 64-92 (148)
168 PF02761 Cbl_N2: CBL proto-onc 69.4 25 0.00055 22.1 6.3 68 90-159 4-71 (85)
169 cd07313 terB_like_2 tellurium 68.9 5.4 0.00012 25.7 2.6 81 106-189 12-93 (104)
170 PF14513 DAG_kinase_N: Diacylg 67.4 34 0.00074 23.7 6.3 71 107-178 5-79 (138)
171 KOG4004 Matricellular protein 67.3 2.1 4.6E-05 31.3 0.4 56 136-195 193-249 (259)
172 PF12174 RST: RCD1-SRO-TAF4 (R 67.1 5.2 0.00011 24.1 2.0 33 127-159 22-54 (70)
173 COG5562 Phage envelope protein 66.8 4.8 0.0001 27.5 2.0 27 173-199 77-103 (137)
174 smart00513 SAP Putative DNA-bi 66.7 15 0.00033 18.5 4.3 30 146-175 3-32 (35)
175 PF02037 SAP: SAP domain; Int 66.0 16 0.00035 18.5 4.0 30 146-175 3-32 (35)
176 KOG3449 60S acidic ribosomal p 65.3 37 0.00079 22.4 6.1 45 132-178 3-47 (112)
177 KOG0113 U1 small nuclear ribon 63.0 29 0.00063 27.3 5.7 86 55-140 39-126 (335)
178 PF08730 Rad33: Rad33; InterP 62.7 54 0.0012 23.5 10.7 89 50-139 7-132 (170)
179 KOG4403 Cell surface glycoprot 62.2 16 0.00035 30.2 4.4 55 105-159 40-97 (575)
180 PF12174 RST: RCD1-SRO-TAF4 (R 62.0 12 0.00025 22.6 2.8 50 73-125 8-57 (70)
181 PF03672 UPF0154: Uncharacteri 60.3 22 0.00049 21.0 3.7 32 71-102 29-60 (64)
182 KOG1954 Endocytosis/signaling 59.9 15 0.00032 30.1 3.8 57 131-192 445-501 (532)
183 KOG3449 60S acidic ribosomal p 59.4 49 0.0011 21.8 6.0 56 59-119 3-58 (112)
184 PF01023 S_100: S-100/ICaBP ty 58.9 24 0.00051 19.0 3.5 29 57-85 6-36 (44)
185 COG4103 Uncharacterized protei 58.1 61 0.0013 22.6 8.2 92 61-156 34-127 (148)
186 PF08414 NADPH_Ox: Respiratory 57.8 49 0.0011 21.4 6.5 60 94-159 31-93 (100)
187 KOG1954 Endocytosis/signaling 57.8 19 0.00041 29.5 4.1 61 55-118 442-502 (532)
188 KOG4301 Beta-dystrobrevin [Cyt 57.7 1E+02 0.0022 24.9 7.9 58 135-195 115-172 (434)
189 KOG4004 Matricellular protein 56.2 4.6 9.9E-05 29.6 0.4 48 106-156 201-248 (259)
190 PF02761 Cbl_N2: CBL proto-onc 56.0 49 0.0011 20.8 7.2 47 73-119 22-68 (85)
191 PRK00523 hypothetical protein; 56.0 39 0.00084 20.4 4.3 42 133-177 27-68 (72)
192 TIGR01639 P_fal_TIGR01639 Plas 55.2 28 0.00062 20.2 3.6 31 72-102 8-38 (61)
193 PF03672 UPF0154: Uncharacteri 54.7 43 0.00093 19.8 4.3 34 142-177 27-60 (64)
194 PRK00523 hypothetical protein; 53.6 33 0.00071 20.8 3.7 32 71-102 37-68 (72)
195 KOG4301 Beta-dystrobrevin [Cyt 53.0 96 0.0021 25.0 7.1 139 54-199 53-218 (434)
196 KOG2301 Voltage-gated Ca2+ cha 52.1 18 0.00039 35.3 3.6 71 50-121 1410-1484(1592)
197 COG3763 Uncharacterized protei 51.7 41 0.00088 20.2 3.8 32 71-102 36-67 (71)
198 PF11829 DUF3349: Protein of u 50.9 50 0.0011 21.3 4.5 60 74-133 20-79 (96)
199 cd07177 terB_like tellurium re 49.8 57 0.0012 20.4 4.9 78 71-153 13-95 (104)
200 PLN02223 phosphoinositide phos 49.3 1.1E+02 0.0023 26.5 7.4 66 55-121 14-92 (537)
201 PRK01844 hypothetical protein; 49.0 56 0.0012 19.8 4.2 42 133-177 26-67 (72)
202 COG3763 Uncharacterized protei 49.0 58 0.0013 19.6 4.7 43 133-178 26-68 (71)
203 KOG1785 Tyrosine kinase negati 48.8 1.6E+02 0.0034 24.5 8.1 86 70-159 187-275 (563)
204 PF13623 SurA_N_2: SurA N-term 48.6 91 0.002 21.7 7.3 41 152-194 95-145 (145)
205 KOG4070 Putative signal transd 47.7 93 0.002 21.9 5.6 83 57-139 12-107 (180)
206 TIGR03573 WbuX N-acetyl sugar 47.6 46 0.001 26.8 4.9 43 144-194 300-342 (343)
207 cd08315 Death_TRAILR_DR4_DR5 D 47.3 74 0.0016 20.4 8.9 88 56-174 3-90 (96)
208 KOG4629 Predicted mechanosensi 46.8 48 0.001 29.6 5.2 57 130-195 404-460 (714)
209 TIGR01550 DOC_P1 death-on-curi 46.6 75 0.0016 21.3 5.1 53 141-196 68-121 (121)
210 PHA02105 hypothetical protein 46.6 50 0.0011 19.0 3.5 48 73-120 4-56 (68)
211 PF08461 HTH_12: Ribonuclease 45.4 35 0.00075 20.2 3.0 38 142-181 9-46 (66)
212 PF11116 DUF2624: Protein of u 44.4 79 0.0017 19.9 5.7 30 146-177 14-43 (85)
213 PF09412 XendoU: Endoribonucle 44.3 35 0.00076 26.5 3.6 124 54-192 61-186 (265)
214 PF07499 RuvA_C: RuvA, C-termi 44.2 53 0.0011 17.8 3.6 38 76-117 3-40 (47)
215 PF01885 PTS_2-RNA: RNA 2'-pho 43.7 56 0.0012 23.9 4.5 36 140-177 26-61 (186)
216 PF07308 DUF1456: Protein of u 41.9 76 0.0017 18.9 5.6 45 75-119 15-59 (68)
217 KOG0506 Glutaminase (contains 41.5 53 0.0012 27.8 4.4 60 134-195 90-157 (622)
218 PRK09430 djlA Dna-J like membr 40.8 41 0.00089 26.1 3.6 78 106-189 68-150 (267)
219 KOG0039 Ferric reductase, NADH 40.8 95 0.0021 27.6 6.1 79 74-158 4-89 (646)
220 PF09312 SurA_N: SurA N-termin 39.9 36 0.00079 22.6 2.8 39 157-199 61-99 (118)
221 PF03979 Sigma70_r1_1: Sigma-7 39.1 43 0.00094 20.6 2.9 32 143-178 18-49 (82)
222 PTZ00373 60S Acidic ribosomal 36.0 1.3E+02 0.0029 20.0 5.4 53 133-192 6-58 (112)
223 CHL00091 apcE phycobillisome l 36.0 1.2E+02 0.0025 27.9 5.8 83 106-202 304-392 (877)
224 PF09068 EF-hand_2: EF hand; 35.8 54 0.0012 22.3 3.2 23 97-119 101-123 (127)
225 KOG4286 Dystrophin-like protei 35.6 1.5E+02 0.0033 26.8 6.3 98 58-158 471-580 (966)
226 PHA03155 hypothetical protein; 35.3 1.4E+02 0.0029 19.9 5.1 95 73-170 7-101 (115)
227 KOG0506 Glutaminase (contains 35.2 1.1E+02 0.0024 26.0 5.3 60 61-120 90-157 (622)
228 PF09373 PMBR: Pseudomurein-bi 34.8 40 0.00087 16.8 1.8 13 183-195 3-15 (33)
229 PF05872 DUF853: Bacterial pro 34.4 2.5E+02 0.0055 24.0 7.2 95 51-156 122-225 (502)
230 PRK00819 RNA 2'-phosphotransfe 34.3 1E+02 0.0022 22.4 4.6 37 67-103 27-63 (179)
231 PRK00819 RNA 2'-phosphotransfe 33.9 1E+02 0.0023 22.3 4.5 17 104-120 28-44 (179)
232 PF13624 SurA_N_3: SurA N-term 33.9 58 0.0013 22.4 3.2 46 153-200 90-136 (154)
233 cd06404 PB1_aPKC PB1 domain is 33.3 1.2E+02 0.0027 18.9 4.4 16 130-145 59-74 (83)
234 PF14178 YppF: YppF-like prote 32.6 1.1E+02 0.0023 17.9 4.6 27 166-194 20-46 (60)
235 PF09336 Vps4_C: Vps4 C termin 32.2 55 0.0012 19.1 2.4 25 73-97 29-53 (62)
236 PF01885 PTS_2-RNA: RNA 2'-pho 32.1 91 0.002 22.7 4.0 37 67-103 26-62 (186)
237 PF12631 GTPase_Cys_C: Catalyt 31.9 1E+02 0.0022 18.5 3.6 42 61-102 27-72 (73)
238 cd00171 Sec7 Sec7 domain; Doma 31.3 2.1E+02 0.0045 20.8 10.2 39 139-177 142-180 (185)
239 TIGR02675 tape_meas_nterm tape 31.1 69 0.0015 19.4 2.8 16 70-85 27-42 (75)
240 PRK08181 transposase; Validate 31.0 2.6E+02 0.0055 21.8 7.3 82 71-155 4-96 (269)
241 cd08316 Death_FAS_TNFRSF6 Deat 30.8 1.5E+02 0.0033 19.1 7.6 77 73-175 17-93 (97)
242 cd02977 ArsC_family Arsenate R 30.1 1.5E+02 0.0033 18.9 4.8 60 136-199 26-88 (105)
243 cd03035 ArsC_Yffb Arsenate Red 29.5 48 0.0011 21.5 2.1 50 145-199 34-86 (105)
244 PF12419 DUF3670: SNF2 Helicas 29.3 1.2E+02 0.0027 20.8 4.2 49 70-118 80-138 (141)
245 PF04876 Tenui_NCP: Tenuivirus 28.8 2.1E+02 0.0046 20.1 7.3 58 92-158 82-139 (175)
246 KOG2301 Voltage-gated Ca2+ cha 28.4 42 0.00091 33.0 2.2 72 128-199 1415-1487(1592)
247 cd05833 Ribosomal_P2 Ribosomal 28.3 1.8E+02 0.0039 19.2 5.3 56 134-196 5-60 (109)
248 TIGR03849 arch_ComA phosphosul 27.5 2.3E+02 0.005 21.7 5.5 49 70-118 167-222 (237)
249 PF07166 DUF1398: Protein of u 26.0 51 0.0011 22.4 1.7 21 180-200 79-99 (125)
250 PRK10026 arsenate reductase; P 25.7 67 0.0014 22.3 2.3 51 145-199 37-90 (141)
251 PF02885 Glycos_trans_3N: Glyc 25.4 1.5E+02 0.0032 17.2 5.7 11 90-100 15-25 (66)
252 PF08044 DUF1707: Domain of un 25.4 1.3E+02 0.0028 16.9 3.0 30 70-99 20-49 (53)
253 smart00222 Sec7 Sec7 domain. D 24.3 2.8E+02 0.0061 20.1 10.2 38 140-177 145-182 (187)
254 COG2036 HHT1 Histones H3 and H 23.7 2.1E+02 0.0045 18.3 5.9 30 133-162 58-87 (91)
255 cd00086 homeodomain Homeodomai 23.5 1.4E+02 0.003 16.3 5.3 43 51-100 7-49 (59)
256 PF03683 UPF0175: Uncharacteri 23.1 1.7E+02 0.0036 17.7 3.5 22 148-169 47-68 (76)
257 KOG0869 CCAAT-binding factor, 23.0 1.9E+02 0.0041 20.5 4.0 39 113-163 65-103 (168)
258 PRK03095 prsA peptidylprolyl i 22.4 1.8E+02 0.0039 22.8 4.4 18 106-123 31-48 (287)
259 COG1460 Uncharacterized protei 22.4 1.4E+02 0.0031 19.9 3.2 28 148-177 81-108 (114)
260 KOG3077 Uncharacterized conser 22.4 3.8E+02 0.0082 20.9 9.0 74 88-162 59-133 (260)
261 PF11867 DUF3387: Domain of un 22.3 4.1E+02 0.009 21.3 8.3 57 61-119 105-164 (335)
262 PF10281 Ish1: Putative stress 22.3 1.3E+02 0.0028 15.4 3.9 30 166-195 5-35 (38)
263 COG2818 Tag 3-methyladenine DN 22.2 3.2E+02 0.007 20.0 6.9 35 55-89 53-87 (188)
264 COG5069 SAC6 Ca2+-binding acti 21.9 2.3E+02 0.005 24.3 4.9 80 61-145 489-569 (612)
265 cd08330 CARD_ASC_NALP1 Caspase 21.7 2.1E+02 0.0045 17.6 4.0 47 143-196 26-72 (82)
266 PF08671 SinI: Anti-repressor 21.6 1.2E+02 0.0026 14.9 2.5 11 185-195 17-27 (30)
267 PF09107 SelB-wing_3: Elongati 20.7 1.7E+02 0.0037 16.2 3.1 32 143-181 7-38 (50)
268 KOG3274 Uncharacterized conser 20.6 2.1E+02 0.0045 21.1 3.9 52 150-202 157-209 (210)
269 PF11363 DUF3164: Protein of u 20.5 3.6E+02 0.0078 19.9 6.0 18 100-117 126-143 (195)
270 TIGR00135 gatC glutamyl-tRNA(G 20.5 1.9E+02 0.0041 18.1 3.5 26 147-174 1-26 (93)
271 PF00690 Cation_ATPase_N: Cati 20.5 1.9E+02 0.0042 16.8 3.6 32 132-163 6-37 (69)
272 PF02337 Gag_p10: Retroviral G 20.4 1.7E+02 0.0038 18.6 3.2 11 166-176 26-36 (90)
273 cd00171 Sec7 Sec7 domain; Doma 20.0 2.3E+02 0.0051 20.5 4.3 33 107-139 147-180 (185)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=5.7e-29 Score=172.71 Aligned_cols=151 Identities=36% Similarity=0.648 Sum_probs=142.4
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 028812 45 SNTNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIME 124 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 124 (203)
......++..+.++++++|..+|++++|.|+..+|..+++.+|..++..++.++++.+|. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 334456778888999999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 125 EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 125 ~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
....+++++.+|+.||.|++|+|+..+++.+++.+|... ++++++.+++.+|.|++|.|+|++|++.+...+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~--~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL--SDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC--CHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 888899999999999999999999999999999999998 999999999999999999999999999887654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-27 Score=165.53 Aligned_cols=145 Identities=50% Similarity=0.820 Sum_probs=134.8
Q ss_pred CCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh--
Q 028812 51 RSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE-- 128 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-- 128 (203)
.+..+..+++++|..+|.+++|.|+..|+..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 345677899999999999999999999999999999999999999999999999999999999999999877655443
Q ss_pred --HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 129 --EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 129 --~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
.+.++.+|+.||.|++|+||.+||+.++..+|.+. +.+++..+++.+|.|+||.|+|++|+++|...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 45999999999999999999999999999999998 89999999999999999999999999998754
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.5e-24 Score=146.40 Aligned_cols=147 Identities=30% Similarity=0.520 Sum_probs=140.5
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh
Q 028812 49 PTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE 128 (203)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 128 (203)
+.+++.+..+++..|..+|.+++|+|+..||.-+++.+|..+..+++..++..+|+++.|.|+|++|...+...+.....
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 44666777999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
.+.+..+|+.+|.|++|.|+..+|+.+.+.+|..+ +++++..|+..+|.|++|.|+-++|..+|++.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl--tD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL--TDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc--cHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999999999999999998 99999999999999999999999999999875
No 4
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=3.9e-24 Score=152.20 Aligned_cols=149 Identities=33% Similarity=0.569 Sum_probs=136.7
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh
Q 028812 49 PTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE 128 (203)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 128 (203)
+..++.+.++++.+|..+|.+++|.|+.+||..+++.+|...+...+..++..+|.+++|.|+++||+..+.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 44677888999999999999999999999999999999988888999999999999999999999999988766555556
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
...+..+|+.+|.+++|.|+.+||..++..+|... +.+++..++..+|.+++|.|++++|..++...++
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETI--TDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 67899999999999999999999999999998776 9999999999999999999999999999988654
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=3.6e-23 Score=145.67 Aligned_cols=144 Identities=42% Similarity=0.747 Sum_probs=131.5
Q ss_pred CCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHH
Q 028812 51 RSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEE 130 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 130 (203)
++..+.+.++..|..+|.+++|.|+.+||..++..++..+..+.+..++..+|.+++|.|++++|+.++...........
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~ 84 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEE 84 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHH
Confidence 45667888999999999999999999999999999988888899999999999999999999999999876654445667
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 131 DMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 131 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
.+..+|+.+|.+++|.|+.+|+..++...|... +..++..+++.+|.+++|.|+|+||+.++..
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL--TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC--CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 899999999999999999999999999998776 8999999999999999999999999998864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=1.3e-21 Score=132.24 Aligned_cols=146 Identities=29% Similarity=0.482 Sum_probs=136.6
Q ss_pred CCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc
Q 028812 47 TNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK 126 (203)
Q Consensus 47 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 126 (203)
....+++.++.+++++|..+|+|++|.|+.++++..+..+|..++.++++.++... .|.|+|--|+.++...+...
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC
Confidence 33557777899999999999999999999999999999999999999999999865 89999999999999999999
Q ss_pred ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 127 DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 127 ~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
..++.+..+|+.||.+++|.|..+.++++|...|... +++|++.+++.+-.|..|.|+|..|+.++..+.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--TDEEVDEMYREAPIDKKGNFDYKAFTYIITHGE 167 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC--CHHHHHHHHHhCCcccCCceeHHHHHHHHHccc
Confidence 8999999999999999999999999999999999988 999999999999999999999999999998543
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-21 Score=138.06 Aligned_cols=132 Identities=29% Similarity=0.426 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGI-YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMK 133 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~-~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (203)
.-.++...|...|+++.|.|+.+|++.+|..... ....+.++.++..+|.+.+|+|+++||..+|..+ ..++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 4568999999999999999999999999997644 5688899999999999999999999999999988 8999
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 134 EAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
.+|+.||.|++|.|+..||+.+|..+|+.+ +++-++.+++.+|..+.|.|.+++|++++.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 999999999999999999999999999998 999999999999988899999999999875
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=4.7e-20 Score=122.72 Aligned_cols=142 Identities=30% Similarity=0.527 Sum_probs=127.4
Q ss_pred CccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC--CCCceeHHHHHHHHHHHhcccC--
Q 028812 52 STMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVN--GDGCVDIDEFGALYKSIMEEKD-- 127 (203)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~-- 127 (203)
++.+..+++++|..||..++|+|+..+.-.+|+.+|.+++..++.+....++.+ +-.+++|++|+-++..+...+.
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 445669999999999999999999999999999999999999999999999877 5689999999999988765543
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
.-+.+..-++.||++++|.|...|++.+|.++|... +++|++.++... .|++|.|+|+.|+..+..
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl--~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL--TEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc--cHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 356788889999999999999999999999999998 999999999977 588899999999987643
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.84 E-value=9.7e-20 Score=130.94 Aligned_cols=147 Identities=22% Similarity=0.376 Sum_probs=124.6
Q ss_pred CCccCHHHHHHHHHHcCCCC-CCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh
Q 028812 51 RSTMDQAELDRVFQMFDHNG-DGRISKKELNDSLENLGI-YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE 128 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~-~g~i~~~ef~~~l~~l~~-~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 128 (203)
.+..+.++++.+++.|-.+. +|.++.++|+.++..+.. .-+...+..+|+.+|.|++|.|++.||+..++.. .+...
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~ 98 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTL 98 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcH
Confidence 45668899999999998886 999999999999999876 4456678899999999999999999999999665 55567
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhc----CC-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSL----GL-----KQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~~-----~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
++.+..+|+.||.|++|+|+++|+..++..+ |. ......+.+..+|+.+|.|+||.||++||...+.+..
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 8889999999999999999999999988775 32 1111345688999999999999999999999887654
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.83 E-value=7.1e-20 Score=131.59 Aligned_cols=144 Identities=31% Similarity=0.519 Sum_probs=120.7
Q ss_pred CCccCHHHHHHHHHHcCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCc-eeHHHHHHHHHHHhcccCh
Q 028812 51 RSTMDQAELDRVFQMFDHN-GDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGC-VDIDEFGALYKSIMEEKDE 128 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~-~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~ 128 (203)
++..+...+...|..+|.+ ++|.|+.+||..+.. +.. .....+|+..++.+++|. |++++|+..+.........
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~---Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LAL---NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-Hhc---CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 5566778888889999999 999999999999983 322 235678888999888888 9999999999988877777
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCC-CCCCCHH----HHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGL-KQGRTVE----DCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~-~~~~~~~----~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
+++++.+|+.||.+++|+|+.+|+..++..+.. ....+++ .++.++.++|.|+||+|+++||++++.+.+
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 889999999999999999999999999988733 3311133 356678999999999999999999998874
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.75 E-value=7.2e-17 Score=125.46 Aligned_cols=140 Identities=23% Similarity=0.353 Sum_probs=127.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChH
Q 028812 51 RSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIY-IPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEE 129 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~-~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 129 (203)
..++-...+..+|..+|.+++|.|+..++.+.+..+..+ +..+.+..+++.+|.|.+|.++|+||..++... +
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------E 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------H
Confidence 344556778899999999999999999999999999766 777889999999999999999999999998653 5
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
.++..+|+..|.++||.|+.+|+.+.|+.+|..+ ++++..++++.+|.++.+.|+++||.+++.-.+
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL--SDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc--CHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 7889999999999999999999999999999998 999999999999999999999999999887554
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.6e-14 Score=108.38 Aligned_cols=134 Identities=25% Similarity=0.374 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChH----HH
Q 028812 57 AELDRVFQMFDHNGDGRISKKELNDSLENLGI-YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEE----ED 131 (203)
Q Consensus 57 ~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~-~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~----~~ 131 (203)
..=++.|+..|.|++|.++.+||..+|..-.. ....-.+..-+.-.|+|++|.|+++||+.-+.......... ..
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 33456799999999999999999999886532 33455677788889999999999999998776554322222 23
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQ 192 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 192 (203)
-.+.+..+|.|+||+++.+|++..+.--+... ...+.+-++...|.|+||++|++|.+.
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~--A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDH--AKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccH--HHHHHHHHhhhhccCccccccHHHHhh
Confidence 35677789999999999999998887777666 788999999999999999999999765
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.53 E-value=1.8e-13 Score=114.91 Aligned_cols=121 Identities=22% Similarity=0.339 Sum_probs=102.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLG-IYIPDVE---LTQMIERIDVNGDGCVDIDEFGALYKSIMEE 125 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~-~~~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 125 (203)
.++..+.++++++|..+|+|++|.+ +..+++.+| ..++.++ ++.+|..+|.|++|.|+++||+.++... ..
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GN 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-cc
Confidence 4455678899999999999999997 888899999 5777776 8999999999999999999999999864 44
Q ss_pred cChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh-------------cCCCCCCCH-HHHHHHHHhh
Q 028812 126 KDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS-------------LGLKQGRTV-EDCKRMIMKV 177 (203)
Q Consensus 126 ~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-------------~~~~~~~~~-~~~~~~~~~~ 177 (203)
...++++..+|+.+|.|++|+|+.+||++++.. +|..+ +. +++..|++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l--~~~~~~~~iiH~~ 274 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEAL--GVSDKLNAMIHMT 274 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcc--cchhhHHHHHHHH
Confidence 556788999999999999999999999999988 56554 44 5666776543
No 14
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.51 E-value=4.2e-13 Score=90.44 Aligned_cols=146 Identities=21% Similarity=0.361 Sum_probs=108.2
Q ss_pred CCCCCccCHHHHHHHHHHc---CCC-----------CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHH
Q 028812 48 NPTRSTMDQAELDRVFQMF---DHN-----------GDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDID 113 (203)
Q Consensus 48 ~~~~~~~~~~~~~~~F~~~---D~~-----------~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ 113 (203)
++.++-..++++-++++.+ .++ ..-.++.+.+.++- .+.-++- -++|.+.|..|+.|.++++
T Consensus 16 YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELkenpf---k~ri~e~FSeDG~Gnlsfd 91 (189)
T KOG0038|consen 16 YQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELKENPF---KRRICEVFSEDGRGNLSFD 91 (189)
T ss_pred hcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhhcChH---HHHHHHHhccCCCCcccHH
Confidence 3445555667777665544 221 12345555544332 2222222 3456667778999999999
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHH----HHHHHhhCCCCCCceeHHH
Q 028812 114 EFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDC----KRMIMKVDVDGDGMVDYKE 189 (203)
Q Consensus 114 ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~----~~~~~~~d~~~dg~i~~~e 189 (203)
+|+.+++........+-++..+|+.||-|+|++|..+++...+..+.... ++++|+ ++++.++|.|+||++++.|
T Consensus 92 dFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e-Ls~eEv~~i~ekvieEAD~DgDgkl~~~e 170 (189)
T KOG0038|consen 92 DFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE-LSDEEVELICEKVIEEADLDGDGKLSFAE 170 (189)
T ss_pred HHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCcccHHH
Confidence 99999988877777788899999999999999999999999999885543 477664 5678889999999999999
Q ss_pred HHHHHHcCC
Q 028812 190 FKQMMKGGG 198 (203)
Q Consensus 190 F~~~l~~~~ 198 (203)
|..++.+++
T Consensus 171 Fe~~i~raP 179 (189)
T KOG0038|consen 171 FEHVILRAP 179 (189)
T ss_pred HHHHHHhCc
Confidence 999998775
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-13 Score=98.53 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccC--------
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKD-------- 127 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-------- 127 (203)
..-...+|+.+|.|++|.|++.||..++.........+.+...|+.||.|++|.|+++|++.++..++....
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 344567899999999999999999999998877777888999999999999999999999999877653332
Q ss_pred --hHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 128 --EEEDMKEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 128 --~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
.++.+..+|+.+|.|+||.||.+||.+.+.+
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4678899999999999999999999998863
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=1.8e-12 Score=91.43 Aligned_cols=108 Identities=29% Similarity=0.558 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCC---CHH
Q 028812 92 DVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGR---TVE 168 (203)
Q Consensus 92 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~---~~~ 168 (203)
..++..+|..+|.+++|.|+-.|+..++..+ ........+..++..+|.+++|.|+.+||..++...+..... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 4578899999999999999999999999776 444678899999999999999999999999999988665421 356
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHcCCCC
Q 028812 169 DCKRMIMKVDVDGDGMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 169 ~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 200 (203)
++.+.|+.+|.|++|.|+..|+..+|..-|-+
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 99999999999999999999999999887654
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=9.5e-13 Score=79.67 Aligned_cols=64 Identities=38% Similarity=0.701 Sum_probs=54.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC--CCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 131 DMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ--GRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 131 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+++.+|+.+|.|++|+|+.+||+.++..++... ...++.+..+|+.+|.|++|.|+++||.++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999999998654 0123455666999999999999999999875
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.43 E-value=5.8e-12 Score=87.94 Aligned_cols=103 Identities=23% Similarity=0.442 Sum_probs=92.5
Q ss_pred cCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHH
Q 028812 54 MDQAELDRVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDM 132 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 132 (203)
.+.+.+.++|..+|. +++.|++.+|..+|... ....+.+++.+.|+.||.|++|+|+..++..++... .....++.+
T Consensus 53 ~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev 130 (160)
T COG5126 53 PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEV 130 (160)
T ss_pred CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHH
Confidence 366889999999999 99999999999999876 456678999999999999999999999999999754 666678999
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
..+++.+|.|++|.|+.++|.+.+..
T Consensus 131 ~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 131 EKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999988753
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=7.5e-13 Score=84.24 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=60.5
Q ss_pred HHHHHHHHhhCC-CCCCceeHHHHHHHHHh-cCCCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 130 EDMKEAFNVFDQ-NGDGFITFDELKSVLGS-LGLKQGRTV-EDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 130 ~~~~~~F~~~D~-~~~G~Is~~e~~~~l~~-~~~~~~~~~-~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
..+..+|+.||. +++|+|+..||+.++.. +|..+ ++ ++++.+++.+|.|+||.|+|+||+.++.+-
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l--s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL--KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999 99999999999999999 88666 77 899999999999999999999999988653
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-11 Score=97.64 Aligned_cols=138 Identities=21% Similarity=0.412 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh--cc-c-----
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIM--EE-K----- 126 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~--~~-~----- 126 (203)
..++...|+.+|...+|+|+...+..++... +.+++=..+.- .....+.+|.+.|.+....+..-. .+ .
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 4567788999999999999999999999875 55555332222 223456688999988876653211 00 0
Q ss_pred ---ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcC--CCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 127 ---DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLG--LKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 127 ---~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
.+...+..+|+.+|.|++|.||.+||+.+++-++ ++..++++++.++.+.+|.|+||.|++.||+++++
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 1245678899999999999999999999998763 34455999999999999999999999999999886
No 21
>PTZ00183 centrin; Provisional
Probab=99.39 E-value=1.2e-11 Score=87.74 Aligned_cols=104 Identities=23% Similarity=0.410 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc-CCCCCCCHHHHH
Q 028812 93 VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL-GLKQGRTVEDCK 171 (203)
Q Consensus 93 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-~~~~~~~~~~~~ 171 (203)
.++..+|..+|.+++|.|+++||..++... ........+..+|..+|.+++|.|+.+||..++... .... ..+.+.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~ 93 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD--PREEIL 93 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC--cHHHHH
Confidence 467788999999999999999999998765 333456789999999999999999999999987654 2222 678899
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 172 RMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 172 ~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
.+|+.+|.+++|.|+.+||..++...+.
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~ 121 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGE 121 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 9999999999999999999999986654
No 22
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.5e-13 Score=105.25 Aligned_cols=98 Identities=27% Similarity=0.479 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHh------CCC----CC-----HHHHH--HHHHhcCCCCCCceeHHHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENL------GIY----IP-----DVELT--QMIERIDVNGDGCVDIDEFGAL 118 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l------~~~----~~-----~~~~~--~i~~~~d~~~~g~i~~~ef~~~ 118 (203)
.+.+..+|+++|.|+||.|+.+||..+..-. +.. .+ ..+++ -+...|+++++++++++||..+
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 3567789999999999999999999887532 220 00 11111 1334578999999999999999
Q ss_pred HHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 119 YKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 119 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
...+ +.+.++-.|..+|...+|.|+..+|..++..
T Consensus 312 ~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 312 QENL-----QEEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred HHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 8877 4466666777777777777777777766644
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.37 E-value=8.5e-12 Score=89.99 Aligned_cols=130 Identities=20% Similarity=0.313 Sum_probs=111.9
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChH
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEE 129 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 129 (203)
.-+....+.++-+-..+|.+++|+|..+||+.+-+.+ ...+.+|..+|.|++|+|+..|+..++... .-....
T Consensus 87 ~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lsp 159 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSP 159 (221)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCH
Confidence 3445679999999999999999999999999988744 567899999999999999999999999765 444567
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCC--ceeHHHHHHHH
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDG--MVDYKEFKQMM 194 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg--~i~~~eF~~~l 194 (203)
+-...+.+.||..++|.|..++|.+.|..+ .-+.+.|+..|.+.+| .|+|++|+.+.
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------QRLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHHHHH--------HHHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 888999999998889999999999999888 3467889999999988 46799998764
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=3.6e-12 Score=77.10 Aligned_cols=62 Identities=39% Similarity=0.690 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCH----HHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 58 ELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPD----VELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 58 ~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~----~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
.++++|+.+|.|++|.|+.+||..++..++...+. +.+..+|..+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999998865544 345555888888888888888887653
No 25
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.4e-11 Score=93.76 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc------ccCh
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIME------EKDE 128 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~------~~~~ 128 (203)
+.+.+..++..+|.+++|.|+..|++.++.......-..+..+-+..+|.|.+|.|+++|+......... ....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 5788899999999999999999999999886654445567778888999999999999999887653210 0000
Q ss_pred -------HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 129 -------EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 129 -------~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
...-..-|+.-|.|++|.++++||..++--.-.+. ..+=.+..-+...|.|+||.|+++||+.=|-
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~-M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPH-MKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcch-HHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 12335569999999999999999999985443221 1233467778889999999999999998654
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.33 E-value=7.7e-12 Score=79.62 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFDH-NGDGRISKKELNDSLEN-LGIYIPD-VELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D~-~~~g~i~~~ef~~~l~~-l~~~~~~-~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+..+|+.||. +++|.|+.+||+.++.. ++...+. ++++.++..+|.|++|.|+|+||+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4678899999999 99999999999999999 8876777 899999999999999999999999988765
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.33 E-value=4.5e-11 Score=83.79 Aligned_cols=106 Identities=24% Similarity=0.470 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHH
Q 028812 93 VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKR 172 (203)
Q Consensus 93 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~ 172 (203)
..+...|..+|.+++|.|+++||..++... ......+.+..+|..+|.+++|.|+.++|..++....... .....+..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~~~ 88 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-DSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC-cHHHHHHH
Confidence 456778899999999999999999988654 3334567899999999999999999999999887653211 14567899
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHcCCCC
Q 028812 173 MIMKVDVDGDGMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 173 ~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 200 (203)
+|+.+|.+++|.|+.++|..++...++.
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~ 116 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEK 116 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCC
Confidence 9999999999999999999999876543
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=1.6e-11 Score=78.19 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=60.5
Q ss_pred HHHHHHHHhhC-CCCCC-ceeHHHHHHHHHh-----cCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 130 EDMKEAFNVFD-QNGDG-FITFDELKSVLGS-----LGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 130 ~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
..+..+|+.|| .+++| +|+.+||+.+++. +|... +++++..+++.+|.|++|+|+|++|+.++....
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 56789999998 79999 5999999999999 78776 889999999999999999999999999886543
No 29
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=3.6e-11 Score=76.59 Aligned_cols=67 Identities=28% Similarity=0.495 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFD-HNGDG-RISKKELNDSLEN-----LGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D-~~~~g-~i~~~ef~~~l~~-----l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+.++|+.+| .+++| .|+.+||+.+|+. ++...+.+++..+++.+|.|++|.|+|+||+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467889999998 79999 5999999999999 8888899999999999999999999999999988665
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.27 E-value=7.9e-11 Score=84.97 Aligned_cols=101 Identities=26% Similarity=0.485 Sum_probs=86.8
Q ss_pred HHHHHHHcCCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh------HH
Q 028812 59 LDRVFQMFDHNGDGR-ISKKELNDSLENLGIYIPDV-ELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE------EE 130 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~-i~~~ef~~~l~~l~~~~~~~-~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~~ 130 (203)
..+++..++.+++|. |++++|...+..+....... .++-.|+.||.+++|.|+.+|+..++......... ..
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 357789999999888 99999999999886655554 89999999999999999999999999887764333 35
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 131 DMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 131 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
.+..+|..+|.|+||+|+.+||.+++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 67888999999999999999999998754
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.25 E-value=5e-11 Score=75.94 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=58.7
Q ss_pred HHHHHHHHhhCC-CC-CCceeHHHHHHHHHh---cCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 130 EDMKEAFNVFDQ-NG-DGFITFDELKSVLGS---LGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 130 ~~~~~~F~~~D~-~~-~G~Is~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
..+..+|+.||. ++ +|+|+.+||+.++.. +|... +++++.++++.+|.|++|+|+|+||+.++.+-
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457789999998 67 899999999999974 57766 99999999999999999999999999988754
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=3.3e-11 Score=78.07 Aligned_cols=68 Identities=21% Similarity=0.429 Sum_probs=59.5
Q ss_pred HHHHHHHHhhCC-CC-CCceeHHHHHHHHHh-----cCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 130 EDMKEAFNVFDQ-NG-DGFITFDELKSVLGS-----LGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 130 ~~~~~~F~~~D~-~~-~G~Is~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
..++.+|..||. |+ +|+|+.+|++.++.. +|... +.+++..++..+|.+++|.|+|++|+.++...++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~--s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK--DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc--cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 568889999997 87 699999999999986 35554 8899999999999999999999999999876554
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.21 E-value=9e-11 Score=75.74 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=55.8
Q ss_pred HHHHHHHHhhC-CCCCC-ceeHHHHHHHHHhc-CC--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 130 EDMKEAFNVFD-QNGDG-FITFDELKSVLGSL-GL--KQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 130 ~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~~-~~--~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
..+..+|+.|| .|++| +|+..||+.++... +. ....++.++.++++.+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 56788899999 78998 59999999999763 21 11127789999999999999999999999998864
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.21 E-value=9.9e-11 Score=67.78 Aligned_cols=52 Identities=38% Similarity=0.700 Sum_probs=48.5
Q ss_pred CCCceeHHHHHHHHHhcCCC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 143 GDGFITFDELKSVLGSLGLK-QGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 143 ~~G~Is~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
++|.|+.++|+.++..+|.. . +++++..++..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~--s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL--SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS--CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC--CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 7 9999999999999999999999999999864
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=1e-10 Score=76.12 Aligned_cols=71 Identities=28% Similarity=0.491 Sum_probs=64.3
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
..+..+.+.++++|..+|.+++|.|+.+|++.+++..+ .+.+++..++..+|.+++|.|+++||+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 35667889999999999999999999999999999875 578899999999999999999999999988765
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.19 E-value=1.6e-10 Score=74.60 Aligned_cols=67 Identities=25% Similarity=0.502 Sum_probs=57.8
Q ss_pred HHHHHHHHhhC-CCCCC-ceeHHHHHHHHHh-cCCC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 130 EDMKEAFNVFD-QNGDG-FITFDELKSVLGS-LGLK--QGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 130 ~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-~~~~--~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
+.++.+|+.|| .+++| .|+.+|++.+++. +|.. ...+.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 67899999997 99999 5999999999986 5432 1237899999999999999999999999998864
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=4e-10 Score=77.45 Aligned_cols=103 Identities=24% Similarity=0.438 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh-cCCCCCCCHHHHH
Q 028812 93 VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS-LGLKQGRTVEDCK 171 (203)
Q Consensus 93 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-~~~~~~~~~~~~~ 171 (203)
.++...|..||.+++|+|+++|+...+..+ ......+.+.++..-+|.++.|.|+.++|+..+.. ++... +.+++.
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d--t~eEi~ 109 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD--TKEEIK 109 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC--cHHHHH
Confidence 568889999999999999999997776554 34446678888999999999999999999999755 46655 899999
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 172 RMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 172 ~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
.+|+.+|.|++|+|++.+|+.+..+-|
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhC
Confidence 999999999999999999999887654
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=99.17 E-value=3.7e-10 Score=95.18 Aligned_cols=126 Identities=20% Similarity=0.333 Sum_probs=93.7
Q ss_pred HHHcCCCCCCcccHHHHHHHHHH--h-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHH---HHHHHH
Q 028812 63 FQMFDHNGDGRISKKELNDSLEN--L-GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEE---DMKEAF 136 (203)
Q Consensus 63 F~~~D~~~~g~i~~~ef~~~l~~--l-~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~---~~~~~F 136 (203)
|..+|.+ .++.+++...... . ......+++.+.|..+|.|++|.+ +..++..+......+. .++.+|
T Consensus 113 ~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf 185 (644)
T PLN02964 113 ISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRIL 185 (644)
T ss_pred EEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4444543 4677777655543 1 111233667888999999999997 3333333321122333 389999
Q ss_pred HhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 137 NVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 137 ~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
..+|.|++|.|+.+||..++..++... +++++..+|+.+|.|++|.|+++||..+|...
T Consensus 186 ~~~D~DgdG~IdfdEFl~lL~~lg~~~--seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 186 AIVDYDEDGQLSFSEFSDLIKAFGNLV--AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHhCCCCCCeEcHHHHHHHHHHhccCC--CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999999988655 88999999999999999999999999999874
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.15 E-value=2.9e-10 Score=73.35 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcC-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFD-HNGDG-RISKKELNDSLENL-----GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D-~~~~g-~i~~~ef~~~l~~l-----~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+.++|+.|| .|++| .|+.+||+.++... ....+..++..+++.+|.|++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 467788899999 78998 59999999999763 334577899999999999999999999999998765
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.14 E-value=3.6e-10 Score=72.89 Aligned_cols=67 Identities=34% Similarity=0.536 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFD-HNGDG-RISKKELNDSLEN-LG----IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D-~~~~g-~i~~~ef~~~l~~-l~----~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+.++|..+| .+++| .|+..||+.+++. +| ..++.+++..++..+|.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 44 34688999999999999999999999999988765
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=3.2e-10 Score=73.41 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFDH-NG-DGRISKKELNDSLEN-----LGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D~-~~-~g~i~~~ef~~~l~~-----l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+..+|..+|. |+ +|.|+.+|++.++.. ++..++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678899999997 87 799999999999986 4667788999999999999999999999999888654
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=3e-10 Score=68.69 Aligned_cols=60 Identities=33% Similarity=0.494 Sum_probs=54.9
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
+.+|+.+|.+++|.|+.+|+..++...|. +.+++..++..+|.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999998864 6789999999999999999999999998864
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=2.8e-10 Score=68.86 Aligned_cols=61 Identities=34% Similarity=0.552 Sum_probs=56.1
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 60 DRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 60 ~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
+++|..+|++++|.|+.+|++.++..++. +.+++..++..+|.+++|.|+++||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998875 78899999999999999999999999988655
No 44
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.13 E-value=6.1e-10 Score=88.53 Aligned_cols=136 Identities=18% Similarity=0.308 Sum_probs=107.0
Q ss_pred CHHHHHHH---HHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc----CCCCCCceeHHHHHHHHHHHhcccC
Q 028812 55 DQAELDRV---FQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERI----DVNGDGCVDIDEFGALYKSIMEEKD 127 (203)
Q Consensus 55 ~~~~~~~~---F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~ 127 (203)
+.+....+ |..+|+|++|.|+.+++...-. ...+...+++||+.+ -.-.+|+++|++|+.++... ..+.
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~ 348 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKD 348 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCC
Confidence 34445555 8889999999999999987654 234577899999933 34468999999999988665 5566
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc-------CCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSL-------GLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
....+..+|+.+|.+++|.|+..|++-+.... |.....-++.+.+++..+-+...++|+..+|...=
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~sk 422 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGSK 422 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhcc
Confidence 77889999999999999999999988877553 33322346778889998888889999999998843
No 45
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.13 E-value=4.5e-10 Score=71.57 Aligned_cols=67 Identities=25% Similarity=0.506 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFDH-NG-DGRISKKELNDSLEN---LGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D~-~~-~g~i~~~ef~~~l~~---l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+-.+|..||. ++ +|.|+.+||+.++.. +|...+.+++.++++.+|.|++|.|+|+||+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567788999998 67 899999999999973 6888899999999999999999999999999988665
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.13 E-value=5e-10 Score=72.82 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
...+..+|..+|.+++|.|+.+|++.+++..| . +.+++..++..+|.+++|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~--~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--L--PQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--C--CHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 46788999999999999999999999999865 3 778999999999999999999999998775
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.13 E-value=1.6e-09 Score=85.10 Aligned_cols=129 Identities=21% Similarity=0.347 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKE 134 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (203)
..+..+.+|...|.|.+|.++.+||+..+. ..+.++-++|..+|.+.||.|+.+|....+... ...-+.+++.+
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k 122 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAK 122 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHH
Confidence 346678899999999999999999999987 356688899999999999999999999988765 44457788899
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHh------hCCCCCCceeHHHHHHHHHc
Q 028812 135 AFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMK------VDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 135 ~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~------~d~~~dg~i~~~eF~~~l~~ 196 (203)
+|+..|+++++.|+.+|+++.+.-. +++.+..++.. +|...+..|. ++|...-+.
T Consensus 123 ~~e~~d~~g~~~I~~~e~rd~~ll~------p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~ 183 (463)
T KOG0036|consen 123 FFEHMDKDGKATIDLEEWRDHLLLY------PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLEND 183 (463)
T ss_pred HHHHhccCCCeeeccHHHHhhhhcC------ChhHHHHHHHhhhhheEEEccccccCC-cchHHHHhc
Confidence 9999999999999999999998755 35556666444 3777777777 666655443
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=3.8e-10 Score=72.21 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCC--CCCCceeHHHHHHHHHh-cCCCC--CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 129 EEDMKEAFNVFDQ--NGDGFITFDELKSVLGS-LGLKQ--GRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 129 ~~~~~~~F~~~D~--~~~G~Is~~e~~~~l~~-~~~~~--~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
.+.++.+|..||. +++|.|+.+|+..++.. +|... ..+.+++..++..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3568889999999 89999999999999986 45332 13589999999999999999999999999887643
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=3.4e-10 Score=72.41 Aligned_cols=69 Identities=29% Similarity=0.440 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHcCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 54 MDQAELDRVFQMFDH--NGDGRISKKELNDSLEN-LGIY----IPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~--~~~g~i~~~ef~~~l~~-l~~~----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
.+.+.++.+|..+|. +++|.|+.+||..+++. ++.. .+..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456789999999999 89999999999999986 4543 358899999999999999999999999988654
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.09 E-value=5.4e-10 Score=64.66 Aligned_cols=52 Identities=31% Similarity=0.691 Sum_probs=48.2
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 70 GDGRISKKELNDSLENLGIY-IPDVELTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~~-~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
.+|.|+.++|+.++..+|.. ++.+++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888998 99999999999999999999999999998753
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=1e-09 Score=64.76 Aligned_cols=61 Identities=49% Similarity=0.843 Sum_probs=56.5
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+..+|..+|.+++|.|+.+|+..++...+... +.+++..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL--SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999998777 88999999999999999999999999876
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.07 E-value=9.5e-10 Score=70.18 Aligned_cols=68 Identities=25% Similarity=0.427 Sum_probs=56.2
Q ss_pred HHHHHHHHh-hCCCCCC-ceeHHHHHHHHHhcCC---CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 130 EDMKEAFNV-FDQNGDG-FITFDELKSVLGSLGL---KQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 130 ~~~~~~F~~-~D~~~~G-~Is~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
..+..+|+. .|.+++| +|+.+||+.++..... .....+.++..+++.+|.|+||.|+|+||+.++..-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567889998 6788876 9999999999988631 111267899999999999999999999999988653
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.06 E-value=8.6e-10 Score=73.64 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
...+..+|..+|.|+||+|+.+|+..+. + .. .+..+..++..+|.|+||.||++||..++.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~--~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DP--NEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cc--hHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3678999999999999999999999876 2 22 5678899999999999999999999999843
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=1.5e-09 Score=64.04 Aligned_cols=61 Identities=41% Similarity=0.761 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 59 LDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
+..+|..+|.+++|.|+.+||..++..++...+.+.+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999998764
No 55
>PF14658 EF-hand_9: EF-hand domain
Probab=98.99 E-value=3.3e-09 Score=62.66 Aligned_cols=61 Identities=23% Similarity=0.471 Sum_probs=56.9
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHhcCC-CCCCCHHHHHHHHHhhCCCCC-CceeHHHHHHHHHc
Q 028812 134 EAFNVFDQNGDGFITFDELKSVLGSLGL-KQGRTVEDCKRMIMKVDVDGD-GMVDYKEFKQMMKG 196 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~d-g~i~~~eF~~~l~~ 196 (203)
.+|..||.++.|.|...++...|++++. .. ++.+++.+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p--~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP--EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC--cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3799999999999999999999999988 55 89999999999999998 99999999999975
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.98 E-value=5.5e-09 Score=66.67 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=57.9
Q ss_pred CHHHHHHHHHH-cCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 55 DQAELDRVFQM-FDHNGDG-RISKKELNDSLENL-----GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 55 ~~~~~~~~F~~-~D~~~~g-~i~~~ef~~~l~~l-----~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
....+..+|+. +|.+++| .|+.+||+.++... +......++..++..+|.|++|.|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35678889999 7788876 99999999999876 334566889999999999999999999999988665
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.96 E-value=3.4e-09 Score=77.92 Aligned_cols=140 Identities=23% Similarity=0.257 Sum_probs=98.8
Q ss_pred cCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc----
Q 028812 54 MDQAELDRVFQMFDHNGDGRISKKELNDSLENL---GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK---- 126 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l---~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~---- 126 (203)
...+.+..+|.+.|.|.+|+|+..|+++.+..- -..-..++-..-|+..|+|++|.|+++||.--+.......
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 357889999999999999999999999988643 1112334555678889999999999999976553211000
Q ss_pred -------------------------------------------------------ChHHHHHHHHHhhCCCCCCceeHHH
Q 028812 127 -------------------------------------------------------DEEEDMKEAFNVFDQNGDGFITFDE 151 (203)
Q Consensus 127 -------------------------------------------------------~~~~~~~~~F~~~D~~~~G~Is~~e 151 (203)
.-...+..+...+|.|+|..++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 0023467778889999999999999
Q ss_pred HHHHHHhc-----CCCCCCCHHHHH----HHHHhhCCCCCCceeHHHHHHHHH
Q 028812 152 LKSVLGSL-----GLKQGRTVEDCK----RMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 152 ~~~~l~~~-----~~~~~~~~~~~~----~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
|....--. |.+. .+..++ ++=..+|.|+||.++++|+..++-
T Consensus 258 FislpvGTVenqqgqdi--ddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDI--DDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhcCCCcchhhhhccch--HHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 97664221 3322 333332 334456999999999999888753
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.96 E-value=1.2e-08 Score=90.80 Aligned_cols=136 Identities=25% Similarity=0.473 Sum_probs=108.3
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 49 PTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIP-------DVELTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~-------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
...+.....++.-+|..||.+.+|.++..+|+.||+.+|+.++ ..++..++...|++.+|.|+..+|++++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4566778899999999999999999999999999999998763 247999999999999999999999998865
Q ss_pred Hhc-ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHh----hCCC----CCCceeHHHHHH
Q 028812 122 IME-EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMK----VDVD----GDGMVDYKEFKQ 192 (203)
Q Consensus 122 ~~~-~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~----~d~~----~dg~i~~~eF~~ 192 (203)
.-. .....+.+..+|+.+|. +..+|+.+++...| +.++..-++.. ++.. -.+.+.|.+|++
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l---------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~ 2394 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL---------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVN 2394 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhcC---------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHH
Confidence 433 23345689999999998 88999999986654 55555444433 3442 234689999988
Q ss_pred HH
Q 028812 193 MM 194 (203)
Q Consensus 193 ~l 194 (203)
.+
T Consensus 2395 sl 2396 (2399)
T KOG0040|consen 2395 SL 2396 (2399)
T ss_pred HH
Confidence 65
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.91 E-value=5.6e-09 Score=69.76 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=53.5
Q ss_pred CccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 52 STMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
.+.....+...|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|.|+++||...+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45577888999999999999999999999776 33456778888999999999999999998887
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.89 E-value=6.7e-09 Score=66.28 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCC--CCCceeHHHHHHHHH-hcCCCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 130 EDMKEAFNVFDQN--GDGFITFDELKSVLG-SLGLKQGRT----VEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 130 ~~~~~~F~~~D~~--~~G~Is~~e~~~~l~-~~~~~~~~~----~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
..+...|+.|+.. ++|+|+.+||+.++. .+|... + ++++..++..+|.+++|.|+|++|+.++..-
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~--t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL--KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh--ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5667789999866 489999999999997 455443 5 8999999999999999999999999988754
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.87 E-value=1.5e-08 Score=59.86 Aligned_cols=61 Identities=28% Similarity=0.485 Sum_probs=57.0
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCC-CceeHHHHHHHHHH
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENLGI-YIPDVELTQMIERIDVNGD-GCVDIDEFGALYKS 121 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l~~-~~~~~~~~~i~~~~d~~~~-g~i~~~ef~~~~~~ 121 (203)
.+|..+|+++.|.|...++..+|+.++. .+++.+++.+.+.+|+++. |.|+++.|+..++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 8999999999999999988 99999999998864
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=72.34 Aligned_cols=67 Identities=36% Similarity=0.578 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
...+..+|+.||.+.||+|+..|++.++..+|.+. +---+..+++..|.|.||+|++.+|.-+++..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--THL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--THLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCch--hhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 36788899999999999999999999999999887 66678999999999999999999999988754
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.79 E-value=3.5e-08 Score=62.98 Aligned_cols=67 Identities=22% Similarity=0.405 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFDHN--GDGRISKKELNDSLE-NLGIYIP----DVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D~~--~~g~i~~~ef~~~l~-~l~~~~~----~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+-..|+.|+.. ++|.|+.+||+.++. .++..++ .+++..++..+|.+++|.|+|+||+.++...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35667889999866 479999999999997 4555555 8999999999999999999999999988655
No 64
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.74 E-value=7.2e-08 Score=63.12 Aligned_cols=71 Identities=30% Similarity=0.520 Sum_probs=61.1
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 49 PTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
|.+++.+...+..+|..+|. ++|.|+.++.+.++.+.+. +.+.+..||...|.+++|.++++||+.++..+
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 46788899999999999986 5899999999999987765 77999999999999999999999999988655
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.73 E-value=1.4e-07 Score=67.35 Aligned_cols=106 Identities=21% Similarity=0.317 Sum_probs=82.5
Q ss_pred CccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChH-H
Q 028812 52 STMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEE-E 130 (203)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-~ 130 (203)
+..+++.+..+|..||.+.||+|+..|++.+|.++|.+-+.--+..++...|.|.+|+|+|.||+-++.......... .
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds 173 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDS 173 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccch
Confidence 334566667889999999999999999999999999988888899999999999999999999998887654433222 2
Q ss_pred HHHHH--HHhhCCCCCCceeHHHHHHHHH
Q 028812 131 DMKEA--FNVFDQNGDGFITFDELKSVLG 157 (203)
Q Consensus 131 ~~~~~--F~~~D~~~~G~Is~~e~~~~l~ 157 (203)
.+..+ ...+|..+-|......|-++=-
T Consensus 174 ~~~~LAr~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 174 GLLRLARLSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred HHHHHHHhcccchhhhhhhhHHHHHHHHH
Confidence 22222 2347888888888777765543
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.3e-07 Score=77.28 Aligned_cols=140 Identities=26% Similarity=0.399 Sum_probs=113.0
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc--
Q 028812 49 PTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK-- 126 (203)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~-- 126 (203)
+..+..++....+.|..+-+ +.|+|+.++-+.++-+.|+ +...+.+||...|.|+||+++..||..++..+...-
T Consensus 8 WavT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred cccchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 44555566666666766654 6899999999999887766 667889999999999999999999988775431100
Q ss_pred --------------------------------------------------------------------------------
Q 028812 127 -------------------------------------------------------------------------------- 126 (203)
Q Consensus 127 -------------------------------------------------------------------------------- 126 (203)
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ---------------------------ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC
Q 028812 127 ---------------------------DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDV 179 (203)
Q Consensus 127 ---------------------------~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~ 179 (203)
.+.-+++++|...|+..+|++|...-+.+|...+++ ...+..||..-|.
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp----q~~LA~IW~LsDv 240 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP----QNQLAHIWTLSDV 240 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc----hhhHhhheeeecc
Confidence 112457889999999999999999999999888765 4789999999999
Q ss_pred CCCCceeHHHHHHHHH
Q 028812 180 DGDGMVDYKEFKQMMK 195 (203)
Q Consensus 180 ~~dg~i~~~eF~~~l~ 195 (203)
|+||+++-+||+-.|.
T Consensus 241 d~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAMH 256 (1118)
T ss_pred CCCCcccHHHHHHHHH
Confidence 9999999999987764
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5.4e-08 Score=48.35 Aligned_cols=28 Identities=36% Similarity=0.775 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHHH
Q 028812 58 ELDRVFQMFDHNGDGRISKKELNDSLEN 85 (203)
Q Consensus 58 ~~~~~F~~~D~~~~g~i~~~ef~~~l~~ 85 (203)
+++++|+.+|+|++|.|+.+||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3567777777777777777777777664
No 68
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.62 E-value=2.9e-07 Score=63.10 Aligned_cols=66 Identities=23% Similarity=0.436 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYK 120 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 120 (203)
.++.|..+|+.+|.+++|.|+.+.++.+|...|...+.++++.+|+.+-.+..|.++|.+|+.++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 467888889999999999999999999988888888888999999888888888999988888775
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.60 E-value=9.9e-08 Score=47.38 Aligned_cols=25 Identities=52% Similarity=0.941 Sum_probs=12.0
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLG 157 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~ 157 (203)
+.+|+.+|.|++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3444444444444444444444443
No 70
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.50 E-value=1.1e-06 Score=57.52 Aligned_cols=63 Identities=27% Similarity=0.457 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
....+..+|...|. ++|.|+.++.+.++...++ +.+.+.+||...|.|++|+++++||+-+|+
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L----~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL----PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS----SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC----CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 45678889999984 6899999999999999876 569999999999999999999999998774
No 71
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.50 E-value=8.5e-07 Score=70.53 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=92.1
Q ss_pred cCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccC--------------hHHH
Q 028812 66 FDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKD--------------EEED 131 (203)
Q Consensus 66 ~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--------------~~~~ 131 (203)
++.+.+|.|++.|..-++.-|.. +...++-.|..||.|++|.|+.+||.........+.. ....
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~ 285 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVE 285 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhh
Confidence 46678999999999988887754 4455666789999999999999999887754433221 1112
Q ss_pred HHHH--HHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 132 MKEA--FNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 132 ~~~~--F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
+..+ -..|..+++|+++.+||.+++..+. .+.++-=|..+|....|.|+-.+|..+|-..
T Consensus 286 ~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 286 VNSALLTYFFGKRGNGKLSIDEFLKFQENLQ------EEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred hhhhHHHHhhccCCCccccHHHHHHHHHHHH------HHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 2222 3346899999999999999998773 3445555888888888899999998877543
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=2e-06 Score=54.50 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENL-----GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-----~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
...+-..|..|-. +.+.++..||+.++..- ........++.++...|.|+||.|+|+||+.++..+
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3566778999984 46799999999999752 334467889999999999999999999999988765
No 73
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.46 E-value=2.5e-07 Score=70.85 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc-CCCCCCCHHHHH
Q 028812 93 VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL-GLKQGRTVEDCK 171 (203)
Q Consensus 93 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-~~~~~~~~~~~~ 171 (203)
..+..+|..||.+++|.++|.|.+..+..+.........++.+|++|+.+.||.+...+|--+|+.. |. .+-.+-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv----~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV----EVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc----ceeecc
Confidence 5678899999999999999999998887665666678899999999999999999999988888764 33 233456
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 172 RMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 172 ~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
.+|...+...+|+|++++|..++...+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 779999999999999999999886544
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.42 E-value=3.3e-06 Score=57.47 Aligned_cols=99 Identities=20% Similarity=0.397 Sum_probs=79.8
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHH----H
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENLG-IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKE----A 135 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l~-~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~----~ 135 (203)
++...+..||.|.+++++|..++.-+. ..+..-.+...|..+|-|+++.|.-++....+..+.......+++.. +
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 566778899999999999999888663 33444556778889999999999999999998887766666666544 4
Q ss_pred HHhhCCCCCCceeHHHHHHHHHhc
Q 028812 136 FNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 136 F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
...-|.|+||.|+..||..++.+.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 556699999999999999988654
No 75
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.41 E-value=1.1e-06 Score=70.05 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHHHH---hcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 92 DVELTQMIERIDVNGDGCVDIDEFGALYKSI---MEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 92 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
...++.||+.+|.|++|.|+.+||..+|..+ +...-....+.++-+.+|.|+||+|+..||.++++-.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4456677777777777777777777666443 2333445666666777777777777777777766544
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.40 E-value=6.5e-07 Score=45.29 Aligned_cols=29 Identities=59% Similarity=1.208 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHH-hcC
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLG-SLG 160 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~-~~~ 160 (203)
++.+|+.+|.|++|+|+.+||+.+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 454
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.37 E-value=3.6e-06 Score=53.37 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcCC---CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLGL---KQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
..+..+|+.|..+ .+.++..||+.++...-- .-....+.++++++..|.|+||.|+|.||+..+..
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567788888744 569999999999866411 11125678999999999999999999999988754
No 78
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.36 E-value=6.2e-06 Score=55.72 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=87.7
Q ss_pred CHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCC--CCCceeHHHHHHHHHhcCCC-CCCCH
Q 028812 91 PDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQN--GDGFITFDELKSVLGSLGLK-QGRTV 167 (203)
Q Consensus 91 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~--~~G~Is~~e~~~~l~~~~~~-~~~~~ 167 (203)
...+++.+|..||..+||+|++.+--..++.. ...+....+.+....++.+ +--.|+.++|.-++..++-+ ...+-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 34789999999999999999999988777554 6666778888898888777 56789999999998877433 22366
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 168 EDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 168 ~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
+++-+-++.+|+++.|.|...|+..+|..-|
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLG 118 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHH
Confidence 7788889999999999999999999987544
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=8.1e-07 Score=44.95 Aligned_cols=30 Identities=47% Similarity=0.785 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHH-HhC
Q 028812 58 ELDRVFQMFDHNGDGRISKKELNDSLE-NLG 87 (203)
Q Consensus 58 ~~~~~F~~~D~~~~g~i~~~ef~~~l~-~l~ 87 (203)
+++.+|+.+|.|++|.|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 454
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=63.01 Aligned_cols=96 Identities=20% Similarity=0.399 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHHHhccc----Ch----HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCC
Q 028812 95 LTQMIERIDVNGDGCVDIDEFGALYKSIMEEK----DE----EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRT 166 (203)
Q Consensus 95 ~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~----~~----~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~ 166 (203)
+..|...+|.|++..++..+|+.......... .. ....+..=..+|.|.||.+|.+|+...+....... .
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~--a 315 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRL--A 315 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhh--h
Confidence 45567777888888899999887643221111 01 22334444578999999999999999876655544 6
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 167 VEDCKRMIMKVDVDGDGMVDYKEFKQ 192 (203)
Q Consensus 167 ~~~~~~~~~~~d~~~dg~i~~~eF~~ 192 (203)
..++..++...|.+++.+++.++...
T Consensus 316 lne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 316 LNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhhccCCCcccCHHHHHH
Confidence 78899999999999999999998765
No 81
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.34 E-value=1.2e-05 Score=68.26 Aligned_cols=143 Identities=17% Similarity=0.346 Sum_probs=119.4
Q ss_pred ccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHH
Q 028812 53 TMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDM 132 (203)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 132 (203)
......+..+|+..|++.+|.++..+...++..++..+....+..+|...+..+++++..++|..+....... ..+
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----pev 207 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----PEV 207 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----chH
Confidence 3456778889999999999999999999999999998899999999999999999999999999887665332 278
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCC----CCceeHHHHHHHHHcCCCC
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDG----DGMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~----dg~i~~~eF~~~l~~~~~~ 200 (203)
..+|..+- ++.++++.+++.+++...+-....+.+.+.++++.+.... .+.++.+.|..+|-.....
T Consensus 208 ~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~ 278 (746)
T KOG0169|consen 208 YFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCN 278 (746)
T ss_pred HHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCC
Confidence 88888884 4499999999999999986555568889999998885543 4569999999999765443
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.30 E-value=5.6e-06 Score=66.74 Aligned_cols=54 Identities=26% Similarity=0.477 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
....++.+|+.+|.+++|.|+.+||.. +..+|+.+|.|+||.|+++||...+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 356788999999999999999999831 467899999999999999999998864
No 83
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.20 E-value=9.6e-06 Score=65.16 Aligned_cols=132 Identities=20% Similarity=0.366 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHH--HHHh------------CCCCCHHHHHHH---HHhcCCCCCCceeHHHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDS--LENL------------GIYIPDVELTQM---IERIDVNGDGCVDIDEFGAL 118 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~--l~~l------------~~~~~~~~~~~i---~~~~d~~~~g~i~~~ef~~~ 118 (203)
.-.+.++|...++.+.|.|+..++... +..+ ..-.+.+....+ |...|+|++|.|+-++...+
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 455678899999999999999998752 2211 111223444455 67789999999999998877
Q ss_pred HHHHhcccChHHHHHHHHH----hhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 028812 119 YKSIMEEKDEEEDMKEAFN----VFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQM 193 (203)
Q Consensus 119 ~~~~~~~~~~~~~~~~~F~----~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 193 (203)
....+ ....+..+|. ..-...+|.++.++|..++-++-... +..-++.+|+-+|.+++|.++..|..-+
T Consensus 304 ~d~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~--t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 304 GDHTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD--TPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred hccch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC--CccchhhheeeeeccCCCcccHHHHHHH
Confidence 64443 2467788888 34456789999999999998886555 7788999999999999999997775443
No 84
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.17 E-value=1.4e-05 Score=64.80 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=59.4
Q ss_pred cCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc-------------------
Q 028812 66 FDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK------------------- 126 (203)
Q Consensus 66 ~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~------------------- 126 (203)
.|.-.||.|+++||+.+=.-+.. +......+|..||..++|.++++++...+.......
T Consensus 83 aD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 34555666666666554332222 344555566666666666666666665553321100
Q ss_pred ---------------ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC
Q 028812 127 ---------------DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ 163 (203)
Q Consensus 127 ---------------~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~ 163 (203)
-..+...++|+..|+.++|.||.-+++.++...-.+.
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~ 212 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL 212 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc
Confidence 0235678899999999999999999999987764443
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.16 E-value=1.1e-05 Score=44.96 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 74 ISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 74 i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
++.+|++.+|+.++..+....+..+|...|.+++|.+.-+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6788999999999888888889999999999999999999988887643
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.15 E-value=4.2e-06 Score=39.96 Aligned_cols=23 Identities=48% Similarity=0.969 Sum_probs=13.0
Q ss_pred HHHHHhhCCCCCCceeHHHHHHH
Q 028812 133 KEAFNVFDQNGDGFITFDELKSV 155 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~ 155 (203)
+.+|+.+|.|+||.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555556666666666665553
No 87
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.13 E-value=1.9e-05 Score=71.28 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc-C-----hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc-CCCCCC
Q 028812 93 VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK-D-----EEEDMKEAFNVFDQNGDGFITFDELKSVLGSL-GLKQGR 165 (203)
Q Consensus 93 ~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~-----~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-~~~~~~ 165 (203)
.++..+|..||.+.+|.+++++|..++......- . .+..+..+....|++.+|+|+..++..++-.- ..++ .
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI-~ 2331 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI-L 2331 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc-c
Confidence 3567789999999999999999999998764433 2 23489999999999999999999998887554 3333 4
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 028812 166 TVEDCKRMIMKVDVDGDGMVDYKEFKQM 193 (203)
Q Consensus 166 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 193 (203)
++++++..|+..+. +..+|+.++....
T Consensus 2332 s~~eIE~AfraL~a-~~~yvtke~~~~~ 2358 (2399)
T KOG0040|consen 2332 SSEEIEDAFRALDA-GKPYVTKEELYQN 2358 (2399)
T ss_pred chHHHHHHHHHhhc-CCccccHHHHHhc
Confidence 77899999999988 6677877766443
No 88
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.13 E-value=6.3e-05 Score=61.11 Aligned_cols=103 Identities=21% Similarity=0.445 Sum_probs=75.7
Q ss_pred CHHHHHHHH---HHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHH-hcCCCCCCceeHHHHHHHHHHHhcccChH
Q 028812 55 DQAELDRVF---QMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIE-RIDVNGDGCVDIDEFGALYKSIMEEKDEE 129 (203)
Q Consensus 55 ~~~~~~~~F---~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~-~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 129 (203)
+.+++..+| ...+.++....+.++|....-.+ +......++.++.. ..|.-+||-|+|+||+.+= .+++. .+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe-~~lC~--pD 107 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFE-SVLCA--PD 107 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHH-hhccC--ch
Confidence 445666665 45578888899999998755444 43334445555544 4578899999999998654 33344 35
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcC
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLG 160 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~ 160 (203)
.....+|..||..++|.+|.+++.+++....
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 6778899999999999999999999998764
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.09 E-value=4.9e-06 Score=39.74 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHH
Q 028812 59 LDRVFQMFDHNGDGRISKKELNDS 82 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~i~~~ef~~~ 82 (203)
++.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355677777777777777777654
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.08 E-value=1.8e-05 Score=63.85 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 87 GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 87 ~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
|.......+..+|..+|.|++|.|+.+||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4556678899999999999999999999952 3568999999999999999999998653
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.05 E-value=2.9e-05 Score=43.37 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=33.5
Q ss_pred eeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 147 ITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 147 Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
++..|++.+|+.+.... .++-+..+|+..|.+++|.+..+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~~--~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEM--DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCc--CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 56778888888777766 7777778888888888888888888777653
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.95 E-value=6e-06 Score=55.06 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQM 193 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 193 (203)
....+...|..+|.|+||.|+..|++.+...+ . ..+..+..++...|.|+||.|+..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-M---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-S---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-h---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 45678888999999999999999998886655 1 25667899999999999999999999764
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=7.3e-05 Score=61.09 Aligned_cols=74 Identities=20% Similarity=0.439 Sum_probs=65.7
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 48 NPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYI---PDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 48 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
.+.++..+..+++..|...| +++|.|+..|+..++.+.+... ..++++.++...+.|.+|.|+|++|+..+..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 45678889999999999999 9999999999999999876543 47889999999999999999999999977655
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.78 E-value=1e-05 Score=54.00 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=34.7
Q ss_pred cCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 028812 54 MDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGA 117 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~ 117 (203)
.....+.-.|..+|.|+||.|+..|+..+...+ ...+.-+...+...|.|+||.|+..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345556666777777777777777776655534 33444456666667777777777776653
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.74 E-value=0.00022 Score=44.80 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHcCC
Q 028812 131 DMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVD----GDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 131 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i~~~eF~~~l~~~~ 198 (203)
++..+|..|-. +.+.||.++|+++|.........+.+.+..++..+..+ ..+.+++++|..+|...-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36789999955 89999999999999888665445899999999998554 478999999999997654
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00037 Score=45.62 Aligned_cols=59 Identities=25% Similarity=0.440 Sum_probs=36.2
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHhc------CC-CCC-CCHHHHHHH----HHhhCCCCCCceeHHHHHHH
Q 028812 135 AFNVFDQNGDGFITFDELKSVLGSL------GL-KQG-RTVEDCKRM----IMKVDVDGDGMVDYKEFKQM 193 (203)
Q Consensus 135 ~F~~~D~~~~G~Is~~e~~~~l~~~------~~-~~~-~~~~~~~~~----~~~~d~~~dg~i~~~eF~~~ 193 (203)
-|.+.|.|++|.|+.-|+..++... |. +.+ .++.|++.+ ++.-|.|+||.|+|-||...
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4555666666666666665555433 11 111 244555555 44558899999999999864
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0019 Score=42.39 Aligned_cols=64 Identities=28% Similarity=0.454 Sum_probs=43.5
Q ss_pred CHHHHH-HHHHHcCCCCCCcccHHHHHHHHHHh------CC----CCCHHHHHHHH----HhcCCCCCCceeHHHHHHH
Q 028812 55 DQAELD-RVFQMFDHNGDGRISKKELNDSLENL------GI----YIPDVELTQMI----ERIDVNGDGCVDIDEFGAL 118 (203)
Q Consensus 55 ~~~~~~-~~F~~~D~~~~g~i~~~ef~~~l~~l------~~----~~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~ 118 (203)
+.++++ ..|.++|-|++|.|+--|+..++.-. |. -+++.++.++. .--|.|+||.|+|.||+..
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 334443 56899999999999999999988743 21 12344444444 4447788888888888753
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.44 E-value=0.00057 Score=56.09 Aligned_cols=64 Identities=31% Similarity=0.528 Sum_probs=55.4
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ-GRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
..+...|...| +++|+|+..|+..++...+... ....+++++++...+.|.+|+|++++|+..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 45677899999 9999999999999999886542 2247899999999999999999999999955
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.44 E-value=0.00046 Score=53.37 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHH
Q 028812 57 AELDRVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEA 135 (203)
Q Consensus 57 ~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 135 (203)
..+...|..||.+++|.++..|-...+.-+ +...+...++..|..|+...||.++-.+|..+++..+. ...-.+.-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 677889999999999999999887777655 66778889999999999999999999888777765432 223456678
Q ss_pred HHhhCCCCCCceeHHHHHHHHHhcC
Q 028812 136 FNVFDQNGDGFITFDELKSVLGSLG 160 (203)
Q Consensus 136 F~~~D~~~~G~Is~~e~~~~l~~~~ 160 (203)
|...+...+|+|+.++|+++....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999987654
No 100
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00038 Score=61.77 Aligned_cols=142 Identities=23% Similarity=0.390 Sum_probs=115.4
Q ss_pred CCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc
Q 028812 47 TNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK 126 (203)
Q Consensus 47 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 126 (203)
..+..++.+...+..+|..+.+. +|.++.+..+.++..-++ ....+.+++...|.+.+|.++..||...++......
T Consensus 119 ~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~L--p~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 119 FVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKL--PSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCC--ChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 34567778889999999999886 889999998888875544 666788999999999999999999987765432110
Q ss_pred --------------------------------------------------------------------------------
Q 028812 127 -------------------------------------------------------------------------------- 126 (203)
Q Consensus 127 -------------------------------------------------------------------------------- 126 (203)
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~ 275 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSP 275 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCc
Confidence
Q ss_pred ----ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 127 ----DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 127 ----~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
.+...+.++|...|.+++|.|+..+.+..+...|. ....+..+|...|.++.|.+++.+|.-.+.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl----~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL----SKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCC----ChhhhhhhhhhcchhccCcccccccchhhh
Confidence 01245667899999999999999999999988665 568899999999999999999999887664
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.37 E-value=0.0028 Score=44.94 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC---CCCCceeHHHHHHH---HHHHhc-----
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDV---NGDGCVDIDEFGAL---YKSIME----- 124 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~---~~~g~i~~~ef~~~---~~~~~~----- 124 (203)
...+++-...+|+|+||.|...|-...++.+|...--..+..++-.... -..+.+.-.-|.-. +.....
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 3457777888999999999999999999999887655443333321110 01111111111101 111101
Q ss_pred -----ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC-----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 125 -----EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ-----GRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 125 -----~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~-----~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
.+-..+++..+|..|+..+.+.+|..|+.++++.-.... ....-|...++..+ .+++|.+..|+-..++
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 112367899999999999999999999999998742211 11445777777765 6788999998877665
Q ss_pred H
Q 028812 195 K 195 (203)
Q Consensus 195 ~ 195 (203)
-
T Consensus 165 D 165 (174)
T PF05042_consen 165 D 165 (174)
T ss_pred c
Confidence 3
No 102
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.32 E-value=0.0029 Score=52.93 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=94.2
Q ss_pred CCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCC-----CCCceeHHHHHHHHH
Q 028812 47 TNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVN-----GDGCVDIDEFGALYK 120 (203)
Q Consensus 47 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~-----~~g~i~~~ef~~~~~ 120 (203)
....+.+.-.+.+.++|...|.|++|.++-.|+...-... +.++...++..+-...+.. .+..+...-|+.+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 3345666678999999999999999999999998877664 5666666666655554322 133455555665543
Q ss_pred HHhcccC-----------------------------------------hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 121 SIMEEKD-----------------------------------------EEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 121 ~~~~~~~-----------------------------------------~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
.+..... -.+-+..+|..||.|+||.++..|+..++...
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 3322210 02457888999999999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 160 GLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+... .+..-.. ...-.+..|.+++..|....
T Consensus 345 P~~p-W~~~~~~---~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 345 PGSP-WTSSPYK---DSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred CCCC-CCCCccc---ccceecccceeehhhHHHHH
Confidence 5432 0100000 00112256788888877643
No 103
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.20 E-value=0.0025 Score=55.88 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=87.4
Q ss_pred CccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc
Q 028812 52 STMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPD-----VELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK 126 (203)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~-----~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 126 (203)
++....++..+|..++....|.++.++|..++..+|..... +++.++.+..|.+..|.+++.+|...+..-....
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 33457888899999999999999999999999999987653 4566677777888889999999999999988888
Q ss_pred ChHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 127 DEEEDMKEAFNVFDQNGDGFITFDELKS 154 (203)
Q Consensus 127 ~~~~~~~~~F~~~D~~~~G~Is~~e~~~ 154 (203)
.....+..+|+.+-+++. +|..+|+..
T Consensus 822 ~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 822 DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 888999999999977766 899999877
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.17 E-value=0.00059 Score=32.69 Aligned_cols=26 Identities=42% Similarity=0.871 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHH
Q 028812 59 LDRVFQMFDHNGDGRISKKELNDSLE 84 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~i~~~ef~~~l~ 84 (203)
++.+|..+|.+++|.|+.++|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45667777777777777777776665
No 105
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.12 E-value=0.00076 Score=32.28 Aligned_cols=26 Identities=42% Similarity=0.776 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 170 CKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 170 ~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
+..+|+.+|.+++|.|++.+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34455555555556666666655554
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0018 Score=52.96 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=67.4
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 028812 46 NTNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEE 125 (203)
Q Consensus 46 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 125 (203)
...+..+.++++-+-..|+-+-+|-+|.|+-.--++++.+.. +..+++..||+..|.++||.+++.||+..++.+..+
T Consensus 220 d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 220 DTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred CCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 344567777888888999999999999999999999888664 477899999999999999999999999999776544
Q ss_pred c
Q 028812 126 K 126 (203)
Q Consensus 126 ~ 126 (203)
+
T Consensus 298 k 298 (737)
T KOG1955|consen 298 K 298 (737)
T ss_pred c
Confidence 3
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0025 Score=52.12 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH-----cCCCCCC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK-----GGGFSAL 202 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~-----~~~~~~~ 202 (203)
++.+...|+.+..|-.|+|+...-++++.+..+.+ .|+..||...|.|.||.+++.||+..|+ ++|+..|
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi----~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLP 304 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPI----EELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLP 304 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhccCch----HHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCC
Confidence 46778889999999999999999999998876654 8999999999999999999999999874 6666544
No 108
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.92 E-value=0.002 Score=50.33 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHH
Q 028812 57 AELDRVFQMFDHNGDGRISKKELNDSLENLG---IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMK 133 (203)
Q Consensus 57 ~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~---~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (203)
..+..+|..+-.+.++......+..+-..+. .++-..++..+|+..|.|.||.++..|...+.... ++..++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHH
Confidence 3456779988888887777777766654442 24567899999999999999999999987765443 667899
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHH
Q 028812 134 EAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRM 173 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 173 (203)
-.|...|..+||.|+..|+-..+...+.+ ...+...+
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~~p---c~~e~~ri 322 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSDPP---CQAELCRI 322 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCCCc---cccHHHHH
Confidence 99999999999999999998888777633 34444444
No 109
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.90 E-value=0.0029 Score=39.66 Aligned_cols=64 Identities=16% Similarity=0.333 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHHHH
Q 028812 58 ELDRVFQMFDHNGDGRISKKELNDSLENLGI--YIPDVELTQMIERIDVN----GDGCVDIDEFGALYKSI 122 (203)
Q Consensus 58 ~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~--~~~~~~~~~i~~~~d~~----~~g~i~~~ef~~~~~~~ 122 (203)
+|..+|..+.. +.+.|+.++|...|+.-.. ..+.+++..++..+..+ ..+.++++.|..++.+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47788999966 7889999999999987633 35788899999888554 46888999998887554
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=96.81 E-value=0.017 Score=49.37 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCceeHHHHHHHHHHHhc-ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhC------
Q 028812 106 GDGCVDIDEFGALYKSIME-EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVD------ 178 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d------ 178 (203)
+.|.++|++|..+...+.. ....+.++..+|..+-. +.+.|+.++|..+|.........+.+++..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3579999999877765532 22246789999998854 447899999999998876543346677777765431
Q ss_pred -CCCCCceeHHHHHHHHHcC
Q 028812 179 -VDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 179 -~~~dg~i~~~eF~~~l~~~ 197 (203)
..+.+.++++.|..+|...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 1123458999999999754
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0056 Score=52.71 Aligned_cols=67 Identities=25% Similarity=0.456 Sum_probs=58.9
Q ss_pred cCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 54 MDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
-..-.+.++|+.+|+..+|.++-.+-+.+|-..++ +...+..||..-|.|+||.++-+||+-.+..+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 35678889999999999999999999999987755 67789999999999999999999998876544
No 112
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.007 Score=53.98 Aligned_cols=137 Identities=28% Similarity=0.412 Sum_probs=110.2
Q ss_pred CccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc-----
Q 028812 52 STMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK----- 126 (203)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~----- 126 (203)
.+.....+..+|+..|..++|.|+..+-..++..-++ ....+.+++...|..+.|.++..+|...+.......
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L--~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGL--PDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhcccc--chhhhhccccccccccCCccccccccccchHhhhhhcccCc
Confidence 3345577889999999999999999999988886655 777888999999999999999999988775443211
Q ss_pred ------------------------------------------ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCC
Q 028812 127 ------------------------------------------DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQG 164 (203)
Q Consensus 127 ------------------------------------------~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~ 164 (203)
........+|..+... +|.++.+..+-++..-+++
T Consensus 84 ~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp-- 160 (847)
T KOG0998|consen 84 SAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLP-- 160 (847)
T ss_pred CccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCC--
Confidence 0124566778888654 8999999999999877664
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 165 RTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 165 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
.+.+..++...|.|.+|.++..+|.-.|+
T Consensus 161 --~~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 161 --SDVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred --hhhhccccccccccccCCCChhhhhhhhh
Confidence 36677899999999999999999988775
No 113
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.01 E-value=0.14 Score=36.43 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=18.3
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 166 TVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 166 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
..+..+++|..++..+.+.+|+.|..++++.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 4555666666666555555666666665543
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.68 E-value=0.12 Score=44.90 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHH
Q 028812 94 ELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRM 173 (203)
Q Consensus 94 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 173 (203)
-+..+|...|++++|.+++.+-..++..+...- ....++..|+..|..+++.+...++.++....+.. . ++..+
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----p-ev~~~ 210 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----P-EVYFL 210 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----c-hHHHH
Confidence 367789999999999999999988887654332 45678888998899999999999999998877643 2 67777
Q ss_pred HHhhCCCCCCceeHHHHHHHHHc
Q 028812 174 IMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 174 ~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
|..+-.+ .+.++.+++..++..
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHH
Confidence 7776433 666777777766653
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.48 E-value=0.027 Score=44.25 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
...+...|..+|.|.||.++..|++.+-..- -+.-++.+|...|...||.|+-.|++-++.+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELDK------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhccC------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 4678889999999999999999998885422 456789999999999999999999999988765
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.30 E-value=0.02 Score=44.62 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 95 LTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 95 ~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
+..-|..+|.|.++.|+..|+..+-..+..........+..|+..|.|+|..||++|++..+..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3445555666666666665555444333333333455566666666666666666666665543
No 117
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.09 E-value=0.2 Score=31.82 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhc-------CCC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSL-------GLK--QGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~~~--~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
++++.+|..+ .|.+|.++...|..++... |.. ....+..++..|.... ....|+.++|+++|...+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 6788899998 6889999999888887653 221 1125677888888762 445699999999998764
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.95 E-value=0.96 Score=40.36 Aligned_cols=126 Identities=14% Similarity=0.247 Sum_probs=84.2
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC--CCCCCc-----eeHHHHHHHHHHHhcccChHHHHHHHHHhh
Q 028812 67 DHNGDGRISKKELNDSLENLGIYIPDVELTQMIERID--VNGDGC-----VDIDEFGALYKSIMEEKDEEEDMKEAFNVF 139 (203)
Q Consensus 67 D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d--~~~~g~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~ 139 (203)
-.+..|.|....+.+.+..-. ....++..+.... .++... .+++.|..++..+.. +.++..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHh
Confidence 355667777766666554321 1133444444332 222233 456666666655533 27899999999
Q ss_pred CCCCCCceeHHHHHHHHHhcCCCC--------CCCHHHHHHHHHhhCCCC----CCceeHHHHHHHHHcCCC
Q 028812 140 DQNGDGFITFDELKSVLGSLGLKQ--------GRTVEDCKRMIMKVDVDG----DGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 140 D~~~~G~Is~~e~~~~l~~~~~~~--------~~~~~~~~~~~~~~d~~~----dg~i~~~eF~~~l~~~~~ 199 (203)
..++.-++|.++|..++.....+. ......+..++..+..|+ .|.++-+.|+.++...-.
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdEn 302 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDEN 302 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCcc
Confidence 999889999999999998764332 125677888999987764 789999999999987433
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.87 E-value=0.03 Score=43.67 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
+++.+.-.|..+|.|+++.|+..|++.+=+-+ .......-...++...|.|+|..|++.|+...+..
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45566777999999999999999976554433 22334556778888899999999999999988754
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.80 E-value=0.064 Score=45.62 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHH
Q 028812 74 ISKKELNDSLENLG-IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDEL 152 (203)
Q Consensus 74 i~~~ef~~~l~~l~-~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~ 152 (203)
|+...|..+++.+. +..+..-+.++|...|.+.+|.++|.+++..+..+ .....-+.+.-+|+.+|.+++ ....++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l-~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL-KAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH-HhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45555555555542 23456678899999999999999999999998665 444456788899999999999 9999988
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.62 E-value=0.34 Score=34.17 Aligned_cols=63 Identities=13% Similarity=0.370 Sum_probs=48.4
Q ss_pred HHHHHHc---CCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 60 DRVFQMF---DHNGDGRISKKELNDSLENLGI---YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 60 ~~~F~~~---D~~~~g~i~~~ef~~~l~~l~~---~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
+.+|..| ...+...++-..|..+++..+. .++..+++-+|..+-..+..+|+|++|+.++..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455554 4666778999999999998754 5788999999999877777789999999998665
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.47 E-value=0.13 Score=43.23 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 028812 45 SNTNPTRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIME 124 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 124 (203)
....-.+++++....+..|..+|.|+.|.+..++...+|...+...+...+.++.+..|.+..|.+...||..++.....
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 33445678888888889999999999999999999999999988889999999999999999999999999998877644
Q ss_pred c
Q 028812 125 E 125 (203)
Q Consensus 125 ~ 125 (203)
.
T Consensus 661 g 661 (680)
T KOG0042|consen 661 G 661 (680)
T ss_pred C
Confidence 3
No 123
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.92 E-value=0.76 Score=32.41 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCCCCceeHHHHHHHHHhcCC-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 140 DQNGDGFITFDELKSVLGSLGL-KQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 140 D~~~~G~Is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
-..+...++...|..+|+..++ +..++...++-+|..+-..+..+|+|++|..+|.
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3445556666666666666644 2223666666666665444445566666666664
No 124
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.87 E-value=0.14 Score=39.80 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=48.4
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhc---CCCCCCCHHHH-----------HHHHHhhCCCCCCceeHHHHHHHHHcCC
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSL---GLKQGRTVEDC-----------KRMIMKVDVDGDGMVDYKEFKQMMKGGG 198 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~---~~~~~~~~~~~-----------~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 198 (203)
...|...|.|+||+++-.|+..++... .++..-.++.+ +.+++.+|.|.|..|+.+||++.-.+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 446888899999999999998887543 11110112222 2347778999999999999998776655
Q ss_pred CCC
Q 028812 199 FSA 201 (203)
Q Consensus 199 ~~~ 201 (203)
+..
T Consensus 327 f~~ 329 (442)
T KOG3866|consen 327 FNP 329 (442)
T ss_pred cCC
Confidence 543
No 125
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.81 E-value=0.34 Score=37.75 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHh----CC-CCCHHH-----------HHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENL----GI-YIPDVE-----------LTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l----~~-~~~~~~-----------~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
-.|..+|.|++|.++-.|+..++..- .. .....+ -..++..+|.|.|..|+.+||+.....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 35677788899999999888777642 11 111111 123556677777777888887766543
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.79 E-value=0.047 Score=32.83 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC----C---CCCceeHHHHHHH
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDV----D---GDGMVDYKEFKQM 193 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~----~---~dg~i~~~eF~~~ 193 (203)
..+.+..+|+.+ .++.++||.+||++.|. .+..+.+...+.. + ..|.++|..|.+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~---------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT---------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS----------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC---------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 347889999999 77889999999999974 2233444444322 1 2366899988753
No 127
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.43 E-value=0.19 Score=42.37 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=55.8
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
.+.-|..+|.|+.|+++.+++.++++..+... +++.+.+...++|.+..|.+...||.+.+.
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~--d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGW--DEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 44568899999999999999999999998665 889999999999999999999999998875
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=93.36 E-value=0.94 Score=39.07 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhccc-ChHHHHHHHHHhh----C--
Q 028812 70 GDGRISKKELNDSLENLGI--YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEK-DEEEDMKEAFNVF----D-- 140 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~--~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~----D-- 140 (203)
+.|.+++++|..+.+.+.. .....++..+|..+-.++ +.++.++|..++....... ...+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3689999999888887743 336789999999996544 6899999999998876543 3344455554432 1
Q ss_pred -CCCCCceeHHHHHHHHH
Q 028812 141 -QNGDGFITFDELKSVLG 157 (203)
Q Consensus 141 -~~~~G~Is~~e~~~~l~ 157 (203)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12335689999998885
No 129
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.68 E-value=0.2 Score=42.74 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=55.7
Q ss_pred eeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHH
Q 028812 110 VDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKE 189 (203)
Q Consensus 110 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~e 189 (203)
++|+.|..++...........-...+|+.+|.+.+|.|+..++..-+..+.... --+.+.-+|+.+|.+.+ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~--~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD--ALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh--HHHHHHHHHhhccCCcc-cccccc
Confidence 556666666655544444556678999999999999999999999988875443 33556667888888777 555444
No 130
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.68 E-value=0.25 Score=46.01 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=49.4
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 135 AFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 135 ~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
.|+.||.|+.|.|+..+|..++..... .+..|++-++.-+..|.+..++|++|++-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~---ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH---YTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc---chhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 488889999999999999999865432 27788888888888888899999999987653
No 131
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.73 E-value=0.56 Score=41.89 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHH---HHHHHHHhhCCCCCCceeHHHHHHHHHcC
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVE---DCKRMIMKVDVDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~---~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 197 (203)
...++..|..+|....|.++.+++.+.+..+|....-.+. ++..++...|.+..|.+++.+|.+.|.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4678999999999999999999999999999998722222 33344444577778999999999998764
No 132
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.72 E-value=0.35 Score=45.11 Aligned_cols=57 Identities=21% Similarity=0.453 Sum_probs=48.5
Q ss_pred HHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 028812 63 FQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYK 120 (203)
Q Consensus 63 F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 120 (203)
|+.+|+|+.|.|+..+|..++..- ...+..+++-++.-...|.+...+|++|+.-+.
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 677899999999999999998743 235778888888888899999999999998764
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.18 E-value=2.6 Score=28.66 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
+..++..||.+++|.|+.-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4557888899999999998888877543
No 134
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.06 E-value=1.3 Score=36.24 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=58.7
Q ss_pred CCCcccHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCC
Q 028812 70 GDGRISKKELNDSLENLG----IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDG 145 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~----~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G 145 (203)
|+...+..||+.+..... ..+.-+.++.|-+.+|.|.+|.|+.+|=-.++..-+........-...|.. .|.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDK 116 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Ccc
Confidence 334445555544433221 233456677788888888888888887777766554444333333445544 356
Q ss_pred ceeHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 028812 146 FITFDELKSVLGSLGLKQGRTVEDCKRMIM 175 (203)
Q Consensus 146 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~ 175 (203)
.||.+++-+++...-.. ..+.++..+++-
T Consensus 117 ~ItVedLWeaW~~Sev~-nWT~e~tvqWLi 145 (575)
T KOG4403|consen 117 HITVEDLWEAWKESEVH-NWTNERTVQWLI 145 (575)
T ss_pred ceeHHHHHHHHHhhhhh-cchHHHHHHHHH
Confidence 89999987777654222 125565555543
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.95 E-value=0.32 Score=29.23 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-------CCCCceeHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDV-------NGDGCVDIDEFGA 117 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~-------~~~g~i~~~ef~~ 117 (203)
+.+++...|+.+ .++.+.|+.+||+..|. +-.. +.+.+.+.. ...|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~----pe~a---ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT----PEQA---EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-----CCCH---HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC----cHHH---HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 458899999999 88899999999998865 1222 344443321 2247799998874
No 136
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=90.16 E-value=1.6 Score=28.20 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=53.6
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCce
Q 028812 70 GDGRISKKELNDSLENLG--IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFI 147 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~--~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I 147 (203)
.||.++..|...+-..+. ...+..+...++..+........++.+|...+...........-+..+|..- ..||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 378888888776655431 2456777788877776666677888888888765432222334455555554 456788
Q ss_pred eHHHHHHH
Q 028812 148 TFDELKSV 155 (203)
Q Consensus 148 s~~e~~~~ 155 (203)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 88775433
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.18 E-value=1.7 Score=37.45 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHc
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDV-DGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~-~~dg~i~~~eF~~~l~~ 196 (203)
..++..+|..+-. ++.++.++|..+|.........+.+.+..++..+.. ...+.++++.|..+|..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3567777777742 467888888888777654433356667777766521 23455888888888765
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=88.40 E-value=2.5 Score=36.31 Aligned_cols=66 Identities=17% Similarity=0.353 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHc
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVD----GDGMVDYKEFKQMMKG 196 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i~~~eF~~~l~~ 196 (203)
..++..+|..+-. ++.++.++|.++|.........+.+.+.+++..+... ..|.++.+.|..+|..
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4566667766642 2467777777777666433222455666676666432 2356788888877754
No 139
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.07 E-value=5 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 028812 57 AELDRVFQMFDHNGDGRISKKELNDSLE 84 (203)
Q Consensus 57 ~~~~~~F~~~D~~~~g~i~~~ef~~~l~ 84 (203)
+.++-+|..+ .|++|.++...|..+|+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~ 29 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLH 29 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHH
Confidence 5677788888 67788999998888887
No 140
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.93 E-value=3.4 Score=35.76 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCC-CCCCCHHHHHHHHHhhC-------CCCCCceeHHHHHHHHHcC
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGL-KQGRTVEDCKRMIMKVD-------VDGDGMVDYKEFKQMMKGG 197 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~d-------~~~dg~i~~~eF~~~l~~~ 197 (203)
...++..+|..|- .+.+.++.++|.++|..... ....+.+++..++..+- .-+.+.++.+.|..+|...
T Consensus 27 p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 3467888898884 33479999999999988763 22235566666665431 1123459999999988764
No 141
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.36 E-value=3.9 Score=36.51 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHH--HHHHH
Q 028812 59 LDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVE-LTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEE--DMKEA 135 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~-~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~--~~~~~ 135 (203)
+.+.+...|.+....|+..+++..+.+.....+... +.+-|.. |.-+.+-++|++|..+...++....... .....
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~ 224 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKD 224 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccch
Confidence 344466677777778999999999987766554432 2222322 3345788999999998877654332111 11111
Q ss_pred HH--hhCCCCCCceeHHHHHHHHHhcCCCCCCCHH---HHHHHHHhhCCC-----CCCceeHHHHHHHHH
Q 028812 136 FN--VFDQNGDGFITFDELKSVLGSLGLKQGRTVE---DCKRMIMKVDVD-----GDGMVDYKEFKQMMK 195 (203)
Q Consensus 136 F~--~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~---~~~~~~~~~d~~-----~dg~i~~~eF~~~l~ 195 (203)
|- .-+...--.++..||.++|.....+. ... .++.++..+-.| .+..+++.||+.+|=
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~--~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLIHEQQEH--WASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHHhhhHHH--hhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 11 11222336799999999998765443 222 344445444222 456899999999884
No 142
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=87.17 E-value=2.7 Score=27.47 Aligned_cols=20 Identities=10% Similarity=0.650 Sum_probs=10.3
Q ss_pred hhCCCCCCceeHHHHHHHHH
Q 028812 138 VFDQNGDGFITFDELKSVLG 157 (203)
Q Consensus 138 ~~D~~~~G~Is~~e~~~~l~ 157 (203)
.||+..+.+||.+++++++.
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 34555555555555555543
No 143
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.82 E-value=9.9 Score=33.66 Aligned_cols=137 Identities=14% Similarity=0.151 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHcCCCC-CCcccHHHHHHHHHHh--------CCC--CC---HHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNG-DGRISKKELNDSLENL--------GIY--IP---DVELTQMIERIDVNGDGCVDIDEFGALYK 120 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~-~g~i~~~ef~~~l~~l--------~~~--~~---~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 120 (203)
+..-+..+|..++-.+ +..++..+...+|... |.. .+ .--++.+++.||...+|.|..-+|...+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 4555666777777654 5566666666655432 211 11 12367889999999999999999988775
Q ss_pred HHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHH-------HhcC------CCCCCCHHHHHHHHHhhCCCCCCceeH
Q 028812 121 SIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVL-------GSLG------LKQGRTVEDCKRMIMKVDVDGDGMVDY 187 (203)
Q Consensus 121 ~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l-------~~~~------~~~~~~~~~~~~~~~~~d~~~dg~i~~ 187 (203)
.+ +....++.++.+|+..-.++.-.+ ...|...+ +.+| -.- -+-.++..|.. .++-..|.+
T Consensus 498 ~l-ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN--vepsvrsCF~~--v~~~pei~~ 571 (966)
T KOG4286|consen 498 SL-CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN--IEPSVRSCFQF--VNNKPEIEA 571 (966)
T ss_pred HH-hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC--CChHHHHHHHh--cCCCCcchH
Confidence 54 555567888999999866655443 44443333 3332 111 23346666773 355567999
Q ss_pred HHHHHHHHcC
Q 028812 188 KEFKQMMKGG 197 (203)
Q Consensus 188 ~eF~~~l~~~ 197 (203)
..|+++++..
T Consensus 572 ~~f~dw~~~e 581 (966)
T KOG4286|consen 572 ALFLDWMRLE 581 (966)
T ss_pred HHHHHHhccC
Confidence 9999998754
No 144
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.76 E-value=0.84 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 90 IPDVELTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 90 ~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
+++++++++++.+-.|..|+|.|.||+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57899999999999999999999999987753
No 145
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=13 Score=28.56 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHc-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 028812 54 MDQAELDRVFQMF-DHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIME 124 (203)
Q Consensus 54 ~~~~~~~~~F~~~-D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 124 (203)
.+...+.++|..+ |++.+..|-.+-+..+++.+|+.+..-.+.-+-..++...-|..+.+||+..+..+.+
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~ 132 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGC 132 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCC
Confidence 4567777777665 6666678999999999999999887766666666778888899999999997765543
No 146
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.33 E-value=3.1 Score=35.57 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYI----PDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEE 125 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 125 (203)
.++..-.+-+..+|..+|.|+||.++-.|+..+.......+ ...+. --.+..|.++++-|+..|.....-
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHHhhc
Confidence 34555667888999999999999999999999998764432 11110 112368999999999988654322
Q ss_pred cChHHHHHHHHHhhCCCC
Q 028812 126 KDEEEDMKEAFNVFDQNG 143 (203)
Q Consensus 126 ~~~~~~~~~~F~~~D~~~ 143 (203)
....---.-+|..|..++
T Consensus 382 d~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred cHHHHHHHHHhcCCcccc
Confidence 222222344566665553
No 147
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=85.77 E-value=3 Score=28.84 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-------CCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCC
Q 028812 72 GRISKKELNDSLENLGIYIPDVELTQMIERIDV-------NGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQN 142 (203)
Q Consensus 72 g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~-------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~ 142 (203)
+.|+..||.++-.-..+ +...+..++..|.. +..+.|+|+.|..++...+.....++-.+++|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 56788888776654433 23345555555522 34568999999999988877766667778899988443
No 148
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.32 E-value=0.92 Score=30.08 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 165 RTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 165 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
++|++++.++.++-.|..|++.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 4899999999999999999999999998776
No 149
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.38 E-value=2.3 Score=37.32 Aligned_cols=80 Identities=18% Similarity=0.399 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc---CC---CCCCCHHHHHHHHHhhCCCCCC
Q 028812 110 VDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL---GL---KQGRTVEDCKRMIMKVDVDGDG 183 (203)
Q Consensus 110 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~~---~~~~~~~~~~~~~~~~d~~~dg 183 (203)
++++||. ....+-+..++..|.++|. ++|.++.+++..++... +. -...+.+....++...|.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 6666666 3334455667777777776 77777777776666443 11 0011333445556666777777
Q ss_pred ceeHHHHHHHHHc
Q 028812 184 MVDYKEFKQMMKG 196 (203)
Q Consensus 184 ~i~~~eF~~~l~~ 196 (203)
.+.++++...+..
T Consensus 77 y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 77 YITNEDLEILLLQ 89 (646)
T ss_pred eeeecchhHHHHh
Confidence 7776666665543
No 150
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=83.31 E-value=9.1 Score=29.68 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHH---HHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHH----HHHHHhh
Q 028812 69 NGDGRISKKELNDSLENL--GIYIPDVE---LTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDM----KEAFNVF 139 (203)
Q Consensus 69 ~~~g~i~~~ef~~~l~~l--~~~~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~~F~~~ 139 (203)
..||.|+..|.. +.+.+ ...++.++ +..+|+.- .....++++|+.-+......+ ...+ ..+|..-
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r--~~l~~~lL~~l~~vA 140 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGR--FDLLRMFLEIQIQAA 140 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 358999999997 33333 12335555 45555543 445588999998887654322 2222 3444432
Q ss_pred CCCCCCceeHHH---HHHHHHhcCCCCCCCHHHHHHHHHh
Q 028812 140 DQNGDGFITFDE---LKSVLGSLGLKQGRTVEDCKRMIMK 176 (203)
Q Consensus 140 D~~~~G~Is~~e---~~~~l~~~~~~~~~~~~~~~~~~~~ 176 (203)
-.||.++..| ++++...+|. +..+...+...
T Consensus 141 --~ADG~l~~~E~~~L~~Ia~~Lgi----s~~df~~~~~~ 174 (267)
T PRK09430 141 --FADGSLHPNERQVLYVIAEELGF----SRFQFDQLLRM 174 (267)
T ss_pred --HhcCCCCHHHHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 3568899988 4444455554 55666666554
No 151
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=83.15 E-value=0.68 Score=31.76 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENL--GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMK 133 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l--~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (203)
...+-.+....-. .||.|+.+|...+...+ ....+..+...+...++.-.....++.+++..+...........-+.
T Consensus 23 ~~a~~~ll~~~a~-aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~ 101 (140)
T PF05099_consen 23 REALLALLAAVAK-ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLR 101 (140)
T ss_dssp HHHHHHHHHHHHH-TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHH
Confidence 3334444333322 47899999988777665 23335556666666666555557778888766644322222334556
Q ss_pred HHHHhhCCCCCCceeHHH---HHHHHHhcCCCC
Q 028812 134 EAFNVFDQNGDGFITFDE---LKSVLGSLGLKQ 163 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e---~~~~l~~~~~~~ 163 (203)
.++...-. ||.++..| +.++...+|.+.
T Consensus 102 ~l~~ia~A--DG~~~~~E~~~l~~ia~~L~i~~ 132 (140)
T PF05099_consen 102 MLIAIAYA--DGEISPEEQEFLRRIAEALGISE 132 (140)
T ss_dssp HHHHHCTC--TTC-SCCHHHHHHHHHHHCTS-S
T ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHHHcCCCH
Confidence 66666544 56776666 445555556543
No 152
>PLN02223 phosphoinositide phospholipase C
Probab=83.01 E-value=6.5 Score=33.53 Aligned_cols=69 Identities=6% Similarity=0.053 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHH---HhcCCCCCCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHHHc
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVL---GSLGLKQGRTVEDCKRMIMKVDVD--------GDGMVDYKEFKQMMKG 196 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l---~~~~~~~~~~~~~~~~~~~~~d~~--------~dg~i~~~eF~~~l~~ 196 (203)
..+.++.+|..| ..+.|.++.+.+.+++ ....-....+.++.+.++..+-.. ..+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 357788899988 4778899999999888 555443334677777777654222 2256999999999976
Q ss_pred C
Q 028812 197 G 197 (203)
Q Consensus 197 ~ 197 (203)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 4
No 153
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.91 E-value=7.4 Score=25.12 Aligned_cols=61 Identities=11% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC---CCCCCceeHHHHHHHHHHH
Q 028812 57 AELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERID---VNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 57 ~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d---~~~~g~i~~~ef~~~~~~~ 122 (203)
..+++-|..+-. +|.|....|..|+- +.-+.+...++|..+- .-....|+.+|...+|..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 455666666666 67777777776653 3344555555555431 1113455666655555443
No 154
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=2 Score=34.51 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIP-DVELTQMIERIDVNGDGCVDIDEFGALYK 120 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~-~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 120 (203)
.+++.++|+.+|+.++|.|+..-+..++..++...+ .+.+..+-..+|...-|.|-.++|...+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 688999999999999999999999999999884444 44455555567888888888888776654
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=80.45 E-value=4.8 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=27.4
Q ss_pred HhhCCCCCCceeHHHHHHHHHhc----------CCCCCCCHHHHHHHHHhh
Q 028812 137 NVFDQNGDGFITFDELKSVLGSL----------GLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 137 ~~~D~~~~G~Is~~e~~~~l~~~----------~~~~~~~~~~~~~~~~~~ 177 (203)
+.||+..+.+||.+++++++..- |.++ +...+.+++-+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi--T~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDI--TRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCccc--HHHHHHHHHHHH
Confidence 36899999999999999988652 4444 555565555443
No 156
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.71 E-value=28 Score=31.78 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhcCCCC----CCceeHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENL----------GIYIPDVELTQMIERIDVNG----DGCVDIDEFGALYK 120 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l----------~~~~~~~~~~~i~~~~d~~~----~g~i~~~ef~~~~~ 120 (203)
.+.++.++|..+..+...+++.++|..+|++- ........+..++..+..|. .|.++.+-|+.++.
T Consensus 219 pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 219 PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 45889999999999999999999999999853 23456788999999997764 68899998888775
Q ss_pred H
Q 028812 121 S 121 (203)
Q Consensus 121 ~ 121 (203)
.
T Consensus 299 g 299 (1189)
T KOG1265|consen 299 G 299 (1189)
T ss_pred C
Confidence 4
No 157
>PLN02228 Phosphoinositide phospholipase C
Probab=79.01 E-value=16 Score=31.52 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=51.1
Q ss_pred cCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHHHH
Q 028812 54 MDQAELDRVFQMFDHNGDGRISKKELNDSLENLGI--YIPDVELTQMIERIDVN----GDGCVDIDEFGALYKSI 122 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~--~~~~~~~~~i~~~~d~~----~~g~i~~~ef~~~~~~~ 122 (203)
....++..+|..+-.+ +.++.++|..+|..... ..+.+.+..++..+... ..|.++.+.|..++...
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3568899999998643 57999999999988743 24567788888888543 34679999999988543
No 158
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=77.33 E-value=16 Score=23.41 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh--cccChHHHHHHHHHhhCCCCCCc
Q 028812 70 GDGRISKKELNDSLENLG-IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIM--EEKDEEEDMKEAFNVFDQNGDGF 146 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~-~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~G~ 146 (203)
.||.++..|...+-..+. ..........+...+..-.....++.+|...+.... .......-+..+|..- -.||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA--~ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA--YADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHcCC
Confidence 377888888765444331 222333333444433322222367788877776542 1111233445555543 34688
Q ss_pred eeHHHHH
Q 028812 147 ITFDELK 153 (203)
Q Consensus 147 Is~~e~~ 153 (203)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8887743
No 159
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=76.93 E-value=16 Score=22.98 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 028812 72 GRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSI 122 (203)
Q Consensus 72 g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 122 (203)
..|+.+||..+.++.+.+.+.+++..+...+-.+.-.-.+-++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 358999999999999999999999999998877766666666666666554
No 160
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.77 E-value=3.1 Score=33.47 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHH-HHHhhCCCCCCceeHHHHHHH
Q 028812 129 EEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKR-MIMKVDVDGDGMVDYKEFKQM 193 (203)
Q Consensus 129 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~d~~~dg~i~~~eF~~~ 193 (203)
.+.++++|+.+|..++|+|+.+-++.++.+....+ ++.+... +=...|+.+-|.|-.++|..-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v--se~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV--SEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc--cCHHHHHHhcCccChhhcceEEecccccc
Confidence 57899999999999999999999999999887554 4444333 334457777777776666543
No 161
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=76.45 E-value=15 Score=26.86 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=49.7
Q ss_pred CCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHH-HHHHHHhcCCCCCCCHHHHHHHHHh-hCCCCC
Q 028812 105 NGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDE-LKSVLGSLGLKQGRTVEDCKRMIMK-VDVDGD 182 (203)
Q Consensus 105 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e-~~~~l~~~~~~~~~~~~~~~~~~~~-~d~~~d 182 (203)
|=||+|+.+++...+...... .++..+++ .--+++||..+ |.+++..++.. .+|+.+++.. +-.|
T Consensus 9 DFDGTITl~Ds~~~itdtf~~----~e~k~l~~---~vls~tiS~rd~~g~mf~~i~~s----~~Eile~llk~i~Id-- 75 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP----GEWKALKD---GVLSKTISFRDGFGRMFGSIHSS----LEEILEFLLKDIKID-- 75 (220)
T ss_pred cCCCceEecchhHHHHhccCc----hHHHHHHH---HHhhCceeHHHHHHHHHHhcCCC----HHHHHHHHHhhcccC--
Confidence 347889888888887665433 23334443 33467777666 67777766654 3555444433 3322
Q ss_pred CceeHHHHHHHHHcCCCC
Q 028812 183 GMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 183 g~i~~~eF~~~l~~~~~~ 200 (203)
-.+.+|.++++..+++
T Consensus 76 --p~fKef~e~ike~di~ 91 (220)
T COG4359 76 --PGFKEFVEWIKEHDIP 91 (220)
T ss_pred --ccHHHHHHHHHHcCCC
Confidence 3588888888877764
No 162
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=75.84 E-value=5.9 Score=25.69 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHHHhCC-----CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCC
Q 028812 70 GDGRISKKELNDSLENLGI-----YIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGD 144 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~-----~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 144 (203)
.||.++.+|...+.+.+.. ......+..++...-.+- -..+..++...+...........-+..++... ..|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AAD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hcc
Confidence 3678888888777766531 223344555555442210 13344566666655443222233344445544 345
Q ss_pred CceeHHHH
Q 028812 145 GFITFDEL 152 (203)
Q Consensus 145 G~Is~~e~ 152 (203)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 77777663
No 163
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.68 E-value=15 Score=31.94 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcCC-CCCCceeHHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGI--YIPDVELTQMIERIDV-NGDGCVDIDEFGALYKS 121 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~--~~~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~ 121 (203)
...++..+|..+-. ++.++.++|..+|..... ..+.+.+..|++.+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45689999999864 479999999999988743 3467788888887642 24567999999998865
No 164
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=72.22 E-value=7.1 Score=17.47 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=9.3
Q ss_pred CCCCCCcccHHHHHHH
Q 028812 67 DHNGDGRISKKELNDS 82 (203)
Q Consensus 67 D~~~~g~i~~~ef~~~ 82 (203)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777766665543
No 165
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=72.01 E-value=15 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 150 DELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 150 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+++.++++..|..+ +..++..+++.-+..+--..+-+.+..+|
T Consensus 17 ~~m~~if~l~~~~v--s~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 17 DDMIEIFALAGFEV--SKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred HHHHHHHHHcCCcc--CHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 35666666666666 77777777766443333333444444444
No 166
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.99 E-value=30 Score=30.21 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhcC-------CCCCCceeHHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGI---YIPDVELTQMIERID-------VNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~---~~~~~~~~~i~~~~d-------~~~~g~i~~~ef~~~~~~ 121 (203)
...+++.+|..+-.++ +.++.++|..+|..-.. ..+.+.+..++..+- .-..+.++.+.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5688999999996544 79999999999998753 235666677776442 123456999999998755
No 167
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.62 E-value=18 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=11.3
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 166 TVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 166 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+..++..++.....-+.-.+++..|...|
T Consensus 64 ~~~~l~ali~~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 64 DGEELDALIEAGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444443322222234444444433
No 168
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=69.44 E-value=25 Score=22.05 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 90 IPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 90 ~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
+++.+....+...-.+ .-.|.+.+|...+...-... ...+...+=..+|...+|+||.-||--+.+-.
T Consensus 4 ITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~-~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPIS-SGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--S-SHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCC-chHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3445555555443222 24577777777776653333 22333334446677777777777776555443
No 169
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=68.90 E-value=5.4 Score=25.69 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCceeHHHHHHHHHHHhc-ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCc
Q 028812 106 GDGCVDIDEFGALYKSIME-EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGM 184 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~ 184 (203)
.||.++-.|-..+-..+.. ..........+...+........+..++.+.+.... .......-+..+|..+..| |.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~l~~L~~vA~AD--G~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF-DYEERLELVEALWEVAYAD--GE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhc--CC
Confidence 3888888887665544433 244567778888888777777888888888776543 1101222344455555444 55
Q ss_pred eeHHH
Q 028812 185 VDYKE 189 (203)
Q Consensus 185 i~~~e 189 (203)
++-.|
T Consensus 89 ~~~~E 93 (104)
T cd07313 89 LDEYE 93 (104)
T ss_pred CCHHH
Confidence 65554
No 170
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=67.43 E-value=34 Score=23.68 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=38.1
Q ss_pred CCceeHHHHHHHHHHHhcccChHHHHHHHHH----hhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhC
Q 028812 107 DGCVDIDEFGALYKSIMEEKDEEEDMKEAFN----VFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVD 178 (203)
Q Consensus 107 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~----~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 178 (203)
-+.++-+||..+-.........-..+...|. ..--+..+.|+.+.|+.+|++.-... +.++-+..+|..+-
T Consensus 5 ~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d-~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD-LPEDLCQHLFLSFQ 79 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---HHHHHHHHHHS-
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHh
Confidence 3667888888765443332222333444442 01123456999999999999874332 58888888988873
No 171
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=67.34 E-value=2.1 Score=31.29 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=40.9
Q ss_pred HHhhCCC-CCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 136 FNVFDQN-GDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 136 F~~~D~~-~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
|-.+|.. .||++|..|+.-+-.- +..-+.-+..+|...|.|+||+|+.+|+..++.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCC----cccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 5555654 6999999998654322 212355677889999999999999999987764
No 172
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.13 E-value=5.2 Score=24.10 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 127 DEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 127 ~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
........+...|+.=+.+.|+.+||.+.++.+
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888877788888888888887765
No 173
>COG5562 Phage envelope protein [General function prediction only]
Probab=66.79 E-value=4.8 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 173 MIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 173 ~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
+......+..|..+|+||+..+.++||
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCCe
Confidence 334445678899999999999999987
No 174
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=66.72 E-value=15 Score=18.49 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=22.0
Q ss_pred ceeHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 028812 146 FITFDELKSVLGSLGLKQGRTVEDCKRMIM 175 (203)
Q Consensus 146 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~ 175 (203)
.++..++++.++..|.+......++.+-+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~ 32 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAELVDRLL 32 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 567888999999998887666666655443
No 175
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=66.02 E-value=16 Score=18.50 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=21.4
Q ss_pred ceeHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 028812 146 FITFDELKSVLGSLGLKQGRTVEDCKRMIM 175 (203)
Q Consensus 146 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~ 175 (203)
.++..|+++.++..|.+...+..++.+-+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~ 32 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAELIERLK 32 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHHHHHHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 467888999999998887666666655444
No 176
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=65.33 E-value=37 Score=22.39 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhC
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVD 178 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 178 (203)
+..+|.+.+.-++-..+..+++.+|...|... .++.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~--d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI--DDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc--CHHHHHHHHHHhc
Confidence 34567777778888899999999999999988 8888999998874
No 177
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=63.02 E-value=29 Score=27.30 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHcCC--CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHH
Q 028812 55 DQAELDRVFQMFDH--NGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDM 132 (203)
Q Consensus 55 ~~~~~~~~F~~~D~--~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 132 (203)
-.+++...|...+. +..-..+.+|=.+.....+.......+...+..+|.+.+-.+.=+-|+.++..-+.-...+.++
T Consensus 39 GvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskL 118 (335)
T KOG0113|consen 39 GVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKL 118 (335)
T ss_pred cHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHH
Confidence 45666666765543 3334445555555555555444445577778888888877776677877775555555677888
Q ss_pred HHHHHhhC
Q 028812 133 KEAFNVFD 140 (203)
Q Consensus 133 ~~~F~~~D 140 (203)
+..|..|-
T Consensus 119 rreF~~YG 126 (335)
T KOG0113|consen 119 RREFEKYG 126 (335)
T ss_pred HHHHHhcC
Confidence 88888884
No 178
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=62.72 E-value=54 Score=23.46 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCC---CC--------------
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPD-----VELTQMIERIDVN---GD-------------- 107 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~-----~~~~~i~~~~d~~---~~-------------- 107 (203)
...++-+.++-++|..+-.+ ++-+..+++..++..|..+..- +-++..+..+..+ -+
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~i~~~~~~i~~tn~kq~it~~mi~ 85 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTKDINECIDYYYKFIRSKDVCIEGTNPKQDITLQMIH 85 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHHhHHHHHHHHHHhcccCceeecCcchhHHHHHHHHH
Confidence 45566678888888888654 5668999999999988764321 2233334333211 11
Q ss_pred ---------------CceeHHHHHHHHHHHhcccChHHHHHHHHHhh
Q 028812 108 ---------------GCVDIDEFGALYKSIMEEKDEEEDMKEAFNVF 139 (203)
Q Consensus 108 ---------------g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~ 139 (203)
..|+++..+.....++--..+.+.+...|+.+
T Consensus 86 a~t~s~~~~~~~di~DIVDfdKLl~~t~~LL~FmdN~~~Id~~W~L~ 132 (170)
T PF08730_consen 86 AYTISSSIKNPDDIIDIVDFDKLLRNTYRLLIFMDNEEHIDESWKLF 132 (170)
T ss_pred HhhccccccccccccceeeHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 34677777777766666666777777777766
No 179
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.20 E-value=16 Score=30.19 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCCCceeHHHHHHHHHHHhc---ccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc
Q 028812 105 NGDGCVDIDEFGALYKSIME---EKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 105 ~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~ 159 (203)
.++......||+........ .+-.-+.++.+-+.+|.|.+|.|+++|=..+++.-
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 34555666666654332211 22234788999999999999999999988888653
No 180
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=61.96 E-value=12 Score=22.62 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 028812 73 RISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEE 125 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 125 (203)
-+++..+..++.. .++...+..+...|+.=..+.|+.+||+..+..+.++
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3454555555543 3444445555555544467889999998888776543
No 181
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.31 E-value=22 Score=20.96 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 028812 71 DGRISKKELNDSLENLGIYIPDVELTQMIERI 102 (203)
Q Consensus 71 ~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~ 102 (203)
+--|+.+.++..+.+.|..+++..+.++.+.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34589999999999999999999999988765
No 182
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=15 Score=30.11 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 131 DMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQ 192 (203)
Q Consensus 131 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 192 (203)
....+|-.+. --+|+||...-+..+..... ....+-++|+..|.|.||.++-+||.-
T Consensus 445 ~yde~fy~l~-p~~gk~sg~~ak~~mv~skl----pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLS-PVNGKLSGRNAKKEMVKSKL----PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccc-ccCceeccchhHHHHHhccC----chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3455665553 45788888777666654433 567889999999999999999999964
No 183
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=59.39 E-value=49 Score=21.83 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 59 LDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 59 ~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
+-..|-.++..++...+..+++.+|...|.....+.++.++..+ .|+ +.+|.+.--
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G 58 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHh
Confidence 34456777777888889999999999999999999999999877 444 666665543
No 184
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=58.93 E-value=24 Score=19.02 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=20.4
Q ss_pred HHHHHHHHHcC-C-CCCCcccHHHHHHHHHH
Q 028812 57 AELDRVFQMFD-H-NGDGRISKKELNDSLEN 85 (203)
Q Consensus 57 ~~~~~~F~~~D-~-~~~g~i~~~ef~~~l~~ 85 (203)
..+-.+|..|- . .+...++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45666777774 2 23678999999988875
No 185
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.14 E-value=61 Score=22.56 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=61.5
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHh
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENL--GIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNV 138 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l--~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~ 138 (203)
-+|+.++.| |.++..|......-+ .+.++.+++..+......-+...+++-.|...+...+......+-+...|+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 668877765 567777755543332 4556788888888776655677888899988887665554444556666776
Q ss_pred hCCCCCCceeHHHHHHHH
Q 028812 139 FDQNGDGFITFDELKSVL 156 (203)
Q Consensus 139 ~D~~~~G~Is~~e~~~~l 156 (203)
. ..||.++..|-.-++
T Consensus 112 a--~ADg~l~e~Ed~vi~ 127 (148)
T COG4103 112 A--YADGELDESEDHVIW 127 (148)
T ss_pred H--HccccccHHHHHHHH
Confidence 4 567888887744444
No 186
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.84 E-value=49 Score=21.43 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhh---CCCCCCceeHHHHHHHHHhc
Q 028812 94 ELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVF---DQNGDGFITFDELKSVLGSL 159 (203)
Q Consensus 94 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~---D~~~~G~Is~~e~~~~l~~~ 159 (203)
.++.-|..+-. +|.+....|-.++.- ....+-...+|..+ -.-..+.|+.+|+++++..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM----~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGM----KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCC----cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 34444444433 566666666655421 12233334444433 11124566666666666544
No 187
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.81 E-value=19 Score=29.50 Aligned_cols=61 Identities=21% Similarity=0.441 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGAL 118 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~ 118 (203)
+...+.++|..+.+ -+|+|+-..-+..|... .++...+.+||...|.|+||.++-+||.-+
T Consensus 442 dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 442 DKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CCcchHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44566778887765 46788887777766544 446678888999999999999999988654
No 188
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=57.67 E-value=1e+02 Score=24.95 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 135 AFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 135 ~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
....+|..+.|.+++.-.+-++..+.-.. -.+.++.+|... .|+.|.+.+-.|.++++
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk--~~dklryIfs~i-sds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGK--IKDKLRYIFSLI-SDSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccch--HHHHHHHHHHHH-ccchHHHHHHHHHHHHH
Confidence 45567888888888888888887775433 456777777766 45667666666666654
No 189
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=56.21 E-value=4.6 Score=29.63 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 106 GDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVL 156 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l 156 (203)
.||.++--|..-+-..+.. -+..+...|.-.|.|+||+|+.+|+...+
T Consensus 201 ~d~~~sh~el~pl~ap~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4677777776555433322 23556667777788888888877775544
No 190
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=56.03 E-value=49 Score=20.80 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 73 RISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
.|+..+|+..|...-......+...+-.-+|.-.++.|+.=||-.+.
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 46666666666655433333444455555566666666655554443
No 191
>PRK00523 hypothetical protein; Provisional
Probab=55.96 E-value=39 Score=20.45 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
++.|+.+ ..++-.|+.+-++.++..+|... ++..+.++++.+
T Consensus 27 rk~~~k~-l~~NPpine~mir~M~~QMGqKP--Sekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQ-IRENPPITENMIRAMYMQMGRKP--SESQIKQVMRSV 68 (72)
T ss_pred HHHHHHH-HHHCcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 3445544 34567899999999999999998 999999998876
No 192
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=55.16 E-value=28 Score=20.20 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 028812 72 GRISKKELNDSLENLGIYIPDVELTQMIERI 102 (203)
Q Consensus 72 g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~ 102 (203)
..+|.+|+...+..++..++..++-.||..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578888888888888888888887777654
No 193
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.73 E-value=43 Score=19.79 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 142 NGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 142 ~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
.++-.|+.+.++.++..+|... ++..+.++++.+
T Consensus 27 ~~NPpine~mir~M~~QMG~kp--Sekqi~Q~m~~m 60 (64)
T PF03672_consen 27 KENPPINEKMIRAMMMQMGRKP--SEKQIKQMMRSM 60 (64)
T ss_pred HHCCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 3467899999999999999998 999999988765
No 194
>PRK00523 hypothetical protein; Provisional
Probab=53.59 E-value=33 Score=20.78 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 028812 71 DGRISKKELNDSLENLGIYIPDVELTQMIERI 102 (203)
Q Consensus 71 ~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~ 102 (203)
+--|+.+-++..+.+.|..+++..++++.+.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34589999999999999999999999998876
No 195
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=52.97 E-value=96 Score=25.05 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=82.2
Q ss_pred cCHHHHHHHHHHcC---CCCCCcccHHHHHHHHHHh----CCCC------CH-----HHHHHHHHhcCCCCCCceeHHHH
Q 028812 54 MDQAELDRVFQMFD---HNGDGRISKKELNDSLENL----GIYI------PD-----VELTQMIERIDVNGDGCVDIDEF 115 (203)
Q Consensus 54 ~~~~~~~~~F~~~D---~~~~g~i~~~ef~~~l~~l----~~~~------~~-----~~~~~i~~~~d~~~~g~i~~~ef 115 (203)
.++..+-++|+.-. .+.+-.|...-+...+... +..+ .. ..+..++..+|..+.|.++.-..
T Consensus 53 vdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~g~~~vfav 132 (434)
T KOG4301|consen 53 VDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAV 132 (434)
T ss_pred HHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCCCCceeecc
Confidence 35555666665543 2345556666666555433 2111 11 12445666789999998876554
Q ss_pred HHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhc---------CCCCCCCHHHHHHHHHhhCCCCCCcee
Q 028812 116 GALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSL---------GLKQGRTVEDCKRMIMKVDVDGDGMVD 186 (203)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---------~~~~~~~~~~~~~~~~~~d~~~dg~i~ 186 (203)
...+. .++.+.-.++++.+|... .|.+|.+..-.+.+++.+. |...+.++..++..|. .+.+++
T Consensus 133 kiala-tlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf~-----qqrKv~ 205 (434)
T KOG4301|consen 133 KIALA-TLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCFL-----QQRKVE 205 (434)
T ss_pred hhhhh-hhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHHH-----HHHHHH
Confidence 44443 335544568899999998 4778888877777777653 2222223444444443 345678
Q ss_pred HHHHHHHHHcCCC
Q 028812 187 YKEFKQMMKGGGF 199 (203)
Q Consensus 187 ~~eF~~~l~~~~~ 199 (203)
.+.|.+.|..++-
T Consensus 206 Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 206 LNQFLDTLMSDPP 218 (434)
T ss_pred HHHHHHHHhcCCC
Confidence 8888887776653
No 196
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.14 E-value=18 Score=35.33 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=52.8
Q ss_pred CCCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 028812 50 TRSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIP----DVELTQMIERIDVNGDGCVDIDEFGALYKS 121 (203)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~----~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 121 (203)
.+++-+.++++++|..+|++..|.|...++...++.+..++. ... +.+--.+....+|.|++.+-+.++..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 577778999999999999999999999999999998744321 111 22222334557889998888777654
No 197
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.70 E-value=41 Score=20.21 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 028812 71 DGRISKKELNDSLENLGIYIPDVELTQMIERI 102 (203)
Q Consensus 71 ~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~ 102 (203)
+--|+.+.++..+.+.|..+++..++++++.+
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44589999999999999999999999988765
No 198
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=50.87 E-value=50 Score=21.29 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHH
Q 028812 74 ISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMK 133 (203)
Q Consensus 74 i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (203)
|...+..-++.-+...++.+++.++...+-.++....+-.+.-..+..........+.+.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~ 79 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIE 79 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHH
Confidence 555666666666666666666666666554444433344444444444444443444333
No 199
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=49.81 E-value=57 Score=20.41 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHhCCC-----CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCC
Q 028812 71 DGRISKKELNDSLENLGIY-----IPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDG 145 (203)
Q Consensus 71 ~g~i~~~ef~~~l~~l~~~-----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G 145 (203)
||.|+.+|...+...+... .....+..++...-.+ ..+...+...............-+..++... ..||
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia--~aDG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVA--LADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hhcc
Confidence 7788888877766554221 1223333334332211 2234444444433322122223344444443 4557
Q ss_pred ceeHHHHH
Q 028812 146 FITFDELK 153 (203)
Q Consensus 146 ~Is~~e~~ 153 (203)
.++..|..
T Consensus 88 ~~~~~E~~ 95 (104)
T cd07177 88 ELDPEERA 95 (104)
T ss_pred CCCHHHHH
Confidence 77766643
No 200
>PLN02223 phosphoinositide phospholipase C
Probab=49.34 E-value=1.1e+02 Score=26.50 Aligned_cols=66 Identities=9% Similarity=0.012 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhcCCC--------CCCceeHHHHHHHHHH
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSL---ENLG--IYIPDVELTQMIERIDVN--------GDGCVDIDEFGALYKS 121 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l---~~l~--~~~~~~~~~~i~~~~d~~--------~~g~i~~~ef~~~~~~ 121 (203)
...+++.+|..+- .+.|.++.+.+.+++ .... ...+.++++.+++.+-.. ..+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4578999999994 567889999999988 3332 245666777777654222 2366999999988855
No 201
>PRK01844 hypothetical protein; Provisional
Probab=49.02 E-value=56 Score=19.77 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
++.|+.+ ..++-.|+.+-++.++..+|... ++..+.++++.+
T Consensus 26 rk~~~k~-lk~NPpine~mir~Mm~QMGqkP--Sekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNY-LQKNPPINEQMLKMMMMQMGQKP--SQKKINQMMSAM 67 (72)
T ss_pred HHHHHHH-HHHCCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 4445544 34567899999999999999998 999999998876
No 202
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.96 E-value=58 Score=19.58 Aligned_cols=43 Identities=7% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhC
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVD 178 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 178 (203)
++.+..+ .-++-.|+.+-++.++..+|.+. ++..+.++++.+.
T Consensus 26 rk~~~k~-lk~NPpine~~iR~M~~qmGqKp--Se~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQ-LKDNPPINEEMIRMMMAQMGQKP--SEKKINQVMRSII 68 (71)
T ss_pred HHHHHHH-HhhCCCCCHHHHHHHHHHhCCCc--hHHHHHHHHHHHH
Confidence 4445544 34467899999999999999998 9999999988764
No 203
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=48.79 E-value=1.6e+02 Score=24.48 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCc---
Q 028812 70 GDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGF--- 146 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~--- 146 (203)
....|.+.+|+++|.........-+...+-.-+|...++.|+-=||-.+...+..- ..+.+-|+.+-..+-|+
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw----~tllkNWq~LavtHPGYmAF 262 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW----KTLLKNWQTLAVTHPGYMAF 262 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH----HHHHHhhhhhhccCCceeEE
Confidence 35579999999999987655555566677778899999988766665443332111 44555566666777776
Q ss_pred eeHHHHHHHHHhc
Q 028812 147 ITFDELKSVLGSL 159 (203)
Q Consensus 147 Is~~e~~~~l~~~ 159 (203)
+|.+|++.-+.++
T Consensus 263 LTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 263 LTYDEVKARLQKY 275 (563)
T ss_pred eeHHHHHHHHHHH
Confidence 6889998888775
No 204
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=48.57 E-value=91 Score=21.73 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHH----------HhhCCCCCCceeHHHHHHHH
Q 028812 152 LKSVLGSLGLKQGRTVEDCKRMI----------MKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~----------~~~d~~~dg~i~~~eF~~~l 194 (203)
+.+-++++|+.+ +++|+.+++ ..+-.+..|.++...|.+++
T Consensus 95 l~~e~eklGi~V--s~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGITV--SDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCCcc--CHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 444455566665 666666665 11224578888888877653
No 205
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=47.67 E-value=93 Score=21.92 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCC----CC-CcccHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh----
Q 028812 57 AELDRVFQMFDHN----GD-GRISKKELNDSLENLG----IYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIM---- 123 (203)
Q Consensus 57 ~~~~~~F~~~D~~----~~-g~i~~~ef~~~l~~l~----~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~---- 123 (203)
..+++.|+.|-.- .+ ..++-.++-.++...+ ..++.-...-.|..+-...-+.++|++|...+..+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 4455555555332 23 3466677778887653 345555666678777777778999999988776553
Q ss_pred cccChHHHHHHHHHhh
Q 028812 124 EEKDEEEDMKEAFNVF 139 (203)
Q Consensus 124 ~~~~~~~~~~~~F~~~ 139 (203)
..++.++.+..+.+.+
T Consensus 92 k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLL 107 (180)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 2234455666666555
No 206
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=47.56 E-value=46 Score=26.82 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 144 DGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 144 ~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
.|.||++|-.+.++...... .++.++.+++.++ ||-+||..++
T Consensus 300 ~G~itReeal~~v~~~d~~~--~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEF--PKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccc--cHHHHHHHHHHhC------CCHHHHHHHh
Confidence 68888888877777742222 4567777777774 7777887765
No 207
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=47.34 E-value=74 Score=20.38 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHH
Q 028812 56 QAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEA 135 (203)
Q Consensus 56 ~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 135 (203)
.+.+...|..+-. .|...+++.+.+.+|. +..++..+-...- + +.+.-.. .
T Consensus 3 ~~~l~~~f~~i~~----~V~~~~Wk~laR~LGL--se~~I~~i~~~~~----~--~~eq~~q-----------------m 53 (96)
T cd08315 3 QETLRRSFDHFIK----EVPFDSWNRLMRQLGL--SENEIDVAKANER----V--TREQLYQ-----------------M 53 (96)
T ss_pred HhHHHHHHHHHHH----HCCHHHHHHHHHHcCC--CHHHHHHHHHHCC----C--CHHHHHH-----------------H
Confidence 4667777777643 3788899999999986 7777776654321 1 1222222 2
Q ss_pred HHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 028812 136 FNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMI 174 (203)
Q Consensus 136 F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~ 174 (203)
+..+=......=|...+..+|..++... ..+.+...+
T Consensus 54 L~~W~~~~G~~At~~~L~~aL~~~~~~~--~Ae~I~~~l 90 (96)
T cd08315 54 LLTWVNKTGRKASVNTLLDALEAIGLRL--AKESIQDEL 90 (96)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHccccc--HHHHHHHHH
Confidence 2222111112345777888888888776 666665543
No 208
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=46.79 E-value=48 Score=29.62 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 028812 130 EDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMK 195 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 195 (203)
...+.+|+..-..+.-.+..+.+..++ .+++.+..+..++...+..|+++.|.++..
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~---------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv 460 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM---------GDEEAERAFSLFEGASDENITRSSFKEWIV 460 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC---------CHHHHHHHHHhhhhhcccCccHHHHHHHHH
Confidence 456778999888888888888887775 678888888888887777799999988764
No 209
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=46.58 E-value=75 Score=21.31 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCc-eeHHHHHHHHHc
Q 028812 141 QNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGM-VDYKEFKQMMKG 196 (203)
Q Consensus 141 ~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~-i~~~eF~~~l~~ 196 (203)
.|++.....--...+|..-|..+..+++++.++...+-. |. ++.+++.+|+++
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~---~~~~~~e~i~~wl~~ 121 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVAT---GETISVESLADWLRR 121 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHC---CCCCCHHHHHHHHhC
Confidence 456666666666677777888876778888888777743 44 899999998863
No 210
>PHA02105 hypothetical protein
Probab=46.58 E-value=50 Score=18.96 Aligned_cols=48 Identities=8% Similarity=0.112 Sum_probs=29.5
Q ss_pred cccHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCC--CceeHHHHHHHHH
Q 028812 73 RISKKELNDSLENLG---IYIPDVELTQMIERIDVNGD--GCVDIDEFGALYK 120 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~---~~~~~~~~~~i~~~~d~~~~--g~i~~~ef~~~~~ 120 (203)
+++.+||..++.+.. +++..+.++++-..|....- -.++|+||-.++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 467788888877543 34455555555555543332 3578888877664
No 211
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.41 E-value=35 Score=20.16 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCC
Q 028812 142 NGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDG 181 (203)
Q Consensus 142 ~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 181 (203)
+.++.++..++.+.+...|..+ +++.+...++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~--se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEEL--SEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhh--hHHHHHHHHHHHHHCC
Confidence 3567899999999998888877 8889999888887664
No 212
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=44.38 E-value=79 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=19.9
Q ss_pred ceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 146 FITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 146 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
.||.+||....+..+.++ ++...+.++..+
T Consensus 14 ~iT~~eLlkyskqy~i~i--t~~QA~~I~~~l 43 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI--TKKQAEQIANIL 43 (85)
T ss_pred cCCHHHHHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 566677777777766666 666666666655
No 213
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=44.28 E-value=35 Score=26.48 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=60.1
Q ss_pred cCHHHHHHHHHHcCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHH
Q 028812 54 MDQAELDRVFQMFDHN--GDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEED 131 (203)
Q Consensus 54 ~~~~~~~~~F~~~D~~--~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 131 (203)
-+-+.+..++..|..+ ....++.+|..+.-.-+.--.....++.++..+-..+--..+..+|...+..+
T Consensus 61 pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~i--------- 131 (265)
T PF09412_consen 61 PTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKNI--------- 131 (265)
T ss_dssp STHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh---------
Confidence 3556677788777554 34567777666544433322344455555554433333556788888877655
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQ 192 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 192 (203)
.|..|... .|.++..-|..++.-.-.+. ...=+-.+++.+-..+.|+|+|..|..
T Consensus 132 ---WF~~Y~R~-~~~~dSSGFEHVFvGE~k~~--~V~G~HNWi~fy~~Ek~g~~dY~Gy~~ 186 (265)
T PF09412_consen 132 ---WFGLYSRG-SGGLDSSGFEHVFVGEIKGG--EVSGFHNWIQFYLQEKSGNVDYKGYIK 186 (265)
T ss_dssp ---HTS-B-SS-TTS--B-HHHHHTTS-SSTT--S------HHHHHHHHHTTSEEEEEE--
T ss_pred ---CCccccCC-CCCCCCcccceeeeeeecCC--eEeeeEHHHHHHHHHhcCCceEEEEEe
Confidence 77777443 44477777777764321111 222344555555555667677655443
No 214
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.22 E-value=53 Score=17.78 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 028812 76 KKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGA 117 (203)
Q Consensus 76 ~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~ 117 (203)
.+|...+|..+|+ +..++..+...... ...++.++.+.
T Consensus 3 ~~d~~~AL~~LGy--~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLGY--SKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 3577788888888 66777777776643 33344555443
No 215
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=43.74 E-value=56 Score=23.85 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=19.9
Q ss_pred CCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 140 DQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 140 D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
..+.+|++..+|+.+.+..-+... +.+++.+++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~--t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWV--TEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCC--CHHHHHHHHhhC
Confidence 456778888888877777765554 677777777653
No 216
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=41.87 E-value=76 Score=18.94 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 028812 75 SKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 75 ~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
+-+++..++..-+..++..++..++..-|..+--..+-+.+..++
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 345566666666666677777776666544433334434333333
No 217
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=41.54 E-value=53 Score=27.78 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=40.6
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh---CC-----CCCCceeHHHHHHHHH
Q 028812 134 EAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV---DV-----DGDGMVDYKEFKQMMK 195 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---d~-----~~dg~i~~~eF~~~l~ 195 (203)
-+|..|-.-.++.++..-|..+|+..|+.. ++.-+.+++..+ |. ...+.++.+.|.+++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrt--sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRT--SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCc--CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 356666444568888888888888888876 666666665443 32 1234678888887764
No 218
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=40.78 E-value=41 Score=26.09 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCCceeHHHHHHHHHHHh-cccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHH----HHHHHhhCCC
Q 028812 106 GDGCVDIDEFGALYKSIM-EEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDC----KRMIMKVDVD 180 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~----~~~~~~~d~~ 180 (203)
-||.|+-.|.. ....++ ......+.-..+...|..-+....+.+++.+.++..... ..+.+ ..+|..+-.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~---r~~l~~~lL~~l~~vA~A- 142 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGG---RFDLLRMFLEIQIQAAFA- 142 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHh-
Confidence 48888888877 444433 223345555667788877777777777777777654321 22333 444565554
Q ss_pred CCCceeHHH
Q 028812 181 GDGMVDYKE 189 (203)
Q Consensus 181 ~dg~i~~~e 189 (203)
||.++-.|
T Consensus 143 -DG~l~~~E 150 (267)
T PRK09430 143 -DGSLHPNE 150 (267)
T ss_pred -cCCCCHHH
Confidence 46566555
No 219
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.75 E-value=95 Score=27.56 Aligned_cols=79 Identities=27% Similarity=0.305 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccC-------hHHHHHHHHHhhCCCCCCc
Q 028812 74 ISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKD-------EEEDMKEAFNVFDQNGDGF 146 (203)
Q Consensus 74 i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-------~~~~~~~~F~~~D~~~~G~ 146 (203)
|+.+|+. .-....+..++.+|..+|. .+|.++-+++..++........ ..+....++...|.+..|+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5555555 1112233445555555555 5666666666555443322211 1233455566667777777
Q ss_pred eeHHHHHHHHHh
Q 028812 147 ITFDELKSVLGS 158 (203)
Q Consensus 147 Is~~e~~~~l~~ 158 (203)
+..+++...+..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 777777666653
No 220
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=39.93 E-value=36 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=14.4
Q ss_pred HhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 157 GSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
+..|... ++++++..+..+-..+ | +|.++|...+.+.|+
T Consensus 61 k~~gI~v--sd~evd~~i~~ia~~n-~-ls~~ql~~~L~~~G~ 99 (118)
T PF09312_consen 61 KRLGIKV--SDEEVDEAIANIAKQN-N-LSVEQLRQQLEQQGI 99 (118)
T ss_dssp HHCT------HHHHHHHHHHHHHHT-T---HHHHHHHCHHCT-
T ss_pred HHcCCCC--CHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHcCC
Confidence 3345444 5555555554442111 1 344555555444443
No 221
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=39.13 E-value=43 Score=20.64 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=18.9
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhC
Q 028812 143 GDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVD 178 (203)
Q Consensus 143 ~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d 178 (203)
..|+||.+++..+|..... +.+.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~~----~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDL----DPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccCC----CHHHHHHHHHHHH
Confidence 5688888888888864432 5677777776653
No 222
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=36.04 E-value=1.3e+02 Score=19.99 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQ 192 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 192 (203)
..+|.+.-.-++..+|.+++..++...|..+ ....+..+++.+. | .+.+|.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveV--d~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADV--EDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHc----C-CCHHHHHH
Confidence 3455555566777899999999999999887 6677777777773 2 45566554
No 223
>CHL00091 apcE phycobillisome linker protein
Probab=35.99 E-value=1.2e+02 Score=27.90 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=47.3
Q ss_pred CCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCC-CceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC----
Q 028812 106 GDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGD-GFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVD---- 180 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~---- 180 (203)
.+|.|+..||+..+..- +..++.| |+.... ..|.. -++++| |... ...+|+...+..+...
T Consensus 304 rnG~IsVReFIR~LakS-------~~Yr~~f--~~~~~~~R~IEl-~fkhlL---GR~p-~~~~E~~~~~~i~a~~G~~a 369 (877)
T CHL00091 304 KNGQISIKEFIRALGKS-------EIYRKQF--YEPFVNSRVLEL-AFRHFL---GRGP-SSLEEFQKYFAILSSRGLDG 369 (877)
T ss_pred hcCCccHHHHHHHHhcc-------HHHHHHh--ccCCCcchhHHH-Hhhhhc---CCCC-CCHHHHHHHHHHHHccCcce
Confidence 47899999999887542 3333333 222221 11111 133332 3332 3567777777665433
Q ss_pred -CCCceeHHHHHHHHHcCCCCCC
Q 028812 181 -GDGMVDYKEFKQMMKGGGFSAL 202 (203)
Q Consensus 181 -~dg~i~~~eF~~~l~~~~~~~~ 202 (203)
-|..|+=+||.+.+....|++.
T Consensus 370 ~IDsliDS~EY~~~FGedtVPY~ 392 (877)
T CHL00091 370 LVDALLNSKEYADYFGEETVPYL 392 (877)
T ss_pred eehhhcCcHHHHHhcCCCcCCcc
Confidence 3567788888888888777654
No 224
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=35.76 E-value=54 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=11.4
Q ss_pred HHHHhcCCCCCCceeHHHHHHHH
Q 028812 97 QMIERIDVNGDGCVDIDEFGALY 119 (203)
Q Consensus 97 ~i~~~~d~~~~g~i~~~ef~~~~ 119 (203)
.+++.||.+++|.|..-+|..++
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHhCCCCCCeeehhHHHHHH
Confidence 34555666666666666655544
No 225
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=35.64 E-value=1.5e+02 Score=26.82 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh------------cc
Q 028812 58 ELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIM------------EE 125 (203)
Q Consensus 58 ~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~------------~~ 125 (203)
.+.-+++.||+..+|.|..-+|+-.+-.+.....++.+..+|...-.+++..+ ...|-.++.... ..
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 34566789999999999999999988888777778888899999877666655 444544443221 12
Q ss_pred cChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 126 KDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 126 ~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
...+..++..|.. .++.-.|+..+|...+..
T Consensus 550 sNvepsvrsCF~~--v~~~pei~~~~f~dw~~~ 580 (966)
T KOG4286|consen 550 SNIEPSVRSCFQF--VNNKPEIEAALFLDWMRL 580 (966)
T ss_pred CCCChHHHHHHHh--cCCCCcchHHHHHHHhcc
Confidence 2335668888884 356667777777666543
No 226
>PHA03155 hypothetical protein; Provisional
Probab=35.31 E-value=1.4e+02 Score=19.93 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHH
Q 028812 73 RISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDEL 152 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~ 152 (203)
..+.+|+..-+..|.. ....+..-+..-...+++.++-.+=-.++..... ......-+++-.....+-.+.+|.+|+
T Consensus 7 ~~tvEeLaaeL~kL~~--ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~-~Lt~~A~~KIe~kVrk~~~~~vTk~q~ 83 (115)
T PHA03155 7 CADVEELEKELQKLKI--ENKALKKKLLQHGNPEDELLTPAQKDAIINSLVN-KLTKKAEEKIRERVLKDLLPLVSKNQC 83 (115)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHccCCCCccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 4677788777776643 3334444444333355676766554433333211 112234455666666677788889999
Q ss_pred HHHHHhcCCCCCCCHHHH
Q 028812 153 KSVLGSLGLKQGRTVEDC 170 (203)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~ 170 (203)
.+++..+.+.++.+-++.
T Consensus 84 ~~al~~lt~RidvSmde~ 101 (115)
T PHA03155 84 MEAIADIKYRIDVSIDES 101 (115)
T ss_pred HHHHhcCeeeEEecccch
Confidence 998888766554444443
No 227
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.22 E-value=1.1e+02 Score=25.96 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=44.5
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc---CC-----CCCCceeHHHHHHHHH
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERI---DV-----NGDGCVDIDEFGALYK 120 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~---d~-----~~~g~i~~~ef~~~~~ 120 (203)
-+|..+-...++.++.-.|..+|+..|..-+...+..++..+ |. ...+.++.+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 357777666689999999999999999877776666666544 32 2356788888887753
No 228
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.80 E-value=40 Score=16.78 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.4
Q ss_pred CceeHHHHHHHHH
Q 028812 183 GMVDYKEFKQMMK 195 (203)
Q Consensus 183 g~i~~~eF~~~l~ 195 (203)
|.|++++++++..
T Consensus 3 ~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 3 GTISKEEYLDMAS 15 (33)
T ss_pred ceecHHHHHHHHH
Confidence 5566666665543
No 229
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.44 E-value=2.5e+02 Score=23.96 Aligned_cols=95 Identities=17% Similarity=0.295 Sum_probs=58.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccCh--
Q 028812 51 RSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDE-- 128 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-- 128 (203)
++..+.-.+.-+|+..|.++--.||..+++.++.-++.+ -.++-.. -|.|+-...-.+...+..-...
T Consensus 122 LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~-----~~e~~~~-----yG~is~aS~gaI~R~ll~LE~qG~ 191 (502)
T PF05872_consen 122 LNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN-----AKELSAE-----YGNISSASIGAIQRALLVLEQQGG 191 (502)
T ss_pred cchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh-----HHHHHHH-----cCCccHHHHHHHHHHHHHHHHcch
Confidence 444567788889999999999999999999999876331 2233332 3666666655555443221100
Q ss_pred -------HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 129 -------EEDMKEAFNVFDQNGDGFITFDELKSVL 156 (203)
Q Consensus 129 -------~~~~~~~F~~~D~~~~G~Is~~e~~~~l 156 (203)
.-.+.. |-..|.++.|.|+.-+..+++
T Consensus 192 d~FFGEPaldi~D-l~r~~~~GrG~IniL~a~~l~ 225 (502)
T PF05872_consen 192 DQFFGEPALDIED-LMRTDADGRGVINILAADKLM 225 (502)
T ss_pred HhhCCCccCCHHH-HhccCCCCCEEEEEEEhHhhh
Confidence 001222 333477899999876655544
No 230
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=34.32 E-value=1e+02 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 028812 67 DHNGDGRISKKELNDSLENLGIYIPDVELTQMIERID 103 (203)
Q Consensus 67 D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d 103 (203)
..|.+|.++.+++.+.++.-+...+.+.+.++...-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 3567889999999888875555678888887776433
No 231
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=33.93 E-value=1e+02 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=9.8
Q ss_pred CCCCCceeHHHHHHHHH
Q 028812 104 VNGDGCVDIDEFGALYK 120 (203)
Q Consensus 104 ~~~~g~i~~~ef~~~~~ 120 (203)
.|.+|.++.++++....
T Consensus 28 ld~~G~v~v~~Ll~~~~ 44 (179)
T PRK00819 28 LDEEGWVDIDALIEALA 44 (179)
T ss_pred cCCCCCEEHHHHHHHHH
Confidence 35566666666665543
No 232
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=33.91 E-value=58 Score=22.42 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=16.6
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhhC-CCCCCceeHHHHHHHHHcCCCC
Q 028812 153 KSVLGSLGLKQGRTVEDCKRMIMKVD-VDGDGMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~d-~~~dg~i~~~eF~~~l~~~~~~ 200 (203)
....+..|..+ +++++++.+...- ...+|..+-+.|.+++...|+.
T Consensus 90 ~q~A~~~gi~v--sd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t 136 (154)
T PF13624_consen 90 LQEAKKLGISV--SDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT 136 (154)
T ss_dssp HHHHHHTT------HHHHHHHHHH--HHHHH----HHHHHHHHH-----
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc
Confidence 33334455555 6666666655520 0012556666676666666553
No 233
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.33 E-value=1.2e+02 Score=18.90 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=7.4
Q ss_pred HHHHHHHHhhCCCCCC
Q 028812 130 EDMKEAFNVFDQNGDG 145 (203)
Q Consensus 130 ~~~~~~F~~~D~~~~G 145 (203)
.++..+|+.|..+++-
T Consensus 59 ~EL~EA~rl~~~n~~~ 74 (83)
T cd06404 59 MELEEAFRLYELNKDS 74 (83)
T ss_pred HHHHHHHHHHHhcCcc
Confidence 4444455544444443
No 234
>PF14178 YppF: YppF-like protein
Probab=32.56 E-value=1.1e+02 Score=17.86 Aligned_cols=27 Identities=11% Similarity=0.389 Sum_probs=12.2
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 028812 166 TVEDCKRMIMKVDVDGDGMVDYKEFKQMM 194 (203)
Q Consensus 166 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 194 (203)
+.+++-++.+..... |.|+..||.+.+
T Consensus 20 ~~NeLLDFar~~Yi~--gei~i~eYR~lv 46 (60)
T PF14178_consen 20 DMNELLDFARKLYIQ--GEISINEYRNLV 46 (60)
T ss_pred cHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 344444444444333 345555554444
No 235
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=32.21 E-value=55 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.359 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q 028812 73 RISKKELNDSLENLGIYIPDVELTQ 97 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~~~~~~~~~~~ 97 (203)
.|+.++|..+|+.....++.+++.+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4889999999998877777777665
No 236
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=32.10 E-value=91 Score=22.73 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 028812 67 DHNGDGRISKKELNDSLENLGIYIPDVELTQMIERID 103 (203)
Q Consensus 67 D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d 103 (203)
..+.+|.++.+++.+.+..-+...+.+++.++...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4567889999999888887666677888888877643
No 237
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.90 E-value=1e+02 Score=18.49 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhc
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENL----GIYIPDVELTQMIERI 102 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l----~~~~~~~~~~~i~~~~ 102 (203)
.+...++.+..-.+=..+++.++..+ |...+++.++.||+.|
T Consensus 27 ~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 27 DALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 33333343333334445555555544 4455556666666544
No 238
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=31.32 E-value=2.1e+02 Score=20.80 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=28.4
Q ss_pred hCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 139 FDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 139 ~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
+..+....+|.++|.+.++......+++++.+..++..+
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 180 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSI 180 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 345556788999998888877554445888888888765
No 239
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.12 E-value=69 Score=19.42 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=12.8
Q ss_pred CCCcccHHHHHHHHHH
Q 028812 70 GDGRISKKELNDSLEN 85 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~ 85 (203)
..|++..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4788999999888764
No 240
>PRK08181 transposase; Validated
Probab=30.99 E-value=2.6e+02 Score=21.78 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHH-----------HHHHHhh
Q 028812 71 DGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDM-----------KEAFNVF 139 (203)
Q Consensus 71 ~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~-----------~~~F~~~ 139 (203)
.+.|+.+.+...++.+..+--.+.+..+.... ..+.++|.||+..+...-........+ ...|..|
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~~~tle~f 80 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDSF 80 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHhhC
Confidence 45788888999999887754444455544432 346689999998874432111111111 1236777
Q ss_pred CCCCCCceeHHHHHHH
Q 028812 140 DQNGDGFITFDELKSV 155 (203)
Q Consensus 140 D~~~~G~Is~~e~~~~ 155 (203)
|.+..-.++...+...
T Consensus 81 d~~~~~~~~~~~~~~L 96 (269)
T PRK08181 81 DFEAVPMVSKAQVMAI 96 (269)
T ss_pred CccCCCCCCHHHHHHH
Confidence 7666555666555443
No 241
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=30.83 E-value=1.5e+02 Score=19.08 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHH
Q 028812 73 RISKKELNDSLENLGIYIPDVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDEL 152 (203)
Q Consensus 73 ~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~ 152 (203)
.|...+++++.+.+|. ++.+++.+-.....| ..+.-..++... .... ...=+...+
T Consensus 17 ~~~~~~wK~faR~lgl--se~~Id~I~~~~~~d-----~~Eq~~qmL~~W-------------~~~~----G~~a~~~~L 72 (97)
T cd08316 17 VMTLKDVKKFVRKSGL--SEPKIDEIKLDNPQD-----TAEQKVQLLRAW-------------YQSH----GKTGAYRTL 72 (97)
T ss_pred HcCHHHHHHHHHHcCC--CHHHHHHHHHcCCCC-----hHHHHHHHHHHH-------------HHHh----CCCchHHHH
Confidence 4677888888888876 666777665433221 123322222211 1111 112235777
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHH
Q 028812 153 KSVLGSLGLKQGRTVEDCKRMIM 175 (203)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~ 175 (203)
...|+.++... ..+.+..++.
T Consensus 73 i~aLr~~~l~~--~Ad~I~~~l~ 93 (97)
T cd08316 73 IKTLRKAKLCT--KADKIQDIIE 93 (97)
T ss_pred HHHHHHccchh--HHHHHHHHHH
Confidence 78888888776 6666666654
No 242
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=30.13 E-value=1.5e+02 Score=18.89 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=35.6
Q ss_pred HHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHH---HHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 136 FNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCK---RMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 136 F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
|...|.. ....+.+++.+++...+... ++-+. ..++..+.+....++-+|.+++|.+.+.
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~~~~~---~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~ 88 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKLGLGV---EDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPK 88 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhcCCCH---HHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcC
Confidence 3334433 45677888888887776432 22222 3345554443355788888888887664
No 243
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=29.54 E-value=48 Score=21.53 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=27.3
Q ss_pred CceeHHHHHHHHHhcCCCCCCCHHHH---HHHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 145 GFITFDELKSVLGSLGLKQGRTVEDC---KRMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 145 G~Is~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
..+|.+|+..++...|. ++-+ ...++..+.+....++-++.+++|...+.
T Consensus 34 ~p~s~~eL~~~l~~~g~-----~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~ 86 (105)
T cd03035 34 DGLDAATLERWLAKVGW-----ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPS 86 (105)
T ss_pred CCCCHHHHHHHHHHhCh-----HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcC
Confidence 46777777777776651 1111 12344444332234677777777776653
No 244
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=29.28 E-value=1.2e+02 Score=20.81 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHhCC---------CCCHHHHHHHHHhcCCCCCCc-eeHHHHHHH
Q 028812 70 GDGRISKKELNDSLENLGI---------YIPDVELTQMIERIDVNGDGC-VDIDEFGAL 118 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~---------~~~~~~~~~i~~~~d~~~~g~-i~~~ef~~~ 118 (203)
|+..|+.+||.+++..-.. ..+.+++.++...+...+.+. ++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6678999999988875321 356677777777776655543 777765543
No 245
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=28.81 E-value=2.1e+02 Score=20.13 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q 028812 92 DVELTQMIERIDVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGS 158 (203)
Q Consensus 92 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~ 158 (203)
...+..++..-|.+.+|.|++..|..++...... .+..-|. .+...+|.++++..+..
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd-----WIT~~~L----kh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD-----WITKNFL----KHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhh-----HHHHHHH----hccchhhHHHHHHHHHH
Confidence 3445555554455668899999999998765432 3333332 33567788887777654
No 246
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.37 E-value=42 Score=32.96 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHH-HHHHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 128 EEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVED-CKRMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 128 ~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
+-+....+|..+|.+..|.|...++..+++.+.-++...... .+-+-..+-...+|.|++.+-..++.+..+
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHHhh
Confidence 346788899999999999999999999999885443221111 011222234446777888877777665544
No 247
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=28.28 E-value=1.8e+02 Score=19.20 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=40.3
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 134 EAFNVFDQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 134 ~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
.+|.+.-.-++..+|.+++..++...|..+ ....+..+++.+. | .+.++.+..-..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveV--e~~~~~lf~~~L~----G-Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEV--DDEKLNKVISELE----G-KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHc----C-CCHHHHHHHhHh
Confidence 455555566777999999999999999877 6666777777663 2 566776664443
No 248
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.52 E-value=2.3e+02 Score=21.68 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHhcCCCCC-CceeHHHHHHH
Q 028812 70 GDGRISKKELNDSLENLGI------YIPDVELTQMIERIDVNGD-GCVDIDEFGAL 118 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~------~~~~~~~~~i~~~~d~~~~-g~i~~~ef~~~ 118 (203)
+.|.+..+.+..++..++. .+..+....++..+..|-+ |.|++.|.+.+
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 3566777777777776654 2455666777777888877 77887776543
No 249
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=26.01 E-value=51 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=13.9
Q ss_pred CCCCceeHHHHHHHHHcCCCC
Q 028812 180 DGDGMVDYKEFKQMMKGGGFS 200 (203)
Q Consensus 180 ~~dg~i~~~eF~~~l~~~~~~ 200 (203)
...|.++|.+|++-+.++||.
T Consensus 79 hq~Gqtdf~tfC~~~A~AGI~ 99 (125)
T PF07166_consen 79 HQQGQTDFETFCKDAAKAGIF 99 (125)
T ss_dssp HHHT---HHHHHHHHHHTT--
T ss_pred HHcCCccHHHHHHHHHhcCCE
Confidence 356889999999999999874
No 250
>PRK10026 arsenate reductase; Provisional
Probab=25.71 E-value=67 Score=22.32 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=29.5
Q ss_pred CceeHHHHHHHHHhcCCCCCCCHHHHH---HHHHhhCCCCCCceeHHHHHHHHHcCCC
Q 028812 145 GFITFDELKSVLGSLGLKQGRTVEDCK---RMIMKVDVDGDGMVDYKEFKQMMKGGGF 199 (203)
Q Consensus 145 G~Is~~e~~~~l~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 199 (203)
..+|.+|++.++...|... ++-+. ..++..+.+.+ .++.++.++.|...+.
T Consensus 37 ~ppt~~eL~~~l~~~g~~~---~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~ 90 (141)
T PRK10026 37 TPPTRDELVKLIADMGISV---RALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPI 90 (141)
T ss_pred CCcCHHHHHHHHHhCCCCH---HHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcc
Confidence 4577777877777776431 22222 23555544443 3677777777766553
No 251
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.40 E-value=1.5e+02 Score=17.25 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=3.6
Q ss_pred CCHHHHHHHHH
Q 028812 90 IPDVELTQMIE 100 (203)
Q Consensus 90 ~~~~~~~~i~~ 100 (203)
++.+++..++.
T Consensus 15 Ls~~e~~~~~~ 25 (66)
T PF02885_consen 15 LSREEAKAAFD 25 (66)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33444444333
No 252
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=25.39 E-value=1.3e+02 Score=16.91 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=21.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 028812 70 GDGRISKKELNDSLENLGIYIPDVELTQMI 99 (203)
Q Consensus 70 ~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~ 99 (203)
..|.|+.+||..-+......-+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 468889999888777665555666666655
No 253
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=24.28 E-value=2.8e+02 Score=20.08 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=28.6
Q ss_pred CCCCCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 140 DQNGDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 140 D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
..+....+|.++|.+.++..+....++++.+..++..+
T Consensus 145 n~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 182 (187)
T smart00222 145 NPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSI 182 (187)
T ss_pred CCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 44455689999999998887655555888888888765
No 254
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=23.70 E-value=2.1e+02 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhcCCC
Q 028812 133 KEAFNVFDQNGDGFITFDELKSVLGSLGLK 162 (203)
Q Consensus 133 ~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~ 162 (203)
..+-....-.+--+|+.+++...++..|..
T Consensus 58 ~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 58 EDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 334444455677788888888888877654
No 255
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=23.51 E-value=1.4e+02 Score=16.30 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCccCHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028812 51 RSTMDQAELDRVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIE 100 (203)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~ 100 (203)
.+......++..|.. +...+.++...+...+|. +...+...|.
T Consensus 7 ~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l--~~~qV~~WF~ 49 (59)
T cd00086 7 FTPEQLEELEKEFEK-----NPYPSREEREELAKELGL--TERQVKIWFQ 49 (59)
T ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc--CHHHHHHHHH
Confidence 445556677777776 456788888888777764 5566666554
No 256
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=23.10 E-value=1.7e+02 Score=17.73 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=9.4
Q ss_pred eHHHHHHHHHhcCCCCCCCHHH
Q 028812 148 TFDELKSVLGSLGLKQGRTVED 169 (203)
Q Consensus 148 s~~e~~~~l~~~~~~~~~~~~~ 169 (203)
+..+|...+...|.+...+.++
T Consensus 47 s~~eF~~~L~~~gI~~~~~~ee 68 (76)
T PF03683_consen 47 SRWEFLELLKERGIPINYDEEE 68 (76)
T ss_pred CHHHHHHHHHHCCCCCCCCHHH
Confidence 3444444444444443333333
No 257
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=23.00 E-value=1.9e+02 Score=20.51 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC
Q 028812 113 DEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ 163 (203)
Q Consensus 113 ~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~ 163 (203)
.||+.++..- +-..+...+--+|+.+++..++.++|++-
T Consensus 65 SEfISFvT~E------------AsekC~~EkRKTIngdDllwAm~tLGFe~ 103 (168)
T KOG0869|consen 65 SEFISFVTGE------------ASEKCQREKRKTINGDDLLWAMSTLGFEN 103 (168)
T ss_pred HHHHHHHhhH------------HHHHHHHHhcCcccHHHHHHHHHHcCcHh
Confidence 3666666543 33344456777899999999999998763
No 258
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=22.44 E-value=1.8e+02 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCCceeHHHHHHHHHHHh
Q 028812 106 GDGCVDIDEFGALYKSIM 123 (203)
Q Consensus 106 ~~g~i~~~ef~~~~~~~~ 123 (203)
..|.|+..||...+....
T Consensus 31 ~~~~IT~~e~~~~~k~~~ 48 (287)
T PRK03095 31 KAGDITKDEFYEQMKTQA 48 (287)
T ss_pred cCCcccHHHHHHHHHHHH
Confidence 467999999998886643
No 259
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.42 E-value=1.4e+02 Score=19.85 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred eHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 028812 148 TFDELKSVLGSLGLKQGRTVEDCKRMIMKV 177 (203)
Q Consensus 148 s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 177 (203)
|.+|++.++...+... +++++++++...
T Consensus 81 t~~ElRsIla~e~~~~--s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVML--SDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCC--CHHHHHHHHHHH
Confidence 5678888888887776 888887776654
No 260
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=3.8e+02 Score=20.85 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHhc-CCCCCCceeHHHHHHHHHHHhcccChHHHHHHHHHhhCCCCCCceeHHHHHHHHHhcCCC
Q 028812 88 IYIPDVELTQMIERI-DVNGDGCVDIDEFGALYKSIMEEKDEEEDMKEAFNVFDQNGDGFITFDELKSVLGSLGLK 162 (203)
Q Consensus 88 ~~~~~~~~~~i~~~~-d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~ 162 (203)
.......+..+|..+ |.+.+..|.++-...++..+.....+...+.-+++.- ...-|..+++|+..-+..++..
T Consensus 59 ~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~~d 133 (260)
T KOG3077|consen 59 ARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALGCD 133 (260)
T ss_pred ccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcCCC
Confidence 344556666667665 5655567877777777777655555556666677665 6777888888888877777665
No 261
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=22.33 E-value=4.1e+02 Score=21.29 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCC--CceeHHHHHHHH
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENL-GIYIPDVELTQMIERIDVNGD--GCVDIDEFGALY 119 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l-~~~~~~~~~~~i~~~~d~~~~--g~i~~~ef~~~~ 119 (203)
.....+..+..| ++..+....++++ ...+....+..+|...+.+.. ..++ ++|+.-+
T Consensus 105 ~~i~k~~~~~~~-~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild-~eFl~~v 164 (335)
T PF11867_consen 105 AAIRKLYSDDDG-PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILD-DEFLEEV 164 (335)
T ss_pred HHHHHhccCCCC-CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcC-HHHHHHH
Confidence 334444444444 7778777777765 223333445556655543221 2234 5565544
No 262
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.27 E-value=1.3e+02 Score=15.36 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=12.5
Q ss_pred CHHHHHHHHHhhCCCCCCce-eHHHHHHHHH
Q 028812 166 TVEDCKRMIMKVDVDGDGMV-DYKEFKQMMK 195 (203)
Q Consensus 166 ~~~~~~~~~~~~d~~~dg~i-~~~eF~~~l~ 195 (203)
+++++...+........... +.+++++.++
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 33444444444433333322 4555544443
No 263
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.21 E-value=3.2e+02 Score=20.03 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHcCCCCCCcccHHHHHHHHHHhCCC
Q 028812 55 DQAELDRVFQMFDHNGDGRISKKELNDSLENLGIY 89 (203)
Q Consensus 55 ~~~~~~~~F~~~D~~~~g~i~~~ef~~~l~~l~~~ 89 (203)
-++.++++|..||++.--..+.+++..+|..-|..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 35778888988988887778888888887755543
No 264
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=21.94 E-value=2.3e+02 Score=24.25 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=45.7
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCC-ceeHHHHHHHHHHHhcccChHHHHHHHHHhh
Q 028812 61 RVFQMFDHNGDGRISKKELNDSLENLGIYIPDVELTQMIERIDVNGDG-CVDIDEFGALYKSIMEEKDEEEDMKEAFNVF 139 (203)
Q Consensus 61 ~~F~~~D~~~~g~i~~~ef~~~l~~l~~~~~~~~~~~i~~~~d~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~ 139 (203)
.+|...=..+...++-.+|+.++..+|.....++--+.|. |..++- .+.|..++..+...+.. ...+...|..+
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~--~~a~s~~gv~yl~v~~~i~sel~D---~d~v~~~~~~f 563 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFG--DPAGSVSGVFYLDVLKGIHSELVD---YDLVTRGFTEF 563 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeecc--CCccccccchHHHHHHHHhhhhcC---hhhhhhhHHHH
Confidence 3455444444445899999999999987766554444443 222222 45666666665554443 35566666655
Q ss_pred CCCCCC
Q 028812 140 DQNGDG 145 (203)
Q Consensus 140 D~~~~G 145 (203)
|.=.|+
T Consensus 564 ~diad~ 569 (612)
T COG5069 564 DDIADA 569 (612)
T ss_pred HHhhhh
Confidence 433333
No 265
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.74 E-value=2.1e+02 Score=17.63 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHc
Q 028812 143 GDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDGDGMVDYKEFKQMMKG 196 (203)
Q Consensus 143 ~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 196 (203)
+.|.|+.++...+...- . ..+..++++.... .-|...+.-|+++|+.
T Consensus 26 ~~~Vit~e~~~~I~a~~---T--~~~kar~Lld~l~--~kG~~A~~~F~~~L~e 72 (82)
T cd08330 26 GKKVITQEQYSEVRAEK---T--NQEKMRKLFSFVR--SWGASCKDIFYQILRE 72 (82)
T ss_pred HCCCCCHHHHHHHHcCC---C--cHHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Confidence 45677777776665422 1 4556666666653 3466777777777753
No 266
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.60 E-value=1.2e+02 Score=14.86 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=5.3
Q ss_pred eeHHHHHHHHH
Q 028812 185 VDYKEFKQMMK 195 (203)
Q Consensus 185 i~~~eF~~~l~ 195 (203)
|+.+||..++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666666554
No 267
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=20.72 E-value=1.7e+02 Score=16.20 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=22.7
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCC
Q 028812 143 GDGFITFDELKSVLGSLGLKQGRTVEDCKRMIMKVDVDG 181 (203)
Q Consensus 143 ~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 181 (203)
..|.|+..++++.+. .+..-+..++..+|..+
T Consensus 7 ~~~~itv~~~rd~lg-------~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-------LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHHT-------S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHHC-------ccHHHHHHHHHHHhccC
Confidence 378999999999883 25666777777776553
No 268
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=20.61 E-value=2.1e+02 Score=21.07 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhh-CCCCCCceeHHHHHHHHHcCCCCCC
Q 028812 150 DELKSVLGSLGLKQGRTVEDCKRMIMKV-DVDGDGMVDYKEFKQMMKGGGFSAL 202 (203)
Q Consensus 150 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~l~~~~~~~~ 202 (203)
+-+..++++-|+...+++ ++++.++.. .....-.++|+||+..++..+.+.+
T Consensus 157 eTidsLirKaGY~g~It~-~~r~~I~ltRY~S~k~~~~Y~EY~~~~q~~~~~~g 209 (210)
T KOG3274|consen 157 ETIDSLIRKAGYKGPITE-ELRKSIKLTRYRSEKISITYEEYLAYLQHHGAQNG 209 (210)
T ss_pred HHHHHHHHhcCCCCccCH-HHHhheeeeEeeceeeeeeHHHHHHHHHhhcCcCC
Confidence 345666777777654443 333333322 2334456999999999988766543
No 269
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.53 E-value=3.6e+02 Score=19.89 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=8.4
Q ss_pred HhcCCCCCCceeHHHHHH
Q 028812 100 ERIDVNGDGCVDIDEFGA 117 (203)
Q Consensus 100 ~~~d~~~~g~i~~~ef~~ 117 (203)
..|..|+.|.|+....+.
T Consensus 126 ~af~~dk~G~l~~~rIl~ 143 (195)
T PF11363_consen 126 RAFQVDKEGNLNTSRILG 143 (195)
T ss_pred HHHhcCCCCCcCHHHHHH
Confidence 334445555555544443
No 270
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=20.52 E-value=1.9e+02 Score=18.13 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=16.2
Q ss_pred eeHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 028812 147 ITFDELKSVLGSLGLKQGRTVEDCKRMI 174 (203)
Q Consensus 147 Is~~e~~~~l~~~~~~~~~~~~~~~~~~ 174 (203)
|+.++++.+.+-..+.+ +++++..+.
T Consensus 1 i~~~~v~~lA~La~L~l--~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLEL--SEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCC--CHHHHHHHH
Confidence 45667777766666655 777665543
No 271
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.52 E-value=1.9e+02 Score=16.76 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhcCCCC
Q 028812 132 MKEAFNVFDQNGDGFITFDELKSVLGSLGLKQ 163 (203)
Q Consensus 132 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~ 163 (203)
+..+++.++.+...-++.+|..+-.+..|.+.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 34556666666666677777777777776654
No 272
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=20.42 E-value=1.7e+02 Score=18.57 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=4.0
Q ss_pred CHHHHHHHHHh
Q 028812 166 TVEDCKRMIMK 176 (203)
Q Consensus 166 ~~~~~~~~~~~ 176 (203)
+.+++..++..
T Consensus 26 ~~~~L~~f~~~ 36 (90)
T PF02337_consen 26 KKKDLINFLSF 36 (90)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 34444443333
No 273
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=20.03 E-value=2.3e+02 Score=20.51 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=16.9
Q ss_pred CCceeHHHHHHHHHHHhc-ccChHHHHHHHHHhh
Q 028812 107 DGCVDIDEFGALYKSIME-EKDEEEDMKEAFNVF 139 (203)
Q Consensus 107 ~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~ 139 (203)
..+++.++|+........ ..-..+.+..+|..+
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 180 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFPREFLKELYDSI 180 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 345666666666654332 123345555555543
Done!