Query 028813
Match_columns 203
No_of_seqs 153 out of 1925
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.6E-45 1.4E-49 247.6 22.1 202 1-202 2-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 8E-42 1.7E-46 231.7 19.9 197 6-202 3-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 1E-39 2.3E-44 225.3 21.8 173 4-176 8-180 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-39 2.3E-44 221.5 18.9 196 6-202 20-221 (221)
5 KOG0080 GTPase Rab18, small G 100.0 1.5E-39 3.3E-44 213.9 18.3 199 4-202 7-208 (209)
6 cd04120 Rab12 Rab12 subfamily. 100.0 9.8E-38 2.1E-42 223.2 23.8 165 9-173 1-166 (202)
7 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.8E-37 3.9E-42 223.0 23.0 193 9-201 1-201 (201)
8 PLN03110 Rab GTPase; Provision 100.0 6.4E-37 1.4E-41 222.1 24.9 199 5-203 9-216 (216)
9 cd04121 Rab40 Rab40 subfamily. 100.0 5.7E-37 1.2E-41 217.3 23.4 170 5-175 3-172 (189)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.2E-37 9.1E-42 211.6 20.0 173 3-175 9-181 (222)
11 KOG0394 Ras-related GTPase [Ge 100.0 1.6E-37 3.4E-42 209.0 17.3 200 1-200 1-208 (210)
12 cd04112 Rab26 Rab26 subfamily. 100.0 1.8E-36 3.9E-41 216.2 22.7 190 9-201 1-191 (191)
13 KOG0098 GTPase Rab2, small G p 100.0 6.4E-37 1.4E-41 206.4 19.1 171 5-175 3-173 (216)
14 cd04126 Rab20 Rab20 subfamily. 100.0 1.7E-36 3.6E-41 219.1 22.3 187 9-201 1-220 (220)
15 cd04110 Rab35 Rab35 subfamily. 100.0 5.2E-36 1.1E-40 215.0 24.5 195 6-201 4-199 (199)
16 KOG0079 GTP-binding protein H- 100.0 9.9E-38 2.1E-42 202.7 13.6 197 1-201 1-198 (198)
17 cd04125 RabA_like RabA-like su 100.0 4.2E-35 9.1E-40 208.7 24.0 168 9-176 1-168 (188)
18 KOG0086 GTPase Rab4, small G p 100.0 2.5E-36 5.4E-41 197.3 16.0 175 1-175 2-176 (214)
19 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-35 3.3E-40 211.2 21.0 185 10-202 1-188 (190)
20 cd04122 Rab14 Rab14 subfamily. 100.0 2.6E-35 5.5E-40 205.9 21.6 164 8-171 2-165 (166)
21 cd04111 Rab39 Rab39 subfamily. 100.0 1.4E-34 3.1E-39 209.0 24.2 171 7-177 1-173 (211)
22 cd01867 Rab8_Rab10_Rab13_like 100.0 7.1E-35 1.5E-39 203.8 21.5 166 6-171 1-166 (167)
23 PTZ00369 Ras-like protein; Pro 100.0 1.1E-34 2.4E-39 206.7 21.4 168 7-175 4-172 (189)
24 cd04109 Rab28 Rab28 subfamily. 100.0 1.8E-34 3.9E-39 209.4 22.8 164 9-172 1-168 (215)
25 KOG0093 GTPase Rab3, small G p 100.0 2.9E-35 6.2E-40 191.0 16.0 173 4-176 17-189 (193)
26 cd01865 Rab3 Rab3 subfamily. 100.0 2.4E-34 5.2E-39 200.8 21.9 163 9-171 2-164 (165)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.6E-34 3.5E-39 202.7 21.0 164 8-172 2-166 (172)
28 KOG0091 GTPase Rab39, small G 100.0 3.5E-35 7.6E-40 193.9 16.4 201 2-202 2-213 (213)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.2E-34 4.9E-39 201.1 21.6 163 8-170 2-164 (166)
30 cd04117 Rab15 Rab15 subfamily. 100.0 2.2E-34 4.7E-39 200.1 20.7 160 9-168 1-160 (161)
31 cd04118 Rab24 Rab24 subfamily. 100.0 8.2E-34 1.8E-38 202.9 24.0 188 9-201 1-193 (193)
32 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.3E-34 7.2E-39 202.3 20.9 162 6-169 3-179 (182)
33 cd04133 Rop_like Rop subfamily 100.0 3.9E-34 8.4E-39 200.8 21.1 159 9-169 2-172 (176)
34 cd04127 Rab27A Rab27a subfamil 100.0 4.4E-34 9.5E-39 202.2 21.5 167 6-172 2-179 (180)
35 PLN03108 Rab family protein; P 100.0 1.6E-33 3.5E-38 203.5 24.7 169 6-174 4-172 (210)
36 cd01868 Rab11_like Rab11-like. 100.0 6.7E-34 1.4E-38 198.5 21.5 163 7-169 2-164 (165)
37 cd04119 RJL RJL (RabJ-Like) su 100.0 7.5E-34 1.6E-38 198.6 20.9 162 9-170 1-167 (168)
38 cd01866 Rab2 Rab2 subfamily. 100.0 1.4E-33 3E-38 197.4 22.1 166 6-171 2-167 (168)
39 PLN03118 Rab family protein; P 100.0 3E-33 6.5E-38 202.5 24.5 170 4-174 10-181 (211)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.1E-34 2E-38 200.4 21.0 165 9-174 1-170 (182)
41 cd01864 Rab19 Rab19 subfamily. 100.0 1E-33 2.2E-38 197.6 21.0 163 6-168 1-164 (165)
42 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.9E-33 6.3E-38 203.3 23.9 165 6-172 11-190 (232)
43 KOG0095 GTPase Rab30, small G 100.0 2.8E-34 6E-39 187.1 16.0 173 4-176 3-175 (213)
44 cd01875 RhoG RhoG subfamily. 100.0 1.9E-33 4.1E-38 200.5 21.6 163 7-171 2-178 (191)
45 PF00071 Ras: Ras family; Int 100.0 1.5E-33 3.3E-38 196.1 20.2 161 10-170 1-161 (162)
46 cd04131 Rnd Rnd subfamily. Th 100.0 2.1E-33 4.5E-38 197.8 20.6 159 9-169 2-175 (178)
47 cd04132 Rho4_like Rho4-like su 100.0 2.9E-33 6.2E-38 199.1 21.5 179 9-202 1-186 (187)
48 cd04113 Rab4 Rab4 subfamily. 100.0 2.2E-33 4.8E-38 195.1 20.3 160 9-168 1-160 (161)
49 smart00175 RAB Rab subfamily o 100.0 3.9E-33 8.5E-38 194.3 21.2 163 9-171 1-163 (164)
50 cd04136 Rap_like Rap-like subf 100.0 3E-33 6.4E-38 194.8 20.1 160 9-169 2-162 (163)
51 PLN03071 GTP-binding nuclear p 100.0 4.2E-33 9.2E-38 202.4 21.3 165 6-173 11-175 (219)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 3.9E-33 8.5E-38 194.4 20.0 162 8-170 1-163 (164)
53 cd01874 Cdc42 Cdc42 subfamily. 100.0 9.8E-33 2.1E-37 194.2 20.8 159 9-169 2-174 (175)
54 KOG0088 GTPase Rab21, small G 100.0 7.4E-34 1.6E-38 186.8 13.7 170 5-174 10-179 (218)
55 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.2E-32 4.8E-37 197.8 22.6 164 9-174 2-180 (222)
56 cd00877 Ran Ran (Ras-related n 100.0 1.5E-32 3.2E-37 191.8 20.9 160 9-171 1-160 (166)
57 KOG0081 GTPase Rab27, small G 100.0 7.7E-35 1.7E-39 191.6 8.7 174 4-177 5-188 (219)
58 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.9E-32 4.2E-37 191.9 21.4 162 10-171 2-166 (170)
59 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-32 2.6E-37 191.6 20.1 159 9-168 1-161 (162)
60 cd04134 Rho3 Rho3 subfamily. 100.0 1.6E-32 3.5E-37 195.4 21.1 161 9-171 1-175 (189)
61 cd01861 Rab6 Rab6 subfamily. 100.0 1.5E-32 3.3E-37 190.8 20.5 160 9-168 1-160 (161)
62 cd04116 Rab9 Rab9 subfamily. 100.0 2.4E-32 5.2E-37 191.5 21.3 162 6-168 3-169 (170)
63 smart00173 RAS Ras subfamily o 100.0 1.7E-32 3.6E-37 191.2 20.0 161 9-170 1-162 (164)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 1.9E-32 4.1E-37 190.8 20.1 161 8-169 1-162 (163)
65 cd04124 RabL2 RabL2 subfamily. 100.0 2.7E-32 5.8E-37 189.7 20.8 161 9-173 1-161 (161)
66 cd04140 ARHI_like ARHI subfami 100.0 2.3E-32 5E-37 190.8 20.4 159 9-168 2-163 (165)
67 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3E-32 6.6E-37 191.0 21.1 162 8-169 2-168 (170)
68 cd04142 RRP22 RRP22 subfamily. 100.0 3E-32 6.4E-37 194.9 20.7 167 9-175 1-179 (198)
69 cd01860 Rab5_related Rab5-rela 100.0 5E-32 1.1E-36 188.6 21.3 162 8-169 1-162 (163)
70 cd01871 Rac1_like Rac1-like su 100.0 3.9E-32 8.6E-37 190.9 20.1 158 9-168 2-173 (174)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 7E-32 1.5E-36 187.5 20.5 159 9-169 2-161 (162)
72 KOG0097 GTPase Rab14, small G 100.0 3.1E-32 6.8E-37 176.2 17.2 174 4-177 7-180 (215)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9.6E-32 2.1E-36 187.3 20.9 161 8-169 2-163 (164)
74 cd04123 Rab21 Rab21 subfamily. 100.0 1.2E-31 2.5E-36 186.4 21.2 161 9-169 1-161 (162)
75 cd04114 Rab30 Rab30 subfamily. 100.0 2E-31 4.4E-36 186.7 22.3 168 1-169 1-168 (169)
76 smart00176 RAN Ran (Ras-relate 100.0 1.8E-31 3.8E-36 190.7 21.1 156 14-172 1-156 (200)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 2E-31 4.3E-36 185.8 20.8 160 9-169 1-163 (164)
78 cd01862 Rab7 Rab7 subfamily. 100.0 3E-31 6.6E-36 186.2 21.6 165 9-173 1-170 (172)
79 cd00154 Rab Rab family. Rab G 100.0 4.8E-31 1E-35 182.4 19.8 158 9-166 1-158 (159)
80 cd01863 Rab18 Rab18 subfamily. 100.0 8.3E-31 1.8E-35 182.1 20.8 159 9-168 1-160 (161)
81 cd04143 Rhes_like Rhes_like su 100.0 4.1E-31 8.8E-36 194.6 20.2 161 9-170 1-171 (247)
82 smart00174 RHO Rho (Ras homolo 100.0 4.7E-31 1E-35 185.6 19.3 158 11-170 1-172 (174)
83 cd04148 RGK RGK subfamily. Th 100.0 8.3E-31 1.8E-35 190.6 21.2 165 9-175 1-168 (221)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 9.9E-31 2.1E-35 183.0 20.8 161 9-170 2-164 (168)
85 cd04146 RERG_RasL11_like RERG/ 100.0 4E-31 8.7E-36 184.5 18.0 160 10-170 1-164 (165)
86 cd01892 Miro2 Miro2 subfamily. 100.0 6.8E-31 1.5E-35 183.9 19.2 163 6-170 2-166 (169)
87 cd01873 RhoBTB RhoBTB subfamil 100.0 8.2E-31 1.8E-35 186.8 19.9 158 8-168 2-194 (195)
88 cd04103 Centaurin_gamma Centau 100.0 1.2E-30 2.5E-35 180.5 19.2 153 9-168 1-157 (158)
89 cd04135 Tc10 TC10 subfamily. 100.0 3.1E-30 6.7E-35 181.5 20.5 159 9-169 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.9E-30 8.6E-35 180.8 20.2 157 9-167 1-171 (173)
91 cd04147 Ras_dva Ras-dva subfam 100.0 4E-30 8.8E-35 184.4 19.8 167 10-177 1-170 (198)
92 cd04139 RalA_RalB RalA/RalB su 100.0 7.5E-30 1.6E-34 177.7 20.6 161 9-170 1-162 (164)
93 cd04129 Rho2 Rho2 subfamily. 100.0 8.3E-30 1.8E-34 181.2 21.1 167 9-177 2-180 (187)
94 KOG0083 GTPase Rab26/Rab37, sm 100.0 7E-32 1.5E-36 172.7 7.7 189 12-201 1-190 (192)
95 cd00876 Ras Ras family. The R 100.0 8.9E-30 1.9E-34 176.6 19.0 158 10-168 1-159 (160)
96 cd04137 RheB Rheb (Ras Homolog 100.0 3.4E-29 7.4E-34 177.1 21.2 165 9-174 2-167 (180)
97 PLN00223 ADP-ribosylation fact 100.0 1.9E-29 4.2E-34 178.2 18.3 160 6-172 15-180 (181)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.2E-29 7E-34 177.6 18.9 166 8-176 3-176 (183)
99 cd04149 Arf6 Arf6 subfamily. 100.0 1.8E-29 3.8E-34 176.5 16.7 154 7-167 8-167 (168)
100 cd04158 ARD1 ARD1 subfamily. 100.0 4.2E-29 9.2E-34 174.9 17.9 156 10-172 1-163 (169)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.9E-30 6.2E-35 179.9 11.9 153 10-167 1-163 (164)
102 cd01870 RhoA_like RhoA-like su 100.0 1.6E-28 3.5E-33 172.9 20.6 159 9-169 2-174 (175)
103 PTZ00133 ADP-ribosylation fact 100.0 6.9E-29 1.5E-33 175.6 18.5 161 6-173 15-181 (182)
104 smart00177 ARF ARF-like small 100.0 1.8E-29 3.9E-34 177.7 14.5 157 6-169 11-173 (175)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.4E-29 3.1E-34 175.5 13.8 152 9-167 1-158 (159)
106 cd00157 Rho Rho (Ras homology) 100.0 2.4E-28 5.3E-33 171.3 19.9 157 9-167 1-170 (171)
107 cd04154 Arl2 Arl2 subfamily. 100.0 1.2E-28 2.7E-33 173.2 17.4 156 5-167 11-172 (173)
108 KOG0395 Ras-related GTPase [Ge 100.0 2.8E-28 6E-33 173.0 19.1 167 7-174 2-169 (196)
109 cd01893 Miro1 Miro1 subfamily. 100.0 3.1E-28 6.6E-33 170.1 18.2 159 9-170 1-164 (166)
110 PTZ00132 GTP-binding nuclear p 100.0 1.7E-27 3.7E-32 172.9 21.9 166 4-172 5-170 (215)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.5E-27 3.2E-32 170.4 20.0 148 9-156 1-176 (202)
112 PF00025 Arf: ADP-ribosylation 100.0 1.9E-27 4.2E-32 167.1 18.2 157 6-169 12-175 (175)
113 cd04157 Arl6 Arl6 subfamily. 100.0 3E-28 6.4E-33 169.4 13.9 152 10-167 1-161 (162)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.9E-28 6.3E-33 170.3 13.6 153 10-167 1-166 (167)
115 PTZ00099 rab6; Provisional 100.0 5.7E-27 1.2E-31 164.5 19.9 144 32-175 4-147 (176)
116 KOG0073 GTP-binding ADP-ribosy 100.0 3.7E-27 7.9E-32 156.1 17.3 163 5-172 13-180 (185)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.6E-27 7.8E-32 165.8 17.0 154 7-167 14-173 (174)
118 cd00879 Sar1 Sar1 subfamily. 100.0 3.2E-27 6.8E-32 168.5 16.8 156 6-168 17-189 (190)
119 KOG0393 Ras-related small GTPa 100.0 1.2E-27 2.5E-32 166.3 13.7 166 6-173 2-182 (198)
120 KOG4252 GTP-binding protein [S 100.0 4E-29 8.8E-34 167.8 5.5 170 5-175 17-186 (246)
121 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.4E-27 5.2E-32 164.5 14.3 152 10-167 1-159 (160)
122 cd04160 Arfrp1 Arfrp1 subfamil 100.0 5.3E-27 1.1E-31 163.9 16.1 152 10-167 1-166 (167)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.2E-27 9E-32 163.0 14.4 151 10-167 1-157 (158)
124 cd04151 Arl1 Arl1 subfamily. 100.0 1.8E-26 3.9E-31 159.9 17.2 151 10-167 1-157 (158)
125 PRK12299 obgE GTPase CgtA; Rev 99.9 3.4E-26 7.4E-31 174.6 18.6 164 8-172 158-330 (335)
126 cd01897 NOG NOG1 is a nucleola 99.9 2.6E-26 5.6E-31 160.6 16.5 155 10-169 2-167 (168)
127 smart00178 SAR Sar1p-like memb 99.9 2.8E-26 6E-31 162.7 16.8 156 6-168 15-183 (184)
128 PLN00023 GTP-binding protein; 99.9 1.9E-25 4.1E-30 167.0 21.1 140 6-145 19-189 (334)
129 cd01898 Obg Obg subfamily. Th 99.9 2.9E-26 6.3E-31 160.6 15.2 157 10-168 2-169 (170)
130 cd01890 LepA LepA subfamily. 99.9 1.3E-25 2.8E-30 158.6 16.0 154 10-169 2-176 (179)
131 cd04159 Arl10_like Arl10-like 99.9 1.6E-25 3.4E-30 154.8 15.8 151 11-167 2-158 (159)
132 PF02421 FeoB_N: Ferrous iron 99.9 2.4E-26 5.1E-31 156.1 10.9 148 9-165 1-156 (156)
133 cd01878 HflX HflX subfamily. 99.9 9.7E-26 2.1E-30 162.5 14.8 157 6-169 39-204 (204)
134 TIGR00231 small_GTP small GTP- 99.9 7.4E-25 1.6E-29 151.2 18.1 157 9-166 2-160 (161)
135 cd04155 Arl3 Arl3 subfamily. 99.9 9.2E-25 2E-29 153.5 18.0 153 5-167 11-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 4.7E-25 1E-29 153.5 15.6 155 9-167 1-163 (164)
137 cd01879 FeoB Ferrous iron tran 99.9 1.3E-24 2.7E-29 150.4 15.9 148 13-169 1-156 (158)
138 KOG0070 GTP-binding ADP-ribosy 99.9 4.2E-25 9.1E-30 150.0 12.5 160 6-172 15-180 (181)
139 TIGR02729 Obg_CgtA Obg family 99.9 2.8E-24 6E-29 164.0 17.2 160 8-169 157-328 (329)
140 cd00882 Ras_like_GTPase Ras-li 99.9 7.7E-24 1.7E-28 144.9 17.1 153 13-166 1-156 (157)
141 TIGR02528 EutP ethanolamine ut 99.9 9E-25 2E-29 148.7 12.2 134 10-166 2-141 (142)
142 PRK04213 GTP-binding protein; 99.9 3.6E-25 7.9E-30 159.2 10.8 154 7-173 8-195 (201)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.4E-24 7.4E-29 149.8 14.8 157 10-170 2-166 (168)
144 TIGR03156 GTP_HflX GTP-binding 99.9 6E-24 1.3E-28 163.5 16.9 155 6-168 187-350 (351)
145 COG1100 GTPase SAR1 and relate 99.9 3.5E-23 7.7E-28 150.7 19.9 168 7-174 4-189 (219)
146 cd01881 Obg_like The Obg-like 99.9 3.4E-24 7.3E-29 150.9 13.0 154 13-168 1-175 (176)
147 PRK03003 GTP-binding protein D 99.9 7.4E-24 1.6E-28 169.7 16.1 180 7-199 37-226 (472)
148 PRK12296 obgE GTPase CgtA; Rev 99.9 2.8E-23 6.1E-28 164.3 17.7 167 7-176 158-346 (500)
149 TIGR00436 era GTP-binding prot 99.9 1.4E-23 3E-28 157.1 15.2 157 10-174 2-168 (270)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.1E-23 8.9E-28 142.5 16.2 146 9-169 2-156 (157)
151 cd01891 TypA_BipA TypA (tyrosi 99.9 6.6E-24 1.4E-28 151.8 12.6 160 9-172 3-190 (194)
152 KOG1673 Ras GTPases [General f 99.9 8E-24 1.7E-28 139.1 11.5 173 7-180 19-196 (205)
153 PRK12297 obgE GTPase CgtA; Rev 99.9 7.2E-23 1.6E-27 160.1 19.0 161 9-174 159-331 (424)
154 PRK03003 GTP-binding protein D 99.9 6.1E-24 1.3E-28 170.2 13.1 166 6-177 209-389 (472)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9.3E-23 2E-27 161.2 18.1 154 7-174 202-364 (442)
156 PRK15494 era GTPase Era; Provi 99.9 6.6E-23 1.4E-27 157.6 16.5 162 6-177 50-223 (339)
157 KOG0075 GTP-binding ADP-ribosy 99.9 1.6E-23 3.4E-28 136.5 11.0 157 7-172 19-184 (186)
158 TIGR03594 GTPase_EngA ribosome 99.9 4.8E-23 1E-27 164.0 15.7 164 6-176 170-350 (429)
159 cd01889 SelB_euk SelB subfamil 99.9 4.8E-23 1E-27 147.1 13.5 158 9-170 1-186 (192)
160 PRK05291 trmE tRNA modificatio 99.9 7.4E-23 1.6E-27 162.5 15.8 149 7-171 214-371 (449)
161 PRK11058 GTPase HflX; Provisio 99.9 1.4E-22 3.1E-27 159.3 16.6 159 8-172 197-364 (426)
162 PRK12298 obgE GTPase CgtA; Rev 99.9 2.9E-22 6.4E-27 155.9 18.0 167 9-177 160-340 (390)
163 cd01894 EngA1 EngA1 subfamily. 99.9 1E-22 2.2E-27 140.7 13.5 146 12-168 1-156 (157)
164 COG1160 Predicted GTPases [Gen 99.9 9.1E-23 2E-27 156.7 14.3 177 9-199 4-193 (444)
165 cd00881 GTP_translation_factor 99.9 1.6E-22 3.5E-27 143.8 14.5 154 10-169 1-186 (189)
166 KOG0071 GTP-binding ADP-ribosy 99.9 2.1E-22 4.6E-27 130.2 13.2 158 6-170 15-178 (180)
167 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-22 3E-27 161.4 15.1 177 10-199 1-187 (429)
168 PRK00093 GTP-binding protein D 99.9 2.7E-22 6E-27 159.9 16.8 175 9-199 2-188 (435)
169 PF08477 Miro: Miro-like prote 99.9 1.1E-22 2.5E-27 134.3 12.2 114 10-124 1-119 (119)
170 PRK15467 ethanolamine utilizat 99.9 2.2E-22 4.8E-27 139.1 13.7 142 10-173 3-150 (158)
171 TIGR00487 IF-2 translation ini 99.9 4.1E-22 8.8E-27 162.0 17.3 154 6-167 85-247 (587)
172 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-21 2.4E-26 137.5 16.3 155 8-168 2-173 (174)
173 TIGR01393 lepA GTP-binding pro 99.9 5.5E-22 1.2E-26 161.9 16.7 157 8-170 3-180 (595)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 3.8E-22 8.3E-27 143.5 13.4 159 9-169 1-198 (203)
175 PF00009 GTP_EFTU: Elongation 99.9 1.6E-22 3.5E-27 143.9 11.1 158 7-170 2-187 (188)
176 PRK00089 era GTPase Era; Revie 99.9 1.2E-21 2.7E-26 148.5 16.0 163 7-174 4-175 (292)
177 TIGR00475 selB selenocysteine- 99.9 1.2E-21 2.7E-26 159.7 17.0 155 9-172 1-168 (581)
178 COG1159 Era GTPase [General fu 99.9 8.2E-22 1.8E-26 144.0 13.8 167 6-177 4-179 (298)
179 PRK09518 bifunctional cytidyla 99.9 1.7E-21 3.7E-26 162.8 17.5 182 7-199 274-465 (712)
180 cd04163 Era Era subfamily. Er 99.9 3E-21 6.4E-26 134.4 15.9 156 8-168 3-167 (168)
181 PRK00454 engB GTP-binding prot 99.9 2.1E-21 4.5E-26 139.1 15.4 160 5-171 21-195 (196)
182 CHL00189 infB translation init 99.9 1.3E-21 2.8E-26 161.3 15.8 157 6-169 242-409 (742)
183 PRK05306 infB translation init 99.9 2.6E-21 5.6E-26 160.9 17.4 154 6-168 288-450 (787)
184 KOG0076 GTP-binding ADP-ribosy 99.9 3.3E-22 7.1E-27 134.0 9.4 161 6-172 15-189 (197)
185 PRK00093 GTP-binding protein D 99.9 1.5E-21 3.3E-26 155.6 15.1 162 7-175 172-349 (435)
186 PRK09554 feoB ferrous iron tra 99.9 5.7E-21 1.2E-25 159.5 18.9 154 7-169 2-167 (772)
187 KOG3883 Ras family small GTPas 99.9 1E-20 2.3E-25 124.2 16.1 164 7-171 8-176 (198)
188 TIGR00437 feoB ferrous iron tr 99.9 2.3E-21 5.1E-26 158.3 15.8 146 15-169 1-154 (591)
189 TIGR03598 GTPase_YsxC ribosome 99.9 2.4E-21 5.2E-26 136.8 12.8 149 4-159 14-179 (179)
190 PRK09518 bifunctional cytidyla 99.9 7.4E-21 1.6E-25 159.0 15.9 164 7-178 449-629 (712)
191 cd00880 Era_like Era (E. coli 99.9 1E-20 2.2E-25 130.6 13.2 151 13-168 1-162 (163)
192 cd04105 SR_beta Signal recogni 99.9 1.8E-20 3.9E-25 134.6 14.9 118 10-128 2-124 (203)
193 COG1160 Predicted GTPases [Gen 99.9 3.5E-20 7.6E-25 142.5 17.3 165 7-177 177-358 (444)
194 PRK05433 GTP-binding protein L 99.9 1.8E-20 3.9E-25 153.2 16.5 159 7-171 6-185 (600)
195 KOG4423 GTP-binding protein-li 99.9 4.7E-23 1E-27 139.5 -0.6 196 5-200 22-224 (229)
196 KOG0074 GTP-binding ADP-ribosy 99.8 1.3E-20 2.7E-25 122.2 10.2 154 5-167 14-176 (185)
197 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.3E-20 2.8E-25 128.1 9.9 163 7-172 9-171 (216)
198 TIGR00491 aIF-2 translation in 99.8 6.4E-20 1.4E-24 149.0 15.9 160 7-173 3-219 (590)
199 cd01896 DRG The developmentall 99.8 3.2E-19 6.8E-24 130.6 17.8 151 10-169 2-225 (233)
200 COG0486 ThdF Predicted GTPase 99.8 1E-19 2.2E-24 140.4 15.8 154 7-172 216-378 (454)
201 PF10662 PduV-EutP: Ethanolami 99.8 3.2E-20 6.9E-25 123.4 11.2 135 10-166 3-142 (143)
202 PRK12317 elongation factor 1-a 99.8 7.3E-20 1.6E-24 145.3 14.2 154 6-163 4-198 (425)
203 TIGR00483 EF-1_alpha translati 99.8 1E-19 2.3E-24 144.4 14.1 154 6-163 5-200 (426)
204 PRK04000 translation initiatio 99.8 1.3E-19 2.8E-24 142.7 13.6 167 1-170 2-201 (411)
205 TIGR03680 eif2g_arch translati 99.8 1.1E-19 2.4E-24 143.1 13.1 163 6-170 2-196 (406)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.4E-19 3.1E-24 130.6 12.3 147 10-161 1-185 (208)
207 COG0370 FeoB Fe2+ transport sy 99.8 3.4E-19 7.3E-24 143.0 15.0 157 7-172 2-166 (653)
208 cd01876 YihA_EngB The YihA (En 99.8 4.3E-19 9.3E-24 123.7 13.5 150 10-168 1-169 (170)
209 COG2229 Predicted GTPase [Gene 99.8 1.6E-18 3.5E-23 117.9 15.5 158 5-168 7-176 (187)
210 PRK10218 GTP-binding protein; 99.8 9.4E-19 2E-23 142.7 17.0 160 7-170 4-195 (607)
211 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.1E-19 1.3E-23 125.6 14.0 146 8-159 2-172 (195)
212 KOG0072 GTP-binding ADP-ribosy 99.8 3.4E-20 7.4E-25 120.6 6.9 161 6-172 16-181 (182)
213 PRK10512 selenocysteinyl-tRNA- 99.8 5.7E-19 1.2E-23 144.7 15.8 156 10-170 2-166 (614)
214 cd04168 TetM_like Tet(M)-like 99.8 7E-19 1.5E-23 129.0 14.1 112 10-127 1-130 (237)
215 TIGR01394 TypA_BipA GTP-bindin 99.8 3.8E-19 8.3E-24 145.1 13.9 155 10-170 3-191 (594)
216 KOG1423 Ras-like GTPase ERA [C 99.8 5.9E-19 1.3E-23 128.9 13.2 169 5-177 69-278 (379)
217 PRK04004 translation initiatio 99.8 2.1E-18 4.6E-23 140.7 17.3 159 6-171 4-219 (586)
218 cd01883 EF1_alpha Eukaryotic e 99.8 2.8E-19 6.1E-24 130.0 10.7 146 10-159 1-194 (219)
219 KOG1489 Predicted GTP-binding 99.8 1.4E-18 2.9E-23 127.6 13.5 157 8-168 196-365 (366)
220 COG0218 Predicted GTPase [Gene 99.8 2.4E-18 5.1E-23 119.5 13.7 158 4-171 20-198 (200)
221 COG2262 HflX GTPases [General 99.8 6.2E-18 1.3E-22 128.5 15.5 162 6-174 190-360 (411)
222 PRK12736 elongation factor Tu; 99.8 3.4E-18 7.4E-23 134.2 14.3 159 5-169 9-200 (394)
223 PRK12735 elongation factor Tu; 99.8 7.4E-18 1.6E-22 132.4 14.4 158 5-168 9-201 (396)
224 TIGR00485 EF-Tu translation el 99.8 8.6E-18 1.9E-22 132.1 14.5 151 5-161 9-185 (394)
225 cd04104 p47_IIGP_like p47 (47- 99.8 2.4E-17 5.2E-22 118.0 15.2 158 9-174 2-188 (197)
226 COG1084 Predicted GTPase [Gene 99.8 2.3E-17 4.9E-22 122.0 15.2 159 6-170 166-336 (346)
227 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.8E-17 3.8E-22 120.5 14.2 152 10-167 1-220 (224)
228 cd04167 Snu114p Snu114p subfam 99.8 7.5E-18 1.6E-22 122.1 12.0 113 10-126 2-136 (213)
229 COG0536 Obg Predicted GTPase [ 99.8 1.8E-17 3.9E-22 123.1 13.9 163 10-173 161-336 (369)
230 cd01886 EF-G Elongation factor 99.8 1.6E-17 3.4E-22 123.9 13.1 112 10-127 1-130 (270)
231 CHL00071 tufA elongation facto 99.8 1.5E-17 3.3E-22 131.2 13.8 147 6-158 10-181 (409)
232 KOG0077 Vesicle coat complex C 99.8 6.6E-18 1.4E-22 112.6 8.7 155 7-168 19-191 (193)
233 cd01885 EF2 EF2 (for archaea a 99.8 1.6E-17 3.5E-22 120.3 11.2 113 10-126 2-138 (222)
234 KOG1707 Predicted Ras related/ 99.7 8E-18 1.7E-22 132.2 9.9 165 4-170 5-175 (625)
235 COG0532 InfB Translation initi 99.7 2.1E-16 4.6E-21 123.8 16.8 159 7-172 4-172 (509)
236 cd04169 RF3 RF3 subfamily. Pe 99.7 1.4E-16 2.9E-21 118.8 15.0 116 9-128 3-138 (267)
237 PRK00049 elongation factor Tu; 99.7 1.4E-16 3E-21 125.2 15.4 146 5-156 9-179 (396)
238 TIGR02034 CysN sulfate adenyly 99.7 5.2E-17 1.1E-21 128.0 12.7 148 9-161 1-188 (406)
239 PLN03127 Elongation factor Tu; 99.7 1.3E-16 2.9E-21 126.6 14.9 158 6-169 59-251 (447)
240 PLN03126 Elongation factor Tu; 99.7 1.9E-16 4.1E-21 126.3 15.9 147 5-157 78-249 (478)
241 cd01850 CDC_Septin CDC/Septin. 99.7 1.9E-16 4.1E-21 118.6 14.9 144 7-154 3-186 (276)
242 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.3E-17 1.6E-21 116.8 12.1 165 10-177 1-183 (232)
243 PLN00043 elongation factor 1-a 99.7 1.4E-16 3.1E-21 126.5 14.8 149 6-160 5-203 (447)
244 PTZ00141 elongation factor 1- 99.7 1.7E-16 3.6E-21 126.2 14.5 150 6-160 5-203 (446)
245 COG1163 DRG Predicted GTPase [ 99.7 4.3E-16 9.3E-21 115.0 15.2 155 7-170 62-289 (365)
246 PF01926 MMR_HSR1: 50S ribosom 99.7 3.6E-16 7.8E-21 102.6 13.2 106 10-122 1-116 (116)
247 PRK05124 cysN sulfate adenylyl 99.7 1.7E-16 3.6E-21 127.1 13.6 152 6-162 25-217 (474)
248 PRK00741 prfC peptide chain re 99.7 7.6E-16 1.6E-20 124.4 16.1 116 6-127 8-145 (526)
249 PTZ00327 eukaryotic translatio 99.7 2.6E-16 5.7E-21 124.8 12.7 163 6-170 32-233 (460)
250 cd04170 EF-G_bact Elongation f 99.7 9.5E-16 2.1E-20 114.9 14.8 148 10-165 1-168 (268)
251 COG5256 TEF1 Translation elong 99.7 3.1E-16 6.8E-21 119.3 11.8 179 6-190 5-237 (428)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 7.2E-16 1.6E-20 117.1 13.8 158 11-172 1-271 (318)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.1E-15 4.5E-20 108.0 15.5 161 9-173 1-187 (196)
254 PRK05506 bifunctional sulfate 99.7 4.5E-16 9.7E-21 129.1 13.4 151 5-160 21-211 (632)
255 KOG1145 Mitochondrial translat 99.7 1.5E-15 3.2E-20 119.0 15.3 156 6-169 151-315 (683)
256 PRK13351 elongation factor G; 99.7 9.7E-16 2.1E-20 128.4 15.1 116 6-127 6-139 (687)
257 COG3596 Predicted GTPase [Gene 99.7 2.9E-16 6.4E-21 113.6 9.6 165 6-174 37-226 (296)
258 PRK12739 elongation factor G; 99.7 2.4E-15 5.3E-20 125.8 15.9 116 6-127 6-139 (691)
259 KOG0462 Elongation factor-type 99.7 1.3E-15 2.8E-20 119.2 12.9 163 5-171 57-236 (650)
260 KOG1191 Mitochondrial GTPase [ 99.7 1.6E-15 3.4E-20 117.5 11.5 166 7-174 267-454 (531)
261 TIGR00484 EF-G translation elo 99.6 7.6E-15 1.7E-19 122.9 15.4 142 6-155 8-171 (689)
262 COG4917 EutP Ethanolamine util 99.6 1.6E-15 3.6E-20 96.6 7.8 137 9-167 2-143 (148)
263 PRK09602 translation-associate 99.6 2.3E-14 5.1E-19 112.0 15.5 83 9-91 2-113 (396)
264 PF09439 SRPRB: Signal recogni 99.6 1.1E-15 2.3E-20 106.3 7.1 117 8-128 3-127 (181)
265 KOG1490 GTP-binding protein CR 99.6 6E-15 1.3E-19 114.5 10.9 166 5-173 165-344 (620)
266 COG0481 LepA Membrane GTPase L 99.6 3.3E-14 7.1E-19 109.9 13.7 161 6-172 7-188 (603)
267 PRK09866 hypothetical protein; 99.6 1E-13 2.2E-18 111.8 16.8 109 57-167 230-350 (741)
268 PRK00007 elongation factor G; 99.6 4.8E-14 1E-18 118.0 15.3 143 5-155 7-171 (693)
269 TIGR00503 prfC peptide chain r 99.6 2.4E-14 5.2E-19 115.8 13.0 118 6-127 9-146 (527)
270 PRK12740 elongation factor G; 99.6 3.6E-14 7.7E-19 118.8 14.2 108 14-127 1-126 (668)
271 PTZ00258 GTP-binding protein; 99.6 1.1E-13 2.4E-18 107.3 13.5 86 6-91 19-126 (390)
272 KOG0090 Signal recognition par 99.6 1E-13 2.2E-18 96.7 11.3 154 9-168 39-237 (238)
273 PRK14845 translation initiatio 99.5 2.8E-13 6E-18 116.0 15.6 146 19-171 472-674 (1049)
274 cd01853 Toc34_like Toc34-like 99.5 3.1E-13 6.8E-18 99.6 13.6 122 5-129 28-165 (249)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.1E-13 1.3E-17 99.6 14.5 127 4-132 34-172 (313)
276 PF04548 AIG1: AIG1 family; I 99.5 7.7E-13 1.7E-17 95.7 14.3 162 9-174 1-190 (212)
277 COG2895 CysN GTPases - Sulfate 99.5 3.5E-13 7.6E-18 100.8 11.9 150 6-160 4-193 (431)
278 TIGR00101 ureG urease accessor 99.5 3.7E-13 8E-18 96.2 11.6 102 57-169 92-195 (199)
279 COG1217 TypA Predicted membran 99.5 3.8E-13 8.1E-18 103.9 12.0 160 8-171 5-196 (603)
280 TIGR00157 ribosome small subun 99.5 1E-13 2.2E-18 102.2 8.6 96 68-167 24-120 (245)
281 cd00066 G-alpha G protein alph 99.5 1.2E-12 2.5E-17 100.2 14.4 123 49-173 155-314 (317)
282 TIGR00490 aEF-2 translation el 99.5 1.1E-13 2.5E-18 116.2 9.7 118 6-127 17-152 (720)
283 KOG3905 Dynein light intermedi 99.5 8.8E-13 1.9E-17 97.7 13.0 163 7-172 51-292 (473)
284 PF05783 DLIC: Dynein light in 99.5 1.2E-12 2.5E-17 104.0 14.3 164 7-173 24-267 (472)
285 KOG0461 Selenocysteine-specifi 99.5 1.6E-12 3.5E-17 97.1 13.6 161 6-171 5-194 (522)
286 COG0378 HypB Ni2+-binding GTPa 99.5 4.5E-13 9.7E-18 92.7 9.2 150 8-169 13-200 (202)
287 PLN00116 translation elongatio 99.5 3.7E-13 7.9E-18 114.8 10.1 119 4-126 15-163 (843)
288 PRK09601 GTP-binding protein Y 99.5 4.3E-12 9.2E-17 97.5 14.8 83 9-91 3-107 (364)
289 PRK09435 membrane ATPase/prote 99.5 1.4E-12 3.1E-17 99.4 12.1 103 57-170 149-260 (332)
290 PF05049 IIGP: Interferon-indu 99.5 8.1E-13 1.7E-17 101.5 10.7 162 6-174 33-222 (376)
291 smart00275 G_alpha G protein a 99.5 3.3E-12 7.1E-17 98.5 14.1 125 47-173 176-337 (342)
292 COG5257 GCD11 Translation init 99.5 3.3E-13 7E-18 99.8 8.1 164 7-172 9-204 (415)
293 PRK07560 elongation factor EF- 99.4 1.5E-12 3.2E-17 109.8 12.2 117 6-126 18-152 (731)
294 PTZ00416 elongation factor 2; 99.4 6.6E-13 1.4E-17 113.1 10.0 117 6-126 17-157 (836)
295 TIGR00073 hypB hydrogenase acc 99.4 2.4E-12 5.3E-17 92.9 11.5 150 6-168 20-205 (207)
296 KOG0458 Elongation factor 1 al 99.4 2.4E-12 5.2E-17 101.9 12.2 152 6-161 175-373 (603)
297 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.4E-12 7.4E-17 93.2 12.3 138 7-156 38-182 (225)
298 PRK13768 GTPase; Provisional 99.4 2E-12 4.3E-17 95.9 10.7 112 58-170 98-247 (253)
299 KOG1532 GTPase XAB1, interacts 99.4 9E-13 1.9E-17 95.6 6.8 116 57-174 116-268 (366)
300 cd01900 YchF YchF subfamily. 99.4 6.6E-12 1.4E-16 93.5 10.7 81 11-91 1-103 (274)
301 KOG1707 Predicted Ras related/ 99.4 2.8E-11 6.2E-16 95.9 14.7 160 5-169 422-582 (625)
302 PF03029 ATP_bind_1: Conserved 99.4 5.6E-13 1.2E-17 97.7 4.9 112 58-169 92-236 (238)
303 TIGR02836 spore_IV_A stage IV 99.4 6.3E-11 1.4E-15 91.4 15.8 153 7-164 16-231 (492)
304 PF00350 Dynamin_N: Dynamin fa 99.4 1.5E-11 3.3E-16 85.8 11.6 63 58-123 102-168 (168)
305 smart00010 small_GTPase Small 99.4 1.7E-11 3.7E-16 81.1 11.1 114 9-159 1-115 (124)
306 KOG1144 Translation initiation 99.4 6.6E-12 1.4E-16 101.8 10.5 165 7-175 474-692 (1064)
307 PF00735 Septin: Septin; Inte 99.3 3.9E-11 8.5E-16 90.0 11.9 141 7-152 3-183 (281)
308 TIGR00750 lao LAO/AO transport 99.3 4.8E-11 1E-15 90.8 12.0 104 56-170 126-238 (300)
309 COG1703 ArgK Putative periplas 99.3 4.2E-11 9.1E-16 88.2 10.8 157 5-172 48-256 (323)
310 COG3276 SelB Selenocysteine-sp 99.3 4.7E-11 1E-15 92.1 11.6 155 10-170 2-162 (447)
311 KOG0082 G-protein alpha subuni 99.3 1.4E-10 3E-15 88.2 13.3 130 42-173 182-347 (354)
312 COG0480 FusA Translation elong 99.3 5.7E-11 1.2E-15 98.4 12.2 118 6-128 8-143 (697)
313 smart00053 DYNc Dynamin, GTPas 99.3 1E-10 2.2E-15 85.6 11.4 69 57-128 125-207 (240)
314 PF03308 ArgK: ArgK protein; 99.3 4.8E-12 1E-16 91.8 4.4 153 6-170 27-230 (266)
315 PRK10463 hydrogenase nickel in 99.3 3.1E-11 6.7E-16 89.9 8.6 55 114-168 231-287 (290)
316 TIGR00993 3a0901s04IAP86 chlor 99.3 2.5E-10 5.5E-15 92.8 14.4 121 6-128 116-251 (763)
317 KOG1486 GTP-binding protein DR 99.3 5.7E-10 1.2E-14 80.3 14.3 97 8-106 62-166 (364)
318 KOG3886 GTP-binding protein [S 99.3 1.3E-11 2.8E-16 87.4 5.9 147 8-155 4-164 (295)
319 COG0012 Predicted GTPase, prob 99.2 3.7E-10 8.1E-15 85.9 13.9 84 8-91 2-108 (372)
320 cd01855 YqeH YqeH. YqeH is an 99.2 5.9E-11 1.3E-15 84.6 9.2 110 70-198 24-141 (190)
321 COG4108 PrfC Peptide chain rel 99.2 2E-10 4.3E-15 88.5 11.3 134 7-146 11-164 (528)
322 KOG0410 Predicted GTP binding 99.2 2E-11 4.2E-16 90.6 5.5 157 6-174 176-345 (410)
323 COG0050 TufB GTPases - transla 99.2 3.1E-10 6.7E-15 83.4 10.5 143 6-154 10-177 (394)
324 cd01859 MJ1464 MJ1464. This f 99.2 7E-11 1.5E-15 81.5 6.6 94 71-170 3-96 (156)
325 KOG0468 U5 snRNP-specific prot 99.1 5E-10 1.1E-14 90.3 10.0 117 5-125 125-261 (971)
326 PRK12289 GTPase RsgA; Reviewed 99.1 3E-10 6.5E-15 87.7 7.9 91 73-168 82-173 (352)
327 KOG1954 Endocytosis/signaling 99.1 4.7E-10 1E-14 84.8 8.4 124 4-130 54-228 (532)
328 KOG0705 GTPase-activating prot 99.1 6E-10 1.3E-14 88.0 8.4 161 7-174 29-193 (749)
329 PRK12288 GTPase RsgA; Reviewed 99.1 1E-09 2.2E-14 84.7 9.0 87 78-167 118-205 (347)
330 KOG1547 Septin CDC10 and relat 99.1 4.3E-09 9.3E-14 75.3 11.1 146 7-157 45-230 (336)
331 COG5019 CDC3 Septin family pro 99.0 7.3E-09 1.6E-13 78.6 12.5 139 6-149 21-200 (373)
332 COG5192 BMS1 GTP-binding prote 99.0 2.8E-09 6E-14 84.9 10.2 138 6-155 67-211 (1077)
333 PF00503 G-alpha: G-protein al 99.0 1.2E-08 2.6E-13 80.6 13.6 125 43-169 223-389 (389)
334 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.4E-09 5.2E-14 80.9 8.7 88 75-167 73-161 (287)
335 KOG2655 Septin family protein 99.0 1.7E-08 3.8E-13 77.0 12.9 145 6-155 19-202 (366)
336 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.7E-09 3.8E-14 74.6 7.1 111 77-199 5-117 (157)
337 cd01849 YlqF_related_GTPase Yl 99.0 1.9E-09 4.1E-14 74.3 7.2 114 82-199 1-115 (155)
338 TIGR03597 GTPase_YqeH ribosome 99.0 2.6E-09 5.5E-14 83.3 8.4 95 67-168 50-151 (360)
339 cd01856 YlqF YlqF. Proteins o 99.0 3.7E-09 8.1E-14 74.0 7.6 119 73-199 12-130 (171)
340 KOG2486 Predicted GTPase [Gene 99.0 1.8E-09 4E-14 78.7 6.1 154 5-167 133-313 (320)
341 PRK00098 GTPase RsgA; Reviewed 98.9 4.5E-09 9.8E-14 79.9 8.3 86 77-166 77-163 (298)
342 COG5258 GTPBP1 GTPase [General 98.9 2.7E-08 5.8E-13 75.9 11.5 161 5-169 114-338 (527)
343 TIGR00092 GTP-binding protein 98.9 1.2E-08 2.5E-13 78.8 7.9 83 9-91 3-108 (368)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.8E-09 1.7E-13 70.1 6.3 54 10-67 85-138 (141)
345 KOG1491 Predicted GTP-binding 98.8 5.5E-09 1.2E-13 78.3 5.7 86 6-91 18-125 (391)
346 cd04178 Nucleostemin_like Nucl 98.8 1.2E-08 2.5E-13 71.4 6.6 55 7-66 116-171 (172)
347 KOG0448 Mitofusin 1 GTPase, in 98.8 1E-07 2.2E-12 77.5 12.4 120 6-129 107-277 (749)
348 KOG0465 Mitochondrial elongati 98.8 4.7E-08 1E-12 78.4 10.1 117 6-126 37-169 (721)
349 TIGR03596 GTPase_YlqF ribosome 98.8 3.2E-08 6.9E-13 74.6 8.7 118 74-199 15-133 (276)
350 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.2E-08 4.8E-13 69.1 7.0 55 7-66 101-156 (157)
351 KOG0460 Mitochondrial translat 98.8 4.2E-08 9.1E-13 73.7 8.4 165 6-173 52-244 (449)
352 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.8E-08 6E-13 75.3 7.6 118 74-199 18-136 (287)
353 KOG0467 Translation elongation 98.8 2.4E-08 5.3E-13 81.8 7.6 118 4-125 5-136 (887)
354 KOG0463 GTP-binding protein GP 98.8 1E-07 2.2E-12 72.7 10.1 160 7-174 132-361 (641)
355 KOG1143 Predicted translation 98.7 6.3E-08 1.4E-12 73.7 8.5 155 7-165 166-383 (591)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.7E-08 8E-13 66.7 6.3 77 75-157 6-84 (141)
357 TIGR03348 VI_IcmF type VI secr 98.7 2.4E-07 5.2E-12 82.3 12.2 114 11-129 114-259 (1169)
358 KOG3887 Predicted small GTPase 98.7 2.7E-07 5.7E-12 66.4 9.9 161 8-174 27-206 (347)
359 PF09547 Spore_IV_A: Stage IV 98.7 1.9E-06 4.2E-11 67.1 15.3 152 8-164 17-231 (492)
360 TIGR03596 GTPase_YlqF ribosome 98.7 6.4E-08 1.4E-12 72.9 7.2 57 6-67 116-173 (276)
361 PRK09563 rbgA GTPase YlqF; Rev 98.7 8.7E-08 1.9E-12 72.6 7.8 58 6-68 119-177 (287)
362 cd01856 YlqF YlqF. Proteins o 98.7 6.9E-08 1.5E-12 67.6 6.7 57 6-67 113-170 (171)
363 PRK13796 GTPase YqeH; Provisio 98.7 1E-07 2.2E-12 74.6 8.2 93 69-168 58-157 (365)
364 COG1161 Predicted GTPases [Gen 98.7 5.7E-08 1.2E-12 74.6 6.3 57 7-68 131-188 (322)
365 cd01855 YqeH YqeH. YqeH is an 98.7 5.5E-08 1.2E-12 69.3 5.7 54 8-66 127-189 (190)
366 KOG0466 Translation initiation 98.6 1.9E-08 4.2E-13 74.5 3.0 164 7-172 37-243 (466)
367 KOG1487 GTP-binding protein DR 98.6 7.8E-07 1.7E-11 64.7 11.0 89 9-99 60-155 (358)
368 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3E-12 65.0 6.9 56 7-66 100-155 (156)
369 KOG0464 Elongation factor G [T 98.6 3.3E-08 7.2E-13 76.2 3.8 132 6-145 35-184 (753)
370 COG1618 Predicted nucleotide k 98.6 3.4E-06 7.4E-11 57.1 12.8 148 6-170 3-176 (179)
371 PRK10416 signal recognition pa 98.6 6.1E-07 1.3E-11 68.7 10.2 95 56-163 196-303 (318)
372 PF03193 DUF258: Protein of un 98.6 4.3E-08 9.4E-13 67.1 3.5 59 9-70 36-100 (161)
373 KOG0099 G protein subunit Galp 98.6 3.8E-07 8.3E-12 66.3 8.3 80 45-126 192-282 (379)
374 cd01849 YlqF_related_GTPase Yl 98.6 1.9E-07 4.2E-12 64.2 6.4 56 6-66 98-154 (155)
375 cd01851 GBP Guanylate-binding 98.6 2.2E-06 4.7E-11 62.6 12.1 88 6-93 5-104 (224)
376 KOG0085 G protein subunit Galp 98.6 1.8E-07 3.8E-12 66.9 5.8 116 57-172 199-351 (359)
377 PRK01889 GTPase RsgA; Reviewed 98.5 5E-07 1.1E-11 70.4 8.5 84 77-166 109-193 (356)
378 KOG4273 Uncharacterized conser 98.5 1.8E-06 3.9E-11 62.5 10.5 164 9-174 5-226 (418)
379 PRK12288 GTPase RsgA; Reviewed 98.5 3.3E-07 7.1E-12 71.0 6.4 58 11-71 208-271 (347)
380 PRK14974 cell division protein 98.5 1.1E-06 2.3E-11 67.7 8.7 95 57-164 223-324 (336)
381 TIGR00064 ftsY signal recognit 98.5 1.2E-06 2.6E-11 65.8 8.5 95 56-163 154-261 (272)
382 cd03112 CobW_like The function 98.5 1.2E-06 2.7E-11 60.4 7.9 64 56-125 86-158 (158)
383 TIGR01425 SRP54_euk signal rec 98.4 4.1E-06 8.9E-11 66.3 11.3 85 56-150 182-272 (429)
384 KOG0447 Dynamin-like GTP bindi 98.4 9.9E-06 2.1E-10 65.0 12.6 90 58-150 413-521 (980)
385 KOG0459 Polypeptide release fa 98.4 1.4E-06 3E-11 67.1 6.6 154 6-163 77-279 (501)
386 TIGR00157 ribosome small subun 98.3 1.2E-06 2.6E-11 64.9 6.0 57 10-70 122-184 (245)
387 TIGR03597 GTPase_YqeH ribosome 98.3 1.2E-06 2.6E-11 68.4 6.2 56 9-69 155-216 (360)
388 PRK13796 GTPase YqeH; Provisio 98.3 1E-06 2.2E-11 69.0 5.5 55 9-68 161-221 (365)
389 PRK12289 GTPase RsgA; Reviewed 98.3 1.5E-06 3.2E-11 67.4 6.2 56 11-69 175-236 (352)
390 PF03266 NTPase_1: NTPase; In 98.3 3.5E-06 7.5E-11 58.7 6.9 135 10-158 1-163 (168)
391 COG1162 Predicted GTPases [Gen 98.3 1.8E-06 3.9E-11 64.6 5.4 59 10-71 166-230 (301)
392 COG3523 IcmF Type VI protein s 98.2 6.8E-06 1.5E-10 72.0 9.1 115 11-129 128-272 (1188)
393 COG1162 Predicted GTPases [Gen 98.2 1.7E-05 3.6E-10 59.6 9.6 93 74-169 73-166 (301)
394 COG0523 Putative GTPases (G3E 98.2 4.7E-05 1E-09 58.4 12.2 144 11-163 4-194 (323)
395 PRK14722 flhF flagellar biosyn 98.2 1.3E-05 2.8E-10 62.5 9.3 139 9-151 138-315 (374)
396 PRK00098 GTPase RsgA; Reviewed 98.2 4.1E-06 8.9E-11 63.8 5.9 57 10-69 166-228 (298)
397 PRK13695 putative NTPase; Prov 98.2 8E-05 1.7E-09 52.3 12.0 58 102-169 115-172 (174)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5E-06 1.1E-10 63.1 5.8 59 9-70 162-226 (287)
399 KOG1424 Predicted GTP-binding 98.1 4E-06 8.7E-11 66.5 5.1 55 8-67 314-369 (562)
400 cd03115 SRP The signal recogni 98.1 3.7E-05 8.1E-10 53.8 8.9 83 57-149 83-171 (173)
401 KOG1534 Putative transcription 98.0 1.2E-05 2.5E-10 57.0 5.4 71 58-128 99-179 (273)
402 PRK11537 putative GTP-binding 98.0 9.6E-05 2.1E-09 56.8 10.9 85 57-151 91-186 (318)
403 cd03114 ArgK-like The function 98.0 2.2E-05 4.8E-10 53.5 6.6 58 56-124 91-148 (148)
404 PF11111 CENP-M: Centromere pr 98.0 0.00064 1.4E-08 46.9 13.5 145 6-174 13-157 (176)
405 PRK14721 flhF flagellar biosyn 98.0 3E-05 6.4E-10 61.5 8.1 137 9-158 192-365 (420)
406 PF00448 SRP54: SRP54-type pro 98.0 1.9E-05 4.2E-10 56.4 5.9 84 57-151 84-174 (196)
407 PRK11889 flhF flagellar biosyn 98.0 0.00017 3.7E-09 56.5 11.1 85 57-151 321-411 (436)
408 PRK12727 flagellar biosynthesi 97.9 0.00019 4.1E-09 58.3 11.2 91 56-158 428-523 (559)
409 PRK00771 signal recognition pa 97.9 2.8E-05 6.1E-10 62.0 6.3 86 57-152 176-267 (437)
410 PRK06995 flhF flagellar biosyn 97.9 8.3E-05 1.8E-09 60.0 8.7 90 57-158 335-430 (484)
411 COG3640 CooC CO dehydrogenase 97.9 0.00015 3.3E-09 52.3 9.0 62 59-126 136-198 (255)
412 KOG2484 GTPase [General functi 97.9 1.1E-05 2.4E-10 62.1 3.3 57 6-67 250-307 (435)
413 cd04178 Nucleostemin_like Nucl 97.9 2.6E-05 5.7E-10 54.5 4.9 45 82-128 1-45 (172)
414 COG1419 FlhF Flagellar GTP-bin 97.9 0.00025 5.4E-09 55.4 10.3 154 9-172 204-396 (407)
415 PRK12723 flagellar biosynthesi 97.9 0.00034 7.4E-09 55.1 11.2 91 56-158 254-351 (388)
416 PRK14723 flhF flagellar biosyn 97.8 0.00026 5.6E-09 60.0 11.0 139 10-158 187-362 (767)
417 TIGR00959 ffh signal recogniti 97.8 0.00018 3.9E-09 57.4 9.6 86 57-152 183-274 (428)
418 KOG2485 Conserved ATP/GTP bind 97.8 3.7E-05 8E-10 57.6 5.4 61 5-67 140-206 (335)
419 cd02038 FleN-like FleN is a me 97.8 0.00013 2.8E-09 49.2 7.7 106 12-125 4-109 (139)
420 PRK05703 flhF flagellar biosyn 97.8 0.00014 3.1E-09 58.1 8.7 90 57-158 300-396 (424)
421 PRK12726 flagellar biosynthesi 97.8 0.00014 3E-09 56.7 8.1 91 57-159 286-382 (407)
422 PRK12724 flagellar biosynthesi 97.8 0.00011 2.4E-09 58.0 7.6 133 9-151 224-393 (432)
423 PF05621 TniB: Bacterial TniB 97.8 0.00018 3.8E-09 54.2 8.2 107 3-123 56-190 (302)
424 PRK10867 signal recognition pa 97.8 0.00022 4.7E-09 57.0 9.1 86 57-152 184-275 (433)
425 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00016 3.5E-09 40.2 5.7 46 78-124 11-58 (58)
426 cd03111 CpaE_like This protein 97.7 0.00022 4.8E-09 45.7 7.2 102 12-122 3-106 (106)
427 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00031 6.8E-09 43.7 7.7 70 11-94 2-72 (99)
428 cd02042 ParA ParA and ParB of 97.7 0.00027 5.9E-09 45.0 6.8 82 11-104 2-84 (104)
429 PRK06731 flhF flagellar biosyn 97.7 0.00062 1.3E-08 51.1 9.5 132 9-151 76-245 (270)
430 KOG0469 Elongation factor 2 [T 97.6 0.00019 4E-09 57.4 6.8 115 7-125 18-162 (842)
431 KOG3859 Septins (P-loop GTPase 97.6 8E-05 1.7E-09 55.1 4.4 61 6-66 40-104 (406)
432 PF13207 AAA_17: AAA domain; P 97.6 5.3E-05 1.1E-09 49.7 3.1 22 10-31 1-22 (121)
433 COG1161 Predicted GTPases [Gen 97.6 0.00015 3.2E-09 55.9 5.3 129 63-198 16-146 (322)
434 COG0563 Adk Adenylate kinase a 97.6 6.1E-05 1.3E-09 52.9 2.9 23 9-31 1-23 (178)
435 PRK08118 topology modulation p 97.5 7.1E-05 1.5E-09 52.1 3.0 23 9-31 2-24 (167)
436 TIGR02475 CobW cobalamin biosy 97.5 0.0017 3.6E-08 50.6 10.7 22 10-31 6-27 (341)
437 PF03215 Rad17: Rad17 cell cyc 97.5 0.00077 1.7E-08 55.2 9.1 22 10-31 47-68 (519)
438 PRK07261 topology modulation p 97.5 7.9E-05 1.7E-09 52.1 3.0 22 9-30 1-22 (171)
439 PF13555 AAA_29: P-loop contai 97.5 0.0001 2.2E-09 42.0 2.9 21 10-30 25-45 (62)
440 PF13671 AAA_33: AAA domain; P 97.5 9.7E-05 2.1E-09 49.9 2.9 20 11-30 2-21 (143)
441 cd00009 AAA The AAA+ (ATPases 97.5 0.00089 1.9E-08 44.9 7.6 24 9-32 20-43 (151)
442 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0023 4.9E-08 45.0 9.7 23 10-32 27-49 (177)
443 PF13521 AAA_28: AAA domain; P 97.4 8.9E-05 1.9E-09 51.4 2.3 22 10-31 1-22 (163)
444 cd03110 Fer4_NifH_child This p 97.4 0.0019 4.1E-08 45.4 9.0 86 55-149 91-176 (179)
445 cd02019 NK Nucleoside/nucleoti 97.4 0.00018 4E-09 42.2 2.8 21 11-31 2-22 (69)
446 TIGR00235 udk uridine kinase. 97.4 0.00021 4.5E-09 51.6 3.7 29 1-31 1-29 (207)
447 COG1126 GlnQ ABC-type polar am 97.4 0.00024 5.3E-09 50.8 3.8 26 149-174 163-188 (240)
448 PF00005 ABC_tran: ABC transpo 97.3 0.00021 4.6E-09 47.9 3.2 23 10-32 13-35 (137)
449 COG1136 SalX ABC-type antimicr 97.3 0.00024 5.1E-09 51.6 3.5 23 11-33 34-56 (226)
450 COG3845 ABC-type uncharacteriz 97.3 0.0018 4E-08 51.7 8.4 54 70-125 148-202 (501)
451 PRK06217 hypothetical protein; 97.3 0.00022 4.9E-09 50.4 3.1 23 9-31 2-24 (183)
452 KOG3929 Uncharacterized conser 97.3 0.0001 2.3E-09 53.9 1.2 147 6-155 43-237 (363)
453 COG1116 TauB ABC-type nitrate/ 97.3 0.00031 6.7E-09 51.3 3.5 23 11-33 32-54 (248)
454 smart00072 GuKc Guanylate kina 97.3 0.0027 6E-08 44.9 8.4 22 11-32 5-26 (184)
455 PRK01889 GTPase RsgA; Reviewed 97.3 0.0003 6.5E-09 55.0 3.6 24 9-32 196-219 (356)
456 PF13238 AAA_18: AAA domain; P 97.2 0.00026 5.7E-09 46.7 2.8 21 11-31 1-21 (129)
457 PF03205 MobB: Molybdopterin g 97.2 0.00029 6.3E-09 47.5 2.9 22 10-31 2-23 (140)
458 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0013 2.8E-08 43.8 5.9 22 10-31 24-45 (133)
459 cd02036 MinD Bacterial cell di 97.2 0.011 2.4E-07 41.3 11.1 84 58-148 64-147 (179)
460 KOG3347 Predicted nucleotide k 97.2 0.00023 5.1E-09 47.8 2.3 25 6-30 5-29 (176)
461 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0026 5.7E-08 51.6 8.3 88 83-170 196-284 (634)
462 KOG0446 Vacuolar sorting prote 97.2 0.00015 3.2E-09 60.8 1.4 103 58-162 133-248 (657)
463 COG4598 HisP ABC-type histidin 97.2 0.00094 2E-08 46.6 5.0 27 149-175 179-205 (256)
464 PRK03839 putative kinase; Prov 97.2 0.00033 7.1E-09 49.4 2.9 21 10-30 2-22 (180)
465 PRK14738 gmk guanylate kinase; 97.2 0.00063 1.4E-08 49.1 4.4 26 6-31 11-36 (206)
466 KOG0780 Signal recognition par 97.2 0.0021 4.5E-08 50.0 7.2 93 6-98 99-231 (483)
467 cd01131 PilT Pilus retraction 97.2 0.0018 3.9E-08 46.4 6.6 22 11-32 4-25 (198)
468 COG0194 Gmk Guanylate kinase [ 97.2 0.00025 5.5E-09 49.5 2.0 24 9-32 5-28 (191)
469 PF00004 AAA: ATPase family as 97.1 0.0004 8.7E-09 46.0 3.0 21 11-31 1-21 (132)
470 smart00382 AAA ATPases associa 97.1 0.00043 9.4E-09 46.0 3.1 25 9-33 3-27 (148)
471 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00041 8.8E-09 44.3 2.7 20 10-29 17-36 (107)
472 PRK14530 adenylate kinase; Pro 97.1 0.00039 8.4E-09 50.5 3.0 22 9-30 4-25 (215)
473 cd00071 GMPK Guanosine monopho 97.1 0.0004 8.7E-09 46.7 2.9 21 11-31 2-22 (137)
474 PRK10078 ribose 1,5-bisphospho 97.1 0.00044 9.4E-09 49.1 3.1 22 10-31 4-25 (186)
475 PRK00131 aroK shikimate kinase 97.1 0.00049 1.1E-08 48.0 3.4 26 1-30 1-26 (175)
476 PRK10751 molybdopterin-guanine 97.1 0.00055 1.2E-08 47.8 3.5 24 8-31 6-29 (173)
477 PF04665 Pox_A32: Poxvirus A32 97.1 0.00041 8.9E-09 50.9 3.0 26 6-31 11-36 (241)
478 TIGR02322 phosphon_PhnN phosph 97.1 0.0004 8.6E-09 48.9 2.7 22 10-31 3-24 (179)
479 cd01130 VirB11-like_ATPase Typ 97.1 0.00048 1E-08 48.9 3.1 24 9-32 26-49 (186)
480 PRK08233 hypothetical protein; 97.1 0.00057 1.2E-08 48.1 3.3 24 8-31 3-26 (182)
481 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0036 7.7E-08 47.0 7.6 23 10-32 82-104 (264)
482 PRK05480 uridine/cytidine kina 97.1 0.00072 1.6E-08 48.9 3.8 25 7-31 5-29 (209)
483 PRK14737 gmk guanylate kinase; 97.1 0.00052 1.1E-08 48.7 2.9 24 9-32 5-28 (186)
484 cd02023 UMPK Uridine monophosp 97.1 0.00045 9.8E-09 49.5 2.6 21 11-31 2-22 (198)
485 TIGR03263 guanyl_kin guanylate 97.1 0.00053 1.2E-08 48.3 2.9 22 10-31 3-24 (180)
486 PRK05057 aroK shikimate kinase 97.1 0.00066 1.4E-08 47.5 3.4 23 9-31 5-27 (172)
487 PRK13949 shikimate kinase; Pro 97.0 0.00057 1.2E-08 47.7 3.0 21 10-30 3-23 (169)
488 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00051 1.1E-08 48.6 2.8 21 9-29 4-24 (188)
489 KOG2423 Nucleolar GTPase [Gene 97.0 0.00028 6.1E-09 54.7 1.6 57 6-66 305-361 (572)
490 PRK02496 adk adenylate kinase; 97.0 0.00059 1.3E-08 48.3 3.1 22 9-30 2-23 (184)
491 PRK14532 adenylate kinase; Pro 97.0 0.00054 1.2E-08 48.6 2.9 21 10-30 2-22 (188)
492 COG1936 Predicted nucleotide k 97.0 0.00055 1.2E-08 47.2 2.7 21 9-29 1-21 (180)
493 PRK00625 shikimate kinase; Pro 97.0 0.0006 1.3E-08 47.8 2.9 21 10-30 2-22 (173)
494 cd03238 ABC_UvrA The excision 97.0 0.00069 1.5E-08 47.6 3.1 22 9-30 22-43 (176)
495 PTZ00088 adenylate kinase 1; P 97.0 0.00062 1.4E-08 49.9 3.0 24 7-30 5-28 (229)
496 COG3911 Predicted ATPase [Gene 97.0 0.0011 2.4E-08 44.5 3.8 36 2-37 3-38 (183)
497 COG3638 ABC-type phosphate/pho 97.0 0.00064 1.4E-08 49.3 2.9 20 11-30 33-52 (258)
498 COG3840 ThiQ ABC-type thiamine 97.0 0.00087 1.9E-08 46.8 3.4 23 10-32 27-49 (231)
499 COG0552 FtsY Signal recognitio 97.0 0.009 2E-07 45.7 9.0 144 6-162 137-327 (340)
500 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00099 2.1E-08 48.0 3.8 23 10-32 28-50 (205)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-45 Score=247.62 Aligned_cols=202 Identities=74% Similarity=1.190 Sum_probs=186.3
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|.+..+|.+||+|+|.+|+|||+|+.+|....+...+..|.+.++...++.++++.+++++|||+|+++|+++..++|++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 159 (203)
++++|+|||+++..||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++.+.|+.+++++ ++++||+++.+++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCC-CCCCCCCC
Q 028813 160 QAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV-AQKSGCCS 202 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~ 202 (203)
++|..|...+..++............+.+..++|. ...++||+
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence 99999999999888776655545566666666555 44455775
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-42 Score=231.72 Aligned_cols=197 Identities=45% Similarity=0.751 Sum_probs=178.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|..++|||||+-++..+.+.....+|.+-.+....+.+++..+++.||||+|+++|.++.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|||+++.+||..++.|+.++.+..+++.-+.||+||+|+.+.+.+..++.+.++...+..++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888888888999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCccccc-CCCCCCCCCCCC
Q 028813 166 AASIKDRMASQPSMNNARPPTVQIK-GQPVAQKSGCCS 202 (203)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~ 202 (203)
.+.+.....+.......++...... .++....++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 9999877766554433333334333 237788999997
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-39 Score=225.35 Aligned_cols=173 Identities=63% Similarity=1.080 Sum_probs=167.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+++|.++||||+|+.+|....+...+..+.++++...++..++..+.+++|||+|+++++++...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+++|||+++..+++.+..|+..++.+...++|.+||+||+|+...+.+..+..++++.++|+.++++||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 028813 164 AMAASIKDRMASQ 176 (203)
Q Consensus 164 ~l~~~~~~~~~~~ 176 (203)
.|.+.+..+....
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999999766554
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=221.51 Aligned_cols=196 Identities=38% Similarity=0.659 Sum_probs=169.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+|++++|..++||||||.+|....+...+.+|.+.++...++.+.+..+++++|||+|+++|+++...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|||+++..+|+...+|++.+...... +.-++||+||.||.+.+++..++.+..++++++.|+++||+.|.||.++|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999766554 4778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCC-CCcccccCCCCCCCC----CCCC
Q 028813 165 MAASIKDRMASQPSMNNAR-PPTVQIKGQPVAQKS----GCCS 202 (203)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~c~~ 202 (203)
|...+.+... ......+. ...+.+++.++.+++ +|||
T Consensus 180 Iaa~l~~~~~-~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C 221 (221)
T KOG0094|consen 180 IAAALPGMEV-LEILSKQESMVDINLKGSPNEQQASKPGLCSC 221 (221)
T ss_pred HHHhccCccc-cccccccccceeEEccCCCCcccccCCCCCCC
Confidence 8777765533 22122211 344444444444443 4998
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=213.95 Aligned_cols=199 Identities=46% Similarity=0.763 Sum_probs=174.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
...+.+||+++|.+|+|||||+.+|....+.+....+.+.++..+.+.+++.++++.||||+|+++|+.+...||+.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
+|+|||++.+++|..+..|++++..+.. .++..++|+||+|....+.+..++...|++++++-++++||++.+|++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999999999999977655 456678999999988788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccccCCCC--CCCCCCCC
Q 028813 163 MAMAASIKDRMASQPSMNNARPPTVQIKGQPV--AQKSGCCS 202 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~ 202 (203)
+.|..++.+--.-...........+...|..+ ...++||+
T Consensus 167 eelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs 208 (209)
T KOG0080|consen 167 EELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS 208 (209)
T ss_pred HHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence 99999998654444433444444555554444 33466886
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.8e-38 Score=223.19 Aligned_cols=165 Identities=50% Similarity=0.909 Sum_probs=151.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
++|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999988888888888888888999998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++.++ ++.++++||++|.|++++|.+|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766667999999999999877778888888888775 789999999999999999999999
Q ss_pred HHHHHh
Q 028813 168 SIKDRM 173 (203)
Q Consensus 168 ~~~~~~ 173 (203)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 7
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-37 Score=223.03 Aligned_cols=193 Identities=37% Similarity=0.676 Sum_probs=159.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888888877778877 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 162 (203)
||++++.+++.+..|+..+.... ....|+++|+||.|+.+.+....+++.+++..++ ++++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886432 2568999999999997666677888999999988 699999999999999999
Q ss_pred HHHHHHHHHHhccCCCCC-CCCCCcccccCCC-CCCCCCCC
Q 028813 163 MAMAASIKDRMASQPSMN-NARPPTVQIKGQP-VAQKSGCC 201 (203)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~c~ 201 (203)
++|.+.+.+..+..+... ....+.+....++ ++++.+||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999887655433222 2223333333333 33444566
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.4e-37 Score=222.12 Aligned_cols=199 Identities=46% Similarity=0.804 Sum_probs=166.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 35789999999999999999999999888777788888888888888988889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999777777778888888888999999999999999999999
Q ss_pred HHHHHHHHhccCC---CC--C----CCCCCcccccCCCCCCCCCCCCC
Q 028813 165 MAASIKDRMASQP---SM--N----NARPPTVQIKGQPVAQKSGCCST 203 (203)
Q Consensus 165 l~~~~~~~~~~~~---~~--~----~~~~~~~~~~~~~~~~~~~c~~~ 203 (203)
|.+.+.+...... .. . ......+......+.+++|||++
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216 (216)
T ss_pred HHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCcCC
Confidence 9998877543211 11 0 01111122233356678889875
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.7e-37 Score=217.34 Aligned_cols=170 Identities=44% Similarity=0.740 Sum_probs=154.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.+||+++|..++|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999999888777777777778778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|||++++.+++.+..|+.++.... .+.|++||+||.|+.+.+.+..++.+.++..+++++++|||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997665 46999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028813 165 MAASIKDRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
|.+.+..+...
T Consensus 162 l~~~i~~~~~~ 172 (189)
T cd04121 162 LARIVLMRHGR 172 (189)
T ss_pred HHHHHHHhcCC
Confidence 99988766553
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-37 Score=211.61 Aligned_cols=173 Identities=54% Similarity=0.854 Sum_probs=165.8
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.+.++.+||+++|.+++|||-|+.+|....+..+..+|.++++....+.++++.++.+||||+|+++|+.....+|+.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
++++|||++...+|+.+..|+.+++.+...+++++||+||+||.+.+.+..++.+.++.+.+..++++||++..+++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028813 163 MAMAASIKDRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
+.++..+.....+
T Consensus 169 ~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 169 ERVLTEIYKIVSK 181 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766554
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=208.96 Aligned_cols=200 Identities=36% Similarity=0.649 Sum_probs=172.7
Q ss_pred CCC-CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc
Q 028813 1 MNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (203)
Q Consensus 1 m~~-~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (203)
|+. .....+||+++|.+|+|||||++++.+..+...+..+.+.++-.+.+.+++..+.+.||||+|+++|.++-..+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 666 4478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC--ccCCHHHHHHHHHHhC-CcEEEeec
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN--KVVSYETAKAFADEIG-IPFMETSA 152 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (203)
.+|+.+++||++++.+++.+..|..++-.... ...|++|++||+|+... +.++....+.|+...+ +|||++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999855444 46899999999999653 6788999999998876 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCC
Q 028813 153 KDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 200 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 200 (203)
+...||.++|+.+.+.+..............+..+......+...++|
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c 208 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGC 208 (210)
T ss_pred cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCC
Confidence 999999999999999888775543333344555566555555555544
No 12
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-36 Score=216.21 Aligned_cols=190 Identities=47% Similarity=0.890 Sum_probs=162.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.+||+||+.++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 5666777677777778888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
+|++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++..++++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999766666777788888888999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813 168 SIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 201 (203)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 201 (203)
.+.....+.+..... +.+.-.+..+++++||
T Consensus 161 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGKF---KISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCcE---EeccccCcccccCCCC
Confidence 998776554433322 2555556777888898
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-37 Score=206.44 Aligned_cols=171 Identities=54% Similarity=0.895 Sum_probs=163.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
+.+.+|++++|..|+|||+|+.+|+...+.+.+..|.+.++....+.++++.+++++|||+|+++|++....+|+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++|||++.+++|..+..|+..++.+..++..++|++||+|+...+.++.++.++|++++++.++++||+++.|++|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028813 165 MAASIKDRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
....+.+..+.
T Consensus 163 ta~~Iy~~~q~ 173 (216)
T KOG0098|consen 163 TAKEIYRKIQD 173 (216)
T ss_pred HHHHHHHHHHh
Confidence 99988877654
No 14
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.7e-36 Score=219.14 Aligned_cols=187 Identities=33% Similarity=0.542 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+++|||||+++|..+.+.. ..++.+.++....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 45666555443332 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CccCCHHHHHHHHHHhC-----
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVSYETAKAFADEIG----- 144 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 144 (203)
|++++.+++.+..|+..+......+.|++||+||+|+.+ .+.+..++.+.++.+++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888877665556789999999999965 46678888999998876
Q ss_pred ---------CcEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813 145 ---------IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 201 (203)
Q Consensus 145 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 201 (203)
++|++|||++|.||+++|.++.+.+.+...++.. ..++....-..+.|+.+|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA-EANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh-hhhhhhccccCCCcccCCCCCC
Confidence 6899999999999999999999988876665543 2223333444567899999999
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=5.2e-36 Score=215.03 Aligned_cols=195 Identities=56% Similarity=0.889 Sum_probs=164.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 56799999999999999999999998887778888887777788888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.+++.+..|++.+.... ...|+++|+||+|+.+...+..++...++...+++++++|+++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999886654 368999999999997766667777888888889999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCccccc-CCCCCCCCCCC
Q 028813 166 AASIKDRMASQPSMNNARPPTVQIK-GQPVAQKSGCC 201 (203)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~ 201 (203)
.+.+..................... +...++++.||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 9999876555543333333333333 34446777777
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.9e-38 Score=202.72 Aligned_cols=197 Identities=57% Similarity=0.929 Sum_probs=173.8
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|....+..++.+|+|.+|+|||+|+.+|....+..++..+.++++...++.+++..+++.|||++|+++|+.+...+++.
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence 55666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
.+++++|||+++.++|..+..|++++..... ..|-++|+||.|.++.+.+..++.+.|+...++.+|++|++++.+++.
T Consensus 81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA 159 (198)
T ss_pred CceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence 9999999999999999999999999987766 588999999999999898999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-ccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813 161 AFMAMAASIKDRM-ASQPSMNNARPPTVQIKGQPVAQKSGCC 201 (203)
Q Consensus 161 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 201 (203)
.|.-|.+++.+.. .++. ...+...+..++.++..+ .||
T Consensus 160 mF~cit~qvl~~k~r~~~--~~~r~~~~~l~~n~~~~~-k~c 198 (198)
T KOG0079|consen 160 MFHCITKQVLQAKLRESV--EQQRADAVSLKDNSKSTK-KCC 198 (198)
T ss_pred HHHHHHHHHHHHHHhhcH--HHHhhcceEeccCCCccc-cCC
Confidence 9999999887665 2222 223344455554444444 666
No 17
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-35 Score=208.74 Aligned_cols=168 Identities=61% Similarity=0.971 Sum_probs=150.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887777788887777778888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|+++++++..+..|+..+........|+++++||.|+.+...+..+....++...+++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777677777888888889999999999999999999999999
Q ss_pred HHHHhccC
Q 028813 169 IKDRMASQ 176 (203)
Q Consensus 169 ~~~~~~~~ 176 (203)
+..+..+.
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 98765443
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-36 Score=197.35 Aligned_cols=175 Identities=49% Similarity=0.848 Sum_probs=167.2
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|++..++.+|++++|+.|+|||.|+++|....+......+.+.++....+.+.++.++++||||+|+++|++..+.+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+.+.++|||++++++|+.+..|+..++...+.++-+++++||.|+.+.+++...+...|++++.+.+.++|+++|++++|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028813 161 AFMAMAASIKDRMAS 175 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~ 175 (203)
.|-...+.+..+.+.
T Consensus 162 aFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 162 AFLKCARTILNKIES 176 (214)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999988888776553
No 19
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.5e-35 Score=211.23 Aligned_cols=185 Identities=31% Similarity=0.569 Sum_probs=154.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888776777665433 4456677878889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+.......++..++++++++||++|.|++++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988865542 4689999999999977666777777888888899999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCCC
Q 028813 167 ASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 202 (203)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 202 (203)
+.+..++.... + .......+..++.+|||
T Consensus 160 ~~l~~~~~~~~------~-~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQ------G-PKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccC------C-CcCCCCCcccccccCce
Confidence 98876655431 1 14455566666777776
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.6e-35 Score=205.89 Aligned_cols=164 Identities=50% Similarity=0.888 Sum_probs=149.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999988877777888777777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
+|++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++..+++..++++++++||++|.|+.++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776667899999999999877777888889999989999999999999999999999998
Q ss_pred HHHH
Q 028813 168 SIKD 171 (203)
Q Consensus 168 ~~~~ 171 (203)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7753
No 21
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-34 Score=209.03 Aligned_cols=171 Identities=46% Similarity=0.796 Sum_probs=150.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++++...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999998887777788887777777776 456789999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|||++++.+++.+..|+..+..... ...|+++|+||.|+.+...+..++...++..++++++++||++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998865543 45778999999999877777788888999999999999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 028813 165 MAASIKDRMASQP 177 (203)
Q Consensus 165 l~~~~~~~~~~~~ 177 (203)
|.+.+.++..+.+
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999987766543
No 22
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=7.1e-35 Score=203.84 Aligned_cols=166 Identities=67% Similarity=1.127 Sum_probs=150.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999988888888887777777888888889999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+......++...++..++++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766679999999999998766677777888888889999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988754
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=206.66 Aligned_cols=168 Identities=36% Similarity=0.648 Sum_probs=145.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 468999999999999999999999888777777766443 5667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|+|++++++++.+..|+..+.... ..+.|+++|+||.|+.+...+...+...++..++++++++||++|.|+.++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999886553 3478999999999987666666677778888888999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028813 166 AASIKDRMAS 175 (203)
Q Consensus 166 ~~~~~~~~~~ 175 (203)
.+.+.+..++
T Consensus 163 ~~~l~~~~~~ 172 (189)
T PTZ00369 163 VREIRKYLKE 172 (189)
T ss_pred HHHHHHHhhc
Confidence 9988766543
No 24
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.8e-34 Score=209.39 Aligned_cols=164 Identities=35% Similarity=0.592 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|.+|||||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.+||++|+..+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888889988888888887764 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
||++++++++.+..|+..+..... .+.|+++|+||.|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999876543 35689999999999777777888888999989999999999999999999999
Q ss_pred HHHHHHHH
Q 028813 165 MAASIKDR 172 (203)
Q Consensus 165 l~~~~~~~ 172 (203)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988754
No 25
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=191.04 Aligned_cols=173 Identities=52% Similarity=0.980 Sum_probs=164.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+|++++|...+|||||+.++.+..+......+.++++..+++--..+++++++|||+|+++++.+...+++++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 56899999999999999999999999999988899999999999988888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|++||+++.+++..++.|.-++....-.+.|+|+++||+|+.+++.+..+..+.++..+|..+|++||+.+.+++.+|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 028813 164 AMAASIKDRMASQ 176 (203)
Q Consensus 164 ~l~~~~~~~~~~~ 176 (203)
.|...+-+.+.+.
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998877654
No 26
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.4e-34 Score=200.77 Aligned_cols=163 Identities=53% Similarity=0.960 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999887777788877777777777777899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.+++.+..|+..+........|+++|+||+|+.+.+....+...+++..++++++++||++|.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999977666678999999999997776677777888888889999999999999999999999987
Q ss_pred HHH
Q 028813 169 IKD 171 (203)
Q Consensus 169 ~~~ 171 (203)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 653
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.6e-34 Score=202.71 Aligned_cols=164 Identities=32% Similarity=0.548 Sum_probs=145.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||++++..+.++..+.++.+.. ....+.+++..+.+.+||++|..++..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDA-YKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccce-EEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 4799999999999999999999998887777777633 345577788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..+++++++|||++|.|++++|++|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988886653 35799999999999977777888888899988999999999999999999999999
Q ss_pred HHHHHH
Q 028813 167 ASIKDR 172 (203)
Q Consensus 167 ~~~~~~ 172 (203)
+.+.+.
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 988764
No 28
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=193.94 Aligned_cols=201 Identities=41% Similarity=0.687 Sum_probs=175.5
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccC
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
-+-..+-++++++|.+-+|||+|++.|+.+.++.-..|+.+.++...-+.. ++..+++++|||+|+++|+++.+.++++
T Consensus 2 epif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 2 EPIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred CcceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence 455678899999999999999999999999999989999999988776665 5678999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
+-++++|||+++..+|+.++.|+.+...+.. +.++ +.+|++|+|+...+++..++.+.++..+++.++++|+++|.|+
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence 9999999999999999999999999877665 3344 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC--------CCCCCCCCcccccCCCCCCCCCCCC
Q 028813 159 EQAFMAMAASIKDRMASQP--------SMNNARPPTVQIKGQPVAQKSGCCS 202 (203)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~c~~ 202 (203)
+++|..|.+.+....++-. ....-+|..++.++--.+....|||
T Consensus 162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 9999999999988877621 1123556677777777777778888
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.2e-34 Score=201.11 Aligned_cols=163 Identities=87% Similarity=1.323 Sum_probs=148.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999888777778888777778888888888999999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
+|+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++..++++++++||++|.|++++|.+|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999997776567899999999999777777778888899889999999999999999999999998
Q ss_pred HHH
Q 028813 168 SIK 170 (203)
Q Consensus 168 ~~~ 170 (203)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.2e-34 Score=200.14 Aligned_cols=160 Identities=49% Similarity=0.919 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|..++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999888888888888887788888888899999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999877766679999999999998777777888888998889999999999999999999999864
No 31
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=8.2e-34 Score=202.92 Aligned_cols=188 Identities=32% Similarity=0.619 Sum_probs=152.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+|+|.+|+|||||+++|.++.+.. .+.++.+..+....+..++..+.+.+||++|..++...+..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 4667777667677888898889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ..+...++..++..++++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999886653 36899999999998542 23455667778888889999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813 164 AMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 201 (203)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 201 (203)
+|.+.+.+...+.. .+.+...+.. ++....++||
T Consensus 160 ~i~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~ 193 (193)
T cd04118 160 KVAEDFVSRANNQM--NTEKGVDLGQ--KKNSYFYSCC 193 (193)
T ss_pred HHHHHHHHhccccc--CCCCccccCC--cCCCCCCCCC
Confidence 99999876543321 1122222333 3445788888
No 32
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.3e-34 Score=202.26 Aligned_cols=162 Identities=32% Similarity=0.615 Sum_probs=144.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+++|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999998888888876444 466778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||++++.+++.+ ..|+..+....+ ..|++||+||.|+.+ .+.+..++.+++++++++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 789999977654 689999999999854 235788999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHH
Q 028813 152 AKDSTN-VEQAFMAMAASI 169 (203)
Q Consensus 152 a~~~~~-i~~~~~~l~~~~ 169 (203)
|++|.| |+++|..+++.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.9e-34 Score=200.79 Aligned_cols=159 Identities=34% Similarity=0.669 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+++|||||+.++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++++..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887554 456777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------cCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 89 DVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK----------VVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 89 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
|++++.+++.+ ..|+..+..... +.|++||+||+|+.+.. .+..++...++..+++ ++++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999976654 69999999999996542 4778889999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASI 169 (203)
Q Consensus 157 ~i~~~~~~l~~~~ 169 (203)
||+++|..+.+.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999865
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.4e-34 Score=202.17 Aligned_cols=167 Identities=44% Similarity=0.837 Sum_probs=147.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------CeEEEEEEEeCCCccccccchh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS 75 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 75 (203)
++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+||++|++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999998888888888877776666554 3568899999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
.+++++|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..++++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999886654 34689999999999987777777888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASIKDR 172 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~ 172 (203)
|.|++++|++|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 35
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=203.51 Aligned_cols=169 Identities=52% Similarity=0.893 Sum_probs=151.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|...+..++..++..+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887777778887777778888888889999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.+++.+..|+..+........|+++|+||.|+.+.+.+..++.++++..++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876666679999999999997777778888899999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 028813 166 AASIKDRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+.++..
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 998876544
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.7e-34 Score=198.51 Aligned_cols=163 Identities=56% Similarity=0.903 Sum_probs=148.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.+||+++|.++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999988877778888888888888888888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|+|++++.++..+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999877766799999999999977677777788888888889999999999999999999998
Q ss_pred HHH
Q 028813 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7.5e-34 Score=198.60 Aligned_cols=162 Identities=31% Similarity=0.706 Sum_probs=146.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999876543 4689999999999975556677778888888889999999999999999999
Q ss_pred HHHHHHH
Q 028813 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.4e-33 Score=197.44 Aligned_cols=166 Identities=54% Similarity=0.940 Sum_probs=149.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++....+.+||++|++++......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998887777778787887788888888889999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||.|+.+......++.+.++..++++++++|++.+.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999977666679999999999997666677788888888889999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 39
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=3e-33 Score=202.52 Aligned_cols=170 Identities=53% Similarity=0.824 Sum_probs=145.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....+||+|+|.+|+|||||+++|.+..+. .+.++.+.+.....+..++..+.+.+||+||.+++...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3457799999999999999999999987763 556677777777778888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQ-WLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
+|+|+|++++++++.+.. |...+.... ..+.|+++|+||+|+.....+..++...++..++++++++||+++.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999976 666665433 245799999999999776666777777888888999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028813 162 FMAMAASIKDRMA 174 (203)
Q Consensus 162 ~~~l~~~~~~~~~ 174 (203)
|++|.+.+.....
T Consensus 169 ~~~l~~~~~~~~~ 181 (211)
T PLN03118 169 FEELALKIMEVPS 181 (211)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999876543
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.1e-34 Score=200.41 Aligned_cols=165 Identities=28% Similarity=0.557 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|..++|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999888888899888888888888988899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
|++++.+++.+..|+..+........| ++|+||+|+... .....++.+.++..++++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776555566 678999998521 11223566778888899999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.+...
T Consensus 160 ~l~~~l~~~~~ 170 (182)
T cd04128 160 IVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHhcCC
Confidence 99998875433
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-33 Score=197.60 Aligned_cols=163 Identities=54% Similarity=0.955 Sum_probs=146.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999988887777777777777788888888889999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+........+++..+++ .++++||++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999776666799999999999987777777788888888875 6899999999999999999
Q ss_pred HHHH
Q 028813 165 MAAS 168 (203)
Q Consensus 165 l~~~ 168 (203)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 42
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.9e-33 Score=203.33 Aligned_cols=165 Identities=27% Similarity=0.548 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+++|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|+++|..+...++.++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4678999999999999999999999998888888887554 456778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|||++++.+++.+ ..|+..+....+ +.|++||+||+|+.+ .+.+..++.++++..+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999984 789999977654 689999999999854 256788899999999998 699999
Q ss_pred cCCCC-CHHHHHHHHHHHHHHH
Q 028813 152 AKDST-NVEQAFMAMAASIKDR 172 (203)
Q Consensus 152 a~~~~-~i~~~~~~l~~~~~~~ 172 (203)
|++|. |++++|..+...+.++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99997 8999999999988765
No 43
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-34 Score=187.12 Aligned_cols=173 Identities=48% Similarity=0.866 Sum_probs=161.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+++|..|+|||.|.++|..+-+++....+.+.++..+++.+++..+++.||||+|+++|+++...+++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|++||++...+|.-+.+|+.++..+....+--++|+||.|+.+.+++.....++|+......++++||++-++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999998887777899999999998889998889999999889999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 028813 164 AMAASIKDRMASQ 176 (203)
Q Consensus 164 ~l~~~~~~~~~~~ 176 (203)
.+...+.....+.
T Consensus 163 ~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 163 DLACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHHHhc
Confidence 9987776555443
No 44
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.9e-33 Score=200.47 Aligned_cols=163 Identities=29% Similarity=0.581 Sum_probs=141.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|..++|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 348999999999999999999999998888888877443 4456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhC-CcEEEeec
Q 028813 87 VYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSA 152 (203)
Q Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa 152 (203)
|||++++.+++.+. .|+..+.... .+.|++||+||.|+.+.. .+..++.++++..++ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 5888776554 469999999999996432 255677888888888 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~ 171 (203)
++|.|++++|.+|.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 45
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.5e-33 Score=196.10 Aligned_cols=161 Identities=46% Similarity=0.865 Sum_probs=152.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|+++||||||+++|.+..++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988898998889999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
++++++++.+..|+..+........|+++++||.|+.+.+.+..++.++++..++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888886799999999999987778899999999999999999999999999999999999887
Q ss_pred H
Q 028813 170 K 170 (203)
Q Consensus 170 ~ 170 (203)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 46
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-33 Score=197.83 Aligned_cols=159 Identities=33% Similarity=0.614 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+++|||||+++|..+.++..+.++.+..+ ...+.+++..+.+.+|||+|++++..+...+++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6999999999999999999999998888888876554 456778888999999999999999988999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 89 DVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++.+++.+ ..|+..+....+ ..|+++|+||.|+.+ ...+..++.++++.++++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 789999977654 689999999999854 234788899999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHH
Q 028813 155 STN-VEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~-i~~~~~~l~~~~ 169 (203)
|.| ++++|..+++..
T Consensus 160 ~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 160 SEKSVRDIFHVATMAC 175 (178)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 985 999999998854
No 47
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-33 Score=199.15 Aligned_cols=179 Identities=30% Similarity=0.566 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+||++|++++...+..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998887777776655433 34454 6678999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc----cCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Q 028813 88 YDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK----VVSYETAKAFADEIGI-PFMETSAKDSTNVEQA 161 (203)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 161 (203)
+|++++.+++.+. .|+..+.... .+.|+++|+||.|+.... .+..++..+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4888776543 468999999999986532 4567788888888888 9999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCCC
Q 028813 162 FMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 202 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 202 (203)
|.++.+.+....... +.....++..|+|
T Consensus 159 f~~l~~~~~~~~~~~-------------~~~~~~~~~~c~~ 186 (187)
T cd04132 159 FDTAIEEALKKEGKA-------------IFKKKKKKRKCVV 186 (187)
T ss_pred HHHHHHHHHhhhhhh-------------hhccCCCCccccc
Confidence 999999988665533 3445556667764
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.2e-33 Score=195.11 Aligned_cols=160 Identities=50% Similarity=0.863 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++++|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777788877777778888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.++..+..|+..+......+.|+++++||.|+.+...+..++...++..++++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877776789999999999997777777888888999999999999999999999999999875
No 49
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.9e-33 Score=194.31 Aligned_cols=163 Identities=63% Similarity=1.005 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|+|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888888888888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.+++.+..|+..+......+.|+++++||+|+........+..+.++..++++++++|+.++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877766689999999999987766677778888888889999999999999999999999998
Q ss_pred HHH
Q 028813 169 IKD 171 (203)
Q Consensus 169 ~~~ 171 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3e-33 Score=194.78 Aligned_cols=160 Identities=40% Similarity=0.699 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||++++....+...+.++.+ +.....+..++..+.+.+||++|.+++...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999998887766666665 445566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+.++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998886653 347899999999999766666667777788888899999999999999999999987
Q ss_pred HH
Q 028813 168 SI 169 (203)
Q Consensus 168 ~~ 169 (203)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 51
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.2e-33 Score=202.36 Aligned_cols=165 Identities=30% Similarity=0.542 Sum_probs=145.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999998888888888888888777877777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+... ....+.+ .++...+++++++||++|.|++++|.||
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999997664 46999999999998543 3344444 6677788999999999999999999999
Q ss_pred HHHHHHHh
Q 028813 166 AASIKDRM 173 (203)
Q Consensus 166 ~~~~~~~~ 173 (203)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99887553
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.9e-33 Score=194.45 Aligned_cols=162 Identities=37% Similarity=0.655 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
++||+++|.+|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 3799999999999999999999887766666666543 346677788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+....++..++++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998886543 35789999999999977666666777788888899999999999999999999999
Q ss_pred HHHH
Q 028813 167 ASIK 170 (203)
Q Consensus 167 ~~~~ 170 (203)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=9.8e-33 Score=194.15 Aligned_cols=159 Identities=28% Similarity=0.537 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 7999999999999999999999998878888876544 345677888899999999999999988988999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
|++++++++.+. .|+..+.... .+.|+++|+||.|+.+. +.+..++.++++.+.+ +.++++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5988886654 36899999999998543 3456677788888887 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~ 169 (203)
|.|++++|+.+++..
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 54
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.4e-34 Score=186.81 Aligned_cols=170 Identities=36% Similarity=0.723 Sum_probs=158.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.+|++++|..=+|||||+-++....+...+..+..-.+..+.+.+.+...++.||||+|+++|..+-+.+|+.+|++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35789999999999999999999999998888887777777888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++|||++|+++|+.+..|..+++......+.++||+||+|+.+.+.+..++.+.++...|+.|+++||+++.||.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999888878899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028813 165 MAASIKDRMA 174 (203)
Q Consensus 165 l~~~~~~~~~ 174 (203)
|...+.+..+
T Consensus 170 Lt~~MiE~~s 179 (218)
T KOG0088|consen 170 LTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHhh
Confidence 9988876653
No 55
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.2e-32 Score=197.79 Aligned_cols=164 Identities=27% Similarity=0.560 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+|+|.+++|||||+++|....++..+.|+.+..+ ...+.+++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999888888887554 456778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++++.+. .|...+.... .+.|++||+||+|+.+. ..+..++...++.+.++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999984 5777665544 46999999999998542 13667788999999995 899999999
Q ss_pred CC-CHHHHHHHHHHHHHHHhc
Q 028813 155 ST-NVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 155 ~~-~i~~~~~~l~~~~~~~~~ 174 (203)
+. ||+++|............
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 88 599999999997765443
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.5e-32 Score=191.78 Aligned_cols=160 Identities=33% Similarity=0.640 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988877777788877777777777788899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.++..+..|+..+..... +.|+++|+||+|+.+.. .. ....++....+++++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccccc-CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999977665 79999999999986332 33 23455666778899999999999999999999988
Q ss_pred HHH
Q 028813 169 IKD 171 (203)
Q Consensus 169 ~~~ 171 (203)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 57
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-35 Score=191.57 Aligned_cols=174 Identities=43% Similarity=0.796 Sum_probs=158.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC---------CeEEEEEEEeCCCccccccch
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTIT 74 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~ 74 (203)
..++.||.+.+|.+|+|||||+.++..+.+......+.++++..+.+.++ +..+.+++|||+|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45789999999999999999999999999998989999999988877763 245788999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
..|++.+-+++++||+++..+|.+++.|+.++..+... +.-+++++||+|+.+.+.++.++..+++.++++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 99999999999999999999999999999999877664 44489999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCC
Q 028813 154 DSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
+|.++++..+.|.+.+++++++..
T Consensus 165 tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 58
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.9e-32 Score=191.86 Aligned_cols=162 Identities=41% Similarity=0.687 Sum_probs=142.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||++|++++...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888898888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
++++.++..+..|+..+... .....|+++|+||.|+.+... ...+....++.+++++++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987543 344578999999999855432 334556677788889999999999999999999999
Q ss_pred HHHHH
Q 028813 167 ASIKD 171 (203)
Q Consensus 167 ~~~~~ 171 (203)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88864
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.2e-32 Score=191.60 Aligned_cols=159 Identities=36% Similarity=0.690 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC--CeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988877777888777766667666 677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|+|++++++++.+..|+..+.... .+.|+++|+||.|+.....+..++...++..++++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999886544 3689999999999977767777888889999999999999999999999999987
Q ss_pred HH
Q 028813 167 AS 168 (203)
Q Consensus 167 ~~ 168 (203)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.6e-32 Score=195.43 Aligned_cols=161 Identities=34% Similarity=0.578 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3799999999999999999999988877777766544 345666777889999999999999888889999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...++...+ +++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888887654 368999999999986543 234556677777776 7899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASIKD 171 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~ 171 (203)
|.|++++|.+|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988863
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.5e-32 Score=190.84 Aligned_cols=160 Identities=41% Similarity=0.733 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|+++||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||...+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888788888888888888888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.+++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998866555569999999999997666677777888888888999999999999999999999875
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.4e-32 Score=191.55 Aligned_cols=162 Identities=42% Similarity=0.748 Sum_probs=142.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..+||+++|.+++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 56799999999999999999999998888777777777777778888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQ 160 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 160 (203)
+|||++++++++.+..|+..+.... ..+.|+++|+||.|+. .+....++.++++..++ ++++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998875543 2468999999999986 44566778888888887 5899999999999999
Q ss_pred HHHHHHHH
Q 028813 161 AFMAMAAS 168 (203)
Q Consensus 161 ~~~~l~~~ 168 (203)
+|+++.+.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999865
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.7e-32 Score=191.22 Aligned_cols=161 Identities=42% Similarity=0.744 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999887766666655 344566677787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....+....++..++++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988875543 346899999999999776666777788888888899999999999999999999998
Q ss_pred HHH
Q 028813 168 SIK 170 (203)
Q Consensus 168 ~~~ 170 (203)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.9e-32 Score=190.83 Aligned_cols=161 Identities=38% Similarity=0.657 Sum_probs=139.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|.+++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999888777666654 55667777888888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+...+...++...+++++++||+++.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998886653 35799999999999876555666667777777889999999999999999999998
Q ss_pred HHH
Q 028813 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 654
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.7e-32 Score=189.66 Aligned_cols=161 Identities=37% Similarity=0.602 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||++++....+.....++.+.+........++..+.+.+||++|++++...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887776666666666667777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.++..+..|+..+.... .+.|+++|+||+|+... .......++..++++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999986643 35899999999998432 1234456666778999999999999999999999998
Q ss_pred HHHHh
Q 028813 169 IKDRM 173 (203)
Q Consensus 169 ~~~~~ 173 (203)
+.+++
T Consensus 157 ~~~~~ 161 (161)
T cd04124 157 AVSYK 161 (161)
T ss_pred HHhcC
Confidence 87763
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.3e-32 Score=190.77 Aligned_cols=159 Identities=34% Similarity=0.522 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||++++++..+...+.++.+. .+...+..+...+.+.+||++|..++...+..++..+|++|+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 78999999999999999999998887776666653 33445566777789999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888765432 468999999999997656666777777888888999999999999999999999
Q ss_pred HHH
Q 028813 166 AAS 168 (203)
Q Consensus 166 ~~~ 168 (203)
.+.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 754
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3e-32 Score=191.03 Aligned_cols=162 Identities=48% Similarity=0.879 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhccCCcEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIII 86 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 86 (203)
.+||+++|++|+|||||+++++...++..+.++.+.++....+.+++..+.+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988877777888877888888888888999999999998876 567888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC---CCCHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD---STNVEQAF 162 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 162 (203)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+....++..++++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999886654 35799999999999987777778888888888889999999999 89999999
Q ss_pred HHHHHHH
Q 028813 163 MAMAASI 169 (203)
Q Consensus 163 ~~l~~~~ 169 (203)
..|.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3e-32 Score=194.91 Aligned_cols=167 Identities=23% Similarity=0.342 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhccC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYRG 80 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 80 (203)
+||+|+|.+|||||||+++|.++.+...+.++.+.+.+...+.+++..+.+.+|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888778888776666667778888899999999996543211 2234789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCCC
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDST 156 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 156 (203)
+|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+....+....++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998886654 4579999999999997666566666666654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 028813 157 NVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~ 175 (203)
|++++|+.+.+.+..+.+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999988865443
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=5e-32 Score=188.62 Aligned_cols=162 Identities=50% Similarity=0.822 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|++++|||||+++|.+..+.....++.+..+....+.+++....+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988776777777777778888888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
+|++++++++.+..|+..+........|+++++||+|+........+....+...++++++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776667999999999998766666777788888888899999999999999999999988
Q ss_pred HH
Q 028813 168 SI 169 (203)
Q Consensus 168 ~~ 169 (203)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.9e-32 Score=190.91 Aligned_cols=158 Identities=32% Similarity=0.602 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+.++..+.+...+.++.. ......+..++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999888877777765 444556677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (203)
|+++++++..+. .|+..+.... .+.|+++|+||.|+.+. ..+..++..+++.+++ +++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 5888876654 46999999999998542 2467788888998888 4999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAAS 168 (203)
Q Consensus 155 ~~~i~~~~~~l~~~ 168 (203)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=7e-32 Score=187.51 Aligned_cols=159 Identities=38% Similarity=0.683 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..++..+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 799999999999999999999988777776666533 3556677777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..........++...+++++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988886654 34789999999999865 345566777788888999999999999999999999986
Q ss_pred HH
Q 028813 168 SI 169 (203)
Q Consensus 168 ~~ 169 (203)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 72
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=176.17 Aligned_cols=174 Identities=47% Similarity=0.868 Sum_probs=164.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+..+.+|.+++|.-|+|||.|+..|....+...-+.+.+.++....+.+.++.+++.+||++|+++|+...+.+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
.+.|+|++.+.++..+..|+...+.+..++.-+++++||.|+...+.+..++.++|+.+++..++++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 028813 164 AMAASIKDRMASQP 177 (203)
Q Consensus 164 ~l~~~~~~~~~~~~ 177 (203)
.-.++++++.+.-+
T Consensus 167 e~akkiyqniqdgs 180 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGS 180 (215)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999998877533
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=9.6e-32 Score=187.34 Aligned_cols=161 Identities=39% Similarity=0.633 Sum_probs=138.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||+.++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc-eEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 479999999999999999999988776666666553 3345566788788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
+|++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..+...+++..++++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998886543 34789999999999977666666777888888889999999999999999999998
Q ss_pred HHH
Q 028813 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.2e-31 Score=186.42 Aligned_cols=161 Identities=42% Similarity=0.767 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+.....++.+.......+...+..+.+.+||++|+..+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877666666666666677777777789999999999988888998999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++++++.+..|+..+......+.|+++++||+|+.....+..+...+++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877766679999999999998666667777888888889999999999999999999999876
Q ss_pred H
Q 028813 169 I 169 (203)
Q Consensus 169 ~ 169 (203)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 75
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-31 Score=186.65 Aligned_cols=168 Identities=52% Similarity=0.905 Sum_probs=146.2
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|. +..+.++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..
T Consensus 1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred CC-CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC
Confidence 55 23567999999999999999999999887776677777777777788888888899999999999888888889999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.+......+++++|+++|.|+++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 99999999999999999999999988777666799999999999976666666666777777778999999999999999
Q ss_pred HHHHHHHHH
Q 028813 161 AFMAMAASI 169 (203)
Q Consensus 161 ~~~~l~~~~ 169 (203)
+|++|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.8e-31 Score=190.69 Aligned_cols=156 Identities=29% Similarity=0.592 Sum_probs=138.3
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh
Q 028813 14 IGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ 93 (203)
Q Consensus 14 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (203)
+|.++||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888777888888888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 94 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 94 ~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.++..+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.||.++|.+|.+.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999997765 4699999999999854 3344443 367777889999999999999999999999988765
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2e-31 Score=185.80 Aligned_cols=160 Identities=33% Similarity=0.612 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+||+++|.+|||||||+++|... .++..+.++.+.++....+... +..+.+.+||++|...+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 5677778888777766666664 56789999999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.+++.+..|+..+.... .+.|+++|+||.|+.+...+.....+.+...++++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887654 458999999999997766666666667777788999999999999999999999
Q ss_pred HHHH
Q 028813 166 AASI 169 (203)
Q Consensus 166 ~~~~ 169 (203)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3e-31 Score=186.20 Aligned_cols=165 Identities=42% Similarity=0.743 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777777777777777888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 163 (203)
|++++.+++.+..|...+..... .+.|+++|+||+|+..+.....+..+.++...+ ++++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877644332 368999999999997655566777778887777 7999999999999999999
Q ss_pred HHHHHHHHHh
Q 028813 164 AMAASIKDRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
++.+.+.++.
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887663
No 79
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=4.8e-31 Score=182.42 Aligned_cols=158 Identities=62% Similarity=1.019 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|+++||||||++++.+......+.++.+.+.....+..++....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888899999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|++++++++.+..|+..+......+.|+++++||+|+........++.+.++..++++++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998777656799999999999975566677888888888899999999999999999999986
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=8.3e-31 Score=182.13 Aligned_cols=159 Identities=55% Similarity=0.932 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||...+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998877667777777777777777877889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++++.+++.+..|++.+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887664 45789999999999863 345567778888888999999999999999999999887
Q ss_pred H
Q 028813 168 S 168 (203)
Q Consensus 168 ~ 168 (203)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.1e-31 Score=194.55 Aligned_cols=161 Identities=25% Similarity=0.436 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.|||++|.+.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888777777765 566677788888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCH
Q 028813 89 DVTDQESFNNVKQWLNEIDRY---------ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNV 158 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 158 (203)
|++++++++.+..|+..+... ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888543 224689999999999976566777777777654 3688999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIK 170 (203)
Q Consensus 159 ~~~~~~l~~~~~ 170 (203)
+++|++|...+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.7e-31 Score=185.64 Aligned_cols=158 Identities=35% Similarity=0.644 Sum_probs=135.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
|+|+|.+|+|||||+++|.++.+...+.++... .....+..++..+.+.+||++|++.+...+..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999887777666553 3445667788888999999999999988899999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 91 TDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 91 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..++...++..+++ +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888886654 369999999999986532 2566777888888886 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASIK 170 (203)
Q Consensus 157 ~i~~~~~~l~~~~~ 170 (203)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 83
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=8.3e-31 Score=190.60 Aligned_cols=165 Identities=30% Similarity=0.436 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc-CCcEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIII 86 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (203)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|.+.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999877765 455555544667777888888899999999998722 2344556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|||++++.+++.+.+|+..+.... ..+.|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999886654 2478999999999997777777777788888889999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028813 166 AASIKDRMAS 175 (203)
Q Consensus 166 ~~~~~~~~~~ 175 (203)
.+.+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9998755444
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=9.9e-31 Score=183.03 Aligned_cols=161 Identities=39% Similarity=0.659 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+++|.++.+...+.++.+. .....+..++..+.+.+||+||+.++..++..+++.++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 78999999999999999999988876666666653 34566777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|++++.+++.+..|...+.... ..+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|.++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998886543 3579999999999997766667777777888887 8999999999999999999998
Q ss_pred HHHH
Q 028813 167 ASIK 170 (203)
Q Consensus 167 ~~~~ 170 (203)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4e-31 Score=184.49 Aligned_cols=160 Identities=34% Similarity=0.552 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCCcEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 88 (203)
||+++|++|+|||||+++++...+...+.++... .....+.+++..+.+.+||+||... .......+++.+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 5899999999999999999987776666665542 3355667788888999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC-CCHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAM 165 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l 165 (203)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++|++++ .|++++|.+|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887654 347999999999998766667777888888888999999999999 5999999999
Q ss_pred HHHHH
Q 028813 166 AASIK 170 (203)
Q Consensus 166 ~~~~~ 170 (203)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88664
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.8e-31 Score=183.87 Aligned_cols=163 Identities=23% Similarity=0.336 Sum_probs=138.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+.+||+++|.+|+|||||+++|++..+. ..+.++.+..+....+.+++..+.+.+||++|.+.+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999887 77888887777777788888888999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 163 (203)
++|+|++++.+++.+..|+..+.. ..+.|+++|+||.|+.+..........+++..+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 999999999999988888876632 23689999999999865443333445667777777 479999999999999999
Q ss_pred HHHHHHH
Q 028813 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998764
No 87
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=8.2e-31 Score=186.84 Aligned_cols=158 Identities=28% Similarity=0.480 Sum_probs=127.6
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCcccccee-eeEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 028813 8 LFKLLLIGDSGVGKSCLLL-RFADDS-----YIESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
.+||+++|.+++|||||+. ++.+.. +...+.||.+. +.+... ..+++..+.+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 555433 34455666542 222222 256788899999999998752
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CccCC
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVS 132 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~ 132 (203)
....+++++|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 3556789999999999999999999997 59998876553 689999999999864 35678
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 133 YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
.++.++++++++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999998864
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.2e-30 Score=180.54 Aligned_cols=153 Identities=24% Similarity=0.410 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||++++..+.+...+.++ .. .+...+.+++..+.+.+||++|.+. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~-~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GG-RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-cc-ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776655443 22 3346778888888999999999864 24568899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|++++.+++.+..|+..+..... .+.|+++|+||.|+. ..+.+..++.+++++.. ++.+++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999876643 568999999999985 34567777788888776 489999999999999999999
Q ss_pred HHHH
Q 028813 165 MAAS 168 (203)
Q Consensus 165 l~~~ 168 (203)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.1e-30 Score=181.47 Aligned_cols=159 Identities=35% Similarity=0.614 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888766666554 344456777888888999999999999888999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|+.++.+++.+. .|+..+... ..+.|+++|+||+|+.+. ..+..++...++..+++ ++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 588877655 457999999999998543 24556777888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~ 169 (203)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=3.9e-30 Score=180.81 Aligned_cols=157 Identities=32% Similarity=0.579 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+|++++|++|+|||||++++.++.+...+.++. .+.....+..++..+.+.+||++|+.++...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877776665 3455567778888899999999999999998999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++.+++.+. .|+..+.... .+.|+++++||.|+.. .+.+..++...++..+++ .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6888776543 3689999999999853 235667778888888887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAA 167 (203)
Q Consensus 155 ~~~i~~~~~~l~~ 167 (203)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 91
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4e-30 Score=184.40 Aligned_cols=167 Identities=29% Similarity=0.456 Sum_probs=136.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999887766666553 4555677788878899999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CccCCHHHHHHHHH-HhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA-NKVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... ..+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888766544 4799999999999865 34444444444433 4467899999999999999999999
Q ss_pred HHHHHHhccCC
Q 028813 167 ASIKDRMASQP 177 (203)
Q Consensus 167 ~~~~~~~~~~~ 177 (203)
+.+.......+
T Consensus 160 ~~~~~~~~~~~ 170 (198)
T cd04147 160 RQANLPYNLSP 170 (198)
T ss_pred HHhhcccccch
Confidence 98764444343
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=7.5e-30 Score=177.70 Aligned_cols=161 Identities=42% Similarity=0.708 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+++++...+...+.++.. +........++..+.+.+||+||+.++...+..+++.+|++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998887766666554 344556667878889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|+.++.++..+..|+..+.... ..+.|+++|+||+|+.............+...++++++++|++++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988886653 347999999999999764555667777788888899999999999999999999998
Q ss_pred HHH
Q 028813 168 SIK 170 (203)
Q Consensus 168 ~~~ 170 (203)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 775
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=8.3e-30 Score=181.23 Aligned_cols=167 Identities=35% Similarity=0.584 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+|+|++|+|||||+++|..+.+...+.++.... ....+..++..+.+.+||++|+..+......++..+|++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999999777766666555433 3445667777788999999999888776767789999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------NKVVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
|+++++++..+. .|+..+..... ..|+++|+||+|+.+ .+.+..+....++...++ ++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 58988876554 599999999999854 233455677788888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCC
Q 028813 157 NVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~~~ 177 (203)
|++++|+++.+.+...++..|
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~ 180 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEP 180 (187)
T ss_pred CHHHHHHHHHHHHhcccCccc
Confidence 999999999988876655443
No 94
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7e-32 Score=172.73 Aligned_cols=189 Identities=42% Similarity=0.845 Sum_probs=161.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813 12 LLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90 (203)
Q Consensus 12 ~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
+++|.+++|||.|+-++..+.+. .....+.++++..+.++.++..+++++|||+|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999888766553 45578889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 91 TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 91 ~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
.+..+|+..+.|+.++..+....+.+.+++||+|+..++.+..++.+.++..+++|++++|+++|-+++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888899999999999888888889999999999999999999999999999999998887
Q ss_pred HHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813 171 DRMASQPSMNNARPPTVQIKGQPVAQKSGCC 201 (203)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 201 (203)
...-..+. ......++.+....+..-..||
T Consensus 161 k~~~~~~~-~~~~~~~~~v~~~~k~eia~cc 190 (192)
T KOG0083|consen 161 KLKMGAPP-EGEFADHDSVADEGKGEIARCC 190 (192)
T ss_pred HhccCCCC-CCccccchhHHhcCCCcccccc
Confidence 65433322 1223444445544444456666
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=8.9e-30 Score=176.58 Aligned_cols=158 Identities=42% Similarity=0.719 Sum_probs=138.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|++|||||||++++++..+.....++.. +.....+..++..+.+.+||+||...+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877666666655 5556667777777899999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+++++++..+..|...+..... .+.|+++++||+|+........+....++..++++++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888866655 579999999999998766677788888888888999999999999999999999875
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.4e-29 Score=177.11 Aligned_cols=165 Identities=36% Similarity=0.598 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|.+|+|||||+++|.+..+...+.++..... ...+..++..+.+.+||+||..++...+..++..+|++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998887666666654333 455667777788999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|+++..+++.+..|+..+... ...+.|+++++||+|+...+....+....++..++++++++|++++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999888777543 3356899999999999766666666677778888899999999999999999999999
Q ss_pred HHHHHhc
Q 028813 168 SIKDRMA 174 (203)
Q Consensus 168 ~~~~~~~ 174 (203)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8876543
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.9e-29 Score=178.21 Aligned_cols=160 Identities=21% Similarity=0.361 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..+||+++|.++||||||++++....+. .+.++.+.+. ..+..++ +.+.+||+||++++..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999876664 3556666443 3344444 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-----CcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 159 (203)
+|+|+++++++..+..++..+.. ....+.|++|++||.|+.+.. ..+++........ +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999888776665522 222468999999999986542 3344333322111 246689999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=3.2e-29 Score=177.60 Aligned_cols=166 Identities=23% Similarity=0.392 Sum_probs=129.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|.+++...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998776543 455555555544443 3356899999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------hCCcEEEeecCCCCCHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~ 159 (203)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...+....+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999999998888888776543 2346899999999998542 333444443321 12468999999999999
Q ss_pred HHHHHHHHHHHHHhccC
Q 028813 160 QAFMAMAASIKDRMASQ 176 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~ 176 (203)
+++++|.+.+.+.++..
T Consensus 160 ~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 160 EGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999997666543
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.8e-29 Score=176.53 Aligned_cols=154 Identities=21% Similarity=0.395 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|.++||||||+++|....+. .+.++.+.+.. .+... .+.+.+||++|++++...+..++..+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999876654 34556655443 33333 4889999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 160 (203)
|+|++++.++..+..|+..+.. ....+.|++||+||+|+.+. ...+++..+... ..+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999888877765532 22346899999999998643 344555554321 234789999999999999
Q ss_pred HHHHHHH
Q 028813 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.2e-29 Score=174.88 Aligned_cols=156 Identities=20% Similarity=0.387 Sum_probs=124.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.++||||||+++|.+..+. .+.+|.+.... .+... .+.+.+||+||+.++...+..++..+|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 35556554443 34444 4889999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC------CcEEEeecCCCCCHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG------IPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 162 (203)
++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...+++++++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999998888877433 2245899999999998542 45565666553222 368899999999999999
Q ss_pred HHHHHHHHHH
Q 028813 163 MAMAASIKDR 172 (203)
Q Consensus 163 ~~l~~~~~~~ 172 (203)
+||.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998877654
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2.9e-30 Score=179.87 Aligned_cols=153 Identities=22% Similarity=0.355 Sum_probs=123.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
.|+++|.+|||||||+++|.+..+...+.++.+... ..+ +...+.+.+||++|+.++...+..+++++|++|+|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEE--eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999998877777777766442 233 3345899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH----HHHHHHHHHhCCcEEEeecCC------CCCHH
Q 028813 90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ETAKAFADEIGIPFMETSAKD------STNVE 159 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 159 (203)
++++.++..+..|+..+.... .+.|+++|+||.|+........ .....++.+.++.++++||++ ++||+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999998888888775433 5799999999999866543221 123445556678899999888 99999
Q ss_pred HHHHHHHH
Q 028813 160 QAFMAMAA 167 (203)
Q Consensus 160 ~~~~~l~~ 167 (203)
++|+.+++
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99999875
No 102
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.6e-28 Score=172.88 Aligned_cols=159 Identities=33% Similarity=0.661 Sum_probs=131.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.++|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999888777777665443 346677888889999999999998888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
|++++++++.+. .|+..+.... .+.|+++|+||.|+.+.. .+.....++++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 4887776543 368999999999985432 2345566777777764 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~ 169 (203)
|.|++++|.+|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 103
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.9e-29 Score=175.62 Aligned_cols=161 Identities=24% Similarity=0.396 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|+++||||||++++..+.+.. ..++.+.++. .+...+ +.+.+||++|++++...+..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998766643 4556654443 344443 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEID-RYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..++..+. .....+.|++||+||.|+.+.. ..+++..... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 9999999999988877666552 2222468999999999985432 2232222211 112356799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028813 160 QAFMAMAASIKDRM 173 (203)
Q Consensus 160 ~~~~~l~~~~~~~~ 173 (203)
++|+||.+.+.+.+
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887765
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.8e-29 Score=177.68 Aligned_cols=157 Identities=20% Similarity=0.369 Sum_probs=120.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..+||+++|.++||||||+++|..+.+. .+.++.+.++. .+... .+.+.+||++|+.++...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 35699999999999999999999866653 35566665443 33344 388999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.+++...+|+..+.. ....+.|++||+||.|+.+.. ..+++...... ..+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 99999999999988887776632 222468999999999986432 22333322211 12357789999999999
Q ss_pred HHHHHHHHHH
Q 028813 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.4e-29 Score=175.51 Aligned_cols=152 Identities=22% Similarity=0.401 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.++||||||++++..+.+. .+.++.+.... .+... .+.+.+||++|++++...+..+++++|++|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877665 45666665443 34443 488999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHH----HhCCcEEEeecCCCCCHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEID-RYASDNVNKLLVGNKCDLTANKVVSYETA-KAFAD----EIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
|++++.++..+..|+..+. .....+.|+++++||.|+.+.. ..+++ ..+.. ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999998888776653 2222458999999999985432 22222 22211 123467899999999999999
Q ss_pred HHHHH
Q 028813 163 MAMAA 167 (203)
Q Consensus 163 ~~l~~ 167 (203)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.4e-28 Score=171.28 Aligned_cols=157 Identities=36% Similarity=0.652 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||+..+.......++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999887666665554 444556677788889999999999988877888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------CCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV-----------VSYETAKAFADEIGI-PFMETSAKDS 155 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (203)
|++++.++.... .|+..+..... +.|+++|+||+|+.+... +..+....+...+++ +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999998887765 47777765443 799999999999865542 345667777778887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~~i~~~~~~l~~ 167 (203)
.|+.++|++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.2e-28 Score=173.21 Aligned_cols=156 Identities=24% Similarity=0.400 Sum_probs=122.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..++|+++|++|||||||+++|.+... ....++.+ +....+.+++ +.+.+||+||+..+...+..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35678999999999999999999998754 33445544 3334455554 7899999999998888889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNV 158 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 158 (203)
++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 999999999999888888776633 223578999999999986533 3444544442 23578999999999999
Q ss_pred HHHHHHHHH
Q 028813 159 EQAFMAMAA 167 (203)
Q Consensus 159 ~~~~~~l~~ 167 (203)
+++|++|.+
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=172.96 Aligned_cols=167 Identities=39% Similarity=0.619 Sum_probs=153.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|.+|+|||+|..+|....+...+.|+.+ +.+.+.+.+++..+.+.|+||+|...+..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 458999999999999999999999999999999887 7788888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
||+++++.||+.+..+++.|... .....|+++|+||+|+...+.+..++.+.++..++++++++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999988443 33567999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 028813 166 AASIKDRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+...+.
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 999887444
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.1e-28 Score=170.09 Aligned_cols=159 Identities=26% Similarity=0.386 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|||||||+++|.++.++..+..+. ........+.+..+++.+||++|...+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988765533322 122344455667789999999999887777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHH
Q 028813 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 163 (203)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... ..+....+...+. .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 58888866544 7999999999999664432 1233333444333 3899999999999999999
Q ss_pred HHHHHHH
Q 028813 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988764
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.7e-27 Score=172.93 Aligned_cols=166 Identities=32% Similarity=0.576 Sum_probs=142.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999888888877888888888888888788888999999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+++|+|+++..++..+..|+..+.... .+.|+++++||.|+.+. ....+ ...++...++.++++|+++|.|++++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887654 46899999999998543 23333 3456677789999999999999999999
Q ss_pred HHHHHHHHH
Q 028813 164 AMAASIKDR 172 (203)
Q Consensus 164 ~l~~~~~~~ 172 (203)
+|.+.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999888753
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.5e-27 Score=170.43 Aligned_cols=148 Identities=24% Similarity=0.431 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-----CeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+||+++|.+++|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhh-------------------cCCCCcEEEEEeCCCCCCCccCCHH----HHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRY-------------------ASDNVNKLLVGNKCDLTANKVVSYE----TAKAFA 140 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~p~ilv~nK~D~~~~~~~~~~----~~~~~~ 140 (203)
+|+|||++++.+++.+..|+.++... ...+.|++||+||.|+.+.+..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998553 1246899999999999765444333 245677
Q ss_pred HHhCCcEEEeecCCCC
Q 028813 141 DEIGIPFMETSAKDST 156 (203)
Q Consensus 141 ~~~~~~~~~~Sa~~~~ 156 (203)
...+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8889999998888654
No 112
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.9e-27 Score=167.10 Aligned_cols=157 Identities=32% Similarity=0.501 Sum_probs=125.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|+.+|||||+++++...... ...||.+ +....+.+.+ +.+.+||.+|+..++..|+.++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 67899999999999999999999976543 3555655 4455666666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------hCCcEEEeecCCCCCH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKDSTNV 158 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 158 (203)
||+|.++.+.+.+..+.+..+-. ....+.|+++++||.|+.+. ...+++...... ..+.++.||+.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999999888888776666532 23347999999999998653 344555544322 2356999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
.+.++||.+++
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3e-28 Score=169.38 Aligned_cols=152 Identities=20% Similarity=0.349 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+|+++|.++||||||+++|.+... ...+.++.+... ..+... .+.+.+||+||+.++...+..++..+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445556665433 233333 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 160 (203)
|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...++..... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999988888887766432 23479999999999986532 2222222211 1134689999999999999
Q ss_pred HHHHHHH
Q 028813 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.9e-28 Score=170.27 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|.++||||||+++|.+. +...+.++.+.. ...+..++ +.+.+||+||+..+...+..+++++|++|+|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555566666643 34455544 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCC-HH---HHHHHHHHh--CCcEEEeecCCC------C
Q 028813 90 VTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVS-YE---TAKAFADEI--GIPFMETSAKDS------T 156 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~-~~---~~~~~~~~~--~~~~~~~Sa~~~------~ 156 (203)
++++.+++.+..|+..+.... ..+.|+++|+||.|+.+..... .. ....++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888775432 2478999999999986543211 01 112222222 357888999998 8
Q ss_pred CHHHHHHHHHH
Q 028813 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 ~i~~~~~~l~~ 167 (203)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 115
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=5.7e-27 Score=164.51 Aligned_cols=144 Identities=40% Similarity=0.639 Sum_probs=127.5
Q ss_pred CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q 028813 32 SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS 111 (203)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 111 (203)
.+...+.+|.+.++....+.+++..+.+.||||+|++++...+..+++.+|++|+|||++++.+++.+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45667788888888888888999999999999999999999999999999999999999999999999999998866555
Q ss_pred CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 112 DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 112 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
...|++||+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|.+.+.+....
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 5789999999999976666777788888888899999999999999999999999998765443
No 116
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=3.7e-27 Score=156.09 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=130.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+++++|+++|..||||||++++|.+... ....|+.+ +..++..+++ +++.+||.+|+..+++.|++|+...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 46799999999999999999999998773 34445555 5566666666 8999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCc---cCC-HHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANK---VVS-YETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
|||+|.+|+..+++....+..+ ....--+.|+++++||.|+...- .+. .-.+++++....++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999998887776655544 22233468999999999986321 111 122345556678999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
+.++||.+.++++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=3.6e-27 Score=165.85 Aligned_cols=154 Identities=21% Similarity=0.351 Sum_probs=118.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|++++|||||++++..+.+.. ..++.+.+. ..+..++ ..+.+||+||..++...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877654 345554333 3444444 789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHH-HH----HHhCCcEEEeecCCCCCHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA-FA----DEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~ 160 (203)
|+|+++++++.....++..+... ...+.|+++++||+|+.+. ...+++.+ +. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999998888777766655322 2246899999999998542 23333322 21 12346799999999999999
Q ss_pred HHHHHHH
Q 028813 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
+|+||.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3.2e-27 Score=168.46 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=122.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+..+|+++|++|||||||++++.+..+. .+.++.+. ....+.+++ ..+.+||+||+.++...+..++..+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987653 34444443 334555555 78899999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH----------------hCCcEE
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE----------------IGIPFM 148 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 148 (203)
+|+|+++..++.....|+..+.... ..+.|+++++||+|+.+ .+..++++..... ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999988888777777664332 34689999999999854 3445566555532 124689
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+|||++|.|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999865
No 119
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=166.33 Aligned_cols=166 Identities=33% Similarity=0.603 Sum_probs=147.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
...+|+.|||..++|||+|+-.+..+.++..+.|+.. +.+...+.++ ++.+.+.+|||+|+++|..++..-+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999987 6777778885 9999999999999999999888889999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEe
Q 028813 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 150 (203)
+++|++.++.+++++ .+|+.++..+.+ +.|++||++|.|+.++ ..+..++...++.+.| ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 559999988885 6999999999999743 2467788899999999 589999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
||+++.|++++|+..+.......
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999988877543
No 120
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=4e-29 Score=167.82 Aligned_cols=170 Identities=30% Similarity=0.582 Sum_probs=158.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..+|++|+|..++||||+|++++.+-+...+..+.+.++....+.+.+.++++.+||++|+++|..+.+.+++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 36889999999999999999999999988888888999888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++||+-+|+.+|+...+|++.+..... .+|.++|-||+|+.++..+...+.+.+++...+.++.+|++...|+..+|.+
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999966555 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028813 165 MAASIKDRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
|.+++.+++.+
T Consensus 176 LaeK~~q~~kq 186 (246)
T KOG4252|consen 176 LAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999888776
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.4e-27 Score=164.53 Aligned_cols=152 Identities=26% Similarity=0.439 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|++|||||||+++|.+..+.. ..++.+.+. ..+... ..+.+.+||++|...+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887653 345554333 333333 34789999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHH------HHHhCCcEEEeecCCCCCHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF------ADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
++++.++..+..|+..+... ...+.|+++|+||+|+.... ..+++... ....+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99998888888877766332 22478999999999985421 22222221 11234579999999999999999
Q ss_pred HHHHH
Q 028813 163 MAMAA 167 (203)
Q Consensus 163 ~~l~~ 167 (203)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=5.3e-27 Score=163.93 Aligned_cols=152 Identities=29% Similarity=0.441 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+|+++|++|+|||||+++|.+... ...+.++.+... ..+.+++ ..+.+||+||+..+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 122334443333 3455554 789999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-------hCCcEEEeecCCC
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGIPFMETSAKDS 155 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (203)
+++|+|+++++++.....|+..+... ...+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 99999999988888887777766432 2347899999999998553 333444444322 2468999999999
Q ss_pred CCHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~~i~~~~~~l~~ 167 (203)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.2e-27 Score=163.03 Aligned_cols=151 Identities=25% Similarity=0.414 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+|||||||++++.+... ....++.+.. ...+.+.+ ..+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 3444454433 34444544 789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+++++++.....|+..+... ...+.|+++++||+|+.... ..++..+... ...++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999998888877766442 33578999999999986543 2233333322 2346899999999999999999
Q ss_pred HHHH
Q 028813 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.8e-26 Score=159.88 Aligned_cols=151 Identities=25% Similarity=0.394 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
||+++|.+++|||||+++|....... ..++.+.+. ..+... ...+.+||+||..++...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998766543 344444333 234443 3789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHHH
Q 028813 90 VTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
++++.++.....++..+ ......+.|+++|+||+|+.+.. ...++..... ..+++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988877666655433 33333468999999999986432 2222222111 1124699999999999999999
Q ss_pred HHHH
Q 028813 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 125
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=3.4e-26 Score=174.58 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG 80 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (203)
...|+|+|.||||||||+++|++........+.++.......+.+.+ ..++.+||+||... ....+...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 34699999999999999999998654434444555556666665532 25789999999632 11122334567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
++++++|+|+++.++++.+..|..++..+.. .++|+++|+||+|+.+......+..+.+....+++++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988788888899998876643 36899999999998765444334445555566789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIKDR 172 (203)
Q Consensus 159 ~~~~~~l~~~~~~~ 172 (203)
++++++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=2.6e-26 Score=160.58 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------chhhhccC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSSYYRG 80 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~ 80 (203)
+|+++|.+|+|||||+++|.+........+..+.+.....+..+ .+.+.+|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999877643333333333444344343 37899999999742110 01111233
Q ss_pred CcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 81 AHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+...... ..++....+++++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCH
Confidence 689999999998654 355566777775543 3689999999999965443322 44555555689999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
+++|++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.8e-26 Score=162.65 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=119.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|||||||+++|.+..+. .+.++.+. ....+..++ +++.+||+||...+...+..++..+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999987653 23344332 233444444 78999999999988888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------------hCCcEEEeec
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA 152 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 152 (203)
+|+|+++++++.....++..+.. ....+.|+++|+||.|+.. .+..+++.+.... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 99999999988888777766532 2224689999999999853 2344545443311 1245999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAAS 168 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~ 168 (203)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.9e-25 Score=167.01 Aligned_cols=140 Identities=25% Similarity=0.516 Sum_probs=120.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-------------eEEEEEEEeCCCcccccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-------------KTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~~ 72 (203)
...+||+++|..+||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++++..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4679999999999999999999999888778888888877777666542 468899999999999999
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---CCHH
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------DNVNKLLVGNKCDLTANK---V---VSYE 134 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~D~~~~~---~---~~~~ 134 (203)
++..+++++|++|+|||++++.+++.+..|+..+..... ..+|++||+||+|+...+ . ...+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999976531 248999999999996542 1 3578
Q ss_pred HHHHHHHHhCC
Q 028813 135 TAKAFADEIGI 145 (203)
Q Consensus 135 ~~~~~~~~~~~ 145 (203)
+.++++.++++
T Consensus 179 ~a~~~A~~~g~ 189 (334)
T PLN00023 179 AARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHcCC
Confidence 89999998874
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=2.9e-26 Score=160.60 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhh---ccCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGAH 82 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 82 (203)
+|+++|.+|||||||+++|.+........+..+.+.....+..++. ..+.+|||||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976542222222233333333444442 3789999999632 12223333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCH
Q 028813 83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNV 158 (203)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 158 (203)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888889888866542 36899999999998654433 3334445555 3688999999999999
Q ss_pred HHHHHHHHHH
Q 028813 159 EQAFMAMAAS 168 (203)
Q Consensus 159 ~~~~~~l~~~ 168 (203)
+++|++|.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.3e-25 Score=158.63 Aligned_cols=154 Identities=24% Similarity=0.331 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------cceeeeEEEEE--Ee---CCeEEEEEEEeCCCccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIRTV--EQ---DGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+++|||||+++|++.. ....+.+ ..+.+...... .+ ++..+.+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 1111111 11223332222 22 5567889999999999998
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---cEE
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---PFM 148 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 148 (203)
..+..++..+|++|+|+|++++.+......|.... ..++|+++|+||+|+.+.. ......+++..+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88999999999999999999876655555554322 2368999999999985432 12233455566665 489
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.6e-25 Score=154.82 Aligned_cols=151 Identities=25% Similarity=0.451 Sum_probs=118.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
|+++|++|||||||+++|.+..+...+.++.+.... .+..++ +.+.+||+||...+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 799999999999999999999887777777765544 344444 7899999999999988899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHHHHHHH
Q 028813 91 TDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 91 ~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+++.++.....|+..+.. ....+.|+++|+||+|+.+... ........ ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 999888887777666532 2224689999999999865432 12221111 112367899999999999999999
Q ss_pred HHH
Q 028813 165 MAA 167 (203)
Q Consensus 165 l~~ 167 (203)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 132
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.94 E-value=2.4e-26 Score=156.08 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--cC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RG 80 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 80 (203)
|+|+++|.||+|||||+|+|++........|+.+.+.....+...+ ..+.++|+||..+... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987777778888888888888887 6888999999543322 223333 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
.|++|+|+|++..+.-..+ ..++. ..++|+++++||+|......+.. ....+.+..++|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~---e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLL---ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHH---HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHH---HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875432222 22332 23799999999999865444332 25667778899999999999999999
Q ss_pred HHHHH
Q 028813 161 AFMAM 165 (203)
Q Consensus 161 ~~~~l 165 (203)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99865
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=9.7e-26 Score=162.53 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=114.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 76 (203)
+..++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+||+||.... ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 45689999999999999999999987643333333333444444555442 37899999997321 1111 1
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+..... ......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998887777777777766555578999999999986543221 3344556789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASI 169 (203)
Q Consensus 157 ~i~~~~~~l~~~~ 169 (203)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999997653
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=7.4e-25 Score=151.18 Aligned_cols=157 Identities=34% Similarity=0.533 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||++++.+...+..+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.+++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999998877777777777777766777776688999999999888888888888999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 89 DVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 89 d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 98766 5555554 66666655554478999999999996544 233333334444457899999999999999999874
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=9.2e-25 Score=153.46 Aligned_cols=153 Identities=25% Similarity=0.392 Sum_probs=115.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+++|++|||||||++++.+.... ...++.+. ....+...+ ..+.+||++|...+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 356799999999999999999999987653 23444443 334445555 6889999999988888888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--------CcEEEeecCCC
Q 028813 85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKDS 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 155 (203)
++|+|+.+..++.....++..+ ......++|+++++||+|+.+... .+.+ ....+ .+++++||++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence 9999999988887776666554 333334689999999999855321 2222 22223 24789999999
Q ss_pred CCHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~~i~~~~~~l~~ 167 (203)
.|++++|+||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999965
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=4.7e-25 Score=153.48 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++++......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2222333444444444455542 368999999999888766667788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHH---hCCcEEEeecCCCCCHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADE---IGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~ 160 (203)
+|+|+++... ......+..+... ...|+++++||+|+.+... ...+...+.... .+.+++++|++++.|+++
T Consensus 80 ~V~d~~~~~~-~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 80 LVVAADEGIM-PQTREHLEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEEECCCCcc-HhHHHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 9999987321 1111222222221 1248999999999865421 112233333333 357999999999999999
Q ss_pred HHHHHHH
Q 028813 161 AFMAMAA 167 (203)
Q Consensus 161 ~~~~l~~ 167 (203)
++++|.+
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998754
No 137
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=1.3e-24 Score=150.43 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=111.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--cCCcEE
Q 028813 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGI 84 (203)
Q Consensus 13 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~ 84 (203)
|+|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||...+.. .+..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765555556666666666677766 5789999999876653 244455 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++|+|+.++.... .+...+.. .++|+++|+||+|+.+...... ....+...++++++++|++++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 33333332 3689999999999976544333 345667777899999999999999999999
Q ss_pred HHHHH
Q 028813 165 MAASI 169 (203)
Q Consensus 165 l~~~~ 169 (203)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98763
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-25 Score=149.96 Aligned_cols=160 Identities=24% Similarity=0.426 Sum_probs=129.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
....+|+++|..+|||||++.+|..++.... .||.+ +....+.+.+ +++++||.+|+.+++..|+.++++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4679999999999999999999988776544 66666 5556666665 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 159 (203)
||+|.+|++.+.++++.+..+-.+.. .+.|+++++||.|++.. ++..++.+.... ..+.+-.|+|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999998887776644433 57999999999998654 333334333322 23578899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
+.++||.+.+...
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988653
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=2.8e-24 Score=164.03 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=117.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc----ccch---hhhccC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTIT---SSYYRG 80 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~ 80 (203)
...|+|+|.||||||||+++|..........+.++.......+.+++ ..++.+||+||.... ..+. ...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 45699999999999999999998654333333444455555555543 367899999996421 1222 223457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813 81 AHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS 155 (203)
Q Consensus 81 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
++++++|+|+++. ++++.+..|.+++..+.. ..+|+++|+||+|+.+... ..+..+.+...++.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677788888887765532 3689999999999865432 233445566666789999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAASI 169 (203)
Q Consensus 156 ~~i~~~~~~l~~~~ 169 (203)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=7.7e-24 Score=144.94 Aligned_cols=153 Identities=55% Similarity=0.903 Sum_probs=121.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC
Q 028813 13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 13 v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444444 6667777777667789999999998888777788889999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH-HHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 92 DQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKVVSYET-AKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 92 ~~~s~~~~~~~~-~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
++.+...+..|. .........+.|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888772 23334455679999999999986654333222 3344455678999999999999999999985
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=9e-25 Score=148.72 Aligned_cols=134 Identities=25% Similarity=0.297 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-----ccccchhhhccCCcEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI 84 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 84 (203)
||+++|.+|+|||||+++|.+... .+.++.+ +.+.. .+||+||.. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--cccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 799999999999999999998764 2222222 11221 689999972 233332 347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 163 (203)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.+. ....+..++++...+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887644 2343322 2499999999998643 3345666777777775 899999999999999999
Q ss_pred HHH
Q 028813 164 AMA 166 (203)
Q Consensus 164 ~l~ 166 (203)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=3.6e-25 Score=159.17 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=104.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC-----------ccccccchh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITS 75 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~ 75 (203)
..++|+++|.+|+|||||+++|.+..+.....++.+ .....+... .+.+||||| .+.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 678999999999999999999998776555555443 333333332 588999999 344555444
Q ss_pred hhcc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH
Q 028813 76 SYYR----GAHGIIIVYDVTDQESF-N---------NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD 141 (203)
Q Consensus 76 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 141 (203)
.++. .++++++|+|..+.... + .-......+. ..+.|+++|+||+|+.+.. .+...++..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 4543 45788889987653211 0 0011122222 2368999999999986543 234455555
Q ss_pred HhCC---------cEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 142 EIGI---------PFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 142 ~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
.+++ +++++||++| |+++++++|.+.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 5554 5899999999 99999999998875443
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=3.4e-24 Score=149.77 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
.|+++|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999877655544444434433344433 13478899999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHHHH------HhCCcEEEeecCCCCCHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFAD------EIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 161 (203)
|+++....+.. ..+..+.. .+.|+++|+||+|+....... ......+.. ...++++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99875322211 11222222 368999999999986432111 111111111 11368999999999999999
Q ss_pred HHHHHHHHH
Q 028813 162 FMAMAASIK 170 (203)
Q Consensus 162 ~~~l~~~~~ 170 (203)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=6e-24 Score=163.52 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=114.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc---------ccccchhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 76 (203)
+..++|+++|.+|+|||||+|+|++........++.+.+.....+.+++. ..+.+|||+|.. .+... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 35589999999999999999999997754444444555666667777432 588999999972 22221 22
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+... ..... ....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCC
Confidence 477899999999999988877777777666665555789999999999864321 11111 123568999999999
Q ss_pred CHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 ~i~~~~~~l~~~ 168 (203)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 145
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=150.73 Aligned_cols=168 Identities=40% Similarity=0.620 Sum_probs=137.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+||+++|++|||||||+++|.+..+...+.++.+..+........+..+++.+||++|+.+++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999988888887777777777666557899999999999999999999999999999
Q ss_pred EEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHh---CCcEEEe
Q 028813 87 VYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEI---GIPFMET 150 (203)
Q Consensus 87 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 150 (203)
++|..+ ..+.+....|...+......+.|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998 5556666789999888776679999999999997653 22222222222222 3348999
Q ss_pred ecC--CCCCHHHHHHHHHHHHHHHhc
Q 028813 151 SAK--DSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 151 Sa~--~~~~i~~~~~~l~~~~~~~~~ 174 (203)
|++ .+.++.++|..+...+.+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999999875544
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=3.4e-24 Score=150.86 Aligned_cols=154 Identities=23% Similarity=0.258 Sum_probs=108.2
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCcccc----ccc---hhhhccCCcEE
Q 028813 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF----RTI---TSSYYRGAHGI 84 (203)
Q Consensus 13 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~ 84 (203)
++|++|||||||+++|.+........+.++.+.....+.++ + ..+.+||+||.... ... ....+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999876422222333334444445455 4 67899999996321 122 23346789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813 85 IIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 85 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
++|+|+.++ .++..+..|...+..... .+.|+++|+||+|+..................+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777777754432 3689999999999965543322222233344567899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~ 168 (203)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=7.4e-24 Score=169.72 Aligned_cols=180 Identities=21% Similarity=0.241 Sum_probs=125.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (203)
...+|+|+|.+|||||||+++|++.... ....++.+.+.....+.+.+ ..+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4578999999999999999999987642 23445555555556666666 5688999999652 33335556
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+..+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+..+.+ ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 889999999999998755332 233333432 368999999999985432 1111222 2343 45799999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
|++++|++|.+.+.+.... ........++.+.+.++.+||+
T Consensus 186 gi~eL~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~~nvGKSS 226 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRV--GSASGGPRRVALVGKPNVGKSS 226 (472)
T ss_pred CcHHHHHHHHhhccccccc--ccccccceEEEEECCCCCCHHH
Confidence 9999999999988652221 1112356788888999998874
No 148
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.8e-23 Score=164.34 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=118.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc----c---cchhhhcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----R---TITSSYYR 79 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~ 79 (203)
....|+|+|.||||||||+++|++........+.++.......+...+ ..+.+||+||.... . ......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 446799999999999999999998765444445555566666676666 68999999995321 1 11222457
Q ss_pred CCcEEEEEEECCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC
Q 028813 80 GAHGIIIVYDVTD----QESFNNVKQWLNEIDRYA-----------SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG 144 (203)
Q Consensus 80 ~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 144 (203)
.+|++|+|+|+++ ++.++.+..+..++..+. ..++|+++|+||+|+.+.... .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 7999999999975 234555555555554332 136899999999998654332 222333334557
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813 145 IPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176 (203)
Q Consensus 145 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 176 (203)
++++++||+++.|+++++.+|.+.+...+...
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~ 346 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARAAE 346 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccc
Confidence 89999999999999999999999998776543
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.4e-23 Score=157.14 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=106.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--------cchhhhccC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG 80 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 80 (203)
+|+++|.+|||||||+|+|++..... +..+.++..........++ .++.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987542 2222222222222222233 578999999964321 113345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 159 (203)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876543 333333432 3689999999999864322 22333444444444 79999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028813 160 QAFMAMAASIKDRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
+++++|.+.+.+.-.
T Consensus 154 ~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 154 FLAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHHhCCCCCC
Confidence 999999888755433
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=4.1e-23 Score=142.55 Aligned_cols=146 Identities=22% Similarity=0.257 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhcc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYR 79 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 79 (203)
++|+++|++|+|||||++++.+.... ....++.+.+.....+...+ ..+.+||+||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 22334444455555555554 67899999997654321 224567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998776554433322 336899999999998764432 233446789999999999999
Q ss_pred HHHHHHHHHH
Q 028813 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=6.6e-24 Score=151.78 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT 74 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (203)
-+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+......+.+||+||+.++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999986 3332221 1223333444444444455889999999999998889
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-CCHHHHHHHHH-------HhCCc
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKAFAD-------EIGIP 146 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 146 (203)
..+++.+|++++|+|+++.. ......++..+. ..+.|+++|+||+|+.+... ...+++.++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 122233333332 23689999999999864332 11233344432 23678
Q ss_pred EEEeecCCCCCHHHH------HHHHHHHHHHH
Q 028813 147 FMETSAKDSTNVEQA------FMAMAASIKDR 172 (203)
Q Consensus 147 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~ 172 (203)
++++||++|.|+.++ +++|.+++.++
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999887555 44555555543
No 152
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=8e-24 Score=139.12 Aligned_cols=173 Identities=26% Similarity=0.496 Sum_probs=149.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-.+||.++|.+..|||||+-++.+.....++..+.+..+..+++.+.+.+..+.+||.+|++++..+......++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46899999999999999999999999888889999999999999999999999999999999999888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc---CCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KV---VSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
+||++.+.++..+.+|+.+.+......+| ++|++|.|+.-. .+ ....+.+.+++-++++++.||+-++.|+..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 99999999999999999999887777677 567999997321 11 1123456677888999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCC
Q 028813 162 FMAMAASIKDRMASQPSMN 180 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~ 180 (203)
|..+..++.+.....+...
T Consensus 178 FK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 178 FKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred HHHHHHHHhCCceeccccc
Confidence 9999999987766665443
No 153
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=7.2e-23 Score=160.11 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhh---ccCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGA 81 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 81 (203)
..|+|+|.||||||||+++|++........+.++.......+.+.+ ...+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3799999999999999999998764333344445555555555541 25799999999632 11222333 4568
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 82 HGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 82 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
+++++|+|+++. +.++.+..|.+++..+.. .++|+++|+||+|+... .+..+.+...++.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777778877766543 36899999999998432 244555666667889999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 028813 157 NVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~ 174 (203)
|+++++++|.+.+.+...
T Consensus 314 GI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 314 GLDELLYAVAELLEETPE 331 (424)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 999999999988876543
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=6.1e-24 Score=170.19 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=117.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccc-
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI- 73 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 73 (203)
+..++|+++|.+|+|||||+++|++... ..+..++++.+.....+..++ ..+.+|||||..+ +...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 3568999999999999999999998764 234556666666666777776 4568999999532 2211
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHH-HHHHhCCcEEEe
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKA-FADEIGIPFMET 150 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 150 (203)
...+++.+|++++|+|++++.+...+. ++..+. ..+.|+++|+||+|+.+.... ...++.. +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 123568999999999999887766553 333332 347899999999999653211 0111111 222234789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
||++|.|++++|..+.+.+..+....+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~ 389 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIP 389 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999998876666544
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=9.3e-23 Score=161.16 Aligned_cols=154 Identities=24% Similarity=0.273 Sum_probs=117.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998653 234445666677777788877 66789999997654332 2346
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
++.+|++++|+|++++.+.+.. |+..+. ..+.|+++|+||+|+.+. ....+...++.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776554 555443 236899999999998543 12344556678899999997 69
Q ss_pred HHHHHHHHHHHHHHHhc
Q 028813 158 VEQAFMAMAASIKDRMA 174 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~ 174 (203)
++++|+.|.+.+.+...
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998877653
No 156
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=6.6e-23 Score=157.56 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=111.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccch-------hh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTIT-------SS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~ 76 (203)
.+.++|+++|.+|||||||+++|++..+... ..+.++.......+..++ .++.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4567999999999999999999998776421 222223334444555555 5789999999743 22211 12
Q ss_pred hccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAK 153 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 153 (203)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ....+.++..... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 36789999999997653 33332 344444332 4677889999998543 2344555554443 579999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCC
Q 028813 154 DSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
+|.|+++++++|.+.+.+.-.-.+
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999998876655444
No 157
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=136.50 Aligned_cols=157 Identities=27% Similarity=0.505 Sum_probs=126.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..+.+.++|..+||||||.+....+.+.....|+.+ +....+.-.+ +.+.+||.+|+.+++++|..|++.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 457899999999999999999998888888888877 4444554444 899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--------CcEEEeecCCCCC
Q 028813 87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKDSTN 157 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 157 (203)
|+|+.+++.++..+..+..+ ..-.-.++|+++++||.|+++. +....+ ..++| +-.|.+|+++..+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~l---i~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIAL---IERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHH---HHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999888777766655 3323358999999999998653 232322 33333 3588999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKDR 172 (203)
Q Consensus 158 i~~~~~~l~~~~~~~ 172 (203)
++.+.+||++.....
T Consensus 170 id~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 170 IDITLDWLIEHSKSL 184 (186)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876544
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=4.8e-23 Score=163.98 Aligned_cols=164 Identities=23% Similarity=0.227 Sum_probs=114.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch----------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT---------- 74 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 74 (203)
...++|+++|.+++|||||+++|++.... ....++++.+.....+..++ ..+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 35689999999999999999999986532 33444555555555666665 478999999975543221
Q ss_pred -hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHH----hCCcEE
Q 028813 75 -SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADE----IGIPFM 148 (203)
Q Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~ 148 (203)
...++.+|++++|+|+.++.+..... ++..+ ...+.|+++|+||+|+.+... ..+.. ..+... ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence 23578899999999999876654432 22222 223689999999999972211 11222 222222 247999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMASQ 176 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 176 (203)
++||++|.|++++|+++.+.+..+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999998877665443
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=4.8e-23 Score=147.06 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CC---CCCccccceeeeEEEEEEeC------------CeEEEEEEEeCCCccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD----SY---IESYISTIGVDFKIRTVEQD------------GKTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 69 (203)
++|+++|++++|||||+++|+.. .+ ..+..++.+.+.....+.+. +....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 11 11222233333333333332 2357899999999876
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHH------
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFAD------ 141 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~------ 141 (203)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+..... ...+...+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5433334456789999999998754333322222 1111 2579999999999864322 11222222111
Q ss_pred -HhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 142 -EIGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 142 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..+++++++||++|.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988774
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=7.4e-23 Score=162.53 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=113.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 348999999999999999999998764 234455556666677777776 67899999997654322 2235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 788999999999998877665433332 3368999999999996543221 33457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKD 171 (203)
Q Consensus 158 i~~~~~~l~~~~~~ 171 (203)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=1.4e-22 Score=159.30 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc--ccchh------hhcc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTITS------SYYR 79 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~ 79 (203)
.++|+++|.+|+|||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|..+. ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987655444455555666666666542 26789999997332 11222 2368
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCH
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNV 158 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 158 (203)
.+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988777776555555555445789999999999864321 1111 1123455 588999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIKDR 172 (203)
Q Consensus 159 ~~~~~~l~~~~~~~ 172 (203)
++++++|.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988643
No 162
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.9e-22 Score=155.85 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhccCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 81 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 81 (203)
..|+|+|.||||||||+|+|++........+.++.......+...+ ...+.++|+||...-. ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3699999999999999999998765444445555555555565543 2368999999964311 1122347889
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCC
Q 028813 82 HGIIIVYDVT---DQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKD 154 (203)
Q Consensus 82 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 154 (203)
|++++|+|++ +.+.++....|++++..+.. .++|+++|+||+|+.....+ .+.++++....+ .+++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999988 45566777777777765432 35899999999998654322 234444544444 4799999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCC
Q 028813 155 STNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
+.|+++++++|.+.+.+.....+
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~ 340 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEA 340 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCC
Confidence 99999999999999876544333
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1e-22 Score=140.66 Aligned_cols=146 Identities=19% Similarity=0.149 Sum_probs=101.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhccCCc
Q 028813 12 LLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGAH 82 (203)
Q Consensus 12 ~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 82 (203)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986521 22233333444445555555 6889999999876543 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 161 (203)
++++|+|+.++.+.... .....+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443322 12222322 25899999999998654322 222334565 7899999999999999
Q ss_pred HHHHHHH
Q 028813 162 FMAMAAS 168 (203)
Q Consensus 162 ~~~l~~~ 168 (203)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 164
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=9.1e-23 Score=156.68 Aligned_cols=177 Identities=21% Similarity=0.193 Sum_probs=129.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY 78 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (203)
..|+++|.||+|||||+|+|++.... .+..|+.+.+.......+.+ ..|.++||+|.+.. ..+....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987754 45567777788888888877 56899999996532 22344457
Q ss_pred cCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813 79 RGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDS 155 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (203)
..+|+++||+|....-+ -+.+.+++. ..++|+++|+||+|-...+ +...+ +..+|+ .++.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~~e----~~~~e-fyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLKAE----ELAYE-FYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCchhh----hhHHH-HHhcCCCCceEeehhhc
Confidence 88999999999877433 223333332 3368999999999975221 22233 334564 7999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 156 TNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
.|+.++.+.++..+. ...+........+.++.+.+.|+.+||+
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs 193 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS 193 (444)
T ss_pred cCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence 999999999999985 2222222222578999999999999985
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.6e-22 Score=143.80 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------cceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYIS----------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
+|+|+|.+|+|||||+++|++......... +.+.......+... ...+.+||+||..++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999997765443211 12222223333333 368999999999888888
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH---------
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE--------- 142 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~--------- 142 (203)
+..++..+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+...... ....+.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987654322 233333332 46899999999998753221 12223333322
Q ss_pred -----hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 143 -----IGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 143 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
...+++++|+++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346899999999999999999998875
No 166
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-22 Score=130.24 Aligned_cols=158 Identities=22% Similarity=0.421 Sum_probs=126.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.++++|+.+|..++||||++.+|..... ....+|.+ +...++.+.+ +.+.+||.+|++..+..|++++....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 4679999999999999999999987663 34455555 5566666655 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 159 (203)
||+|..+.+.+++++..+..+ ........|+++.+||-|+++.. ..+++..+... ..+.+.++++.+|+|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999999998888887766555 33333578999999999997654 44555554432 23678999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
|-|.||++.+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999998764
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.4e-22 Score=161.39 Aligned_cols=177 Identities=21% Similarity=0.244 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc--------cccccchhhhccC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITSSYYRG 80 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 80 (203)
+|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+.+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23344555555666666666 57999999995 3344445667889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 159 (203)
+|++++|+|+.++.+... ..+...+.. .++|+++|+||+|+...... ..+ +..+++ +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987543222 112222322 26899999999998654321 122 335566 79999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 160 QAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
++++++.+.+...... ........++.+.+.++.+||.
T Consensus 150 ~ll~~i~~~l~~~~~~--~~~~~~~~~v~ivG~~~~GKSs 187 (429)
T TIGR03594 150 DLLDAILELLPEEEEE--EEEEDGPIKIAIIGRPNVGKST 187 (429)
T ss_pred HHHHHHHHhcCccccc--ccccCCceEEEEECCCCCCHHH
Confidence 9999999887543221 1223345678888888888864
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.7e-22 Score=159.86 Aligned_cols=175 Identities=22% Similarity=0.240 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhhcc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR 79 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 79 (203)
++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23344455556666677776 7899999999876 2333445678
Q ss_pred CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 80 GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
.+|++++|+|+.++.+. ..+..|+... +.|+++|+||+|+.+.. ....++ ...++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence 99999999999875432 2333343322 68999999999974421 222222 34566 48999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
|++++++++....... ........+.++.+.+.++.+||.
T Consensus 149 gv~~l~~~I~~~~~~~---~~~~~~~~~~~v~ivG~~n~GKSt 188 (435)
T PRK00093 149 GIGDLLDAILEELPEE---EEEDEEDEPIKIAIIGRPNVGKSS 188 (435)
T ss_pred CHHHHHHHHHhhCCcc---ccccccccceEEEEECCCCCCHHH
Confidence 9999999998743221 111113456788888999888874
No 169
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.1e-22 Score=134.25 Aligned_cols=114 Identities=34% Similarity=0.610 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
||+|+|.+|||||||+++|.+.... .......+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999987765 22233344455555666777767799999999998888777789999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028813 88 YDVTDQESFNNVKQW---LNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~ilv~nK~D 124 (203)
||++++.+++.+.++ +..+..... ..|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 999999999887554 555544333 599999999998
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=2.2e-22 Score=139.07 Aligned_cols=142 Identities=22% Similarity=0.272 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhhccCCcEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYYRGAHGII 85 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i 85 (203)
+|+++|.+|+|||||+++|.+.... ...+ ..+.+... .+||+||... +.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865421 1111 11222221 2699999632 2111223468999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--cEEEeecCCCCCHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--PFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+++..+. +..|+..+ ..+.|+++++||+|+.+. ..+...++....++ +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999987654 22333332 125789999999998542 34556677777774 899999999999999999
Q ss_pred HHHHHHHHHh
Q 028813 164 AMAASIKDRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
+|.+.+.+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9988876543
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=4.1e-22 Score=161.96 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=112.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||+..|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46689999999999999999999987776555555555555555555432 27899999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST 156 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 156 (203)
+|+|+++....+.... +......+.|+++++||+|+.+. ..+.+......++ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999987432222221 22222336899999999998543 2233333332222 479999999999
Q ss_pred CHHHHHHHHHH
Q 028813 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 ~i~~~~~~l~~ 167 (203)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.1e-21 Score=137.45 Aligned_cols=155 Identities=24% Similarity=0.255 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-----------chh
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS 75 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 75 (203)
.++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999986532 22333333344444555555 4678999999653311 012
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHHh----CCcEEEe
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADEI----GIPFMET 150 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~ 150 (203)
..+..+|++++|+|++++.+.... .++..+ ...+.|+++++||+|+.+......+.. ..+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~---~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLI---LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHH---HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 345789999999999987664432 222222 223689999999999876532222222 2222332 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028813 151 SAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=5.5e-22 Score=161.90 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------cceeeeEEEE--EEe---CCeEEEEEEEeCCCccc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIRT--VEQ---DGKTIKLQIWDTAGQER 69 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~ 69 (203)
.-+|+++|+.++|||||+++|+... +...+.. ..+.++.... +.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999998642 1111111 1233343332 333 45668999999999999
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---c
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---P 146 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 146 (203)
|...+..++..+|++|+|+|++++.+.+....|...+. .+.|+++|+||+|+.+.. ......++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98889999999999999999998766666666654442 368999999999985432 12233455555665 4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q 028813 147 FMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 147 ~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
++++||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988764
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=3.8e-22 Score=143.46 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEEEeC---------------------------C----
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTVEQD---------------------------G---- 54 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (203)
++|+++|+.++|||||++++.+... +.+.....+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976522 11111221211111111110 0
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--C
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--S 132 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~ 132 (203)
....+.|||+||+..+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1167899999999988777777788899999999998742111112222223222 12478999999998653221 1
Q ss_pred HHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 133 YETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
.+.++++...+ +++++++||++|.|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 13333433332 57899999999999999999998655
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=1.6e-22 Score=143.86 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=107.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
..++|+++|+.++|||||+++|+...... +.....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999998543211 111223334444444412334789999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH----HHHHHh-
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADEI- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~~~- 143 (203)
.|.......+..+|++|+|+|+.++.... ..+.+..+.. .+.|+++++||+|+...+ ..+..+ .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~--~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKE--LEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHH--HHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhh--HHHHHHHHHHHhccccc
Confidence 88877888899999999999998764422 2333333332 368899999999987221 111222 232333
Q ss_pred -----CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 144 -----GIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 144 -----~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
.++++++||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988764
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.2e-21 Score=148.45 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--------cchhhhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYY 78 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 78 (203)
+.-.|+|+|.+|||||||+|+|++...........+.......+... ...++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999877643222222212222222222 22689999999964322 2233356
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCC
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTN 157 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 157 (203)
..+|++++|+|+++...- .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 889999999999873221 1122222232 2368999999999997433333344455555444 6899999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 028813 158 VEQAFMAMAASIKDRMA 174 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~ 174 (203)
+++++++|.+.+.+...
T Consensus 159 v~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 159 VDELLDVIAKYLPEGPP 175 (292)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999988765433
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=1.2e-21 Score=159.73 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.|+++|.+++|||||+++|++.. ++.+..++.+.+.....+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3344455666666666676666 78999999999999888888889999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC--CHHHHHHHHHHh----CCcEEEeecCCC
Q 028813 86 IVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFMETSAKDS 155 (203)
Q Consensus 86 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 155 (203)
+|+|++++ .+.+.+ ..+.. .+.| +++++||+|+.+.... ..+++.++.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999873 333332 22322 2567 9999999999754322 123444554443 478999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAASIKDR 172 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~ 172 (203)
.|+++++.+|.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999988776543
No 178
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=8.2e-22 Score=143.95 Aligned_cols=167 Identities=18% Similarity=0.147 Sum_probs=115.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (203)
.+.--|+++|.||+|||||+|++++....-.+...+++......+...+ +.++.|+||||... +.......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3566799999999999999999999887654444444333444443332 47999999999432 23334455
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDST 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 156 (203)
+..+|+++||+|++++... .-+..++.+.. .+.|+++++||+|..............+..... ..++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 7899999999999874331 11222333333 357999999999987765422333333333333 479999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCC
Q 028813 157 NVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~~~ 177 (203)
|++.+.+.+...+.+.-.-.|
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCC
Confidence 999999999988876655444
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.7e-21 Score=162.85 Aligned_cols=182 Identities=19% Similarity=0.164 Sum_probs=121.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (203)
...+|+++|.+|+|||||+|+|++.... ....++.+.+.......+++ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4578999999999999999999986542 23344444444444455555 6789999999653 23334456
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (203)
+..+|++++|+|+.+...... ..|...+. ..++|+++|+||+|+.... .....+. ..+. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr---~~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLR---RAGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHH---hcCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence 789999999999976422111 23444443 2478999999999985432 1122221 2332 46799999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
|+.+++++|.+.+................++.+.+.++.+||+
T Consensus 423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSS 465 (712)
T PRK09518 423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS 465 (712)
T ss_pred CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHH
Confidence 9999999999988652221110112345788888999988874
No 180
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=3e-21 Score=134.36 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhcc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (203)
..+|+++|++|+|||||+++|.+.................. .........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998764322211111111111 11222336889999999654322 2334578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCH
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNV 158 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 158 (203)
.+|++++|+|++++... ....+...+... +.|+++|+||+|+........+....+....+ .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999986221 112222333222 57999999999987433333333444444443 68999999999999
Q ss_pred HHHHHHHHHH
Q 028813 159 EQAFMAMAAS 168 (203)
Q Consensus 159 ~~~~~~l~~~ 168 (203)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.1e-21 Score=139.05 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=103.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccch
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 74 (203)
.+..++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+||+||.. .+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 457789999999999999999999987533333333333332222222 2578999999942 233333
Q ss_pred hhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHHHhCCcEEE
Q 028813 75 SSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFME 149 (203)
Q Consensus 75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 149 (203)
..++.. ++++++++|++++...... .....+. ..+.|+++++||+|+....... .+.+.........++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 344443 4678888998775433221 1111222 2368899999999986543211 12233444444678999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 028813 150 TSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
+|++++.|+++++++|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999877653
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.3e-21 Score=161.34 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=112.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceee--eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVD--FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.+...|+|+|.+++|||||+++|...........+.+.+ .+...+...+....+.||||||+..|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466899999999999999999999876654443333322 233333333445889999999999999989889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH-------HHHhC--CcEEEeecCC
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF-------ADEIG--IPFMETSAKD 154 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 154 (203)
+|+|+|+++....+..+.+ ..+ ...+.|+++++||+|+.... .+.+... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999875332222221 222 23468999999999986532 2222221 12233 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~ 169 (203)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998764
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.6e-21 Score=160.86 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=112.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+...|+|+|..++|||||+++|....+......+.+.+.....+.+++ ..+.||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 5778999999999999999999988766554444444444444555555 67999999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-------HHHHhC--CcEEEeecCCCC
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-------FADEIG--IPFMETSAKDST 156 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~ 156 (203)
||+|+++...-+.... +......+.|+++++||+|+.+.. .+.+.. +...++ ++++++||++|.
T Consensus 366 LVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 9999987432222222 222223468999999999986432 121111 122233 689999999999
Q ss_pred CHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 ~i~~~~~~l~~~ 168 (203)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998764
No 184
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-22 Score=133.96 Aligned_cols=161 Identities=26% Similarity=0.402 Sum_probs=124.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC------C-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS------Y-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY 78 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 78 (203)
...+.++|+|..++|||||+.++.... . +....++.+ ....++.+.+ ..+.+||.+|+...+++|..+|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence 355789999999999999999875321 1 122334444 4455555554 6889999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH------HhCCcEEEee
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD------EIGIPFMETS 151 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~S 151 (203)
..++++|+++|+++++.++.....+..+ ......+.|+++.+||.|+.+.. ..+++...+. +..+++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence 9999999999999999888776655544 44455689999999999986543 3344444333 2247899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~~ 172 (203)
|++|+||++.+.|+...+..+
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999999877
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=155.57 Aligned_cols=162 Identities=24% Similarity=0.231 Sum_probs=111.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------h
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T 74 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 74 (203)
..++|+++|.+|+|||||+++|++... .....++++.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 569999999999999999999997653 334445555555555555555 56789999996432211 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH----hCCcEEEe
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE----IGIPFMET 150 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~ 150 (203)
...+..+|++|+|+|+.++.+..... +...+. ..+.|+++++||+|+.+... ..+....+... ..++++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~---~~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLAL---EAGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEE
Confidence 23567899999999999876654432 222232 23689999999999864321 11111222222 24799999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
||++|.|+.++++.+.+....+...
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~~~~ 349 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENANRR 349 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCc
Confidence 9999999999999998877766544
No 186
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.88 E-value=5.7e-21 Score=159.47 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=114.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------hhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------TSS 76 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 76 (203)
+.++|+++|.||+|||||+|+|++........+..+.+.....+..++ .++.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999998766555556555555555554444 78899999998765431 112
Q ss_pred h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813 77 Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 77 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
+ ...+|++++|+|+++.+... .+..++.+ .+.|+++++||+|+.+.+... ...+++.+.++++++++|+++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 2 24789999999998865422 23333433 368999999999986544443 456778888999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASI 169 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~ 169 (203)
++|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988765
No 187
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=1e-20 Score=124.21 Aligned_cols=164 Identities=26% Similarity=0.419 Sum_probs=135.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCccccceeeeEEEEEEeC-CeEEEEEEEeCCCcccc-ccchhhhccCCc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF-RTITSSYYRGAH 82 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d 82 (203)
+..|++++|..++|||++++.|+..+.. ....+|.. +++...++.+ +..-.+.++||.|.... ..+-+++++-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 5679999999999999999999865442 34455555 5555555544 33457899999997665 667788899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
++++||+..+++||+.+...-..|..+.. +.+|+++++||.|+.++..+..+....|+.+..+.++++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999888776666755543 46899999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028813 162 FMAMAASIKD 171 (203)
Q Consensus 162 ~~~l~~~~~~ 171 (203)
|.+|...+..
T Consensus 167 f~~l~~rl~~ 176 (198)
T KOG3883|consen 167 FTYLASRLHQ 176 (198)
T ss_pred HHHHHHhccC
Confidence 9999887763
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.88 E-value=2.3e-21 Score=158.25 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=110.9
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhc--cCCcEEEE
Q 028813 15 GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGIII 86 (203)
Q Consensus 15 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 86 (203)
|.+|+|||||+|+|.+........++.+.+.....+.+++ ..+.+||+||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876556667777777767777766 56899999998776543 23333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|+|+++.+.. ..+..++. ..+.|+++++||+|+.+..... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875432 22222232 2368999999999986544443 346777888899999999999999999999998
Q ss_pred HHH
Q 028813 167 ASI 169 (203)
Q Consensus 167 ~~~ 169 (203)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 189
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=2.4e-21 Score=136.83 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=96.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 73 (203)
+....++|+++|.+|+|||||+++|.+........++.+.+.....+..++ .+.+||+||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346788999999999999999999998753333223333333333333333 68999999943 22222
Q ss_pred hhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhC--Cc
Q 028813 74 TSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIG--IP 146 (203)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 146 (203)
...++. .+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+..... ...+.++......+ ++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 333443 45799999999875443333 22333322 3689999999999864322 12334444555443 58
Q ss_pred EEEeecCCCCCHH
Q 028813 147 FMETSAKDSTNVE 159 (203)
Q Consensus 147 ~~~~Sa~~~~~i~ 159 (203)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=7.4e-21 Score=159.04 Aligned_cols=164 Identities=22% Similarity=0.224 Sum_probs=114.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccc-h
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI-T 74 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 74 (203)
..++|+++|.+|||||||+++|++.... ....++++.+.....+.+++ ..+.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 23445555566666666776 4567999999532 1111 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-HHHHh----CCcEEE
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-FADEI----GIPFME 149 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~ 149 (203)
...++.+|++++|+|++++.+..... ++..+. ..++|+++|+||+|+.+... .+..+. +.... .++++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~---~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAV---DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468899999999999887766553 233332 23689999999999965321 122222 11111 357899
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHhccCCC
Q 028813 150 TSAKDSTNVEQAFMAMAASIKDRMASQPS 178 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 178 (203)
+||++|.|++++++.+.+.+.++....+.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T 629 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPT 629 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence 99999999999999999988876554443
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=1e-20 Score=130.61 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-------chhhhccCCcEE
Q 028813 13 LIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------ITSSYYRGAHGI 84 (203)
Q Consensus 13 v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~ 84 (203)
++|++|||||||++++.+.... .....+.+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986544 33333333333434443331 36889999999765533 334477899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH---HHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET---AKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
++++|+.+........ +.... ...+.|+++|+||+|+.......... ........+++++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877654443 22222 23468999999999987644322211 12222334579999999999999999
Q ss_pred HHHHHHH
Q 028813 162 FMAMAAS 168 (203)
Q Consensus 162 ~~~l~~~ 168 (203)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999865
No 192
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=1.8e-20 Score=134.64 Aligned_cols=118 Identities=23% Similarity=0.395 Sum_probs=86.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC-cEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIIVY 88 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (203)
+|+++|+++||||||+++|....+.....++ ............+....+.+||+||+.++...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765544332 2122221221123446899999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHh---hcCCCCcEEEEEeCCCCCCC
Q 028813 89 DVTDQ-ESFNNVKQWLNEIDR---YASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 89 d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~ilv~nK~D~~~~ 128 (203)
|+.+. .++..+..|+..+.. ....+.|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 566666665544421 22357999999999998643
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=142.54 Aligned_cols=165 Identities=25% Similarity=0.221 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------h
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T 74 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 74 (203)
..++|+|+|.||+|||||+|+|++... -.+..++++.+.-...+.+++ ..+.++||+|..+-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999998764 345667777777778888877 67788899995433222 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-Hh----CCcEEE
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EI----GIPFME 149 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (203)
...+..+|++++|+|+..+.+-+. ...+......+.++++++||+|+.+.+....+..+.... .. .++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 223578999999999998876332 222333334478999999999997764333343333222 22 368999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813 150 TSAKDSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
+||+++.|+..+|+.+......+....+
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccC
Confidence 9999999999999999888877766544
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.8e-20 Score=153.20 Aligned_cols=159 Identities=23% Similarity=0.283 Sum_probs=113.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Cc------cccceeeeEE--EEEEe---CCeEEEEEEEeCCCcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIE-----SY------ISTIGVDFKI--RTVEQ---DGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~ 68 (203)
+.-+++++|+.++|||||+.+|+... ... .. +...+.++.. ..+.+ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999998532 110 00 1112222322 22222 4556899999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc--
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-- 146 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 146 (203)
+|...+...+..+|++|+|+|++++...+....|.... ..+.|+++|+||+|+.+... .....++....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 99888889999999999999999876555555554332 23689999999999854321 22234444445654
Q ss_pred -EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 147 -FMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 147 -~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
++++||++|.|+++++++|.+.+..
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999987753
No 195
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=4.7e-23 Score=139.48 Aligned_cols=196 Identities=33% Similarity=0.561 Sum_probs=161.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCccccccchhhhccCCcE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
++..++++|+|.-++|||+++.+++...+...+..+.+.++..+...++.+ .+++.+||..|++++..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 467899999999999999999999999888888889998888888877765 4678899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCC-HHHHHHHHHHhCC-cEEEeecCCCCC
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVS-YETAKAFADEIGI-PFMETSAKDSTN 157 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~ 157 (203)
.++|||++...+++....|.+.+..... ...|+++..||+|........ ...+.++..++|+ .-+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 9999999999999999999998844322 346789999999986543322 4667888888886 789999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCC
Q 028813 158 VEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC 200 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 200 (203)
+.|+-..|++.+..+-.+.+.....+-.++..+..+..+..||
T Consensus 182 i~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s~~~g~ 224 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPSEAAGR 224 (229)
T ss_pred hhHHHHHHHHHHHhhccCCcccccccccccCccccCcchhhhh
Confidence 9999999999999887776666666666666665555544444
No 196
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=1.3e-20 Score=122.25 Aligned_cols=154 Identities=28% Similarity=0.420 Sum_probs=120.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+++||+++|..++|||||++.|.+.. ++...++.+ +..+.+...+ .+++.+||.+|+...+..|..||.++|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 4789999999999999999999998765 345556666 5555665553 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------CCcEEEeecCCC
Q 028813 85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--------GIPFMETSAKDS 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 155 (203)
|||+|.+|.-.++++.+.+-++ ...+....|+++..||.|+...... ++.+... -+.+-+||+..+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-----eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-----EEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-----HHHHHhcchhhhhhceEEeeeCccccc
Confidence 9999999988888886655554 4444457999999999998544322 1222222 246889999999
Q ss_pred CCHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAA 167 (203)
Q Consensus 156 ~~i~~~~~~l~~ 167 (203)
+|+..-.+|+..
T Consensus 165 eg~~dg~~wv~s 176 (185)
T KOG0074|consen 165 EGSTDGSDWVQS 176 (185)
T ss_pred cCccCcchhhhc
Confidence 999999888754
No 197
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=128.13 Aligned_cols=163 Identities=30% Similarity=0.572 Sum_probs=142.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++++++|..|.||||++++++.+.+...+.++.+.+.....+..+...+++..|||+|++.+......++-++.+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47999999999999999999999999999999999988888877776667999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
+||+..+.++..+..|...+.+.... +|+++++||.|..... .......+-...++.+++.|++.+.|...-|-|+.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 99999999999999999988776664 9999999999985443 12223445556789999999999999999999999
Q ss_pred HHHHHH
Q 028813 167 ASIKDR 172 (203)
Q Consensus 167 ~~~~~~ 172 (203)
+.+...
T Consensus 166 rKl~G~ 171 (216)
T KOG0096|consen 166 RKLTGD 171 (216)
T ss_pred hhhcCC
Confidence 988744
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=6.4e-20 Score=149.01 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=104.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------------CeEEEEEEEeCCCcccc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQERF 70 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 70 (203)
+..-|+++|++++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34569999999999999999999876643322222211111111110 01123889999999999
Q ss_pred ccchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC------------CHHH
Q 028813 71 RTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------------SYET 135 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~------------~~~~ 135 (203)
..++..++..+|++++|+|+++. .+++.+. .+. ..+.|+++++||+|+...... ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 98888899999999999999873 3433322 222 236899999999998632100 0000
Q ss_pred ------------HHHHHH------------Hh--CCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 136 ------------AKAFAD------------EI--GIPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 136 ------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
..++.. .+ .++++++||++|+|+++++++|......+.
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 001110 11 268999999999999999999876655433
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=3.2e-19 Score=130.61 Aligned_cols=151 Identities=23% Similarity=0.210 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhccCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH 82 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 82 (203)
+++++|.+|+|||||+++|.+........+.++.+.....+.+++ ..+.+||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333334444455556666666 688999999964322 12345688999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 028813 83 GIIIVYDVTDQE-SFNNVKQWLNEI-----------------------------------------DRY----------- 109 (203)
Q Consensus 83 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~----------- 109 (203)
++++|+|++++. ....+...+... ..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333322211 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 110 -----------A--SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 110 -----------~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
. ....|+++|+||+|+... ++...++. ..+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 113689999999998532 33444443 34689999999999999999998765
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1e-19 Score=140.39 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=116.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
.-++++++|.||+|||||+|+|++.... ....++++.+.-...+.++| +.+.+.||+|..+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4489999999999999999999987753 45678888899999999999 88899999996654333 2234
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
++.+|.++||+|++.+.+-... ..+. ....++|+++|.||.|+........ +....+.+++.+|++++.|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~----~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL----ALIE-LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH----HHHH-hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence 6889999999999986321111 1111 4455789999999999976543211 1112345799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKDR 172 (203)
Q Consensus 158 i~~~~~~l~~~~~~~ 172 (203)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999888766
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=3.2e-20 Score=123.42 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhccCCcEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGII 85 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 85 (203)
||+++|+.+||||||+++|.+... .+..|+...+. + .++||||.- .+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999999665 33344332222 1 246999832 33333444567899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 164 (203)
++.|++++.+.-. ..+.... ++|+|-|+||+|+... ....+..+++....|+ .+|.+|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998754110 0111111 5799999999999732 2355667778788887 5799999999999999999
Q ss_pred HH
Q 028813 165 MA 166 (203)
Q Consensus 165 l~ 166 (203)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 85
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=7.3e-20 Score=145.31 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=101.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|++++|||||+++|++..- ..+..+..+.+.....+..+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 3679999999999999999999984221 11123444444444444444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--- 130 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--- 130 (203)
.+.+.+|||||+..|.......+..+|++++|+|+++...+ .....++..+.... ..|+++++||+|+.+...
T Consensus 83 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 -KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred -CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHH
Confidence 47899999999988765555557889999999999873111 11122222232221 246899999999865221
Q ss_pred -CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813 131 -VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 131 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 163 (203)
...+++..+....+ ++++++||++|.|+.+..+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234444554444 5799999999999998653
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1e-19 Score=144.40 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=103.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYI-----------------------------ESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|+.++|||||+.+|+.. ... .+...+.+.+.....+..+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~- 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD- 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence 56799999999999999999999852 111 1122244444444444444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV- 131 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~- 131 (203)
.+.+.+||+||+++|.......+..+|++++|+|++++++.. ....++..... .. ..|+++++||+|+.+....
T Consensus 84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cC-CCeEEEEEEChhccCccHHH
Confidence 478999999999888666666678999999999999874321 11111222222 21 3578999999999642221
Q ss_pred ---CHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813 132 ---SYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 163 (203)
..+++..++...+ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 1234455555554 5799999999999987553
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=1.3e-19 Score=142.65 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=106.2
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCccccceeeeEEEEEEe------------------C--C---
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRTVEQ------------------D--G--- 54 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~--- 54 (203)
|=+.....++|+++|+.++|||||+.+|.+.... .+.....+.........+ + +
T Consensus 2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 3445677899999999999999999999763221 111222222221111000 0 0
Q ss_pred -eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813 55 -KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV- 131 (203)
Q Consensus 55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~- 131 (203)
....+.+||+||+.+|..........+|++++|+|+.++. ..+. ...+..+.... ..|+++|+||+|+.+....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDIIG--IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHcC--CCcEEEEEEeeccccchhHH
Confidence 1257899999999888665555566789999999999643 1111 12222232221 2468999999998654321
Q ss_pred -CHHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 132 -SYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 132 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..+.+..+...+ +++++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 123344444332 478999999999999999999987663
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=1.1e-19 Score=143.08 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=105.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEE--------------EEe----CC------eEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRT--------------VEQ----DG------KTIK 58 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 58 (203)
...++|+++|.+++|||||+++|.+..... +.....+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997642211 11111111111000 000 11 1367
Q ss_pred EEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHH
Q 028813 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETA 136 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~ 136 (203)
+.+||+||+++|...+...+..+|++++|+|++++.......+.+..+.... ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999998777777888999999999986431112222333332221 2468999999998654321 12334
Q ss_pred HHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 137 KAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 137 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..+.... +++++++||++|.|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444332 578999999999999999999987654
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=1.4e-19 Score=130.56 Aligned_cols=147 Identities=24% Similarity=0.208 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------ccccceeeeEEEEEEeCCeEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIES-------------------------------YISTIGVDFKIRTVEQDGKTIK 58 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
+|+++|.+++|||||+++|+...-... .....+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999975321100 112333333344444444 68
Q ss_pred EEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC----CHH
Q 028813 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SYE 134 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~----~~~ 134 (203)
+.+|||||+.++.......+..+|++++|+|++++..-.. ......+.... ..++++|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8999999998876656667889999999999987532111 12222222221 2357888999998643221 112
Q ss_pred HHHHHHHHhC---CcEEEeecCCCCCHHHH
Q 028813 135 TAKAFADEIG---IPFMETSAKDSTNVEQA 161 (203)
Q Consensus 135 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 161 (203)
++.++...++ .+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3444455555 35899999999999854
No 207
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.4e-19 Score=142.96 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=121.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY-- 78 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 78 (203)
+..+++++|+||+|||||+|+|++.+..-..+++.+.+.....+...+ .++++.|.||..+... ..++++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 346799999999999999999999988888889988888888888877 5688999999544322 233333
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
...|++|-|+|+++.+.-..+--.+.+ -+.|+++++|++|..+...+.. +.+++.+..|+|+++++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence 457999999999987643332222222 2789999999999866554433 366778889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIKDR 172 (203)
Q Consensus 159 ~~~~~~l~~~~~~~ 172 (203)
++++..+.+....+
T Consensus 153 ~~l~~~i~~~~~~~ 166 (653)
T COG0370 153 EELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHHhcccc
Confidence 99999988755443
No 208
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=4.3e-19 Score=123.72 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccchhhhcc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSSYYR 79 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 79 (203)
.|+++|.+|+|||||++.+.+........++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996544444444444344444444443 889999999533 2222333333
Q ss_pred ---CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHH--HhCCcEEEe
Q 028813 80 ---GAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFAD--EIGIPFMET 150 (203)
Q Consensus 80 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 150 (203)
..+++++++|...... ...+..|+... +.|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578899999876532 22333343322 57999999999985433211 111222222 234689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028813 151 SAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~ 168 (203)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999865
No 209
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=117.86 Aligned_cols=158 Identities=20% Similarity=0.299 Sum_probs=116.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----c--ccc---ceeeeEEEEEEeCCeEEEEEEEeCCCccccccch
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-----Y--IST---IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-----~--~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (203)
.....||+|.|+.++||||+++++........ . ... ++...........+ +..+++++|||+.+|.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence 35778999999999999999999987553111 1 111 12222222222222 2578999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeec
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSA 152 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 152 (203)
..+.+.++++|+++|.+.+..+ +.+..+..+..... .|+++.+||.|+.+.. ..+.+++..... ..+++..++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999988877 44444544433322 8999999999996543 455666655544 789999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAAS 168 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~ 168 (203)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999998887765
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=9.4e-19 Score=142.70 Aligned_cols=160 Identities=14% Similarity=0.189 Sum_probs=110.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYIES------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
..-+|+++|+.++|||||+++|+. +.+... .....+.++......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999996 222221 122334455555555555558999999999999998
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-CCHHHHHHHHHH-------hC
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKAFADE-------IG 144 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 144 (203)
.+..+++.+|++|+|+|+.+...... +.++..+. ..+.|.++++||+|+...+. ...+++..+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~---~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAF---AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHH---HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 89999999999999999987533222 22222222 23689999999999864332 112233333221 34
Q ss_pred CcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 028813 145 IPFMETSAKDST----------NVEQAFMAMAASIK 170 (203)
Q Consensus 145 ~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 170 (203)
+|++.+||++|. |+..+++.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 789999999998 57788877776664
No 211
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=6.1e-19 Score=125.58 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=96.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
.++|+++|..++|||||+++|++... +.+.....+ .......+.....++.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCcc--EEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 48999999999999999999985310 111122333 333333344444788999999998887
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHh----
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEI---- 143 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~---- 143 (203)
......+..+|++++|+|+...-.- .....+..+.. .+.| +++++||+|+...... ...++..+....
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7777778899999999999865322 12223333332 2566 7789999998643221 112344444443
Q ss_pred -CCcEEEeecCCCCCHH
Q 028813 144 -GIPFMETSAKDSTNVE 159 (203)
Q Consensus 144 -~~~~~~~Sa~~~~~i~ 159 (203)
+++++++||++|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 3689999999998864
No 212
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.4e-20 Score=120.57 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=116.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++..+|+++|..|+||||+.-++.-++.... .|+.+ +....+.+ +++++.+||..|+.+.+..|+.++.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 4789999999999999998887775554322 23333 34444444 4489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH----HHHhCCcEEEeecCCCCCHHH
Q 028813 86 IVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
||+|.+|.+.+..... ++..+....-.+..+++++||.|..... ...+....+ .+..-+.+++.||.+|.|+++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999987766544 4444432222346788999999975432 111211111 111126899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 161 AFMAMAASIKDR 172 (203)
Q Consensus 161 ~~~~l~~~~~~~ 172 (203)
+.+||.+.+.++
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999988643
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=5.7e-19 Score=144.67 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-|+++|+.++|||||+++|.+.. ++.+...+.+++.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48899999999999999999743 3333334445444433443322 2458999999999987777777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC--CHHHHHHHHHHhC---CcEEEeecCCCCCHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKAFADEIG---IPFMETSAKDSTNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 160 (203)
|+|++++..- ...+.+..+... +.| +++|+||+|+.+.... ..+++.++....+ ++++++|+++|.|+++
T Consensus 81 VVda~eg~~~-qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMA-QTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999874221 112222223222 355 5799999998653221 1233444444443 6899999999999999
Q ss_pred HHHHHHHHHH
Q 028813 161 AFMAMAASIK 170 (203)
Q Consensus 161 ~~~~l~~~~~ 170 (203)
++++|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999986544
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=7e-19 Score=128.96 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC------------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|++|+|||||+++|+...-.. +.....+.......+.+++ .++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 58999999999999999998532100 0111122223334444444 789999999999988
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
..+...++.+|++++|+|+.+.... ....++..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 8888899999999999999876442 23344444433 3689999999999863
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=3.8e-19 Score=145.05 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCC--------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD--SYIE--------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
+|+|+|+.++|||||+++|+.. .+.. +.....++......+.+.+ +.+.+|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 7999999999999999999852 2211 1112223333333444544 89999999999999888
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHH-------HhCC
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI 145 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~ 145 (203)
+...+..+|++++|+|+.+.. ......|+..+.. .+.|+++++||+|+.+.+.. ..+++..++. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 888999999999999998643 2333455554433 36899999999998653311 1223333332 2357
Q ss_pred cEEEeecCCCC----------CHHHHHHHHHHHHH
Q 028813 146 PFMETSAKDST----------NVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 170 (203)
+++.+||++|. |+..+|+.|.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999995 79999988888765
No 216
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=5.9e-19 Score=128.88 Aligned_cols=169 Identities=18% Similarity=0.183 Sum_probs=111.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc------------cc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------RT 72 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~ 72 (203)
.-+.++|+|+|.||+|||||.|.+.+...........+++....-+... ...++.|+||||.-.. ..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4588999999999999999999999998877666655544444444333 3479999999993211 11
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-------------C---HHHH
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-------------S---YETA 136 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-------------~---~~~~ 136 (203)
.....+..+|++++|+|+++...... ...+..+..+. ..|-++|+||.|......+ . .+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 12234678999999999996432111 12233333332 5788999999997544211 1 1111
Q ss_pred HHHHHHh---------CC----cEEEeecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813 137 KAFADEI---------GI----PFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 137 ~~~~~~~---------~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
++|...- ++ .+|.+||+.|.|++++.+||..++...-+..+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~ 278 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP 278 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence 1111110 12 38999999999999999999988876655554
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=2.1e-18 Score=140.65 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=102.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeee--EEEEEEe----CCeE-----E-----EEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF--KIRTVEQ----DGKT-----I-----KLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-----~-----~~~i~D~~g~~~ 69 (203)
.+...|+++|++++|||||+++|.+...........+.+. +...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4567899999999999999999987654333222211111 1111110 0111 1 268999999999
Q ss_pred cccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC----C----------
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----S---------- 132 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~----~---------- 132 (203)
|..++...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888899999999999987 44443332 2222 36899999999998521100 0
Q ss_pred --HH-------HHHHHHHHh---------------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 133 --YE-------TAKAFADEI---------------GIPFMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 133 --~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
.+ .+....... .++++++||++|.|++++++.+...+.+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 00 000111111 2579999999999999999998765543
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=2.8e-19 Score=129.99 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCCeEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDGKTIK 58 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
+|+++|++++|||||+.+|+...- ..+.....+.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999963210 011122333344444455544 78
Q ss_pred EEEEeCCCccccccchhhhccCCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc
Q 028813 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES------FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KV 130 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~ 130 (203)
+.+||+||+..+...+...+..+|++|+|+|++++.. .......+...... ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence 9999999988776666667788999999999987421 11112222222222 13688999999998632 11
Q ss_pred CCH----HHHHHHHHHhC-----CcEEEeecCCCCCHH
Q 028813 131 VSY----ETAKAFADEIG-----IPFMETSAKDSTNVE 159 (203)
Q Consensus 131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 159 (203)
... +.+..+....+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111 12222333433 579999999999987
No 219
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=127.58 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=116.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRG 80 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (203)
.-.+.+||.||+|||||++++..........+.++......++.+++- .++++-|+||.-+- .-..-..++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 345889999999999999999987766566666666666666666553 24889999994321 1112334678
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCC
Q 028813 81 AHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKD 154 (203)
Q Consensus 81 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 154 (203)
++.++||+|++.+ ..++.++.+..+++.+.. ...|.++|+||+|+.+.+ ...+.+++....-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 8999999999988 778888777777755543 468999999999986332 22346677666644 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAAS 168 (203)
Q Consensus 155 ~~~i~~~~~~l~~~ 168 (203)
++|+.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.4e-18 Score=119.54 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=107.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 73 (203)
|.+...-|+++|.+|+|||||||+|+++........+.|.+.....+.+++ .+.+.|.||-. .+...
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 345778899999999999999999999774333344455556666676766 47889999932 23333
Q ss_pred hhhhcc---CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC----
Q 028813 74 TSSYYR---GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---- 144 (203)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---- 144 (203)
...|++ +..++++++|+..+... .++.+|+... +.|+++++||+|.....+.. ......+....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~ 169 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence 444443 35688999998765432 2333344333 79999999999987654322 22233333332
Q ss_pred Cc--EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 145 IP--FMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 145 ~~--~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
.. ++..|+..+.|++++...|.+.+..
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 8889999999999999999887754
No 221
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=6.2e-18 Score=128.48 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=122.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (203)
.....|.++|-+|+|||||+|+|++........-+.+.+.....+.+.+ ...+.+-||.|.-+ |.+ .-.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHH
Confidence 4678899999999999999999998776655555666677777777764 35788899999432 222 112
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
-...+|++++|+|++++...+.+......+....-...|+++|+||+|+..+.. .......... ..+.+||++|.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCc
Confidence 246899999999999998877777777777777666799999999999865443 1111111112 58999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 028813 157 NVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~ 174 (203)
|++.+++.|.+.+.....
T Consensus 343 gl~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 343 GLDLLRERIIELLSGLRT 360 (411)
T ss_pred CHHHHHHHHHHHhhhccc
Confidence 999999999998885543
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.4e-18 Score=134.24 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=102.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|+.++|||||+++|++... ..+.....+ .......+......+.++|+||+.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGIT--INTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCcc--EEEEeeEecCCCcEEEEEECCCHH
Confidence 35679999999999999999999986311 111122333 333444444445688999999998
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCC---HHHHHHHHHHhC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~ 144 (203)
+|.......+..+|++++|+|+.+...... .+.+..+... ++| +++++||+|+.+..... .+++..+....+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 886666666788999999999986432222 2223333322 577 67889999986433211 123444444444
Q ss_pred -----CcEEEeecCCCC--------CHHHHHHHHHHHH
Q 028813 145 -----IPFMETSAKDST--------NVEQAFMAMAASI 169 (203)
Q Consensus 145 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~ 169 (203)
++++++||++|. ++.++++.|.+.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 589999999983 4555555555443
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=7.4e-18 Score=132.44 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|.+++|||||+++|++... ..+.....+ .......+.....++.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT--~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGIT--INTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCce--EEEeeeEEcCCCcEEEEEECCCHH
Confidence 45789999999999999999999986210 111122333 333333344444688999999998
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccC---CHHHHHHHHHHhC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~~ 144 (203)
+|.......+..+|++++|+|+.+..... ..+.+..+. ..++|.+ +++||+|+.+.... ...++..+...++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 88666667778899999999998743221 223333332 2257755 57999998643221 1123444554443
Q ss_pred -----CcEEEeecCCCC----------CHHHHHHHHHHH
Q 028813 145 -----IPFMETSAKDST----------NVEQAFMAMAAS 168 (203)
Q Consensus 145 -----~~~~~~Sa~~~~----------~i~~~~~~l~~~ 168 (203)
++++++|++++. ++.++++.|.+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 679999999985 455566555544
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=8.6e-18 Score=132.11 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=98.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS----------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
.+..++|+++|+.++|||||+++|++.. ...+.....+.+ ...+.++.....+.+||+||+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 4678999999999999999999997420 011122333333 3444444455788999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccCC---HHHHHHHHHHhC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~~---~~~~~~~~~~~~ 144 (203)
+|..........+|++++|+|+.++...+. .+.+..+... +.|.+ +++||+|+.+..... .++++.+...++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 886666556678899999999987432221 2223333222 56755 689999986533211 224555555554
Q ss_pred -----CcEEEeecCCCC-CHHHH
Q 028813 145 -----IPFMETSAKDST-NVEQA 161 (203)
Q Consensus 145 -----~~~~~~Sa~~~~-~i~~~ 161 (203)
++++++|++++. |..++
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred CCccCccEEECccccccccCCch
Confidence 789999999874 44333
No 225
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.4e-17 Score=118.03 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccee---eeEEEEEEeCCeEEEEEEEeCCCccccccchhh-----hccC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV---DFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS-----YYRG 80 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~ 80 (203)
++|+++|.+|+|||||+|+|++...+.......+. +.....+... ....+.+||+||.......... .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986543322221110 1111111111 1236899999996533222222 2567
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------CCHHHHHHH----HHHhC
Q 028813 81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKV-----------VSYETAKAF----ADEIG 144 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----------~~~~~~~~~----~~~~~ 144 (203)
+|+++++.+.. +... ..++..+... +.|+++|+||+|+..... ...+.+++. ....+
T Consensus 81 ~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 89888885422 2222 2344555443 579999999999843211 011111111 11222
Q ss_pred ---CcEEEeecC--CCCCHHHHHHHHHHHHHHHhc
Q 028813 145 ---IPFMETSAK--DSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 145 ---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~ 174 (203)
-++|.+|+. .+.|+.++.+.|+..+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 368999998 579999999999999987644
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=122.00 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=116.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-----ccccch----hh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTIT----SS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~----~~ 76 (203)
.....|+|.|.||+|||||++++++......+.|.++-.++..++..++ .+++++||||.- +.+.+. ..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 4677899999999999999999999888777778888888888888877 788899999932 122211 11
Q ss_pred hccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecC
Q 028813 77 YYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAK 153 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (203)
.-+-.++++|++|.+... +.+.-..++.++..... .|+++|+||+|..+...+ +++.......+ .....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 224467899999998643 55665667777877664 799999999998755433 33333333334 346778899
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028813 154 DSTNVEQAFMAMAASIK 170 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~ 170 (203)
.+.+++.+...+.....
T Consensus 320 ~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 320 KGCGLDKLREEVRKTAL 336 (346)
T ss_pred ehhhHHHHHHHHHHHhh
Confidence 99999988888777644
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.8e-17 Score=120.52 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccc--------------c---------ceeeeE---------------EEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYIS--------------T---------IGVDFK---------------IRTVE 51 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--------------~---------~~~~~~---------------~~~~~ 51 (203)
||+++|+.++|||||+++|....+...... . .+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986544221100 0 000000 01111
Q ss_pred eCCeEEEEEEEeCCCccccccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 52 QDGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
. ....+.++|+||+.++.......+. .+|++++|+|+..+..-. ...++..+.. .++|+++|+||+|+.+..
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 1 2357899999999888655444443 689999999987654311 1223333322 368999999999985432
Q ss_pred cCC--HHHHHHHHH--------------------------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 130 VVS--YETAKAFAD--------------------------EIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 130 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
... .+.+.++.. ...+|+|.+|+.+|.|+++++..|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 211 111222211 01248999999999999999988754
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=7.5e-18 Score=122.14 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------cccceeeeE--EEEEEe---CCeEEEEEEEeCCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESY-----------------ISTIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
+|+++|+.++|||||+++|+........ ....+.+.. ...+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999864322110 011112222 222222 345688999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
..+.......+..+|++++|+|+.+..+... ..++..+. ..+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence 9888778888999999999999987655432 33333332 2358999999999975
No 229
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=123.07 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH 82 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d 82 (203)
-|.+||.||+|||||++++...+......+.++.......+... ....|.+-|+||.-+- ....-..++...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 47899999999999999999877665556666666666666653 2346889999993211 111233456788
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEE-eecCCCC
Q 028813 83 GIIIVYDVTDQE---SFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TSAKDST 156 (203)
Q Consensus 83 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~ 156 (203)
++++|+|++..+ ..+.......++..+.. ..+|.++|+||+|+....+......+.+....++..+. +|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998543 34555555555544422 36899999999997665544444445555555543222 9999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028813 157 NVEQAFMAMAASIKDRM 173 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~ 173 (203)
|++++...+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998775
No 230
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=1.6e-17 Score=123.93 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|++++|||||+++|+...- +.+.....+.+.....+.+.+ .++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999973110 112233344444455566655 789999999998888
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
..+...++.+|++|+|+|+.+...-.. ...+..+. ..++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~---~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD---RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCC
Confidence 888889999999999999987543222 22222232 33689999999999853
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=1.5e-17 Score=131.22 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=96.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
...++|+++|++++|||||+++|++... ..+...+.+ .......+.....++.++|+||+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T--~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGIT--INTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEe--EEccEEEEccCCeEEEEEECCChHH
Confidence 5679999999999999999999986311 111123333 3333333433446888999999988
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC-
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG- 144 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~- 144 (203)
|.......+..+|++++|+|+.....- ...+.+..+.. .++| +++++||+|+.+.... ...++..+....+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 866667778899999999999865321 22222333322 2577 7788999999653321 1123444444433
Q ss_pred ----CcEEEeecCCCCCH
Q 028813 145 ----IPFMETSAKDSTNV 158 (203)
Q Consensus 145 ----~~~~~~Sa~~~~~i 158 (203)
++++++|+++|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 68999999999754
No 232
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.6e-18 Score=112.60 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.=|++++|..|+|||||++.|...... .+.||.. .++..+.+.+ .+++.+|.+|+..-+..|+.++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999999876653 3333333 3344555666 788999999999989999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------------C---CcEE
Q 028813 87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--------------G---IPFM 148 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------------~---~~~~ 148 (203)
.+|+.|.+.+.+.+..+..+ ....-...|+++.+||+|..... +.++.+...... + +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999999988887766654 33333479999999999986543 444443322111 1 2478
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~ 168 (203)
.||...+.|..+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 99999999999999888654
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=1.6e-17 Score=120.27 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CC--------------CccccceeeeEEEEEEeC--------CeEEEEEEEeCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY--IE--------------SYISTIGVDFKIRTVEQD--------GKTIKLQIWDTA 65 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 65 (203)
+|+++|+.++|||||+.+|+.... .. +.....++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999985321 00 111112222222223333 336889999999
Q ss_pred CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
|+..|.......+..+|++++|+|+.++...+.... +......+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~----l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV----LRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH----HHHHHHcCCCEEEEEECCCcc
Confidence 999998888899999999999999998755433222 222223368999999999975
No 234
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=8e-18 Score=132.24 Aligned_cols=165 Identities=24% Similarity=0.346 Sum_probs=123.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.....+||+++|..|+||||||-.|+...++...++-... .....++....+..++.|++....-+.....-++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 3467899999999999999999999998887665543321 11113333333668899998766555555677899999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHH-HHHHHHHhC-C-cEEEeecCCCCC
Q 028813 84 IIIVYDVTDQESFNNVK-QWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYET-AKAFADEIG-I-PFMETSAKDSTN 157 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~ 157 (203)
+.++++++++.+++.+. .|+..++.... ...|+|+|+||.|.......+.+. ...++..+. + ..++|||++..+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999999999999985 59999977653 479999999999997665553333 444444444 3 589999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
+.++|..-.+.+.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999988665543
No 235
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.1e-16 Score=123.77 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=118.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+.+=|.++|+...|||||+.++-.........-..+..+....+..+. ....++|+|||||+.|..+...-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456789999999999999999998887666665555555555555541 2357899999999999998888888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST 156 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 156 (203)
||+++++.---+ ..+.+......+.|+++.+||+|..+.+ .+....-..+++ ..++++||++|.
T Consensus 84 LVVa~dDGv~pQ----TiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQ----TIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchh----HHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999864322 2233433444489999999999987433 233333333344 469999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASIKDR 172 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~ 172 (203)
|+++++..+.-....+
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999987655444
No 236
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=1.4e-16 Score=118.79 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CCC---------------cc---ccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY--IES---------------YI---STIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~--~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
-+|+++|++|+|||||+++|+...- ... +. ...+.++......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3699999999999999999984211 000 00 001222333333333344899999999998
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
+|.......++.+|++|+|+|+++.... ....++.... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 8877677778999999999999875332 2223333332 236899999999998554
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=1.4e-16 Score=125.23 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=95.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
....++|+++|+.++|||||+++|++... +.+.....+ .......+.....++.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGIT--INTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeE--EeeeEEEEcCCCeEEEEEECCCHH
Confidence 35789999999999999999999986311 111123333 333344444444688999999998
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccC---CHHHHHHHHHHh-
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETAKAFADEI- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~- 143 (203)
+|.......+..+|++++|+|+..+..- .....+..+.. .+.|.+ +++||+|+.+.... ...++..+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 8866666778899999999999875322 22233333332 257865 58999998643221 112333444333
Q ss_pred ----CCcEEEeecCCCC
Q 028813 144 ----GIPFMETSAKDST 156 (203)
Q Consensus 144 ----~~~~~~~Sa~~~~ 156 (203)
+++++++|++++.
T Consensus 163 ~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 163 FPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCccCCcEEEeeccccc
Confidence 3689999999975
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=5.2e-17 Score=127.98 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------------CccccceeeeEEEEEEeCCe
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVEQDGK 55 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (203)
++|+++|+.++|||||+.+|+...- .. +.....+.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 5899999999999999999974221 00 111122333333444444
Q ss_pred EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--
Q 028813 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY-- 133 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~-- 133 (203)
..++.++||||+..|.......+..+|++++|+|+..+..-+.. +.+..+.... ..++++++||+|+.+......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 36889999999998866666678899999999999865332221 2122222222 246888999999864322111
Q ss_pred --HHHHHHHHHhC---CcEEEeecCCCCCHHHH
Q 028813 134 --ETAKAFADEIG---IPFMETSAKDSTNVEQA 161 (203)
Q Consensus 134 --~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 161 (203)
+.+..+....+ ++++++||++|.|+.+.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22223333333 57999999999999863
No 239
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=1.3e-16 Score=126.56 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=98.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC------C----------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD------S----------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
...++|+++|+.++|||||+++|.+. . .+.+..+..+.+ .....+.....++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence 56799999999999999999999732 1 011222333434 33444444457889999999988
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCCH---HHHHHHHHHh--
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY---ETAKAFADEI-- 143 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~~---~~~~~~~~~~-- 143 (203)
|.......+..+|++++|+|+.+...-+ ..+.+..+.. .++| +++++||+|+.+...... .++.++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7665656667899999999998653211 1222333322 2578 578899999865332111 1222333322
Q ss_pred ---CCcEEEeecC---CCCC-------HHHHHHHHHHHH
Q 028813 144 ---GIPFMETSAK---DSTN-------VEQAFMAMAASI 169 (203)
Q Consensus 144 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 169 (203)
.++++++|+. ++.| +.++++.|.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3678888876 4544 556666655544
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=1.9e-16 Score=126.33 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=97.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS----------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
.+..++|+++|++++|||||+++|++.. ...+.....+.+.....+..+ ...+.++|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHH
Confidence 4568999999999999999999998521 011222333333333334333 4688999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHh-
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEI- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~- 143 (203)
.|.......+..+|++++|+|+.+....+. ++++..+... ++| +++++||+|+.+.... ..+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 987777777889999999999987543222 3333333332 577 7788999998653221 112344444443
Q ss_pred ----CCcEEEeecCCCCC
Q 028813 144 ----GIPFMETSAKDSTN 157 (203)
Q Consensus 144 ----~~~~~~~Sa~~~~~ 157 (203)
.++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999998854
No 241
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=1.9e-16 Score=118.59 Aligned_cols=144 Identities=19% Similarity=0.277 Sum_probs=93.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--- 73 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--- 73 (203)
..++|+++|.+|+|||||+|+|++..+... ..++.+.......+..++..+++.+|||||.......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998776433 2334444555556666777789999999994332110
Q ss_pred -----------------------hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 74 -----------------------TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 74 -----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
....+. .+|+++|+++.+... +.... ++.++.... ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 001222 477888888876421 11110 222333332 5899999999998653
Q ss_pred cc--CCHHHHHHHHHHhCCcEEEeecCC
Q 028813 129 KV--VSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
.+ .....+.+.+..+++++|......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22 234456677778899999876543
No 242
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=7.3e-17 Score=116.83 Aligned_cols=165 Identities=18% Similarity=0.313 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-----cchhhhccCCcE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-----TITSSYYRGAHG 83 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~d~ 83 (203)
||+++|+.+|||||+.+.+..+..+.+.. -..+.+.....+... ..+.+.+||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999988766543322 112233344444322 23689999999987543 345667899999
Q ss_pred EEEEEECCChhhHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--C----CHHHHHHHHHHhC---CcEEEee
Q 028813 84 IIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLLVGNKCDLTANKV--V----SYETAKAFADEIG---IPFMETS 151 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~S 151 (203)
+|||+|+.+.+..+.+ ...+..+.... ++..+.++++|+|+..+.. . ..+.+.+.....+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999854433333 33444444444 4688999999999865321 1 1122333333445 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813 152 AKDSTNVEQAFMAMAASIKDRMASQP 177 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~~~~~~~ 177 (203)
..+ ..+-++|..+++.+..+.+.-.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le 183 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLE 183 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence 998 5999999999999887666544
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=1.4e-16 Score=126.47 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=100.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|+.++|||||+.+|+...- +.+.....+++ .....+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEecC
Confidence 4568999999999999999999874110 11112222333 33333444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF-------NNVKQWLNEIDRYASDNVN-KLLVGNKCDLT 126 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~ 126 (203)
....+.++|+||+.+|.......+..+|++|+|+|+.+. .+ ....+.+..+.. .++| +++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 457899999999999988888889999999999999873 12 122333322222 2564 68889999975
Q ss_pred CCc--c----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHH
Q 028813 127 ANK--V----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQ 160 (203)
Q Consensus 127 ~~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 160 (203)
+.. . ...+++..++...+ ++++++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1 11344556666555 6799999999999864
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.72 E-value=1.7e-16 Score=126.15 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=97.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SY-----------------------------IESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|+.++|||||+.+|+.. .. ..+.....+.+..... +..
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--Ecc
Confidence 56789999999999999999998751 10 1111222333333333 344
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA 127 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~ 127 (203)
....+.|+|+||+.+|.......+..+|++++|+|+..+.- + ....+.+..+... ++| +++++||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 44789999999999998778778899999999999986520 0 1222222233222 555 678999999532
Q ss_pred --CccCC----HHHHHHHHHHh-----CCcEEEeecCCCCCHHH
Q 028813 128 --NKVVS----YETAKAFADEI-----GIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 128 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 160 (203)
..+.. .+++..+.... +++++++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 22333333333 36799999999999864
No 245
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.3e-16 Score=115.02 Aligned_cols=155 Identities=23% Similarity=0.189 Sum_probs=112.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-------ccccchhhhcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-------RFRTITSSYYR 79 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~ 79 (203)
---+++++|+|++|||||+++|++........+.++.+.....+.+++ .++++.|+||.- ..........+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 346899999999999999999999887666667777788888888888 889999999832 11234556789
Q ss_pred CCcEEEEEEECCChhh-HHHHHHHHHHHHh-----------------------------------------hc-------
Q 028813 80 GAHGIIIVYDVTDQES-FNNVKQWLNEIDR-----------------------------------------YA------- 110 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~-----------------------------------------~~------- 110 (203)
.||++++|+|+..... .+.+...+....- +.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986544 4444333222100 00
Q ss_pred -----------------CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 111 -----------------SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 111 -----------------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..-+|.+.|.||.|+... +....+.+.. ..+.+||..+.|++++.+.|.+.+.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 002677999999998652 3333333333 7899999999999999999998875
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=3.6e-16 Score=102.61 Aligned_cols=106 Identities=25% Similarity=0.228 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhcc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYYR 79 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 79 (203)
+|+|+|.+|+|||||+|+|++... .....+..+.......+..++ ..+.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998543 223333444444455666666 55679999995321 111223348
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK 122 (203)
.+|++++|+|+.++.. +.....+..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877422 22233334442 47899999998
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1.7e-16 Score=127.05 Aligned_cols=152 Identities=22% Similarity=0.230 Sum_probs=96.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------------CccccceeeeEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVEQ 52 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~ 52 (203)
+..++|+++|++++|||||+.+|+...- .. +.....+++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 5679999999999999999999985321 10 00111223333333333
Q ss_pred CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~ 132 (203)
...++.|+||||+..|.......+..+|++++|+|+..+..-.. .+.+..+.... ..|+++++||+|+.+.....
T Consensus 105 --~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 --EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred --CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 34688999999998886555556789999999999986532111 11112222222 24788999999986432211
Q ss_pred HHH----HHHHHHHh----CCcEEEeecCCCCCHHHHH
Q 028813 133 YET----AKAFADEI----GIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 133 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~~ 162 (203)
.+. +..+.... .++++++||++|.|+.++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222 22222232 3689999999999998754
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=7.6e-16 Score=124.37 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------CccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+.-+|+|+|++++|||||.++|+. +.... +.....++......+.+++ +.+.+||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 4566999999999999999999973 11100 0001112222233444444 8899999
Q ss_pred CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
|||+..|.......+..+|++|+|+|+.+.... ....++.... ..+.|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence 999998887777788999999999999875322 2233333332 24789999999999753
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=2.6e-16 Score=124.75 Aligned_cols=163 Identities=13% Similarity=0.173 Sum_probs=103.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEE---------------EeCC-------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTV---------------EQDG------------- 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------- 54 (203)
-..++|+++|+...|||||+.+|++... +.+.....+.+...... ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999997433 22222221111111000 0000
Q ss_pred ---eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 55 ---KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 55 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
-...+.|+|+||+..|.......+..+|++++|+|+.++.......+.+..+.... -.++++++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence 02468999999999887777777889999999999987421112223333332222 2468899999998653221
Q ss_pred --CHHHHHHHHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 132 --SYETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 132 --~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..+++.++... .+.+++++||++|.|++.+++.|.+.+.
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 12233333322 2578999999999999999999886553
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=9.5e-16 Score=114.88 Aligned_cols=148 Identities=19% Similarity=0.280 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC----c--------------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIES----Y--------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
+|+++|.+|+|||||+++|+....... . ....+.......+.+++ .++.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999975321100 0 01122223334455554 788999999998887
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEE--
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-- 149 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (203)
..+...+..+|++++|+|+++.........| ..+. ..+.|.++++||+|..... ..+....+....+.+++.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 7788889999999999999886554332222 2232 2368999999999986542 123344444455554433
Q ss_pred eecCCCCCHHHHHHHH
Q 028813 150 TSAKDSTNVEQAFMAM 165 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l 165 (203)
+...++.++..+.+.+
T Consensus 153 ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 153 LPIGEGDDFKGVVDLL 168 (268)
T ss_pred ecccCCCceeEEEEcc
Confidence 3445555554444443
No 251
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.1e-16 Score=119.28 Aligned_cols=179 Identities=19% Similarity=0.246 Sum_probs=113.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
+..++++++|+..+|||||+-+|+... ...+...+.+++.....+ ..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f--et 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF--ET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe--ec
Confidence 567999999999999999999987421 122233333444444444 44
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
..+.++|+|+||+..|......-..++|+.|||+|+.+.+ .+ .+.++.+-..+... -..+++++||+|..+-
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence 4478999999999999888888889999999999998763 11 11122222222222 2457888999999875
Q ss_pred ccCCHHHHHH----HHHHhC-----CcEEEeecCCCCCHHHHH---HH-----HHHHHHHHhccCCCCCCCCCCccccc
Q 028813 129 KVVSYETAKA----FADEIG-----IPFMETSAKDSTNVEQAF---MA-----MAASIKDRMASQPSMNNARPPTVQIK 190 (203)
Q Consensus 129 ~~~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~~i~~~~---~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (203)
++..++++.. +.+..| ++++++|+..|+|+.+.- .| |.+++. .-+.|......|..+++.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd--~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD--QLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh--ccCCCCCCCCCCeEeEee
Confidence 4444443322 333333 579999999999986643 22 334443 123333345555555554
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=7.2e-16 Score=117.11 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=97.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEE---------------------eCC-eEEEEEEEeCCCc-
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE---------------------QDG-KTIKLQIWDTAGQ- 67 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~- 67 (203)
|+++|.||+|||||+++|++........+..+.+....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998775433333333333322221 122 3367999999996
Q ss_pred ---cccccchhh---hccCCcEEEEEEECCC---------------hh-hHH----HHHHH-HHH---------------
Q 028813 68 ---ERFRTITSS---YYRGAHGIIIVYDVTD---------------QE-SFN----NVKQW-LNE--------------- 105 (203)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~~-s~~----~~~~~-~~~--------------- 105 (203)
++...+... .++.+|++++|+|+.. |. .++ ++..| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4899999999999963 11 111 11111 000
Q ss_pred -----------HH--------------h---------------------hcCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q 028813 106 -----------ID--------------R---------------------YASDNVNKLLVGNKCDLTANKVVSYETAKAF 139 (203)
Q Consensus 106 -----------i~--------------~---------------------~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 139 (203)
+. . .....+|+++++||.|+...... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 00 0 00124799999999997533221 1122
Q ss_pred HHHh-CCcEEEeecCCCCCHHHHHH-HHHHHHHHH
Q 028813 140 ADEI-GIPFMETSAKDSTNVEQAFM-AMAASIKDR 172 (203)
Q Consensus 140 ~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~ 172 (203)
.... ...++.+||+.+.++.++.+ .+.+.+.+.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 2233 45799999999999999997 688877543
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.69 E-value=2.1e-15 Score=107.99 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--cccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----c-------hh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----I-------TS 75 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~-------~~ 75 (203)
++|+++|.+|+|||||+|++++....... .+..+.........+.+ ..+.++||||...... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654333 22333344444445555 6889999999553321 0 11
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCccC------CHHHHHHHHHHhCCcE
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVV------SYETAKAFADEIGIPF 147 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 147 (203)
......|+++||+++.. .+-.. ...+..+...... -.++++++|+.|......+ ....++.+....+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 12467899999999886 22111 2223333322211 2478899999997654321 1133455555555556
Q ss_pred EEeec-----CCCCCHHHHHHHHHHHHHHHh
Q 028813 148 METSA-----KDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 148 ~~~Sa-----~~~~~i~~~~~~l~~~~~~~~ 173 (203)
+..+. ..+.++.++++.|.+.+.++.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 55554 457889999999888887643
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=4.5e-16 Score=129.12 Aligned_cols=151 Identities=23% Similarity=0.239 Sum_probs=95.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------ccccceeeeEEEEEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------------------------------YISTIGVDFKIRTVE 51 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 51 (203)
....++|+++|++++|||||+++|+...-.-. ...+.+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45678999999999999999999985321100 001122222223333
Q ss_pred eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
.+ ..++.|+||||+..+.......+..+|++++|+|+..+..-+. .+.+..+.... ..++++++||+|+.+....
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence 33 3678899999998876555566789999999999976532111 12222222221 2578889999998642221
Q ss_pred CHH----HHHHHHHHhC---CcEEEeecCCCCCHHH
Q 028813 132 SYE----TAKAFADEIG---IPFMETSAKDSTNVEQ 160 (203)
Q Consensus 132 ~~~----~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 160 (203)
..+ ++.++....+ ++++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 2223334444 4699999999999985
No 255
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.5e-15 Score=118.98 Aligned_cols=156 Identities=20% Similarity=0.140 Sum_probs=117.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++..-|.|+|+...|||||+.+|-+.........+.+..+....+..+ ..-+++|.||||+..|..+...-....|++|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 567789999999999999999999888766555555544444444444 2268999999999999999988888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST 156 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 156 (203)
+|+.+.|.-- .+..+.|......+.|+++.+||+|.++.+ .+....-...+| .+++++||++|.
T Consensus 230 LVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999988643 233344544455589999999999976433 333333333333 479999999999
Q ss_pred CHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASI 169 (203)
Q Consensus 157 ~i~~~~~~l~~~~ 169 (203)
|++.+-+.+.-+.
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145|consen 303 NLDLLEEAILLLA 315 (683)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999877544
No 256
>PRK13351 elongation factor G; Reviewed
Probab=99.69 E-value=9.7e-16 Score=128.36 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=82.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--------C-----C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--------E-----S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+...+|+|+|..++|||||+++|+...-. . . .....+.......+.+.+ ..+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 45679999999999999999999853210 0 0 011122223333444544 78999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
.++...+..+++.+|++++|+|+++.........| ..+. ..++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence 98888888899999999999999987665544333 2232 23689999999999864
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.9e-16 Score=113.64 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=109.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEE-EeCCeEEEEEEEeCCCccc-------cccchhhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQER-------FRTITSSY 77 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 77 (203)
...++|+++|.+|+|||||||+|+.+...+...-..+.+...... .+++ -.+.+||+||.++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 467999999999999999999999765543332222222222222 2233 4789999999543 66677888
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------cCCHHHHHHHHHH--------
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-------VVSYETAKAFADE-------- 142 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 142 (203)
+...|.+++++++.|++--.....|...+ ...- +.++++++|.+|...+- ......++++..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHH-Hhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999886433323333333 2222 37899999999975431 1111222222211
Q ss_pred h--CCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 143 I--GIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 143 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
. --|++.++.+.+.|++++...+++.+.....
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 1 1488999999999999999999998874433
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=2.4e-15 Score=125.78 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=83.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
++..+|+|+|++++|||||+++|+...- +.+.....+.+.....+.+++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 4678999999999999999999974211 011233445555556666665 78999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
..+...+...+..+|++|+|+|+.++...... ..+..+ ...++|.++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~---~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA---DKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECCCCCC
Confidence 88777788889999999999999876432222 222222 233689999999999864
No 259
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.3e-15 Score=119.22 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=119.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccccceeeeEEEEEE-eCCeEEEEEEEeCCCcc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY---------------IESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~ 68 (203)
.++.=++.|+.+...|||||..+|+...- .-+.+.+.++......+. .+++.+.+.++||||+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 35667899999999999999999974221 112233333333322222 23566899999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcE
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPF 147 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 147 (203)
+|......-+..+|++++|+|+++.-..+.+..++..++. +..+|.|+||+|++..+.. -..++.+++.....+.
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 9998888889999999999999988776666666655533 6788999999999765432 1223344444444689
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 028813 148 METSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 148 ~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
+.+||++|.|+.++++.|++.+..
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCC
Confidence 999999999999999999988753
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.6e-15 Score=117.49 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=112.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccc--------hhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI--------TSS 76 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~ 76 (203)
..++|+|+|+||+|||||+|+|...... .++.++++.+.-...++++| +.+.+.||+|..+ -... ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4589999999999999999999987654 45667777777788888888 8899999999654 1111 222
Q ss_pred hccCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-ccCCHHHHHHHHH-Hh-CC
Q 028813 77 YYRGAHGIIIVYDVTD--QESFNNVKQWLNEIDRYAS------DNVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EI-GI 145 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~------~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~ 145 (203)
-+..+|++++|+|+.. -.+...+...++....... ...|++++.||.|+... ..+...-...... .. ..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 4678999999999943 3333333333333321111 24789999999998654 2222211111111 11 23
Q ss_pred c-EEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 146 P-FMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 146 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+ +.++|+++++|++++...|.+.+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 4569999999999999999988876654
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=7.6e-15 Score=122.87 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=93.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+..-+|+|+|++++|||||+++|+...-. .+.....+.+.....+.+++ .++.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 45679999999999999999999742110 01122334444555666655 78999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-- 145 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 145 (203)
..+...+...+..+|++++|+|+.+....... .++..+. ..+.|+++++||+|+.... ......++...++.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN---RYEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA 159 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence 88877788889999999999999876543332 2222232 2368999999999987543 12233444444442
Q ss_pred --cEEEeecCCC
Q 028813 146 --PFMETSAKDS 155 (203)
Q Consensus 146 --~~~~~Sa~~~ 155 (203)
..+++|+..+
T Consensus 160 ~~~~ipis~~~~ 171 (689)
T TIGR00484 160 VPIQLPIGAEDN 171 (689)
T ss_pred eeEEeccccCCC
Confidence 2345555444
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=1.6e-15 Score=96.64 Aligned_cols=137 Identities=26% Similarity=0.291 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhccCCcEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGI 84 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~ 84 (203)
-||+++|..|+|||||.+.|.+.... +..|+..+ ++. =..+||||.- ++..........+|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FND----KGDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hcccceee-------ccC----ccccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 37999999999999999999986642 22333322 211 1245999843 2222233346889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 163 (203)
++|-+++++.+.-. ..+... ..+|+|-|++|.|+.++. ..+..+.|..+-|. ++|++|+.++.|++++++
T Consensus 69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 99999999865210 111111 245799999999997643 44667778888886 799999999999999999
Q ss_pred HHHH
Q 028813 164 AMAA 167 (203)
Q Consensus 164 ~l~~ 167 (203)
+|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8864
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2.3e-14 Score=112.02 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ---------------------D-GKTIKLQIWDTAG 66 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 66 (203)
++|+++|.||+|||||+++|++........+..+.+.......+ + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987765433344443333322221 1 1236789999999
Q ss_pred cc----ccccchhhh---ccCCcEEEEEEECC
Q 028813 67 QE----RFRTITSSY---YRGAHGIIIVYDVT 91 (203)
Q Consensus 67 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 91 (203)
.. ....+-..+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 222222233 78999999999996
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.63 E-value=1.1e-15 Score=106.32 Aligned_cols=117 Identities=26% Similarity=0.376 Sum_probs=71.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhh---ccCCcE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSY---YRGAHG 83 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~ 83 (203)
.-.|+++|+.|||||+|+..|..+......... +... .+.. ......+.++|+||+.+.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 356999999999999999999987543332222 1111 1222 2223468899999999887655544 778999
Q ss_pred EEEEEECCC-hhhHHHHHH-HHHHHH--hhcCCCCcEEEEEeCCCCCCC
Q 028813 84 IIIVYDVTD-QESFNNVKQ-WLNEID--RYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 84 ~i~v~d~~~-~~s~~~~~~-~~~~i~--~~~~~~~p~ilv~nK~D~~~~ 128 (203)
+|||+|.+. ...+..+.+ ++..+. .......|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999874 334444444 344332 223467999999999998654
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.61 E-value=6e-15 Score=114.52 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=122.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---------hh
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---------TS 75 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~ 75 (203)
.+..-.++++|-|++|||||++.+........+.++++......++++.- .+++++||||.-+.... +.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45667899999999999999999998888777777777777778877755 78889999995432111 11
Q ss_pred hhccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH---HHHHHHHhCCcEEEe
Q 028813 76 SYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET---AKAFADEIGIPFMET 150 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 150 (203)
...+--.+|+|+.|++... +...-.++++.|+.+.. +.|.|+|+||+|+.....+..+. +..+...-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 1223345799999998754 45555567777766655 58999999999998777665543 233334445899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
|..+.+|+-++....++.+..++
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHH
Confidence 99999999998888777665443
No 266
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=3.3e-14 Score=109.91 Aligned_cols=161 Identities=22% Similarity=0.248 Sum_probs=120.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCCccccceeeeEEEEEEe---CCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
++.-+..++.+-..|||||..+|+... ..-+.+.+.++......+.+ ++..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 455568889999999999999987422 11233344444444444433 447799999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-- 145 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 145 (203)
-.|.-....-+..+.+.++|+|+++.-..+.+...+..+.. +.-++-|+||+|++..+. ....+++..-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 98877777778888999999999998887888887777754 567899999999976542 2333445555665
Q ss_pred -cEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 146 -PFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 146 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
..+.+||++|.|++++++.|++.+..-
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCC
Confidence 478999999999999999999988644
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=1e-13 Score=111.76 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=71.9
Q ss_pred EEEEEEeCCCccc-----cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 57 IKLQIWDTAGQER-----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 57 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
.++.|+||||... ........+..+|+++||+|+....+... ....+.+.... ...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 3578999999643 22234446899999999999987433222 12233333321 12599999999998643333
Q ss_pred CHHHHHHHHH----HhC---CcEEEeecCCCCCHHHHHHHHHH
Q 028813 132 SYETAKAFAD----EIG---IPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 132 ~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
..+.+..+.. ..+ ..+|++||+.|.|++++++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444544432 112 36999999999999999999876
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=4.8e-14 Score=118.02 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=93.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--YI----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
.++..+|+|+|.+++|||||+++|+... .. .+.....+.+.....+.+.+ ..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 4567899999999999999999997311 10 01233344455555666665 7899999999
Q ss_pred ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-
Q 028813 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI- 145 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~- 145 (203)
+..+.......+..+|++++|+|+...-..+....| ..+. ..+.|.++++||+|+.+.. ......++...++.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN 158 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence 887766667778899999999998866433332222 2222 2368899999999987543 22333444444442
Q ss_pred ---cEEEeecCCC
Q 028813 146 ---PFMETSAKDS 155 (203)
Q Consensus 146 ---~~~~~Sa~~~ 155 (203)
..+++|+..+
T Consensus 159 ~~~~~ipisa~~~ 171 (693)
T PRK00007 159 PVPIQLPIGAEDD 171 (693)
T ss_pred eeeEEecCccCCc
Confidence 3455555554
No 269
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=2.4e-14 Score=115.77 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--C----------------ccccceeeeEEEEEEeCCeEEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE--S----------------YISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~--~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (203)
.+..+|+|+|++++|||||+++|+. +.... . .....+.++......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4667999999999999999999863 11100 0 00111233333333334344899999999
Q ss_pred CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
|+..|.......+..+|++|+|+|+.+... .....++.... ..+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH---hcCCCEEEEEECccccC
Confidence 998887767777899999999999987422 12233333332 23689999999999854
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=3.6e-14 Score=118.82 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=75.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchh
Q 028813 14 IGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS 75 (203)
Q Consensus 14 ~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 75 (203)
+|++++|||||+++|+...-. .+...+.+.......+.+.+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999642210 01112333444445555655 7899999999988777778
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
..+..+|++++|+|+++.........| ..+. ..+.|+++|+||+|...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence 888999999999999886554433222 2232 23689999999999853
No 271
>PTZ00258 GTP-binding protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=107.31 Aligned_cols=86 Identities=21% Similarity=0.199 Sum_probs=62.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc-
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER- 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~- 69 (203)
...++|+++|.||+|||||+|+|.+........|.++.+.....+.+.+.. .++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 567899999999999999999999877665555666666666666554322 3589999999432
Q ss_pred ------cccchhhhccCCcEEEEEEECC
Q 028813 70 ------FRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 70 ------~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112333467899999999973
No 272
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1e-13 Score=96.67 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc---CCcEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAHGII 85 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i 85 (203)
-.|+++|+.+||||+|+-.|..+..... -+.++.....+..+. -..+++|.||+.+.+.....++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 4699999999999999998887743222 123344455555555 34789999999988777767766 788999
Q ss_pred EEEECCC--hhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCcc------CCHHHHHHHHHH-------------
Q 028813 86 IVYDVTD--QESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLTANKV------VSYETAKAFADE------------- 142 (203)
Q Consensus 86 ~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~------------- 142 (203)
||+|... ++--+..+-++..+... .....|++++.||.|+.-... ..+.++..+...
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999652 22222233344444333 456789999999999853321 001111111000
Q ss_pred -------------------hCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 143 -------------------IGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 143 -------------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
..+.+.++|++.+ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1235778899988 899999998764
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=2.8e-13 Score=115.95 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=97.1
Q ss_pred CCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE----------------EEEEEEeCCCccccccchhhhccCCc
Q 028813 19 VGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT----------------IKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 19 sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++||||+.++.+.........+.+..+....+..+... -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999999988766555555544444444333110 13799999999999887777788899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-------------HHHHHHH-------
Q 028813 83 GIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-------------YETAKAF------- 139 (203)
Q Consensus 83 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~~~~~~~------- 139 (203)
++++|+|+++ +.+.+.+ ..+.. .+.|+++++||+|+....... .....++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 3333332 22322 268999999999985321100 0001111
Q ss_pred ---HHHh---------------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 140 ---ADEI---------------GIPFMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 140 ---~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
..++ .++++++||++|+|+++++.+|......
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 0111 3589999999999999999988765544
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=3.1e-13 Score=99.59 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=73.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--c-c-------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--T-I------- 73 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------- 73 (203)
....++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.+|||||..... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45779999999999999999999998765322 222223333333334444 678999999965431 0 0
Q ss_pred hhhhc--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028813 74 TSSYY--RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANK 129 (203)
Q Consensus 74 ~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~ 129 (203)
...++ ...|+++||..++... .... ...+..+...... -.++++|+||+|...+.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 11223 2578888887665432 1111 2233333332221 14689999999986543
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=6.1e-13 Score=99.65 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=73.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS 75 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 75 (203)
+....++|+++|.+|+||||++|++++..... +...+.+..........++ .++.++||||..+.... .+
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34578999999999999999999999876432 1222222222222333444 78999999996543211 11
Q ss_pred hhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCC
Q 028813 76 SYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 76 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~ 132 (203)
.++ ...|+++||..++.......-...+..+..... --.+.++++|+.|...++...
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 111 258999999665422111010122222322211 124689999999976544333
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=7.7e-13 Score=95.73 Aligned_cols=162 Identities=18% Similarity=0.220 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--ccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh----
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS---- 75 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~---- 75 (203)
++|+++|.+||||||++|.+++........ ...+..........++ ..+.++||||....... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432 2233344455556777 78899999994322111 11
Q ss_pred hhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-------HHHHHHHHHHhCCc
Q 028813 76 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIP 146 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 146 (203)
......++++||+.+. +.+.. .+.+++..+.... --..++||+|..|......+. ...++++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 1235689999999988 32222 2222333221110 013588889999876554311 12244555566667
Q ss_pred EEEeecC------CCCCHHHHHHHHHHHHHHHhc
Q 028813 147 FMETSAK------DSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 147 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~ 174 (203)
|..++.. ....+.+++..+-+.+.++..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 8877766 335688888888777776654
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.5e-13 Score=100.79 Aligned_cols=150 Identities=23% Similarity=0.261 Sum_probs=101.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCccccceeeeEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY---------------------------------IESYISTIGVDFKIRTVEQ 52 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 52 (203)
...++.+-+|+..-||||||-+|+.... ..+.+.+.+++....-+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4679999999999999999999975321 1112223344444444433
Q ss_pred CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~ 132 (203)
.+.+|.+-||||+++|-..+..-..-+|+.|+++|+...- +++.+. ...|..+.. -..+++.+||+|+.+..+..
T Consensus 84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence 3478999999999999777766677889999999996432 222222 112222222 25688899999998876544
Q ss_pred HHH----HHHHHHHhCC---cEEEeecCCCCCHHH
Q 028813 133 YET----AKAFADEIGI---PFMETSAKDSTNVEQ 160 (203)
Q Consensus 133 ~~~----~~~~~~~~~~---~~~~~Sa~~~~~i~~ 160 (203)
++. ...|+..+++ .++++||+.|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 443 3456666664 699999999999754
No 278
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.51 E-value=3.7e-13 Score=96.20 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=65.0
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
.+..++++.|..-...... .-+|.+|.|+|+.+.+.... .+..++ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4667788888422222121 12578999999987665321 111222 122388999999975323334444
Q ss_pred HHHHHH--hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 137 KAFADE--IGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 137 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
.+..+. .+.+++++|+++|.|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 347999999999999999999998654
No 279
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=3.8e-13 Score=103.91 Aligned_cols=160 Identities=15% Similarity=0.225 Sum_probs=108.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--CC------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDS--YI------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (203)
.-+|+|+.+...|||||+..|+... +. ...+.--++++-.+...+..+.+++.|.||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999998532 11 011122344455554444444589999999999999999
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHH-------hCC
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADE-------IGI 145 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~ 145 (203)
....+.-+|++++++|+.+..- .+..-.++.....+.+.|+|+||+|.+..+.. -.++...++.. +++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM----PQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM----PQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC----CchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987532 11122233333346677889999998765421 11223333333 357
Q ss_pred cEEEeecCCCC----------CHHHHHHHHHHHHHH
Q 028813 146 PFMETSAKDST----------NVEQAFMAMAASIKD 171 (203)
Q Consensus 146 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~ 171 (203)
|+++.|++.|. ++.-+|+.|++.+..
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 89999988774 577777777776653
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.50 E-value=1e-13 Score=102.21 Aligned_cols=96 Identities=24% Similarity=0.350 Sum_probs=77.1
Q ss_pred cccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 146 (203)
+++..+.+.++.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+......+..+.+ ..++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 566777778999999999999999887 89999999976643 4689999999999965444333334444 357889
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 028813 147 FMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 147 ~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
++++||++|.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998754
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.50 E-value=1.2e-12 Score=100.19 Aligned_cols=123 Identities=23% Similarity=0.256 Sum_probs=83.7
Q ss_pred EEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCcEE
Q 028813 49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVNKL 117 (203)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p~i 117 (203)
.+.+++ +.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+ ....-.+.|++
T Consensus 155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil 232 (317)
T cd00066 155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII 232 (317)
T ss_pred EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence 344443 7889999999999999999999999999999999874 2333333333333 22222578999
Q ss_pred EEEeCCCCCCCc----------------cCCHHHHHHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 118 LVGNKCDLTANK----------------VVSYETAKAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 118 lv~nK~D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
|++||.|+.... ....+....+... ..+....++|.+..++..+|+.+.+.+..
T Consensus 233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 999999963211 1122333222211 12456778899999999999998888875
Q ss_pred Hh
Q 028813 172 RM 173 (203)
Q Consensus 172 ~~ 173 (203)
..
T Consensus 313 ~~ 314 (317)
T cd00066 313 NN 314 (317)
T ss_pred HH
Confidence 43
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=1.1e-13 Score=116.19 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=79.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCC-Cccccceee--eEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YIE-SYISTIGVD--FKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
++..+|+++|+.++|||||+++|+... +.. +.....++. .....+..++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 466799999999999999999997421 100 001111211 11222334556689999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
..|.......+..+|++++|+|+.+....+....|.. + ...+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~---~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-A---LKENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-H---HHcCCCEEEEEEChhccc
Confidence 9887778888999999999999987533222222221 2 223578889999999853
No 283
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.50 E-value=8.8e-13 Score=97.73 Aligned_cols=163 Identities=15% Similarity=0.293 Sum_probs=116.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC--eEEEEEEEeCCCccccccchhhhccCC---
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRGA--- 81 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 81 (203)
.--+|+|+|..++||||||.+|.+.. ..-+..+.++....+.-+. .-.++.+|-..|+-.+..+.+..+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34579999999999999999999866 3344455555554443322 235678899988877766666655433
Q ss_pred -cEEEEEEECCChhh-HHHHHHHHHHHHhhcC------------------------------------------------
Q 028813 82 -HGIIIVYDVTDQES-FNNVKQWLNEIDRYAS------------------------------------------------ 111 (203)
Q Consensus 82 -d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 111 (203)
..+|++.|+++|.. ++.+..|.+.+..+..
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 37889999999954 4566667665432110
Q ss_pred -------------CCCcEEEEEeCCCCCC----Ccc-------CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 112 -------------DNVNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 112 -------------~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
-++|+++|++|+|... .-+ .....++.|+.++|..+|.+|+++..|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0589999999999731 111 1223457788899999999999999999999999999
Q ss_pred HHHHH
Q 028813 168 SIKDR 172 (203)
Q Consensus 168 ~~~~~ 172 (203)
.++..
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 88644
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.49 E-value=1.2e-12 Score=104.03 Aligned_cols=164 Identities=16% Similarity=0.296 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC--eEEEEEEEeCCCccccccchhhhccCC---
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRGA--- 81 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 81 (203)
..-.|+|+|..++|||||+.+|.+.. .+.++.+.++....+.-++ ...++.+|...|...+..+.+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 44689999999999999999997654 3345556666655544322 235789999998777777666655432
Q ss_pred -cEEEEEEECCChhhH-HHHHHHHHHHHhhcC------------------------------------------------
Q 028813 82 -HGIIIVYDVTDQESF-NNVKQWLNEIDRYAS------------------------------------------------ 111 (203)
Q Consensus 82 -d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------------------------ 111 (203)
-++|+|+|.+.|..+ +.+..|+..+..+..
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 268889999998764 344545444321000
Q ss_pred --------------CCCcEEEEEeCCCCCC----Ccc-------CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 112 --------------DNVNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 112 --------------~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
-++|++||++|+|... ... ....-++.++-.||+.+|++|++...+++-++.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0489999999999632 111 122335677888999999999999999999999999
Q ss_pred HHHHHHh
Q 028813 167 ASIKDRM 173 (203)
Q Consensus 167 ~~~~~~~ 173 (203)
+.++..-
T Consensus 261 h~l~~~~ 267 (472)
T PF05783_consen 261 HRLYGFP 267 (472)
T ss_pred HHhccCC
Confidence 9887553
No 285
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.6e-12 Score=97.13 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=99.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-------CCCCCccccceeeeEEEEEEe-------CCeEEEEEEEeCCCccccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD-------SYIESYISTIGVDFKIRTVEQ-------DGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~ 71 (203)
+..+++.++|...||||||.++|..- ..+++.....+.+..-..+.+ .+..+++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 34599999999999999999999731 223343443333333333332 4455789999999997764
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-------- 143 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------- 143 (203)
.....-.+-.|..++|+|+...-.-+..+-++ +.... -...++|+||.|...+.+ ....+.+.+.+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~q-r~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQ-RASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchh-hhhHHHHHHHHHHHHHHhcC
Confidence 44444456678999999987543222222211 22222 234688889999755432 112222222211
Q ss_pred ---CCcEEEeecCCC----CCHHHHHHHHHHHHHH
Q 028813 144 ---GIPFMETSAKDS----TNVEQAFMAMAASIKD 171 (203)
Q Consensus 144 ---~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~ 171 (203)
+.|++++|+..| +++.++.+.|...+.+
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 269999999999 6666666666665553
No 286
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.47 E-value=4.5e-13 Score=92.74 Aligned_cols=150 Identities=22% Similarity=0.194 Sum_probs=90.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEE---------------EEEE--------------------e
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI---------------RTVE--------------------Q 52 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~--------------------~ 52 (203)
.++|.|.|++|||||+|+.+++..-.......-.+.+++. ..+. .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999976422111100000001110 0000 0
Q ss_pred CCeEEEEEEEeCCCccccccchhhhccCCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
......+.|++..|. .- ...-+.-.| .-|+|+|++..+... ++-...+ -..-++|+||.|+......
T Consensus 93 ~~~~~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCc
Confidence 001145667777771 10 111122234 789999988765310 0000001 1234889999999887777
Q ss_pred CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 132 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 132 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
+.+...+-+++.+ ++++++|.++|+|++++++|+....
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 7777777776665 8999999999999999999987653
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.46 E-value=3.7e-13 Score=114.77 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=82.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeC--------------
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQD-------------- 53 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~-------------- 53 (203)
+.+..-+|+|+|+.++|||||+++|+...- +.+.....++......+.+.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 345678999999999999999999985331 01111122222222223331
Q ss_pred CeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
+..+.+.++||||+.+|.......+..+|++|+|+|+.++-.......|... ...++|.++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH----HHCCCCEEEEEECCccc
Confidence 2357889999999999988888888999999999999876543333333322 23368999999999986
No 288
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=4.3e-12 Score=97.49 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCcccc---
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERF--- 70 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~--- 70 (203)
++|+++|.||+|||||+|+|++........+.++.+.....+.+.+.. ..+.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877554555666656665555554422 25899999994321
Q ss_pred ----ccchhhhccCCcEEEEEEECC
Q 028813 71 ----RTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 71 ----~~~~~~~~~~~d~~i~v~d~~ 91 (203)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112223467899999999974
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.46 E-value=1.4e-12 Score=99.36 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~ 134 (203)
+++.|+||+|...-.. .....+|.++++.+...++.+..+.... + ...-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi--~------E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGI--M------ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhh--h------hhhheEEeehhcccchhHHHHHHH
Confidence 6789999999763322 2466799999998765565554433211 1 1223889999998653321 112
Q ss_pred HHHHHHHH-------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 135 TAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 135 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
++...... +..+++.+|++++.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 2258999999999999999999998766
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.46 E-value=8.1e-13 Score=101.50 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=80.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccc--eeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhh-----
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTI--GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY----- 77 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----- 77 (203)
...++|+|+|.+|+|||||||+|.+-.... ...++. .++.....+.... .-.+.+||.||.....-....|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 356899999999999999999997632211 111111 1111122222221 1258999999965433223333
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-------CCCccCCHH----HHHHHHHH----
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-------TANKVVSYE----TAKAFADE---- 142 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~-------~~~~~~~~~----~~~~~~~~---- 142 (203)
+..-|.+|++.+-.-...-- .....+.. .++|+++|-+|+|. ..++....+ .+++.+..
T Consensus 112 ~~~yD~fiii~s~rf~~ndv---~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTENDV---QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--HHHH---HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCchhhH---HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 45668888877643322211 12222322 37899999999996 112222222 22222221
Q ss_pred hCC---cEEEeecCCC--CCHHHHHHHHHHHHHHHhc
Q 028813 143 IGI---PFMETSAKDS--TNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 143 ~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~~ 174 (203)
.++ ++|-+|+++- .++..+.+.|.+.+...+.
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 233 6899998885 5688899999888876655
No 291
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.46 E-value=3.3e-12 Score=98.48 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=84.5
Q ss_pred EEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCc
Q 028813 47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVN 115 (203)
Q Consensus 47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p 115 (203)
...+.+++ ..+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....+..+ ....-.+.|
T Consensus 176 ~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p 253 (342)
T smart00275 176 ETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS 253 (342)
T ss_pred EEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc
Confidence 33444544 6789999999999999999999999999999999863 2344443333333 222235789
Q ss_pred EEEEEeCCCCCCCc---------------cCCHHHHHHHHH-----H------hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 116 KLLVGNKCDLTANK---------------VVSYETAKAFAD-----E------IGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 116 ~ilv~nK~D~~~~~---------------~~~~~~~~~~~~-----~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
++|++||.|+.... ....+....+.. . ..+..+.++|.+..++..+|+.+.+.+
T Consensus 254 iil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I 333 (342)
T smart00275 254 IILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII 333 (342)
T ss_pred EEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHH
Confidence 99999999974211 012222222221 1 124567788999999999999988887
Q ss_pred HHHh
Q 028813 170 KDRM 173 (203)
Q Consensus 170 ~~~~ 173 (203)
.+..
T Consensus 334 ~~~~ 337 (342)
T smart00275 334 LQRN 337 (342)
T ss_pred HHHH
Confidence 7543
No 292
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.3e-13 Score=99.80 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=108.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeee------------------EEEEEEeC------CeEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDF------------------KIRTVEQD------GKTIKL 59 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~~------~~~~~~ 59 (203)
..++|..+|....|||||.++|.+--. ..+.....++.. +...-.+. .-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 469999999999999999999986321 111111111100 00000011 112578
Q ss_pred EEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHH
Q 028813 60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAK 137 (203)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~ 137 (203)
.|.|.||++-.-....+-..-.|++++|++++.+..-.+..+.+-.+.-.. -+.++++=||+|+...+. ..+++++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHH
Confidence 999999998654444444555799999999997655444455554454433 245788899999976443 3456666
Q ss_pred HHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 138 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 138 ~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
+|.+.- +.|++++||.++.|++.+++.|.+.+..-
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 665432 57999999999999999999998887643
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.44 E-value=1.5e-12 Score=109.80 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=78.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccccceeeeEEEEE--EeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--E--------------SYISTIGVDFKIRTV--EQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~ 67 (203)
++.-+|+++|+.++|||||+.+|+...-. . +.....++......+ .+++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45668999999999999999999853211 0 001111222222222 23445688999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
..|.......+..+|++|+|+|+...-.......|.... . .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-R---ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-H---cCCCeEEEEECchhh
Confidence 988777888889999999999988754332222233222 1 246789999999975
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.44 E-value=6.6e-13 Score=113.07 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=79.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccccceeeeEEEEEEeC--------CeEEEEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI----------------ESYISTIGVDFKIRTVEQD--------GKTIKLQI 61 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i 61 (203)
+..-+|+|+|+.++|||||+++|+...-. .+.....++......+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 55669999999999999999999853210 0111112222222233332 22577999
Q ss_pred EeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
+||||+..|.......+..+|++|+|+|+.++-......-| ..+ ...+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~---~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQA---LQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHH---HHcCCCEEEEEEChhhh
Confidence 99999998877788888999999999999876443322222 222 23368999999999985
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.44 E-value=2.4e-12 Score=92.87 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=85.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------Cccc----cceeeeEEEEEE------------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--E----------SYIS----TIGVDFKIRTVE------------------ 51 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--~----------~~~~----~~~~~~~~~~~~------------------ 51 (203)
.....|+|+|+.|+|||||+++++..... . .... ..+.. ...+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence 35678999999999999999998753110 0 0000 00000 00000
Q ss_pred eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
.......+.++|+.|.-... ..+....+..+.++|+.+.+... ......+ +.|.++++||+|+.+....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~------~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYPGMF------KEADLIVINKADLAEAVGF 166 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhHhHH------hhCCEEEEEHHHccccchh
Confidence 00012467788888721111 11112345566788877654311 1111111 4678999999999653322
Q ss_pred CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHHHH
Q 028813 132 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 132 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
......+...+.+ ++++++|++++.|++++++++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2333444444433 899999999999999999999874
No 296
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.4e-12 Score=101.87 Aligned_cols=152 Identities=21% Similarity=0.259 Sum_probs=102.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-------------------------------CCCCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD-------------------------------SYIESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...+.++++|...+|||||+.+|+.. ....+...+.+++.....+. -
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe--s 252 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE--S 252 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--c
Confidence 36789999999999999999998642 01223334444444444444 4
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
....+++.|+||+..|-.....-...+|+.|+|+|++... .| .+.++....++.+. -..+++++||+|+.+=
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 4578999999999999888888888999999999987431 11 22233333344433 2457889999999765
Q ss_pred ccCCHHHHHH----HH-HHhC-----CcEEEeecCCCCCHHHH
Q 028813 129 KVVSYETAKA----FA-DEIG-----IPFMETSAKDSTNVEQA 161 (203)
Q Consensus 129 ~~~~~~~~~~----~~-~~~~-----~~~~~~Sa~~~~~i~~~ 161 (203)
.+..++++.. |. ...| +.+++||++.|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4444444432 22 2233 47999999999986543
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=3.4e-12 Score=93.15 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=80.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
....|+++|.+|+|||||++.+.+...........+. + .+ ......++.++|+||.- . ......+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEEEE
Confidence 4467999999999999999999864321111111110 1 11 11234678899999853 2 23334688999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCccCCH---HHHHH-HHHH--hCCcEEEeecCCCC
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY---ETAKA-FADE--IGIPFMETSAKDST 156 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~ 156 (203)
++|+........ ...+..+.. .+.|. ++|+||+|+.+...... ..++. +..+ .+.+++.+||+++-
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999976443222 222222322 25674 55999999864322111 12222 2211 23689999999873
No 298
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=2e-12 Score=95.91 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=69.6
Q ss_pred EEEEEeCCCcccc---ccchhhhcc---C--CcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 58 KLQIWDTAGQERF---RTITSSYYR---G--AHGIIIVYDVTDQESFNNV--KQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 58 ~~~i~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
++.+||+||..+. ...+..+++ . .+++++++|+......... ..|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997653 333333322 2 7899999999654332222 2222222222 23689999999999865
Q ss_pred CccCC--HHHHH------------------------HHHHHhC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 128 NKVVS--YETAK------------------------AFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 128 ~~~~~--~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
..+.. ...+. +.....+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 43210 00000 1112233 57899999999999999999988763
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.39 E-value=9e-13 Score=95.56 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=67.6
Q ss_pred EEEEEEeCCCccccc------cchhhhcc--CCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 57 IKLQIWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
+++.++||||+-+.. .++...+. .--++++++|... +.+| +..++=.-..+.....|.++++||.|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecccc
Confidence 467899999965321 11111111 2346788888543 3332 112111112233447999999999999
Q ss_pred CCCccC-----CHHHHHHHHH---------------------HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 126 TANKVV-----SYETAKAFAD---------------------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 126 ~~~~~~-----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
.+..-. .++..++-.. -.++..+.||+.+|.|++++|..+-..+.++..
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 764210 0111111000 014678999999999999999999888776654
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.38 E-value=6.6e-12 Score=93.47 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=58.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCcccc-----
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERF----- 70 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~----- 70 (203)
|+++|.||||||||+|+|++........+.++.+.....+.+.+.. ..+.++|+||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999987765555666666666666665432 25899999994321
Q ss_pred --ccchhhhccCCcEEEEEEECC
Q 028813 71 --RTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 71 --~~~~~~~~~~~d~~i~v~d~~ 91 (203)
.......++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111223457899999999863
No 301
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=2.8e-11 Score=95.92 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=115.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.+++.++|+.++|||.|++.|+++.+..+...+....+....+...+....+.+.|.+-. ...-....- ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 367899999999999999999999998887766666665666666666677677778787754 111111111 668999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 163 (203)
+++||.+++.+++.....++.-... ...|+++|++|+|+.+..+...-.-.+++..++++ .+..|.+.... .++|.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 9999999999998887766655433 47899999999999765432222227788889973 56667665333 88888
Q ss_pred HHHHHH
Q 028813 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
.|..+.
T Consensus 577 kL~~~A 582 (625)
T KOG1707|consen 577 KLATMA 582 (625)
T ss_pred HHHHhh
Confidence 877654
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.38 E-value=5.6e-13 Score=97.68 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=57.6
Q ss_pred EEEEEeCCCccccccchhhhc--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.+.++||||+-++...+.... ...-++++++|+..... ...+..++..+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 588999999887654443332 33457888999764322 122233333333222236899999999999762
Q ss_pred cc-------CC------------HHHHHHHHHH---hC-C-cEEEeecCCCCCHHHHHHHHHHHH
Q 028813 129 KV-------VS------------YETAKAFADE---IG-I-PFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 129 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
.. .. .....+++.- ++ . .++.+|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 00 0001111111 12 3 799999999999999999876543
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=6.3e-11 Score=91.44 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=90.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCcccc---ceeeeEE-----EEEEe-CCeEEEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD----SYI------------ESYIST---IGVDFKI-----RTVEQ-DGKTIKLQI 61 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~~-~~~~~~~~i 61 (203)
-.+-|+|+|+.++||||||++|.+. ... .+..++ ++++... ..+.. ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999876 221 111222 1111111 12222 344578899
Q ss_pred EeCCCccc--------ccc------c---------------hhhhcc-CCcEEEEEE-ECC----ChhhHHHH-HHHHHH
Q 028813 62 WDTAGQER--------FRT------I---------------TSSYYR-GAHGIIIVY-DVT----DQESFNNV-KQWLNE 105 (203)
Q Consensus 62 ~D~~g~~~--------~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~ 105 (203)
+||+|... -.. - ....+. .+|..|+|. |.+ .++.+... ..++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321 111 0 222234 789888888 764 11223222 345555
Q ss_pred HHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC--CCHHHHHHH
Q 028813 106 IDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS--TNVEQAFMA 164 (203)
Q Consensus 106 i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~ 164 (203)
++ ..++|+++++||.|-.... ..+...++..+++++++.+|+.+- ..+..+++.
T Consensus 176 Lk---~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 176 LK---ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HH---hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 54 3479999999999943222 234445667778999888887653 445555444
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.37 E-value=1.5e-11 Score=85.80 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=43.8
Q ss_pred EEEEEeCCCccc----cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813 58 KLQIWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123 (203)
Q Consensus 58 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 123 (203)
.+.|+|+||... ....+..++..+|++|+|.+++....-.....+.+..... ....++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 378999999643 3355777889999999999999866544445555444332 34488899984
No 305
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=1.7e-11 Score=81.07 Aligned_cols=114 Identities=30% Similarity=0.353 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
+|++++|..|+|||+|+.++....+...+. ++.+ +........+.++.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997666543332 2222 111223356778999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
++..+..+++.+ |...+........|.++++||.|+.+......+.. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999888665 77766555555688999999999844333332222 235567889998874
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.6e-12 Score=101.85 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=108.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC------------Ce----EEEEEEEeCCCcccc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD------------GK----TIKLQIWDTAGQERF 70 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~~~ 70 (203)
+..=++|+|+..+|||-|+..+.+.+.......+.+..+....+... ++ --.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45568999999999999999998866544433333322222222111 10 013688999999999
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------CCHHHHH
Q 028813 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-------------VSYETAK 137 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-------------~~~~~~~ 137 (203)
..+.......+|.+|+|+|+..+-..+. +..+..+...+.|+|+.+||+|..-... ...+...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 9999889999999999999976533222 2233334445789999999999742110 0011111
Q ss_pred HHHHHh----------C---------------CcEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 138 AFADEI----------G---------------IPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 138 ~~~~~~----------~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
+|..++ | +.++++||..|+||.+++.+|+++....+.+
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 111111 1 3578999999999999999999887666654
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.32 E-value=3.9e-11 Score=89.99 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=76.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--- 73 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--- 73 (203)
..++|+|+|.+|+|||||||.|++....... ..+.........+.-++..+.+.++||||.......
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999976543221 123334444455556777889999999993211000
Q ss_pred hh-----------h-------------hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 74 TS-----------S-------------YYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 74 ~~-----------~-------------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
|. . .=..+|+++|+++.+... .-..+ +.+..+ .. ..++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~-~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL---SK-RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH---TT-TSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh---cc-cccEEeEEecccccCH
Confidence 00 0 013578999999986532 11111 223333 22 4789999999998654
Q ss_pred ccC--CHHHHHHHHHHhCCcEEEeec
Q 028813 129 KVV--SYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.++ ....+..-...+++.+|....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 332 122334444567777776443
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.31 E-value=4.8e-11 Score=90.77 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=64.9
Q ss_pred EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH-
Q 028813 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE- 134 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~- 134 (203)
.+++.|+||+|.... .......+|.++++.+....+. +......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 367899999985422 2235667888888865443333 22222222 14678999999998654321100
Q ss_pred -----HHHHHHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 135 -----TAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 135 -----~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
....+... +..+++.+|++++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00111111 2246999999999999999999988754
No 309
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.30 E-value=4.2e-11 Score=88.23 Aligned_cols=157 Identities=22% Similarity=0.196 Sum_probs=95.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCccccce---------------eeeEEEEEE-------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-----------YIESYISTIG---------------VDFKIRTVE------- 51 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~------- 51 (203)
..+...|.|.|.||+|||||+..|...- .+++...+-+ ...+...+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 3456789999999999999999985311 0111111100 011111110
Q ss_pred -----------eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028813 52 -----------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120 (203)
Q Consensus 52 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 120 (203)
++...+++.|++|.|..+... ....-+|.++++.-..-.+.++.++.-+-++. -++|+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vI 196 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVI 196 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeE
Confidence 111225788999988654322 24556899999988777777777766554443 37899
Q ss_pred eCCCCCCCccCCHHHHHHH------HHHhC--CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 121 NKCDLTANKVVSYETAKAF------ADEIG--IPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 121 nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
||.|....+....+....+ ....+ .+++.+||.+|+|++++++.+.+...-.
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 9999644321111111111 11122 4899999999999999999988766433
No 310
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.7e-11 Score=92.06 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
-|+..|.-..|||||++++.+... +.......+.+........++ ..+.|+|.||+.++-.....-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999999997654 333344455555544444444 588999999999887767777788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH---HhCCcEEEeecCCCCCHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD---EIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
|+++++.-..+. .+.+..+..+.. ...++|+||+|..++..+ .+.++++.. ..++++|.+|+.+|+|++++.+
T Consensus 80 vV~~deGl~~qt-gEhL~iLdllgi--~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQT-GEHLLILDLLGI--KNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhh-HHHHHHHHhcCC--CceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999975433222 222333433321 345899999998765321 122222222 2246889999999999999999
Q ss_pred HHHHHHH
Q 028813 164 AMAASIK 170 (203)
Q Consensus 164 ~l~~~~~ 170 (203)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999885
No 311
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-10 Score=88.25 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=88.3
Q ss_pred eeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh-------HHHHHHHHHHHHhh----c
Q 028813 42 GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRY----A 110 (203)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~i~~~----~ 110 (203)
+..+....+.+.+ ..+.++|.+|+..-+.-|.+.+.+++++|||+++++-+. ...+.+-+..+... +
T Consensus 182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 3345556666666 788899999999888889999999999999999885432 23333333333322 3
Q ss_pred CCCCcEEEEEeCCCCCCCc--------------c-CCHHHHHHHH-----HHh-----CCcEEEeecCCCCCHHHHHHHH
Q 028813 111 SDNVNKLLVGNKCDLTANK--------------V-VSYETAKAFA-----DEI-----GIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 111 ~~~~p~ilv~nK~D~~~~~--------------~-~~~~~~~~~~-----~~~-----~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
-...+++|++||.|+.... . ...+....+. ..+ .+.+..+.|.+..+|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 3478999999999984321 0 1222222221 111 2456677899999999999999
Q ss_pred HHHHHHHh
Q 028813 166 AASIKDRM 173 (203)
Q Consensus 166 ~~~~~~~~ 173 (203)
.+.+....
T Consensus 340 ~d~Ii~~n 347 (354)
T KOG0082|consen 340 TDTIIQNN 347 (354)
T ss_pred HHHHHHHH
Confidence 99887654
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.7e-11 Score=98.42 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=86.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
++.-+|.|+|+..+|||||..+++...-. .+.....++.....++.+.+ ++.+.++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 46778999999999999999999742210 11112233333334444443 589999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
-+|.......++-.|++|+|+|+...-..+.-..|.+.. ..+.|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccccc
Confidence 999888888899999999999998865544444455444 337899999999998654
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.27 E-value=1e-10 Score=85.55 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=42.9
Q ss_pred EEEEEEeCCCcccc-------------ccchhhhcc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813 57 IKLQIWDTAGQERF-------------RTITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (203)
Q Consensus 57 ~~~~i~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK 122 (203)
..++++|+||.... ..+...+++ ..+++++|+|+...-.-....... +.+.+.+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia---~~ld~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA---KEVDPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH---HHHHHcCCcEEEEEEC
Confidence 46889999996421 223444566 446888999886532222222222 2333447899999999
Q ss_pred CCCCCC
Q 028813 123 CDLTAN 128 (203)
Q Consensus 123 ~D~~~~ 128 (203)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998654
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.26 E-value=4.8e-12 Score=91.82 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=87.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC------CC-----CCCcccc---------------ceeeeEEEEEEeCC-----
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD------SY-----IESYIST---------------IGVDFKIRTVEQDG----- 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~------~~-----~~~~~~~---------------~~~~~~~~~~~~~~----- 54 (203)
.+.+.|.|.|+||+|||||++.|... .. +++...+ .....+...+-..+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35689999999999999999998531 10 1111110 01112222221111
Q ss_pred -------------eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 028813 55 -------------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121 (203)
Q Consensus 55 -------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 121 (203)
..+++.|++|.|..+-. .....-+|.+++|....-.+.++.++.-+-++ .-++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 11568888998754332 22456699999999988777766665544444 2388999
Q ss_pred CCCCCCCccCCHHHHHHHHHH-------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 122 KCDLTANKVVSYETAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 122 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
|.|....+.. ..+++..... +..|++.+||.++.|++++++.|.+...
T Consensus 176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9995433221 1222222221 1248999999999999999999876443
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.26 E-value=3.1e-11 Score=89.93 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=39.7
Q ss_pred CcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 114 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 114 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
.+-++|+||+|+........+...+..+.. .++++.+|+++|+|++++.+||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 566999999999653222233333333333 4789999999999999999999764
No 316
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.26 E-value=2.5e-10 Score=92.84 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=72.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cc---h
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TI---T 74 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~ 74 (203)
+..++|+++|.+|+||||++|.+++....... ....+..........++ ..+.++||||..... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 56789999999999999999999987643322 11222222222233444 678999999965421 11 1
Q ss_pred hhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCC
Q 028813 75 SSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTAN 128 (203)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~ 128 (203)
..++. ..|+++||..++.......-..++..+...... -...|||+|+.|...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 11223 479999998876332211112334444333221 1347999999998753
No 317
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=5.7e-10 Score=80.29 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRG 80 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (203)
--+++++|.|++|||||+..+............++.+.....+.+++ ..+++.|.||.-.- ..+.....+-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 36899999999999999999987655444444556677778888888 67888899994321 2334455678
Q ss_pred CcEEEEEEECCChhhH-HHHHHHHHHH
Q 028813 81 AHGIIIVYDVTDQESF-NNVKQWLNEI 106 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~-~~~~~~~~~i 106 (203)
+|.++.|.|++..+.- +.++..++.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 9999999999865432 2334444444
No 318
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.3e-11 Score=87.38 Aligned_cols=147 Identities=22% Similarity=0.338 Sum_probs=91.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhccCC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYRGA 81 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 81 (203)
.-||+++|.+||||||+-..+...... ....++.++++.-.+..+-| ...+.+||++|++.+ .......+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999987766643321 22233444455544444432 257889999998843 33455678999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcc--CCHH----HHHHHHHHhCCcEEEeecC
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKV--VSYE----TAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~--~~~~----~~~~~~~~~~~~~~~~Sa~ 153 (203)
+++++|||+...+--..+..+...++... .+...+.+.++|+|+..... .... .+..+....++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999987765445544444443332 23466888899999965432 1112 2222233334567777665
Q ss_pred CC
Q 028813 154 DS 155 (203)
Q Consensus 154 ~~ 155 (203)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 43
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.7e-10 Score=85.91 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC----------------eEEEEEEEeCCCc----
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG----------------KTIKLQIWDTAGQ---- 67 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~---- 67 (203)
.+++.|||.||+|||||+|+++.........|..+++.......+.. ....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998776545556666665555443321 1246889999982
Q ss_pred ---cccccchhhhccCCcEEEEEEECC
Q 028813 68 ---ERFRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 68 ---~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
+......-.-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 233444555678999999999965
No 320
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.25 E-value=5.9e-11 Score=84.58 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=73.5
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhC
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG 144 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 144 (203)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 46667788999999999999987642 122222222 23589999999999865332 233333333 2233
Q ss_pred C---cEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCC
Q 028813 145 I---PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS 198 (203)
Q Consensus 145 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
. .++.+||+++.|+++++++|.+.+.. +..+.+.+.++.+||
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~------------~~~~~~~G~~nvGKS 141 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAKK------------GGDVYVVGATNVGKS 141 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhhc------------CCcEEEEcCCCCCHH
Confidence 3 68999999999999999999887741 223555566665554
No 321
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2e-10 Score=88.55 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=89.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCC--------------CCC----ccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSY--------------IES----YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~--~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
+.-..+|+-+|.+|||||-.+|+. +.. ..+ .+.--++.+.+..+.++.....+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 334578999999999999999862 110 000 011123344444444444448899999999
Q ss_pred ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc
Q 028813 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 146 (203)
++.|..-....+..+|..+.|+|+...-.- +.+..+.-....++|++=++||+|....+ ..+.+.++...+++.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~----qT~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i~ 164 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEP----QTLKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGIQ 164 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccH----HHHHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCcc
Confidence 999988788888899999999999865332 22233333344589999999999974433 345566666666543
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.22 E-value=2e-11 Score=90.64 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=100.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (203)
....-|.+||-.|+||||||++|+.........-..+.+.+.+....+.. ..+.+.||.|.-+ |.. .-.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 34457999999999999999999976554444434444444444443322 3677889999432 222 222
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN----KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
....+|.++.|.|++.|+.-++....+..++...-...| .+=|-||.|....... ...++ -+.+|+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--cccccc
Confidence 346789999999999987544444444444444322223 3445678876443211 11233 567899
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc
Q 028813 153 KDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
++|+|++++...+-..+..-..
T Consensus 324 ltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred ccCccHHHHHHHHHHHhhhhhe
Confidence 9999999999999888765544
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.1e-10 Score=83.38 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=96.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD----------------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
...++|..+|..+.|||||..++..- ..+.+. ..++++...++.++-.+..+...|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk--~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEK--ARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHh--hcCceeccceeEEecCCceEEeccCCChHH
Confidence 56799999999999999999887531 112222 235556666666655557888899999999
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhCC
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIGI 145 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 145 (203)
|-.....-..++|+.|+|+++.+..-.+. ++.+...+. -+.| +++++||+|+.++.++ -..+.+++...+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 87666666778899999999998543222 222222222 2566 6667799999875542 22345666777764
Q ss_pred -----cEEEeecCC
Q 028813 146 -----PFMETSAKD 154 (203)
Q Consensus 146 -----~~~~~Sa~~ 154 (203)
|++.-|++.
T Consensus 164 ~gd~~Pii~gSal~ 177 (394)
T COG0050 164 PGDDTPIIRGSALK 177 (394)
T ss_pred CCCCcceeechhhh
Confidence 677777765
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.18 E-value=7e-11 Score=81.50 Aligned_cols=94 Identities=21% Similarity=0.254 Sum_probs=64.0
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEe
Q 028813 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
+.++++...++|++++|+|+.++..... ..+...+ ...++|+++|+||+|+.+.... .....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV---LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH---HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 3456777888999999999987643221 1111112 2236899999999998543211 11222333456789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028813 151 SAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~ 170 (203)
|++++.|++++++.|.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999988775
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5e-10 Score=90.28 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=84.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------cceeeeEEEEEE---eCCeEEEEEEEeC
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-----------------TIGVDFKIRTVE---QDGKTIKLQIWDT 64 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~ 64 (203)
.+...+++++|+-++|||+|+..|.....+.-... ..++.....++. ..++.+-+.++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 46788999999999999999999986554332111 112222222222 3556778999999
Q ss_pred CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
||+-.|.......+..+|++++|+|+.+.-.+..-+ .++.......|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHH
Confidence 999999888888899999999999998876543322 233334457899999999996
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=99.11 E-value=3e-10 Score=87.67 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=66.2
Q ss_pred chhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
+.+..+.++|.+++|+|+.++. ....+..|+..+. ..++|+++|+||+|+...... ..........+++++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3444578999999999998775 4445566765552 236899999999999643221 222333346688999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~ 168 (203)
|+++.|+++++++|...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999998653
No 327
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.7e-10 Score=84.83 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=80.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEe------CCeE--------------------
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQ------DGKT-------------------- 56 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~-------------------- 56 (203)
..+...-|+++|.-+.||||||+.|+...++.... +-.+.+.....+.- ++..
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 34567789999999999999999999988764432 11122222222221 1110
Q ss_pred -------------EEEEEEeCCCccc-----------cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC
Q 028813 57 -------------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD 112 (203)
Q Consensus 57 -------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 112 (203)
-.++++||||.-+ |.....-|...+|.++++||+...+--.+....+..++.+
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--- 210 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--- 210 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---
Confidence 0478999999432 2333344678999999999987665545555555555433
Q ss_pred CCcEEEEEeCCCCCCCcc
Q 028813 113 NVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 113 ~~p~ilv~nK~D~~~~~~ 130 (203)
.-.+-+|+||+|..+..+
T Consensus 211 EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred cceeEEEeccccccCHHH
Confidence 345778899999876543
No 328
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.08 E-value=6e-10 Score=87.99 Aligned_cols=161 Identities=25% Similarity=0.377 Sum_probs=119.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.++|+.|||..++|||.|+.+++.+.+.+...+.. ..+.+++..+++..-+.+.|.+|.. ...|...+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 46899999999999999999999888765544433 3566777778888888889998832 3346677999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCC--CccCCHHHHHH-HHHHhCCcEEEeecCCCCCHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA--NKVVSYETAKA-FADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
||.+.+..+++.+..+...+.... ....|.++++++.-... .+.+..+...+ .++...+.+|+.++.+|.++...|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999999998887776664332 34677888887654322 23333344444 344556899999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028813 163 MAMAASIKDRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
..+..++...++
T Consensus 182 ~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 182 QEVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHHh
Confidence 999988765543
No 329
>PRK12288 GTPase RsgA; Reviewed
Probab=99.06 E-value=1e-09 Score=84.74 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=66.1
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4568999999999888888888888875542 36899999999999654321 1122223334567899999999999
Q ss_pred CHHHHHHHHHH
Q 028813 157 NVEQAFMAMAA 167 (203)
Q Consensus 157 ~i~~~~~~l~~ 167 (203)
|+++++++|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999999865
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.3e-09 Score=75.32 Aligned_cols=146 Identities=19% Similarity=0.281 Sum_probs=88.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---ccch
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE---------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---RTIT 74 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~~ 74 (203)
..++|+|||.+|.|||||+|+|....... ....|+.+......+.-++...+++++||||...+ ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 56899999999999999999998644322 12234444455566667777889999999994332 1111
Q ss_pred hh-----------hc--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 028813 75 SS-----------YY--------------RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA- 127 (203)
Q Consensus 75 ~~-----------~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~- 127 (203)
.- |+ ..+++++|.+..+.-. +..+ .+++..+... .-++-|+-|+|...
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~v----vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTEV----VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence 11 11 2467888888876422 1111 1222333222 34677788999643
Q ss_pred -CccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 128 -NKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
++....+.+++-...+++.+++--+.+-+.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccch
Confidence 233333445556667888888776665433
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.04 E-value=7.3e-09 Score=78.57 Aligned_cols=139 Identities=19% Similarity=0.345 Sum_probs=85.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-- 73 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-- 73 (203)
...+.|+++|+.|+|||||+|.|++...... ..++..+..+...+.-++-.+.+.++||||...+-..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999997643222 2244445556666666777889999999994322111
Q ss_pred -h-----------hhhc--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 74 -T-----------SSYY--------------RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 74 -~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
| ..++ ..+++++|++..+.- .+..+ ...+..+.. .+-+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 1 1111 347889999886532 22222 112222322 35577888999986
Q ss_pred CCccC--CHHHHHHHHHHhCCcEEE
Q 028813 127 ANKVV--SYETAKAFADEIGIPFME 149 (203)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~~~~ 149 (203)
..++. -.+.+.+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 54332 223345555666777774
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.8e-09 Score=84.90 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=88.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..+=++|+|+||+||||||+.|..+-...... ++......+.++..+++++++|.+ ... .....+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~-----~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTID-----EIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhh-----ccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence 456788899999999999999988643221111 111112234567789999999943 222 344567799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCCHHHHH-----HHHHHh-CCcEEEeecCCC
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSYETAK-----AFADEI-GIPFMETSAKDS 155 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~-----~~~~~~-~~~~~~~Sa~~~ 155 (203)
+++|.+-...++.+ ++++.+..+ +.| ++-|+|+.|+..........-+ .|..-+ |+.+|.+|...+
T Consensus 139 LlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 139 LLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred EEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 99999987766665 345555444 444 7888999999654432222222 222222 578888887664
No 333
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.02 E-value=1.2e-08 Score=80.60 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=80.0
Q ss_pred eeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh----------hHHHHHHHHHHH-Hhhc
Q 028813 43 VDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE----------SFNNVKQWLNEI-DRYA 110 (203)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i-~~~~ 110 (203)
..+....+.+ .+ ..+.++|++|+...+..|..++.+++++|||+++++-+ .+.+.......+ ....
T Consensus 223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 3344555666 55 78899999999988899999999999999999976422 122223333333 2223
Q ss_pred CCCCcEEEEEeCCCCCCC-----c-----------c--CCHHHHHHHHHHh------------CCcEEEeecCCCCCHHH
Q 028813 111 SDNVNKLLVGNKCDLTAN-----K-----------V--VSYETAKAFADEI------------GIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 111 ~~~~p~ilv~nK~D~~~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~ 160 (203)
-.+.|++|++||.|+... . . -..+....+.... .+.+..++|.+...+..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 347899999999996211 0 0 2233333333211 12456788888888888
Q ss_pred HHHHHHHHH
Q 028813 161 AFMAMAASI 169 (203)
Q Consensus 161 ~~~~l~~~~ 169 (203)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 888877643
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=2.4e-09 Score=80.95 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=67.3
Q ss_pred hhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813 75 SSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+... ......+....+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999887 77788888876643 3689999999999965421 112233334567899999999
Q ss_pred CCCCHHHHHHHHHH
Q 028813 154 DSTNVEQAFMAMAA 167 (203)
Q Consensus 154 ~~~~i~~~~~~l~~ 167 (203)
++.|+++++.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 335
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.7e-08 Score=77.02 Aligned_cols=145 Identities=18% Similarity=0.299 Sum_probs=87.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----- 71 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 71 (203)
-..+.++++|..|.|||||||.|+...+... ...+.....+...+..++-.++++++||||....-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3458999999999999999999987643221 22244445555556667778899999999933210
Q ss_pred --c-------chhhh-----------c--cCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 72 --T-------ITSSY-----------Y--RGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 72 --~-------~~~~~-----------~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
. ....+ + ..+++++|.+..+.- .+..+. ..+..+. ..+.+|-|+.|+|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCH
Confidence 0 01111 1 267899999986542 111111 1222222 24667888899998654
Q ss_pred ccC--CHHHHHHHHHHhCCcEEEeecCCC
Q 028813 129 KVV--SYETAKAFADEIGIPFMETSAKDS 155 (203)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.++ ....+.+....+++++|.......
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 432 223345555667788776655544
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.7e-09 Score=74.61 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred hccCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813 77 YYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
.+..+|++++|+|+.++.. ...+..++ ... ..++|+++|+||+|+.+.... ......+...+....+.+|++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999988632 22333333 222 335899999999999643221 1122222222223357899999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 155 STNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
+.|+++++++|.+.+.... ......+.+.+.++.+||+
T Consensus 80 ~~~~~~L~~~l~~~~~~~~-------~~~~~~v~~~G~~nvGKSt 117 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLHS-------DKKQISVGFIGYPNVGKSS 117 (157)
T ss_pred cccHHHHHHHHHHHHhhhc-------cccceEEEEEeCCCCChHH
Confidence 9999999999977654211 1123456677888877764
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.99 E-value=1.9e-09 Score=74.28 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=69.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+...... .+....+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754321 12221 1223346899999999998543211 11112232233456899999999999999
Q ss_pred HHHHHHHHHHHhccCC-CCCCCCCCcccccCCCCCCCCC
Q 028813 162 FMAMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
++.+.+...+...... .........+.+.+.++.+||.
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst 115 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS 115 (155)
T ss_pred HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence 9999876543221111 1113345667777888887763
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.98 E-value=2.6e-09 Score=83.28 Aligned_cols=95 Identities=26% Similarity=0.388 Sum_probs=68.7
Q ss_pred ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH----HHHHH
Q 028813 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADE 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~~ 142 (203)
.+.|..+...+...++++++|+|+.+... .|...+..... +.|+++|+||+|+.... ...+.+. +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 45677777888889999999999976542 34444444332 57999999999986532 2233333 33556
Q ss_pred hCC---cEEEeecCCCCCHHHHHHHHHHH
Q 028813 143 IGI---PFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 143 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998654
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.95 E-value=3.7e-09 Score=74.02 Aligned_cols=119 Identities=20% Similarity=0.121 Sum_probs=74.5
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.....+.++|++++|+|+.++..... ......+ .++|+++|+||+|+.+.... ....++....+..++.+|+
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa 83 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNA 83 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEEC
Confidence 34556789999999999987643211 1111111 24789999999998543211 1121222333456899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 153 KDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
+++.|++++.+.|...+............+....+-..+.++.+||.
T Consensus 84 ~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst 130 (171)
T cd01856 84 KSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST 130 (171)
T ss_pred CCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence 99999999999999887532222222233344566777777777653
No 340
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.95 E-value=1.8e-09 Score=78.73 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=91.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-cceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI 73 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 73 (203)
.+..++++++|.+|+|||||++-++.......... ..+.+.....+.+.. .+.+.|.||-. .+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45678999999999999999999987654332222 334344445555554 77888999911 22333
Q ss_pred hhhhccCC---cEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----CC------HHHHH
Q 028813 74 TSSYYRGA---HGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-----VS------YETAK 137 (203)
Q Consensus 74 ~~~~~~~~---d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----~~------~~~~~ 137 (203)
...++.+- -.+.+++|++-+- .-....+|+ ...++|..+|+||+|...... .. +..+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~------ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL------GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH------hhcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 33343222 2456667765432 111222333 444899999999999742211 11 11111
Q ss_pred HHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 138 AFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 138 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
........|.+.+|+.++.|++++.-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 111222356778999999999988766544
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.94 E-value=4.5e-09 Score=79.90 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=63.4
Q ss_pred hccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS 155 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.+.++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+... ............+++++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765443 4667665543 3689999999999963321 122234444566889999999999
Q ss_pred CCHHHHHHHHH
Q 028813 156 TNVEQAFMAMA 166 (203)
Q Consensus 156 ~~i~~~~~~l~ 166 (203)
.|++++++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998864
No 342
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.92 E-value=2.7e-08 Score=75.90 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=97.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------cccceeeeEEEEEEeCC----------------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------------ISTIGVDFKIRTVEQDG---------------- 54 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~---------------- 54 (203)
.+..+.+.+.|..++|||||.-.|..+..+... ....+-+.+...+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 457789999999999999999888754432211 11112222222222221
Q ss_pred -----eEEEEEEEeCCCccccccc--hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 55 -----KTIKLQIWDTAGQERFRTI--TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 55 -----~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
.+.-+.|.|+.|++.|... ...+-+..|..++++.+++.-+... ++.+- -......|+++++||+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLg---i~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLG---IALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhh---hhhhhcCCEEEEEEecccCc
Confidence 1124789999999987443 3334578899999999998755222 11111 11122689999999999865
Q ss_pred CccCC--HHHHH----------------------HHHHHhC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 128 NKVVS--YETAK----------------------AFADEIG---IPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 128 ~~~~~--~~~~~----------------------~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
++... .+++. ..+.+.+ .|+|.+|+.+|.|++-+.+.+..+-
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp 338 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP 338 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence 42110 01111 1111112 5899999999999987766655443
No 343
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.86 E-value=1.2e-08 Score=78.81 Aligned_cols=83 Identities=16% Similarity=0.038 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc---
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER--- 69 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~--- 69 (203)
++++|+|.|++|||||+++|++... .....+..+.+.....+.+.+.. ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 55544555555666666555422 3678999999432
Q ss_pred ----cccchhhhccCCcEEEEEEECC
Q 028813 70 ----FRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 70 ----~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678999999999974
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=7.8e-09 Score=70.06 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+++++|.+|+|||||+|+|.+........ ..+.+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999876542211 122233344455544 5789999995
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=5.5e-09 Score=78.27 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=64.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe---------------EEEEEEEeCCCcc--
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQE-- 68 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~-- 68 (203)
...+++.|||.|++|||||+|+|+.........|..+++.....+.+... ...++++|++|.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36789999999999999999999998887777777777777666655332 2468899999832
Q ss_pred -----ccccchhhhccCCcEEEEEEECC
Q 028813 69 -----RFRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 69 -----~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
......-+.++.+|+++.|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 22233444578899999998864
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.83 E-value=1.2e-08 Score=71.37 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..++++++|.||+|||||+|+|.+... .....++.+ .....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcC
Confidence 458999999999999999999998654 333334433 3333444433 578999998
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-07 Score=77.53 Aligned_cols=120 Identities=18% Similarity=0.294 Sum_probs=72.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cccee-----------------------------------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGV----------------------------------------- 43 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~----------------------------------------- 43 (203)
+...||+|.|..++||||++|+++.....++.. +++..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 567899999999999999999998654322211 11100
Q ss_pred -eeEEEEEEeCCe-----EEEEEEEeCCCcc---ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028813 44 -DFKIRTVEQDGK-----TIKLQIWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV 114 (203)
Q Consensus 44 -~~~~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 114 (203)
......+-++.. .-++.++|.||.+ ...+-...+...+|++|||.++.+..+..+ .+++.... ....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs---~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS---EEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh---ccCC
Confidence 000001111111 1256788999944 444446667889999999999877654332 23333332 2223
Q ss_pred cEEEEEeCCCCCCCc
Q 028813 115 NKLLVGNKCDLTANK 129 (203)
Q Consensus 115 p~ilv~nK~D~~~~~ 129 (203)
-++|+.||+|....+
T Consensus 263 niFIlnnkwDasase 277 (749)
T KOG0448|consen 263 NIFILNNKWDASASE 277 (749)
T ss_pred cEEEEechhhhhccc
Confidence 367777899986553
No 348
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.7e-08 Score=78.43 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=79.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-----CCCc-----------cccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-----IESY-----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.+.-+|.+...-.+||||+-++.+...- .... ....++++...-..+...++++.++||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3455788889999999999999774221 0000 01113333333333333458999999999998
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
|--.....++..|+.|+++++..+-.-+....|.+.-+ .++|.+.++||+|..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 87777778899999999999877655455555554332 278999999999974
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=3.2e-08 Score=74.56 Aligned_cols=118 Identities=24% Similarity=0.192 Sum_probs=76.0
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
....+..+|++++|+|+.++.+... ......+ .++|+++|+||+|+.+... .....+.....+.+++.+|++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence 4556789999999999987644211 1111111 2579999999999854321 111122223345678999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccC-CCCCCCCCCcccccCCCCCCCCC
Q 028813 154 DSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
++.|++++.+.|.+.+.+..... ..........+.+.+.|+.+||+
T Consensus 87 ~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs 133 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST 133 (276)
T ss_pred CcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence 99999999999988876543221 11123345667777888888764
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.80 E-value=2.2e-08 Score=69.10 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=37.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..++|+++|.||+|||||+|+|.+.... ....+..+ .....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999986542 23333332 2233333332 467899998
No 351
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.2e-08 Score=73.71 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=104.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc-------C---CC---C-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD-------D---SY---I-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~-------~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
...++|.-+|....|||||--++.. . .+ + .-.+..-++++...++.+.-....+.=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999988752 1 11 1 1112234666777777776666677778999999987
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC---CHHHHHHHHHHhC----
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAKAFADEIG---- 144 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 144 (203)
.....-..+.|+.|+|+.++|..- .+.++.+...+...- ..+++++||.|+.++.+. -+-+++++..+++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 666666678899999999998643 222333333333321 247788899999855432 2234566666665
Q ss_pred -CcEEEeecC---CCCCHH---HHHHHHHHHHHHHh
Q 028813 145 -IPFMETSAK---DSTNVE---QAFMAMAASIKDRM 173 (203)
Q Consensus 145 -~~~~~~Sa~---~~~~i~---~~~~~l~~~~~~~~ 173 (203)
+|++.-||+ .+.+-+ +.+..|++.+-.+.
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 578876654 453322 23344445544443
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=2.8e-08 Score=75.29 Aligned_cols=118 Identities=24% Similarity=0.251 Sum_probs=77.2
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
....+..+|++++|+|+.++.+... .++... .. ++|+++|+||+|+.+... ......+....+.+++.+|++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~ 89 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK 89 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence 4455788999999999987644211 111111 11 579999999999854311 112222233446788999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccC-CCCCCCCCCcccccCCCCCCCCC
Q 028813 154 DSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
++.|++++.+.+.+.+.+..... ..........+.+.+.|+.+||+
T Consensus 90 ~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs 136 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST 136 (287)
T ss_pred CcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence 99999999999988876543221 11223445678888888888764
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.4e-08 Score=81.80 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY--------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
+....-+++++.+...|||||+..|+..+- ..+.+.+.+++-....+..-.+++.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 345667899999999999999999975321 112223334444444444444568999999999999
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
|.+.......-+|++++++|+..+-..+.... ++..+..+...++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhhh
Confidence 99999998999999999999987654333322 33333335667889999993
No 354
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.76 E-value=1e-07 Score=72.70 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------C--ccccceeeeEEEEEE-----------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------S--YISTIGVDFKIRTVE----------------- 51 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~--~~~~~~~~~~~~~~~----------------- 51 (203)
.+++++++|...+|||||+-.|.++.+.. + .....+.++ .-++
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDI--LGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDI--LGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccc--eeeccccccccCCCCCCCccc
Confidence 56899999999999999997766443211 1 111111111 1111
Q ss_pred ----eCCeEEEEEEEeCCCccccccchh--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 52 ----QDGKTIKLQIWDTAGQERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 52 ----~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
+.+...-++|+|.+|++.|..... ..-+-.|..++++-++-.-- .-..+.+... ..-..|+++|++|+|.
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLA---LaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLA---LALHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhh---hhhcCcEEEEEEeecc
Confidence 112223578999999998855432 22345677888887664311 1111111111 1126899999999998
Q ss_pred CCCccCCHHHHHHHHHH-----------------------------hCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 126 TANKVVSYETAKAFADE-----------------------------IGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
...+.+ .+..+.+.+. .-||+|.+|..+|.++.-+... .+.+.-+++
T Consensus 286 CPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls~R~~ 361 (641)
T KOG0463|consen 286 CPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLSLRRQ 361 (641)
T ss_pred CcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcCcccc
Confidence 655422 2222222211 1368999999999998766554 444444433
No 355
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.3e-08 Score=73.75 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------------cc-------ceeeeEEEEEEeCC---------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYI----------------ST-------IGVDFKIRTVEQDG--------- 54 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~--------- 54 (203)
-.++++++|...+|||||+-.|....++.... .+ .+.+.....+.+..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 57899999999999999998776543321110 01 11111111111111
Q ss_pred -eEEEEEEEeCCCccccccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 55 -KTIKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 55 -~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
...-++++|.+|+.+|......-+. -.|..+++++++..-.+.. ++.+-.+..+ +.|++++++|+|+.....+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 1124789999999988666544443 3578899999887654433 2222222222 6899999999999654211
Q ss_pred ------------------------CHHHHHHHHHH----hCCcEEEeecCCCCCHHHHHHHH
Q 028813 132 ------------------------SYETAKAFADE----IGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 132 ------------------------~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
..++...-+++ +-.|+|.+|+..|+|++-+...|
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11111111111 12489999999999987665554
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=3.7e-08 Score=66.75 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=52.0
Q ss_pred hhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
...+..+|++++|+|+.++.+.. .+..++... . .++|+++|+||+|+.+... .....++....+..++.+|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34578899999999998876432 334444322 1 3689999999999854332 22334445556678999999
Q ss_pred CCCCC
Q 028813 153 KDSTN 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.70 E-value=2.4e-07 Score=82.30 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=70.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc------cccceeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhh
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESY------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSS 76 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 76 (203)
.+|+|++|+||||+++.- +-.++-.. ..+.+.+.. -.+.+.+ +-.++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999876 33332211 111111111 1222333 44688999932 11233555
Q ss_pred hc---------cCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 77 YY---------RGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 77 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
++ +..|++|+++|+.+. .. ...++..++++........|+++++||+|+....
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence 44 358999999997642 11 2345556667777777789999999999987553
No 358
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.7e-07 Score=66.42 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE--EEeCCeEEEEEEEeCCCccccccc---hhhhccCCc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT--VEQDGKTIKLQIWDTAGQERFRTI---TSSYYRGAH 82 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d 82 (203)
..+|+++|...+||||+.+.......|.+ |.-.+.+.+. -.+.+.-+.+.+||.||+-.+..- ....++.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 36699999999999998876655432222 1111111110 011223367899999997544221 334578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-------Hh-----CCcEE
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-------EI-----GIPFM 148 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-------~~-----~~~~~ 148 (203)
++|||+|+.+. ..+.+..+...+.+.. ..++.+=+++.|.|...++- ..+..+.+.+ .. .+.++
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~vsf~ 181 (347)
T KOG3887|consen 104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQVSFY 181 (347)
T ss_pred eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence 99999998653 3344444333333322 24566788899999754321 1111111111 11 23466
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
-+|-. .-.+-|+|..+.+++..+.+
T Consensus 182 LTSIy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 182 LTSIY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred Eeeec-chHHHHHHHHHHHHHhhhch
Confidence 66655 45899999999888776544
No 359
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.70 E-value=1.9e-06 Score=67.05 Aligned_cols=152 Identities=15% Similarity=0.229 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC-----------------CCCCCccccceeeeE-------EEEEEe-CCeEEEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD-----------------SYIESYISTIGVDFK-------IRTVEQ-DGKTIKLQIW 62 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~-----------------~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~ 62 (203)
.+=|.||||..+||||||++|... .+|++....+-++.. ...+.. ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 466899999999999999998531 122222211111111 112333 4567889999
Q ss_pred eCCCc-------------ccc-ccchhhh---------------c--cCCcEEEEEEECCC----hhhHHHHHH-HHHHH
Q 028813 63 DTAGQ-------------ERF-RTITSSY---------------Y--RGAHGIIIVYDVTD----QESFNNVKQ-WLNEI 106 (203)
Q Consensus 63 D~~g~-------------~~~-~~~~~~~---------------~--~~~d~~i~v~d~~~----~~s~~~~~~-~~~~i 106 (203)
|+.|. .++ .+-|-.. + +.-=++++.-|.+- ++.+..+++ .++++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99871 011 1111110 0 11225666666442 344444433 44444
Q ss_pred HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC--CCHHHHHHH
Q 028813 107 DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS--TNVEQAFMA 164 (203)
Q Consensus 107 ~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~ 164 (203)
+ .-++|+++++|-.+-... ...+...++..+|+++++.+++.+- ..+..+++.
T Consensus 177 k---~igKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 177 K---EIGKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred H---HhCCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 4 348999999998874322 2345567788899999999887653 344444433
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=6.4e-08 Score=72.92 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=40.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
...++++++|.||+|||||+|+|.+.... ....++.+ .....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999976532 23333333 3334444443 5789999996
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.69 E-value=8.7e-08 Score=72.59 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=41.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
...++++++|.||+|||||+|+|.+... .....++.+ .....+..+. .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT--KAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE--EEEEEEEeCC---cEEEEECCCcC
Confidence 3568999999999999999999998664 333344433 3334444443 57899999963
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=6.9e-08 Score=67.61 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=39.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+..++++++|.+|+|||||+++|.+..... ...+.+ +.....+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGV--TKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCE--EeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999876532 222332 3333434443 35789999994
No 363
>PRK13796 GTPase YqeH; Provisional
Probab=98.68 E-value=1e-07 Score=74.56 Aligned_cols=93 Identities=25% Similarity=0.379 Sum_probs=60.7
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH----HHHHhC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~~~~ 144 (203)
.+...........+.+++|+|+.+.. ..|...+..... +.|+++|+||+|+... ....+.+.. ++..++
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 44443333333334899999998743 234444544333 5789999999999643 222333333 344556
Q ss_pred C---cEEEeecCCCCCHHHHHHHHHHH
Q 028813 145 I---PFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 145 ~---~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+ .++.+||+++.|++++++.|.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5 58999999999999999998764
No 364
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.66 E-value=5.7e-08 Score=74.56 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=43.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
..++++|+|-||+|||||||+|.+.... ....| +.+.....+..+. .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCcC
Confidence 4588999999999999999999987762 22333 5555666666665 48899999954
No 365
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.66 E-value=5.5e-08 Score=69.27 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=37.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSY---------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..+++++|.+|+|||||+|+|.+... ..+..++ ++.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence 36899999999999999999997542 2223333 334444444443 568999999
No 366
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.9e-08 Score=74.51 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=99.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEE---EEEEe----------------------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKI---RTVEQ---------------------------- 52 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~---~~~~~---------------------------- 52 (203)
-.++|.-+|....||||+.+++.+-. +..+.+...++.... +.+.+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 46899999999999999999986532 111111111110000 00000
Q ss_pred -CC---eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 53 -DG---KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 53 -~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.+ --..+.|.|+||++-.-.....-..-.|++++++..+....-.+..+.+..++... -+.++++-||+|+..+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKE 194 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhH
Confidence 10 01357899999988554433333344688888888775332222222233332222 2467888999999765
Q ss_pred ccC--CHHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 129 KVV--SYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 129 ~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.+. ..+++..|...- ++|++++||.-+.|++-+.++|.+++..-
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 432 334455554432 57999999999999999999999887643
No 367
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.64 E-value=7.8e-07 Score=64.70 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 81 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 81 (203)
-++.++|.|++||||++..|.+...+......++.........+.+ -++.+.|.||.-+ ...+.....+-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3799999999999999999998664433333333333344444555 5788899998321 223344456778
Q ss_pred cEEEEEEECCChhhHHHH
Q 028813 82 HGIIIVYDVTDQESFNNV 99 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~ 99 (203)
+.+++|.|+..|-+-..+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998877654444
No 368
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.4e-07 Score=65.02 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=38.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
...+++++|.+++|||||+++|.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999975532 2223333333333333333 688999998
No 369
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.3e-08 Score=76.21 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=92.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--------CCC----------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYI----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
.+.-+|.++....+||||.-.+++.. ... .+... ++++.+.-+.++.+..++.++||||+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erer--gitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERER--GITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhc--CceeeeeeeecccccceEeeecCCCc
Confidence 34567999999999999999998641 111 11222 34445544444445589999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 145 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 145 (203)
-.|.-.....++-.|+++.|||++-.-..+.+..|.+.- ..++|.+.++||+|...... .........+.++
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk~~anf--e~avdsi~ekl~a 184 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGA 184 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCC
Confidence 999888888999999999999998776666666676543 23688899999999754321 1223444556665
No 370
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=3.4e-06 Score=57.13 Aligned_cols=148 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCC-Ccc--------------cc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-GQE--------------RF 70 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~--------------~~ 70 (203)
...+||++.|+||+||||++.++...-....+ .- ..+....+.-++...-|.+.|+. |.. .|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 35689999999999999999988743221111 11 23556666677777778888876 311 11
Q ss_pred -------c----cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q 028813 71 -------R----TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF 139 (203)
Q Consensus 71 -------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 139 (203)
. ......++.+|++| +|--.+-.+ ....+...+......++|++.++.+.+. + ..++++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr-~------P~v~~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR-H------PLVQRI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC-C------hHHHHh
Confidence 0 00122234456554 442222111 1134555566666668898888877653 1 112233
Q ss_pred HHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 140 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 140 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
- +.+..++. .+..|-+++++.+...+.
T Consensus 150 k-~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 150 K-KLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred h-hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 2 23333332 555666688888777664
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.60 E-value=6.1e-07 Score=68.71 Aligned_cols=95 Identities=24% Similarity=0.237 Sum_probs=56.9
Q ss_pred EEEEEEEeCCCccccccc----hhhh--------ccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813 56 TIKLQIWDTAGQERFRTI----TSSY--------YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK 122 (203)
.+++.++||||....... ...+ -...+..++|+|++... .+..+..+. .. -.+.-+|+||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~---~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EA---VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hh---CCCCEEEEEC
Confidence 367899999996543221 1111 12356789999998543 222222211 11 1244678999
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
.|.... .-.+.......++|+..++ +|++++++..
T Consensus 269 lD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 995432 2334555667799999887 7888876643
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.59 E-value=4.3e-08 Score=67.12 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
-.++++|++|||||||+|.|.+.... .....+..++....-+..++ ...++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 35899999999999999999986321 11112222222333444433 3467899996654
No 373
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.59 E-value=3.8e-07 Score=66.35 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=56.3
Q ss_pred eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhh----cCCC
Q 028813 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEIDRY----ASDN 113 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~----~~~~ 113 (203)
+....+.++. +.|+.+|.+|+..-+..|...+..+.++|||+..+.-+ +-..+++-+..++.. +-..
T Consensus 192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 4444455554 77999999999988888999999999999999876421 223333333333332 2235
Q ss_pred CcEEEEEeCCCCC
Q 028813 114 VNKLLVGNKCDLT 126 (203)
Q Consensus 114 ~p~ilv~nK~D~~ 126 (203)
+.+|+++||.|+.
T Consensus 270 isvIlFLNKqDll 282 (379)
T KOG0099|consen 270 ISVILFLNKQDLL 282 (379)
T ss_pred hheeEEecHHHHH
Confidence 7799999999974
No 374
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=1.9e-07 Score=64.25 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
....+++++|.+|+|||||+|+|.+... .....+.++.... .+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 3567899999999999999999998653 2233333333322 23333 3578999998
No 375
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.57 E-value=2.2e-06 Score=62.63 Aligned_cols=88 Identities=17% Similarity=0.032 Sum_probs=52.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccc-cceeeeEEEEEEeC-CeEEEEEEEeCCCcccccc------chh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYIS-TIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRT------ITS 75 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~ 75 (203)
....-|.|+|++++|||+|+|.|++. .+...... ..+..+........ +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 35567999999999999999999987 54322221 11111111111111 1346899999999654322 112
Q ss_pred hhcc--CCcEEEEEEECCCh
Q 028813 76 SYYR--GAHGIIIVYDVTDQ 93 (203)
Q Consensus 76 ~~~~--~~d~~i~v~d~~~~ 93 (203)
..+. -++++||..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 2222 37888888776643
No 376
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.55 E-value=1.8e-07 Score=66.91 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=75.0
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCC
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~ 125 (203)
.-+.+.|.+|+..-+..|.+.+.++-.++|++.++.- ..+++...+...+ ..-+..+.++|+++||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 5567889999888888899999998888887776532 2223322222222 2223357899999999998
Q ss_pred CCCc----------------cCCHHHHHHHHHHh----C------CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 126 TANK----------------VVSYETAKAFADEI----G------IPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 126 ~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.++. ....+..++|...+ + +.-..+.|.+.+|+.-+|..+.+.+.+.
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 6442 12233334443222 1 2234566788899999999999887654
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.54 E-value=5e-07 Score=70.42 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=59.4
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDS 155 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 155 (203)
+..++|.+++|+++..+.....+..++..+... +.+.++|+||+|+.+... +....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 357899999999997544555566666555433 567789999999965421 12222222 34678999999999
Q ss_pred CCHHHHHHHHH
Q 028813 156 TNVEQAFMAMA 166 (203)
Q Consensus 156 ~~i~~~~~~l~ 166 (203)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999998874
No 378
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.8e-06 Score=62.54 Aligned_cols=164 Identities=21% Similarity=0.294 Sum_probs=100.7
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 9 FKLLLIGDSGV--GKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 9 ~~i~v~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
.-++|+|.+|+ ||-+++.+|....+..+......++++..++........+.+.-.+--+.+.-......+...+++.
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 46789999998 9999999999888766655554444444444322212222222222211111112223345678999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--------------------------------------
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-------------------------------------- 128 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~-------------------------------------- 128 (203)
+||.+....+..+..|+........ -..+.++||.|....
T Consensus 85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 9999999999999999874421111 124566799986421
Q ss_pred ---c---cCCHHHHHHHHHHhCCcEEEeecCC------------CCCHHHHHHHHHHHHHHHhc
Q 028813 129 ---K---VVSYETAKAFADEIGIPFMETSAKD------------STNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 129 ---~---~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~~~~~~~ 174 (203)
. ........+|+.++++.+++.++-+ ..|+.++|..|...+...+-
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 0 0111234678888999999888732 24788888888776655544
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.50 E-value=3.3e-07 Score=70.98 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=35.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-Ccc-----ccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIE-SYI-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
++|+|.+|+|||||||+|++..... ... .+..++....-+..++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 6899999999999999999754321 111 11122233333444321 2488999976543
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.48 E-value=1.1e-06 Score=67.73 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=56.4
Q ss_pred EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
+++.++||+|....... ...+. -..|.+++|+|+..... ...+..+...+ ..--+++||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCCc
Confidence 56899999996543221 11121 24688899999876432 22222222111 2346778999974322
Q ss_pred cCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
-.+...+...+.|+..++ +|++++++..+
T Consensus 296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 223445556789988887 78888776543
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.46 E-value=1.2e-06 Score=65.78 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=57.0
Q ss_pred EEEEEEEeCCCccccccchh----h---h-----ccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813 56 TIKLQIWDTAGQERFRTITS----S---Y-----YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~----~---~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK 122 (203)
.+++.++||+|......... . . -...|.+++|+|++... .+..+..+...+ .+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence 36889999999764332211 1 1 12378899999997542 222222222111 245778899
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
.|....- -.+..+....++|+..++ +|++++++..
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9974332 234455556789988887 7777766543
No 382
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=1.2e-06 Score=60.40 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCccccccchhh--------hccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 56 TIKLQIWDTAGQERFRTITSS--------YYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
..+..++|++|...-...... .....|.+++++|+..... +.....+..++.. .-++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 356789999996533322222 2345788999999765332 1222333444432 22778999995
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.44 E-value=4.1e-06 Score=66.30 Aligned_cols=85 Identities=15% Similarity=0.060 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 56 TIKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
.+++.|+||+|....... ...+ ....+-++||+|+......... ...+... -.+--+|+||.|....-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCCCc
Confidence 368899999996543221 1111 2245789999998755332111 1222111 13457789999974321
Q ss_pred cCCHHHHHHHHHHhCCcEEEe
Q 028813 130 VVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~ 150 (203)
-.+.......++|+.++
T Consensus 256 ----G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFI 272 (429)
T ss_pred ----cHHhhhHHHHCCCeEEE
Confidence 11233444556665544
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.40 E-value=9.9e-06 Score=64.98 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=58.6
Q ss_pred EEEEEeCCCcc-------------ccccchhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813 58 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKC 123 (203)
Q Consensus 58 ~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 123 (203)
+..+.|.||.- ....+.+.+..+.+++|+|+--..-+. -..+.. .+...-+.+...|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEeec
Confidence 57789999932 223446678899999999975322111 111222 2344456678899999999
Q ss_pred CCCCCccCCHHHHHHHHHHhC-----CcEEEe
Q 028813 124 DLTANKVVSYETAKAFADEIG-----IPFMET 150 (203)
Q Consensus 124 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 150 (203)
|+.+.+..+.+.++++....- ..||.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 998877777888877765332 356665
No 385
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.4e-06 Score=67.09 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=93.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...+++.|+|...+||||+-..++... ...+....-+.+.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 577999999999999999887654311 0111111122223333333333
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNV---KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~---~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.++++.|+||+..|-.....-..++|..++|+++...+ .|+.- ++.....+... -...++++||+|-+..
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g--v~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG--VKHLIVLINKMDDPTV 232 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc--cceEEEEEEeccCCcc
Confidence 67899999999998777777778899999999985321 12211 11111122221 2467889999997543
Q ss_pred c--cCCHHH----HHHHHHHhC------CcEEEeecCCCCCHHHHHH
Q 028813 129 K--VVSYET----AKAFADEIG------IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 129 ~--~~~~~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 163 (203)
+ ...+++ +..|....+ ..++++|..+|.++.+...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2 112222 222333222 4689999999999988765
No 386
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.34 E-value=1.2e-06 Score=64.86 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIE-S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
.++++|.+|+|||||+|+|.+..... . ...+..++.....+...+ ..++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 57899999999999999999754221 1 111111222333333332 268899997543
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=1.2e-06 Score=68.42 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.+++++|.+|+|||||+|+|++... ..+..+.++ .....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCC
Confidence 4799999999999999999997432 223333333 3333444433 357999999653
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=1e-06 Score=69.00 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
.++.++|.+|||||||||+|+.... ..+..|.++ .....+..++ ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCC---CcEEEECCCcc
Confidence 4789999999999999999985431 123333333 3334444443 24789999964
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.5e-06 Score=67.44 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=34.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-Ccccc-----ceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIE-SYIST-----IGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
++|+|++|+|||||||+|++..... ...+. ..++....-+...+. ..++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 7999999999999999999654321 11111 112233344444321 26889999643
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.29 E-value=3.5e-06 Score=58.67 Aligned_cols=135 Identities=19% Similarity=0.339 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeC-CCcc---------------c----
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT-AGQE---------------R---- 69 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~---------------~---- 69 (203)
+|++.|++|+|||||+++++..-... ..+..+ +.......++...-+.+.|. .|.. .
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987533111 112222 44444445555666666666 3311 0
Q ss_pred ---cccc----hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCccCCHHHHHHHHH
Q 028813 70 ---FRTI----TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC-DLTANKVVSYETAKAFAD 141 (203)
Q Consensus 70 ---~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~ 141 (203)
+... ....+..+| ++++|=-.+-.+ ....|.+.+......++|++.++.+. +. ..++++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 1110 111112344 666772211100 11335555555555678988888666 32 12455666
Q ss_pred HhCCcEEEeecCCCCCH
Q 028813 142 EIGIPFMETSAKDSTNV 158 (203)
Q Consensus 142 ~~~~~~~~~Sa~~~~~i 158 (203)
..++.++.++..+.+-+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 66788898877766554
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=64.63 Aligned_cols=59 Identities=25% Similarity=0.245 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (203)
-.+++|.+|+|||||+|+|.... .......+..++....-+..++. -.++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 46899999999999999998632 22222233334445555555431 2577999976543
No 392
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=6.8e-06 Score=72.01 Aligned_cols=115 Identities=23% Similarity=0.228 Sum_probs=66.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc---cccc-eeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhhh-
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESY---ISTI-GVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSY- 77 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~- 77 (203)
-+|+|++|+||||++..- +..++-.. .... +.....-...+.+ .-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 579999999999998642 22221110 0000 0000111122333 44678998832 112334433
Q ss_pred --------ccCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 78 --------YRGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 78 --------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
.+..|++|+.+|+.+. .. ...++.-++++.....-..|+++++||.|+....
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence 2567999999997642 11 2234445666766677789999999999997643
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.22 E-value=1.7e-05 Score=59.57 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=65.3
Q ss_pred hhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 74 TSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.+.-+.+.|-+++|+.+.+|+ +...+..++-..... ++..++++||+|+.++.....++........+.+++.+|+
T Consensus 73 ~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 73 IRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA 149 (301)
T ss_pred eCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence 333445577777888877765 455555555444332 5666778999999876544334556666778899999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAASI 169 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~ 169 (203)
+++.|++++.++|...+
T Consensus 150 ~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 150 KNGDGLEELAELLAGKI 166 (301)
T ss_pred cCcccHHHHHHHhcCCe
Confidence 99999999998876543
No 394
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.21 E-value=4.7e-05 Score=58.41 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=80.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-----------CCccc------cce---eeeEEEEEEeC---------------Ce
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYI-----------ESYIS------TIG---VDFKIRTVEQD---------------GK 55 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~-----------~~~~~------~~~---~~~~~~~~~~~---------------~~ 55 (203)
.+|.|.=|||||||+++++..... ..... ..+ .+.....+.+. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 578899999999999999864320 00000 000 01111111111 12
Q ss_pred EEEEEEEeCCCccccccchhhhcc--------CCcEEEEEEECCChhhHHH-H-HHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 56 TIKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNN-V-KQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
..+..++++.|...-......+.. ..|++|-|+|+..-..... + .....++. ..=+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence 245678899886654333333332 3578999999876433221 1 22333342 223889999999
Q ss_pred CCCccCCHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHH
Q 028813 126 TANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 163 (203)
.++.. .+..+...+..+ ++++.++. .+.+..+++.
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 87663 455555555554 67888776 3444444433
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=1.3e-05 Score=62.49 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeE------------------EEEEEe---------CCeEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFK------------------IRTVEQ---------DGKTIK 58 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~~ 58 (203)
-.++++|++|+||||++.+|....... ......+.+.+ ...... .-...+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 468899999999999999987532100 00000001110 000100 002357
Q ss_pred EEEEeCCCccccccchhh---hc---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028813 59 LQIWDTAGQERFRTITSS---YY---RGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANK 129 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~ 129 (203)
+.++||+|.......... .+ ....-.++|++++.. +.+..+...+......-.. ...--+|+||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 889999996643322211 12 223456889998764 3333332222222110000 0123567899996432
Q ss_pred cCCHHHHHHHHHHhCCcEEEee
Q 028813 130 VVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+..+....+.|+..++
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEe
Confidence 2345566667787776664
No 396
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=4.1e-06 Score=63.83 Aligned_cols=57 Identities=32% Similarity=0.330 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-cc-----cceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESY-IS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.++++|++|+|||||+|+|++....... .+ +..++.....+..++ ...++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 5889999999999999999975432211 11 111122233333333 236889999654
No 397
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=8e-05 Score=52.25 Aligned_cols=58 Identities=5% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 102 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 102 ~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
+.+.+......+.|++++.+|... ......+....+..++.+ +.+|-+++.+.+.+.+
T Consensus 115 ~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 115 FVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 444444444457899999887532 122344555556667766 4556667777777654
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.15 E-value=5e-06 Score=63.05 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-c-----ccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESY-I-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
-.++++|++|+|||||+|.|++....... . .+..++.....+...+ ...++|+||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 46899999999999999999975432211 1 1111223333344432 2258999997654
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.13 E-value=4e-06 Score=66.46 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
.+.|++||-||+||||+||+|.+.+.- .+..|+. +-.-.++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGk--TKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGK--TKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCC--cceeEEEEcCC---CceecCCCCc
Confidence 689999999999999999999987642 3333433 34445555554 6778899994
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.09 E-value=3.7e-05 Score=53.84 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=45.8
Q ss_pred EEEEEEeCCCcccccc----chhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
..+.++|++|...... ....+. ...+.+++|+|+...... .++...+.... + ..-+|+||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence 5678899999743211 111111 247899999998654321 22333332222 2 356777999975432
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 028813 131 VSYETAKAFADEIGIPFME 149 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (203)
..+.+.+...++|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2223356667777654
No 401
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.04 E-value=1.2e-05 Score=56.98 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=39.2
Q ss_pred EEEEEeCCCccccccc---hhhh---ccCC---cEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 58 KLQIWDTAGQERFRTI---TSSY---YRGA---HGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~---~~~~---~~~~---d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
.+.++|+||+-+.... .+.+ +++- -+++|++|..-- ++...+..-+..+.....-..|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 5789999997643221 1111 2221 257777775421 2222333333334333333688899999999864
Q ss_pred C
Q 028813 128 N 128 (203)
Q Consensus 128 ~ 128 (203)
.
T Consensus 179 ~ 179 (273)
T KOG1534|consen 179 D 179 (273)
T ss_pred h
Confidence 4
No 402
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=9.6e-05 Score=56.82 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccccccchhhhcc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 57 IKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
.+..++++.|......+...++. ..+.+|.|+|+...... ........++.. .=+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 45678899997655444433321 24789999998653221 111112223321 2378899999875
Q ss_pred CccCCHHHHHHHHHHhC--CcEEEee
Q 028813 128 NKVVSYETAKAFADEIG--IPFMETS 151 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~S 151 (203)
.. +.++...+..+ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 34444444443 5666543
No 403
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.03 E-value=2.2e-05 Score=53.55 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 124 (203)
.+++.++|++|.... ...++..+|-++++....-.+.+.-+.- ..+ ...-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHh------hhcCEEEEeCCC
Confidence 367899999886432 2347888999999988764443322221 112 123478899987
No 404
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.03 E-value=0.00064 Score=46.88 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=102.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...-.|+++|..+.++..|.+++...... . .. .+.... .+. .|. . ....-..+|.++
T Consensus 13 ln~atiLLVg~e~~~~~~LA~a~l~~~~~------~--~l---~Vh~a~-sLP-----Lp~--e----~~~lRprIDlIV 69 (176)
T PF11111_consen 13 LNTATILLVGTEEALLQQLAEAMLEEDKE------F--KL---KVHLAK-SLP-----LPS--E----NNNLRPRIDLIV 69 (176)
T ss_pred cceeEEEEecccHHHHHHHHHHHHhhccc------e--eE---EEEEec-cCC-----Ccc--c----ccCCCceeEEEE
Confidence 45678999999999999999999863210 1 11 111100 000 011 1 111234579999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|++|.....++..++.-+..+......| .+.++.+-....+...+....+.+++..|++|++.+.-...++...+-+.|
T Consensus 70 Fvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRL 148 (176)
T PF11111_consen 70 FVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRL 148 (176)
T ss_pred EEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHH
Confidence 9999999999999988887774433333 466677777766666788899999999999999999999888888888888
Q ss_pred HHHHHHHhc
Q 028813 166 AASIKDRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+..--.
T Consensus 149 L~~lqi~aG 157 (176)
T PF11111_consen 149 LRMLQICAG 157 (176)
T ss_pred HHHHHHHcC
Confidence 887765433
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=3e-05 Score=61.47 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---Cccc-----c---------------ceeeeEEE--EEE-----eCCeEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIE---SYIS-----T---------------IGVDFKIR--TVE-----QDGKTIK 58 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~-----~---------------~~~~~~~~--~~~-----~~~~~~~ 58 (203)
-.++++|+.|+||||++..|.+..... .... + .+...... ..+ ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999886531100 0000 0 00000000 000 0001246
Q ss_pred EEEEeCCCcccccc----chhhhc--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 59 LQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 59 ~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
+.++||+|...... ....+. ....-.++|+|++. ...+. +.+..... - ..--+|+||.|....
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~---~-~~~~~I~TKlDEt~~--- 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG---H-GIHGCIITKVDEAAS--- 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC---C-CCCEEEEEeeeCCCC---
Confidence 78999999654322 122221 12345778899874 33333 32222221 1 223567899997442
Q ss_pred CHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 132 SYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.-.+..+....++|+..++ +|.+|
T Consensus 342 -~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 -LGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 2345566677788877664 45555
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=1.9e-05 Score=56.41 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
+++.++||+|....... ...++ ...+-+++|++++.... ...+...+ ... + +--+++||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~--~-~~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF--G-IDGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS--S-TCEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc--c-CceEEEEeecCCCC-
Confidence 56899999996543221 11221 24678899999876543 22222222 211 1 22556899997433
Q ss_pred cCCHHHHHHHHHHhCCcEEEee
Q 028813 130 VVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+..+....+.|+-.++
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEE
T ss_pred ---cccceeHHHHhCCCeEEEE
Confidence 2345666677788776664
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00017 Score=56.51 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=47.6
Q ss_pred EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.|+||+|....... ...++ ...+.++||+|++-.. ..+...+..+... ..--+|+||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 57899999996543221 22222 2346788889876432 1222333333221 223567899997542
Q ss_pred CCHHHHHHHHHHhCCcEEEee
Q 028813 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+..++...++|+..++
T Consensus 393 --~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2335566667787776653
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=0.00019 Score=58.29 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCccccccchhh---hcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 56 TIKLQIWDTAGQERFRTITSS---YYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
.+++.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 367899999996533221110 010 12245677776642 2233333333322 135678999999733
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 131 VSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
..-.+.......+.++.+++ +|..|
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 23455666667788776664 35554
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.92 E-value=2.8e-05 Score=62.05 Aligned_cols=86 Identities=20% Similarity=0.131 Sum_probs=47.4
Q ss_pred EEEEEEeCCCccccccch----hhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTIT----SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
..+.++||+|........ ..+ +...|.+++|+|++... ........+.... ...-+|+||.|....-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence 378999999965532221 111 33578899999987642 1112222221111 1235678999964321
Q ss_pred CCHHHHHHHHHHhCCcEEEeec
Q 028813 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
-.+.......+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2344555666777666543
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=8.3e-05 Score=59.96 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=47.8
Q ss_pred EEEEEEeCCCccccccc---hhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI---TSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
..+.++|++|....... ....+.. ..-.++|+|++... ..+.+..... ... ..--+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f---~~~-~~~g~IlTKlDet~--- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAY---RGP-GLAGCILTKLDEAA--- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHh---ccC-CCCEEEEeCCCCcc---
Confidence 35789999995433211 1111211 12267888887432 2222222222 221 23456789999643
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 131 VSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
..-.+..+....++|+.+++ +|++|
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 22445666777788877663 46666
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.00015 Score=52.35 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEEeC-CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 59 LQIWDT-AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 59 ~~i~D~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
+.+.|| +|.++|.. ...+.+|.+|.|+|.+.. ++...+.......... -.++.+|+||.|-.
T Consensus 136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 455665 34444432 235789999999998754 3433333222222222 27899999999953
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.89 E-value=1.1e-05 Score=62.13 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=42.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
.+.++++|+|-||+||||+||.|..+.. +....+ |.+.....+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p--GvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP--GVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc--cchhhhhheeccC---CceeccCCce
Confidence 6789999999999999999999997664 233333 4445555665554 7788999994
No 413
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.88 E-value=2.6e-05 Score=54.52 Aligned_cols=45 Identities=29% Similarity=0.211 Sum_probs=28.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
|++++|+|+.++.+... ..+...+. ....++|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 78999999987633110 12222211 22335899999999999643
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=0.00025 Score=55.42 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--C-CCccccceeeeEEEE---------------EE--e----------CCeEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY--I-ESYISTIGVDFKIRT---------------VE--Q----------DGKTIK 58 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~---------------~~--~----------~~~~~~ 58 (203)
=.|++|||+|+||||-+-+|..... . .....-.+++.+..- +. . .-.+++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 3589999999999999988764332 0 111111111111110 00 0 112257
Q ss_pred EEEEeCCCccccccc----hhhhccCC--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813 59 LQIWDTAGQERFRTI----TSSYYRGA--HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 59 ~~i~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~ 132 (203)
+.++||.|...+... ...++..+ .-+.||++++... ..+.+.+..+.... . --+++||.|... .
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~---i-~~~I~TKlDET~----s 353 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP---I-DGLIFTKLDETT----S 353 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC---c-ceeEEEcccccC----c
Confidence 899999997655433 23333322 3456677776543 33444444333221 1 245689999643 2
Q ss_pred HHHHHHHHHHhCCcEEEee--cCCCCCHHHH-HHHHHHHHHHH
Q 028813 133 YETAKAFADEIGIPFMETS--AKDSTNVEQA-FMAMAASIKDR 172 (203)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~-~~~l~~~~~~~ 172 (203)
.-.+.....+.+.|+-.++ ..-.+++..+ -.||++.+...
T Consensus 354 ~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 354 LGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 3345555666676655553 2223333322 23455555433
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00034 Score=55.13 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=51.1
Q ss_pred EEEEEEEeCCCcccccc----chhhhccCC--c-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 56 TIKLQIWDTAGQERFRT----ITSSYYRGA--H-GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.+.+.++||+|...... ....++... + -.++|+|++... ..+.+.+...... .+--+++||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 36789999999654321 122223322 3 578999988653 2233333322211 133567899996432
Q ss_pred ccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 129 KVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.-.+..+....++|+..++ +|+++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2345556667788776653 46666
No 416
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00026 Score=60.01 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceeeeEE---------------EEE-Ee-----------CCeEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKI---------------RTV-EQ-----------DGKTIKL 59 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~---------------~~~-~~-----------~~~~~~~ 59 (203)
-|+|+|+.|+||||.+.+|.+...... ...-.+.+.+. ..+ .. .-...++
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 589999999999999999875321100 00000000000 000 00 0122478
Q ss_pred EEEeCCCccccccc----hhhhc--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813 60 QIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 60 ~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~ 132 (203)
.|+||+|....... ...+. ...+-.++|+|++.. +.+.++.. .+...... .+-=+|+||.|....
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~-~i~glIlTKLDEt~~---- 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGE-DVDGCIITKLDEATH---- 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccC-CCCEEEEeccCCCCC----
Confidence 99999995432221 11111 234567889998753 33333322 22211111 123567899997432
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 133 YETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.-.+..+....++|+.+++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 2345566667788877663 46666
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=0.00018 Score=57.40 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.++||+|....... ...+ .-..|.+++|+|+.... ....+...+.... + ..-+|+||.|.....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 57899999995433221 1111 22467889999987543 2233333332211 1 235668999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEeec
Q 028813 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
-.+.......++|+.++..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2256666677888766644
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.84 E-value=3.7e-05 Score=57.61 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=38.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
.+..++++|+|-||+|||||||++..... .....++.+...... +.+.+. -.+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence 35678999999999999999999864322 223334443333322 333322 24788899994
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.84 E-value=0.00013 Score=49.20 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC
Q 028813 12 LLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91 (203)
Q Consensus 12 ~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (203)
+.-|..|+|||++.-.+...-.... ....-.+.. .......+++.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3456789999998776643211000 000000000 0001112688999999753 333456788999999999876
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 92 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 92 ~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
..++..+...++.+.... ...++.+|+|+.+.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 344444444455554333 24567899999974
No 420
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00014 Score=58.09 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=50.3
Q ss_pred EEEEEEeCCCccccc----cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 57 IKLQIWDTAGQERFR----TITSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
+++.++|++|..... .....++. .-.-+.+|++++... ..+.+.+..+. .-+ +--+++||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~---~~~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS---RLP-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC---CCC-CCEEEEeccccccc-
Confidence 578999999965432 12223333 223567788876432 22222222222 112 23577899997432
Q ss_pred cCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 130 VVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.-.+..+....++|+..++ +|.+|
T Consensus 373 ---~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2346667777888877664 35554
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00014 Score=56.74 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=49.2
Q ss_pred EEEEEEeCCCccccccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.++||+|....... ...+.. ..+.+++|.++... ...+...+.. +..- .+--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~---f~~l-~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPK---LAEI-PIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHh---cCcC-CCCEEEEEcccCCCC--
Confidence 68899999997543222 122222 33566777776432 2222222222 2211 233667899997432
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 131 VSYETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
.-.+..+....++|+..++. |.+|.
T Consensus 358 --~G~~Lsv~~~tglPIsylt~--GQ~Vp 382 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMTD--GQNIT 382 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEec--CCCCC
Confidence 23456666778888766643 44444
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00011 Score=58.01 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCC---------Cc--c----------ccceeeeEEEE-E-----EeCCeEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS-YIE---------SY--I----------STIGVDFKIRT-V-----EQDGKTIKLQ 60 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~-~~~---------~~--~----------~~~~~~~~~~~-~-----~~~~~~~~~~ 60 (203)
.-++++|++||||||++..|.... ... +. . ...+....... . ......+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 000 00 0 00011111000 0 0011235789
Q ss_pred EEeCCCcccccc----chhhhcc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 61 IWDTAGQERFRT----ITSSYYR-----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 61 i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
++||+|...... .+..++. ...-.+||+|++.... .+...+...... .+--+|+||.|....
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~~----~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYESL----NYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcCC----CCCEEEEEcccCCCC---
Confidence 999999643211 1222222 1235788999876541 222222222111 223567899996432
Q ss_pred CHHHHHHHHHHhCCcEEEee
Q 028813 132 SYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+..+....+.|+..++
T Consensus 375 -~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEe
Confidence 2335556667788776654
No 423
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.00018 Score=54.25 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc---------------
Q 028813 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------------- 67 (203)
Q Consensus 3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------------- 67 (203)
|+..+..+++++|++|-|||+++++|.....+... ... ..+.+...++|..
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDA-------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCC-------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 35567889999999999999999999975533221 110 1123344444431
Q ss_pred ---------cccccchhhhccCCcEEEEEEECC-C--hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 028813 68 ---------ERFRTITSSYYRGAHGIIIVYDVT-D--QESFNNVKQWLNEIDRYAS-DNVNKLLVGNKC 123 (203)
Q Consensus 68 ---------~~~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~ 123 (203)
..........++...+=++++|=- + ..+...-+..++.++.... -++|++.++++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111222334556677788888821 1 1122333445555555443 378999988653
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.78 E-value=0.00022 Score=56.96 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=46.9
Q ss_pred EEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.|+||+|....... ...+ .-..+.+++|+|+.... .+......+.... + ..-+|+||.|.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 57899999995433211 1111 12456789999986542 2222222232211 1 235677999963221
Q ss_pred CCHHHHHHHHHHhCCcEEEeec
Q 028813 131 VSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
-.+.......++|+..+..
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2255566677888766643
No 425
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.76 E-value=0.00016 Score=40.23 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=28.8
Q ss_pred ccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813 78 YRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 124 (203)
-+-.++++|++|++... +++.-...+..++.... ++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 34568999999998754 45555556777766654 589999999998
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.74 E-value=0.00022 Score=45.71 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=58.7
Q ss_pred EEEc-CCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813 12 LLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90 (203)
Q Consensus 12 ~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (203)
+++| ..|+||||+...|...-....... .-....+.... .++.++|+|+.... .....+..+|.++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~-----~~l~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRR-----VLLVDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ 74 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCc-----EEEEECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC
Confidence 4444 478999998877653211110001 11111111111 17899999986533 234467889999999986
Q ss_pred CChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028813 91 TDQESFNNVKQWLNEIDRYASD-NVNKLLVGNK 122 (203)
Q Consensus 91 ~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK 122 (203)
+ ..++..+..+++.+...... ...+.+|+|+
T Consensus 75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5 45566677777766655433 3466777775
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.73 E-value=0.00031 Score=43.74 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=44.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-hhhhccCCcEEEEEEE
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYD 89 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 89 (203)
+++.|..|+||||+...+...-.... ..... .+ ++.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG--------KRVLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--------CeEEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988765321101 01111 11 7788999986543321 1445677899999998
Q ss_pred CCChh
Q 028813 90 VTDQE 94 (203)
Q Consensus 90 ~~~~~ 94 (203)
.....
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 76543
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.67 E-value=0.00027 Score=45.00 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=49.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 11 LLLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 11 i~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
|.|.| ..|+||||+...+...-.. . + ....-++.+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~--~~vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----G--KRVLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----C--CcEEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 4689999998876542211 0 1 01111112211 678999999865332 3356778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028813 90 VTDQESFNNVKQWLN 104 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~ 104 (203)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 65 455556655554
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.00062 Score=51.06 Aligned_cols=132 Identities=19% Similarity=0.181 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-----------CC----------ccccceeeeEEEEEE----------e-CCeE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-----------ES----------YISTIGVDFKIRTVE----------Q-DGKT 56 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-----------~~----------~~~~~~~~~~~~~~~----------~-~~~~ 56 (203)
-+++++|++|+||||++..+...-.. .. +....+...... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999887532100 00 000011111110 00 0 1123
Q ss_pred EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.++|++|....... +..++ ...+-+++|+|++... +.+..++..+. .- .+--+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~---~~-~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK---DI-HIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhC---CC-CCCEEEEEeecCCCC--
Confidence 68899999996643211 22222 2345688999986432 12223333332 21 234667899997542
Q ss_pred CCHHHHHHHHHHhCCcEEEee
Q 028813 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
.-.+..+....+.|+..++
T Consensus 227 --~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2335556667788776664
No 430
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00019 Score=57.38 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=73.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC------------CCC--CccccceeeeEEEEEE----------------eCCeE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS------------YIE--SYISTIGVDFKIRTVE----------------QDGKT 56 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~------------~~~--~~~~~~~~~~~~~~~~----------------~~~~~ 56 (203)
..-++-++.....|||||-..|.... +.. ..+...++++.+.-+. -++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 34467888999999999999986321 100 1111112222222211 12334
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
+-+.++|.||+-.|.+.....++-.|+.++|+|.-+.-..+.-..+.+.+.. .+.-++++||+|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 6788999999999999999999999999999998775443332233333422 2334667899995
No 431
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=8e-05 Score=55.05 Aligned_cols=61 Identities=23% Similarity=0.461 Sum_probs=44.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI----STIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
-..++|+.+|..|-|||||+..|.+..+...+. +............-.+..+++++.||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 467999999999999999999999877643322 2333233333334456678899999998
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=5.3e-05 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 433
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.57 E-value=0.00015 Score=55.91 Aligned_cols=129 Identities=24% Similarity=0.232 Sum_probs=74.2
Q ss_pred eCCCcc-ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH
Q 028813 63 DTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD 141 (203)
Q Consensus 63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 141 (203)
+.+|+. .+.......+..+|+++.|+|+.++.+... ..+..... +.|.++|+||.|+.+... ...-.+.+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence 345643 445556667889999999999998865211 11222222 355699999999976443 2222233333
Q ss_pred HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccCCCCCCCC
Q 028813 142 EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS-QPSMNNARPPTVQIKGQPVAQKS 198 (203)
Q Consensus 142 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
+.+...+.+++..+.+...+...+.....+.... .+.....+....-+.+-|+.+||
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKS 146 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKS 146 (322)
T ss_pred cCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHH
Confidence 3367778888888887777765444332222111 11112233344666677777766
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.57 E-value=6.1e-05 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+|+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=7.1e-05 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
No 436
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.54 E-value=0.0017 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4788999999999999999853
No 437
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.53 E-value=0.00077 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3677999999999999988753
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.52 E-value=7.9e-05 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+|+|+|++|||||||.+.|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.52 E-value=0.0001 Score=42.02 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
..+|.|+.|||||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998763
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=9.7e-05 Score=49.88 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028813 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~ 30 (203)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00089 Score=44.85 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-.+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 442
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.47 E-value=0.0023 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999998854
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.43 E-value=8.9e-05 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 444
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.43 E-value=0.0019 Score=45.44 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=59.1
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 134 (203)
..+++.++|+|+.... .....+..+|.+++++..+. .+...+..++..+... +.|+.+|+||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 3478999999976432 34456788999999998774 3555566666555443 4678899999996432 235
Q ss_pred HHHHHHHHhCCcEEE
Q 028813 135 TAKAFADEIGIPFME 149 (203)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (203)
+.+++..+++++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 567777778887663
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.37 E-value=0.00018 Score=42.22 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998864
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.37 E-value=0.00021 Score=51.62 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
|.++ .-.-|+|+|++|||||||++.|.+.
T Consensus 1 ~~~~--~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKP--KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCC--CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444 4467999999999999999999753
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00024 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
++||++.+-+.|+++.+.+...+.+.
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCe
Confidence 68999999999999998888776654
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.34 E-value=0.00021 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999998854
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.33 E-value=0.00024 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
++|+|++|||||||++.+-+-..
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccC
Confidence 78999999999999998877543
No 450
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.31 E-value=0.0018 Score=51.70 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred cccchhhhccCCcEEEEEEE-CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813 70 FRTITSSYYRGAHGIIIVYD-VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~ 125 (203)
.-.+.+..|++++.+|| | .+.--+..++++++..++.+...++.++++-.|.+.
T Consensus 148 RVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 148 RVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred HHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 34446667778876663 3 122234567777777787777788999998888763
No 451
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00022 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 452
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0001 Score=53.85 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=82.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCccccccchhhhcc----C
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRTITSSYYR----G 80 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~----~ 80 (203)
+.+.-|++.|..+ +||+|++...+.-.. ..++...+++...-.-.++ .--..+|+.+|......+..--+. .
T Consensus 43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGG--KTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCc--eeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 4567788888654 599999888765432 2334444444333322221 122468999987654333222211 1
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHHHHH---------------------------h----------hcCCCCcEEEEEeC
Q 028813 81 AHGIIIVYDVTDQES-FNNVKQWLNEID---------------------------R----------YASDNVNKLLVGNK 122 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~---------------------------~----------~~~~~~p~ilv~nK 122 (203)
.-.+|++.|+++++. |..++..+..++ + ..+-.+|++||+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 225899999998764 223322222211 0 01114899999999
Q ss_pred CCCCCCcc-----CCHHHHHHHHHHhCCcEEEeecCCC
Q 028813 123 CDLTANKV-----VSYETAKAFADEIGIPFMETSAKDS 155 (203)
Q Consensus 123 ~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.|.....+ .....++.++..+|..++..|++..
T Consensus 200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe 237 (363)
T KOG3929|consen 200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKME 237 (363)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Confidence 99854422 2223345566677777777777644
No 453
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00031 Score=51.31 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
++++|++|+|||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999887443
No 454
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.27 E-value=0.0027 Score=44.91 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
|+++|++||||+|+++.|....
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8899999999999999998763
No 455
>PRK01889 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.0003 Score=55.05 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-+++++|.+|+|||||++.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998754
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.25 E-value=0.00026 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.22 E-value=0.00029 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.|+|+|+.|||||||++.|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 458
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.22 E-value=0.0013 Score=43.83 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 459
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.22 E-value=0.011 Score=41.30 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=51.2
Q ss_pred EEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH
Q 028813 58 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK 137 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 137 (203)
++.++|+|+.... .....+..+|.+|++++.+. .++..+..+++.+.... .....+|+|+.|..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 7899999986433 23445678999999998764 34455555555554421 23467889999864321 222234
Q ss_pred HHHHHhCCcEE
Q 028813 138 AFADEIGIPFM 148 (203)
Q Consensus 138 ~~~~~~~~~~~ 148 (203)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555676655
No 460
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00023 Score=47.76 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+...+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6778999999999999999999874
No 461
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.21 E-value=0.0026 Score=51.57 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=44.4
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
.+|||=|+-+.......+.+.+.+..+ .....|+|++++-+-............+.+....++..+..+.....=+...
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~ 275 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF 275 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence 467888876544333333333333222 2346889999877655322211111122233455666666666655555555
Q ss_pred HHHHHHHHH
Q 028813 162 FMAMAASIK 170 (203)
Q Consensus 162 ~~~l~~~~~ 170 (203)
+..|.....
T Consensus 276 L~ric~~e~ 284 (634)
T KOG1970|consen 276 LKRICRIEA 284 (634)
T ss_pred HHHHHHHhc
Confidence 555554433
No 462
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.19 E-value=0.00015 Score=60.80 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=60.5
Q ss_pred EEEEEeCCCcc-------------ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813 58 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 58 ~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 124 (203)
.+++.|.||.. ....+...++..-+.+|+.+...+-+ -....++......-+.+...+.|++|.|
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~D 210 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKFD 210 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence 46788999832 23445667788888888888765522 1123456666666777788899999999
Q ss_pred CCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
+.+........+.........+++.+..+.+..++.-.
T Consensus 211 lmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~di~~~k 248 (657)
T KOG0446|consen 211 FMDKGTNAVTRLVGRPITLKVGYVGVVNRSQSIIDFKK 248 (657)
T ss_pred hhhcCCcceeeecCCccccccceeeeeccchhhhhhhh
Confidence 86432211111111111223456666666555554444
No 463
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00094 Score=46.58 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
++||++.+=+.|++..+.++..+.+..
T Consensus 179 PTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 689999999999999988888877653
No 464
>PRK03839 putative kinase; Provisional
Probab=97.18 E-value=0.00033 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+|+|.|||||||+.+.|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.18 E-value=0.00063 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566889999999999999999753
No 466
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0021 Score=49.97 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------cccceeeeEEE--EEE-----------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY---------------------ISTIGVDFKIR--TVE----------- 51 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~--~~~----------- 51 (203)
.+.--|+++|..|+||||.+-.|....-...+ ....++.++.. ..+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 34556899999999999998877532100000 00011222221 110
Q ss_pred eCCeEEEEEEEeCCCcccccc-chhhh-----ccCCcEEEEEEECCChhhHHH
Q 028813 52 QDGKTIKLQIWDTAGQERFRT-ITSSY-----YRGAHGIIIVYDVTDQESFNN 98 (203)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~s~~~ 98 (203)
+....+++.|.||+|...... +.... .-..|-+|||.|++-....+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 122347899999999543211 11111 234688999999987665443
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.0018 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
|+|+|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987643
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00025 Score=49.48 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.-+++.||+|+||||++++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999765
No 469
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0004 Score=45.99 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 470
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.00043 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
-.++++|++|+||||+++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999987554
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.14 E-value=0.00041 Score=44.32 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028813 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~ 29 (203)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999976
No 472
>PRK14530 adenylate kinase; Provisional
Probab=97.14 E-value=0.00039 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.14 E-value=0.0004 Score=46.72 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.13 E-value=0.00044 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999664
No 475
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.13 E-value=0.00049 Score=48.02 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
|+++ ..|+++|++||||||+...|..
T Consensus 1 ~~~~----~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 1 MLKG----PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 5555 6899999999999999998864
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.13 E-value=0.00055 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..-+.|+|.+|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 477
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.12 E-value=0.00041 Score=50.90 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
+..++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998854
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.10 E-value=0.0004 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.00048 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-.++|+|++|||||||++.+++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998743
No 480
>PRK08233 hypothetical protein; Provisional
Probab=97.07 E-value=0.00057 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999753
No 481
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.07 E-value=0.0036 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-|+|.|++||||||++++++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 38999999999999999987654
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.06 E-value=0.00072 Score=48.88 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..+.|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998763
No 483
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.00052 Score=48.69 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998653
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.05 E-value=0.00045 Score=49.47 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.05 E-value=0.00053 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 486
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.05 E-value=0.00066 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+|+++|++|+||||+.+.|...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998753
No 487
>PRK13949 shikimate kinase; Provisional
Probab=97.05 E-value=0.00057 Score=47.72 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 488
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.05 E-value=0.00051 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~ 29 (203)
.-|+++|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 489
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.04 E-value=0.00028 Score=54.74 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (203)
..-|.|.++|-||+||||+||+|-....-...+-.-. .+.+.+-.--.+|.++|+||
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE----TKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE----TKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc----chHHHHHHHHhceeEecCCC
No 490
>PRK02496 adk adenylate kinase; Provisional
Probab=97.04 E-value=0.00059 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 491
>PRK14532 adenylate kinase; Provisional
Probab=97.04 E-value=0.00054 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+++|+|||||||+.+.|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 492
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00055 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~ 29 (203)
++|+|.|.||+||||+.+.|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999987
No 493
>PRK00625 shikimate kinase; Provisional
Probab=97.02 E-value=0.0006 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 494
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.00 E-value=0.00069 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++|+|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 495
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.00 E-value=0.00062 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..++|+|+|+|||||||+.+.|..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998854
No 496
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.99 E-value=0.0011 Score=44.53 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY 37 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~ 37 (203)
..+.++.-..++.|-||+|||||+++|-..-+....
T Consensus 3 ~~~~nR~~~fIltGgpGaGKTtLL~aLa~~Gfatve 38 (183)
T COG3911 3 VRPFNRHKRFILTGGPGAGKTTLLAALARAGFATVE 38 (183)
T ss_pred ccccccceEEEEeCCCCCcHHHHHHHHHHcCceeec
Confidence 345566677899999999999999999876654333
No 497
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.00064 Score=49.32 Aligned_cols=20 Identities=45% Similarity=0.685 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028813 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~ 30 (203)
|+++|++|||||||++.+.+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 89999999999999999987
No 498
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.99 E-value=0.00087 Score=46.84 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++|+|||||+|-+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 58999999999999999877643
No 499
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.009 Score=45.71 Aligned_cols=144 Identities=21% Similarity=0.258 Sum_probs=77.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------cccceeeeEEEE-------EEe-----
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY---------------------ISTIGVDFKIRT-------VEQ----- 52 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~-------~~~----- 52 (203)
.++.-|+++|-.|+||||-|-+|...-..... ....+....... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45788999999999999999877531100000 000111111111 000
Q ss_pred -CCeEEEEEEEeCCCccccccchhh-------hccCCcE-----EEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEE
Q 028813 53 -DGKTIKLQIWDTAGQERFRTITSS-------YYRGAHG-----IIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLL 118 (203)
Q Consensus 53 -~~~~~~~~i~D~~g~~~~~~~~~~-------~~~~~d~-----~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~il 118 (203)
....+++.++||+|.-+....... .....+. +++++|+.-. +.+.+++.+-+.+ +. --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l-~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GL-DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CC-ceE
Confidence 112367899999996543322211 2223333 7778898765 4455555444333 12 245
Q ss_pred EEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 119 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
++||.|-...--. +..++...++|+..+- -|++++++.
T Consensus 290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 7899995332222 3345667788877663 266666654
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.00099 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
Done!