Query 028813
Match_columns 203
No_of_seqs 153 out of 1925
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 04:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-43 4.8E-48 255.7 18.6 169 6-174 11-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.5E-40 8.7E-45 237.7 23.8 202 1-202 1-206 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.6E-38 5.6E-43 228.3 18.8 201 1-202 1-207 (207)
4 3tkl_A RAS-related protein RAB 100.0 4.6E-36 1.6E-40 213.7 24.1 175 2-176 10-184 (196)
5 2fu5_C RAS-related protein RAB 100.0 1.4E-36 4.6E-41 214.3 20.0 175 1-175 1-175 (183)
6 3cpj_B GTP-binding protein YPT 100.0 2.1E-36 7.3E-41 219.9 19.7 171 5-175 10-180 (223)
7 2bme_A RAB4A, RAS-related prot 100.0 9.6E-36 3.3E-40 210.4 22.5 176 1-176 3-178 (186)
8 3tw8_B RAS-related protein RAB 100.0 1.6E-35 5.4E-40 208.2 22.9 175 1-176 2-176 (181)
9 2ew1_A RAS-related protein RAB 100.0 2.5E-35 8.6E-40 210.9 22.3 172 4-175 22-193 (201)
10 2bov_A RAla, RAS-related prote 100.0 1.6E-35 5.5E-40 212.4 21.1 171 5-176 11-182 (206)
11 1zbd_A Rabphilin-3A; G protein 100.0 7.2E-35 2.5E-39 208.8 24.1 173 4-176 4-176 (203)
12 2gf9_A RAS-related protein RAB 100.0 8.8E-35 3E-39 206.2 23.6 169 5-173 19-187 (189)
13 1z0f_A RAB14, member RAS oncog 100.0 3.9E-35 1.3E-39 205.8 21.3 168 4-171 11-178 (179)
14 2a5j_A RAS-related protein RAB 100.0 5.9E-35 2E-39 207.4 22.3 170 5-174 18-187 (191)
15 2hup_A RAS-related protein RAB 100.0 4.3E-35 1.5E-39 209.8 20.9 169 5-173 26-195 (201)
16 2efe_B Small GTP-binding prote 100.0 9.1E-35 3.1E-39 204.4 22.0 168 5-172 9-176 (181)
17 2g6b_A RAS-related protein RAB 100.0 1.5E-34 5E-39 203.2 22.9 171 4-174 6-177 (180)
18 2fn4_A P23, RAS-related protei 100.0 8E-35 2.7E-39 204.6 21.6 173 1-174 2-175 (181)
19 3dz8_A RAS-related protein RAB 100.0 5.1E-36 1.8E-40 212.9 14.7 171 4-174 19-189 (191)
20 1g16_A RAS-related protein SEC 100.0 9.7E-35 3.3E-39 202.2 20.7 167 6-173 1-167 (170)
21 1z08_A RAS-related protein RAB 100.0 4.8E-35 1.6E-39 203.8 19.1 167 5-171 3-169 (170)
22 2oil_A CATX-8, RAS-related pro 100.0 1.5E-34 5.1E-39 205.6 21.9 171 4-174 21-191 (193)
23 3kkq_A RAS-related protein M-R 100.0 2.7E-34 9.1E-39 202.5 22.6 169 2-171 12-182 (183)
24 2il1_A RAB12; G-protein, GDP, 100.0 5.1E-35 1.7E-39 207.9 19.0 170 3-172 21-191 (192)
25 2fg5_A RAB-22B, RAS-related pr 100.0 5.5E-35 1.9E-39 207.7 18.9 169 3-171 18-186 (192)
26 3t5g_A GTP-binding protein RHE 100.0 2.3E-34 7.9E-39 202.5 21.9 170 6-176 4-174 (181)
27 2o52_A RAS-related protein RAB 100.0 1.3E-34 4.3E-39 207.2 20.7 172 5-176 22-193 (200)
28 3bc1_A RAS-related protein RAB 100.0 2.4E-34 8.3E-39 204.3 22.1 176 1-176 3-190 (195)
29 1z0j_A RAB-22, RAS-related pro 100.0 5.9E-34 2E-38 198.2 22.0 165 5-169 3-167 (170)
30 1r2q_A RAS-related protein RAB 100.0 3.4E-34 1.2E-38 199.3 20.6 164 6-169 4-167 (170)
31 1ek0_A Protein (GTP-binding pr 100.0 2.1E-34 7.2E-39 200.4 19.2 163 7-169 2-167 (170)
32 3cbq_A GTP-binding protein REM 100.0 2.2E-34 7.5E-39 205.2 19.6 171 4-174 19-191 (195)
33 1ky3_A GTP-binding protein YPT 100.0 2E-34 7E-39 202.6 19.2 174 1-174 1-181 (182)
34 1x3s_A RAS-related protein RAB 100.0 7.9E-34 2.7E-38 201.9 22.3 173 1-174 8-181 (195)
35 1z2a_A RAS-related protein RAB 100.0 2.9E-34 1E-38 199.4 19.2 165 6-171 3-167 (168)
36 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-33 3.8E-38 200.1 22.5 169 6-176 2-171 (189)
37 2j0v_A RAC-like GTP-binding pr 100.0 1.3E-34 4.4E-39 208.8 17.9 168 6-175 7-184 (212)
38 3cph_A RAS-related protein SEC 100.0 1.4E-33 5E-38 203.3 22.9 172 5-177 17-188 (213)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.7E-33 5.9E-38 197.2 22.6 166 5-171 4-174 (177)
40 2nzj_A GTP-binding protein REM 100.0 1.5E-33 5.1E-38 197.1 21.9 169 6-175 2-173 (175)
41 2y8e_A RAB-protein 6, GH09086P 100.0 4.3E-34 1.5E-38 200.5 18.7 166 6-171 12-177 (179)
42 3q85_A GTP-binding protein REM 100.0 7.5E-34 2.6E-38 197.6 19.5 165 8-172 2-168 (169)
43 1z06_A RAS-related protein RAB 100.0 9E-34 3.1E-38 200.9 19.9 167 5-171 17-188 (189)
44 2hxs_A RAB-26, RAS-related pro 100.0 2.7E-34 9.2E-39 201.5 16.9 168 5-172 3-174 (178)
45 2p5s_A RAS and EF-hand domain 100.0 3.3E-34 1.1E-38 204.8 17.4 167 5-171 25-197 (199)
46 2f7s_A C25KG, RAS-related prot 100.0 3.6E-34 1.2E-38 207.2 17.7 172 4-175 21-203 (217)
47 2gf0_A GTP-binding protein DI- 100.0 5E-34 1.7E-38 203.6 17.9 167 6-174 6-174 (199)
48 3clv_A RAB5 protein, putative; 100.0 5.4E-33 1.9E-37 198.9 23.2 166 6-174 5-207 (208)
49 3oes_A GTPase rhebl1; small GT 100.0 7.6E-34 2.6E-38 203.2 18.2 169 6-175 22-191 (201)
50 3reg_A RHO-like small GTPase; 100.0 5.6E-33 1.9E-37 197.6 22.1 167 5-173 20-190 (194)
51 4djt_A GTP-binding nuclear pro 100.0 1E-33 3.5E-38 205.0 18.5 175 5-179 8-183 (218)
52 2a9k_A RAS-related protein RAL 100.0 3.6E-33 1.2E-37 197.1 20.5 170 5-175 15-185 (187)
53 1u8z_A RAS-related protein RAL 100.0 3.2E-33 1.1E-37 193.9 19.7 165 6-171 2-167 (168)
54 3c5c_A RAS-like protein 12; GD 100.0 2E-33 6.8E-38 198.9 18.9 165 5-171 18-186 (187)
55 3l0i_B RAS-related protein RAB 100.0 5.5E-36 1.9E-40 214.1 5.3 170 2-171 27-196 (199)
56 3q3j_B RHO-related GTP-binding 100.0 2.4E-33 8.4E-38 202.5 19.1 170 4-175 23-207 (214)
57 3ihw_A Centg3; RAS, centaurin, 100.0 7.9E-33 2.7E-37 195.4 21.3 164 4-174 16-183 (184)
58 3q72_A GTP-binding protein RAD 100.0 8E-33 2.7E-37 191.9 20.5 163 8-172 2-165 (166)
59 1kao_A RAP2A; GTP-binding prot 100.0 4.1E-33 1.4E-37 193.2 18.6 164 7-171 2-166 (167)
60 2g3y_A GTP-binding protein GEM 100.0 8.5E-33 2.9E-37 198.8 20.6 170 4-173 33-205 (211)
61 2atx_A Small GTP binding prote 100.0 2.4E-32 8.2E-37 194.3 22.5 164 5-170 15-192 (194)
62 1c1y_A RAS-related protein RAP 100.0 9.1E-33 3.1E-37 191.6 19.8 163 7-170 2-166 (167)
63 1gwn_A RHO-related GTP-binding 100.0 5.3E-33 1.8E-37 199.5 18.9 169 1-171 21-204 (205)
64 2q3h_A RAS homolog gene family 100.0 1.9E-32 6.4E-37 195.9 21.5 168 5-174 17-198 (201)
65 2yc2_C IFT27, small RAB-relate 100.0 1.4E-33 4.9E-38 202.5 15.5 169 6-174 18-195 (208)
66 2atv_A RERG, RAS-like estrogen 100.0 1.6E-32 5.3E-37 195.6 19.8 167 6-174 26-194 (196)
67 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-32 8.6E-37 191.6 20.5 163 6-175 5-173 (178)
68 3con_A GTPase NRAS; structural 100.0 8.5E-32 2.9E-36 190.8 23.4 168 5-174 18-186 (190)
69 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.9E-32 1E-36 192.3 19.6 164 6-171 3-180 (186)
70 2j1l_A RHO-related GTP-binding 100.0 3.8E-32 1.3E-36 196.3 19.6 167 6-174 32-212 (214)
71 1m7b_A RND3/RHOE small GTP-bin 100.0 3.4E-32 1.2E-36 192.1 18.7 165 5-171 4-183 (184)
72 2ce2_X GTPase HRAS; signaling 100.0 1.6E-31 5.6E-36 184.8 21.8 163 7-171 2-165 (166)
73 2erx_A GTP-binding protein DI- 100.0 1.7E-32 6E-37 191.0 16.2 163 7-170 2-166 (172)
74 2gco_A H9, RHO-related GTP-bin 100.0 1.9E-31 6.6E-36 190.7 21.9 163 6-170 23-199 (201)
75 3t1o_A Gliding protein MGLA; G 100.0 2.8E-32 9.5E-37 194.2 15.9 169 4-175 10-196 (198)
76 2fv8_A H6, RHO-related GTP-bin 100.0 2.2E-31 7.5E-36 191.3 20.7 165 6-172 23-201 (207)
77 2cjw_A GTP-binding protein GEM 100.0 5E-31 1.7E-35 187.3 21.0 167 6-173 4-174 (192)
78 3bwd_D RAC-like GTP-binding pr 100.0 1.8E-32 6.3E-37 192.8 12.8 163 6-170 6-180 (182)
79 4gzl_A RAS-related C3 botulinu 100.0 1.8E-31 6E-36 191.4 18.1 162 6-169 28-203 (204)
80 4bas_A ADP-ribosylation factor 100.0 1.7E-31 5.7E-36 190.5 17.2 165 4-174 13-192 (199)
81 3gj0_A GTP-binding nuclear pro 100.0 5.3E-32 1.8E-36 196.4 14.8 168 4-174 11-178 (221)
82 2f9l_A RAB11B, member RAS onco 100.0 2.4E-30 8.1E-35 184.8 23.0 171 6-176 3-173 (199)
83 2h57_A ADP-ribosylation factor 100.0 3.2E-30 1.1E-34 182.8 18.4 162 5-172 18-188 (190)
84 1oix_A RAS-related protein RAB 100.0 2.3E-29 7.9E-34 178.6 21.2 166 4-169 25-190 (191)
85 1ksh_A ARF-like protein 2; sma 100.0 9.2E-30 3.1E-34 179.7 19.1 160 6-172 16-181 (186)
86 1upt_A ARL1, ADP-ribosylation 100.0 2.8E-30 9.5E-35 179.8 16.0 159 6-171 5-169 (171)
87 1zd9_A ADP-ribosylation factor 100.0 6.3E-31 2.1E-35 186.2 12.6 161 6-172 20-186 (188)
88 1r8s_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 182.8 11.2 157 9-172 1-163 (164)
89 1f6b_A SAR1; gtpases, N-termin 100.0 5.3E-30 1.8E-34 182.9 16.0 156 6-168 23-196 (198)
90 1zj6_A ADP-ribosylation factor 100.0 7.4E-30 2.5E-34 180.4 15.9 160 6-172 14-179 (187)
91 1m2o_B GTP-binding protein SAR 100.0 1.3E-29 4.6E-34 179.7 17.0 156 6-168 21-189 (190)
92 2h17_A ADP-ribosylation factor 100.0 6.5E-30 2.2E-34 179.9 15.1 157 5-168 18-180 (181)
93 2b6h_A ADP-ribosylation factor 100.0 1.2E-30 4E-35 185.5 11.4 158 6-170 27-190 (192)
94 1fzq_A ADP-ribosylation factor 100.0 2.9E-29 1E-33 176.6 16.7 160 6-172 14-179 (181)
95 2x77_A ADP-ribosylation factor 100.0 4E-30 1.4E-34 182.1 11.9 160 6-172 20-185 (189)
96 2wkq_A NPH1-1, RAS-related C3 100.0 1.2E-28 4E-33 188.8 20.3 163 7-171 154-330 (332)
97 1moz_A ARL1, ADP-ribosylation 100.0 4E-29 1.4E-33 175.9 16.2 160 6-172 16-181 (183)
98 2qu8_A Putative nucleolar GTP- 100.0 1E-28 3.5E-33 179.9 17.1 166 6-174 27-208 (228)
99 3llu_A RAS-related GTP-binding 100.0 2.1E-29 7.2E-34 179.5 12.8 161 4-169 16-195 (196)
100 2zej_A Dardarin, leucine-rich 100.0 6.1E-30 2.1E-34 180.5 9.8 164 8-172 2-179 (184)
101 3th5_A RAS-related C3 botulinu 99.9 9.2E-32 3.1E-36 192.8 0.0 162 6-169 28-203 (204)
102 2lkc_A Translation initiation 100.0 1.3E-28 4.4E-33 172.5 15.3 161 5-174 5-174 (178)
103 2wji_A Ferrous iron transport 100.0 1.4E-28 4.9E-33 170.5 13.9 154 7-169 2-163 (165)
104 3c5h_A Glucocorticoid receptor 100.0 2E-29 7E-34 186.4 7.6 165 4-170 15-254 (255)
105 2fh5_B SR-beta, signal recogni 100.0 3.2E-27 1.1E-31 170.3 15.9 160 6-168 5-213 (214)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 2.1E-27 7.3E-32 179.9 15.0 159 7-169 2-179 (307)
107 3o47_A ADP-ribosylation factor 100.0 3.6E-28 1.2E-32 185.7 10.5 159 6-171 163-327 (329)
108 2cxx_A Probable GTP-binding pr 99.9 9.9E-28 3.4E-32 169.6 11.4 158 8-174 1-187 (190)
109 3a1s_A Iron(II) transport prot 99.9 3E-27 1E-31 174.8 14.1 156 6-170 3-166 (258)
110 3lvq_E ARF-GAP with SH3 domain 99.9 1.6E-26 5.5E-31 185.9 19.2 164 6-176 320-489 (497)
111 2wjg_A FEOB, ferrous iron tran 99.9 1.7E-27 5.8E-32 168.3 11.7 159 6-173 5-171 (188)
112 3iev_A GTP-binding protein ERA 99.9 2.8E-26 9.6E-31 173.8 17.4 165 4-173 6-184 (308)
113 1svi_A GTP-binding protein YSX 99.9 2.6E-27 9E-32 168.2 10.9 159 5-170 20-194 (195)
114 3iby_A Ferrous iron transport 99.9 1.8E-27 6.3E-32 175.7 9.6 151 9-168 2-164 (256)
115 2gj8_A MNME, tRNA modification 99.9 2.2E-27 7.7E-32 165.6 9.3 154 7-170 3-165 (172)
116 2dyk_A GTP-binding protein; GT 99.9 1.3E-26 4.4E-31 159.7 12.8 150 9-169 2-160 (161)
117 3k53_A Ferrous iron transport 99.9 1.9E-26 6.5E-31 172.0 12.3 158 7-172 2-167 (271)
118 3b1v_A Ferrous iron uptake tra 99.9 7.2E-27 2.5E-31 173.8 9.8 153 7-169 2-162 (272)
119 3i8s_A Ferrous iron transport 99.9 6.3E-27 2.2E-31 174.7 8.9 155 7-170 2-168 (274)
120 3pqc_A Probable GTP-binding pr 99.9 6.4E-26 2.2E-30 160.9 13.6 157 5-171 20-194 (195)
121 3dpu_A RAB family protein; roc 99.9 6.3E-27 2.2E-31 189.6 9.1 164 5-172 38-209 (535)
122 3r7w_B Gtpase2, GTP-binding pr 99.9 6.9E-27 2.4E-31 176.0 6.7 158 10-174 1-177 (331)
123 1mky_A Probable GTP-binding pr 99.9 5.7E-25 1.9E-29 174.2 14.1 179 9-199 2-195 (439)
124 4dhe_A Probable GTP-binding pr 99.9 1.5E-25 5.2E-30 162.4 9.4 162 6-172 27-212 (223)
125 2e87_A Hypothetical protein PH 99.9 4.2E-24 1.4E-28 165.1 18.0 163 6-173 165-338 (357)
126 3gee_A MNME, tRNA modification 99.9 8E-25 2.7E-29 174.0 14.2 157 7-170 232-397 (476)
127 1wf3_A GTP-binding protein; GT 99.9 1.4E-24 4.7E-29 163.8 14.1 161 1-171 1-173 (301)
128 2hjg_A GTP-binding protein ENG 99.9 5.5E-25 1.9E-29 174.1 11.9 164 6-175 173-353 (436)
129 4dcu_A GTP-binding protein ENG 99.9 1.4E-24 4.9E-29 172.7 12.6 165 6-176 193-374 (456)
130 1nrj_B SR-beta, signal recogni 99.9 1.3E-25 4.5E-30 162.2 5.9 144 5-157 9-170 (218)
131 3qq5_A Small GTP-binding prote 99.9 7.6E-25 2.6E-29 171.5 7.5 160 4-172 30-197 (423)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.3E-24 4.6E-29 166.1 8.2 159 9-172 159-331 (342)
133 1wb1_A Translation elongation 99.9 1.8E-23 6.3E-28 166.9 14.4 158 4-170 15-188 (482)
134 1xzp_A Probable tRNA modificat 99.9 1E-23 3.6E-28 167.7 12.6 153 8-171 243-405 (482)
135 2hjg_A GTP-binding protein ENG 99.9 3.5E-24 1.2E-28 169.6 7.5 178 8-199 3-190 (436)
136 3lxx_A GTPase IMAP family memb 99.9 4.4E-22 1.5E-26 145.8 17.4 165 5-173 26-216 (239)
137 3sjy_A Translation initiation 99.9 1.9E-22 6.5E-27 158.1 16.4 164 4-170 4-191 (403)
138 1ega_A Protein (GTP-binding pr 99.9 1.2E-22 4E-27 153.4 14.3 160 5-171 5-175 (301)
139 1s0u_A EIF-2-gamma, translatio 99.9 2.5E-22 8.5E-27 157.7 16.1 164 5-170 5-197 (408)
140 2qtf_A Protein HFLX, GTP-bindi 99.9 3.9E-22 1.3E-26 153.9 16.6 160 10-172 181-355 (364)
141 3cb4_D GTP-binding protein LEP 99.9 1.4E-22 4.7E-27 164.8 14.2 158 7-170 3-181 (599)
142 2xtp_A GTPase IMAP family memb 99.9 1.7E-22 5.9E-27 149.7 13.4 165 5-173 19-210 (260)
143 3geh_A MNME, tRNA modification 99.9 2E-23 6.7E-28 165.4 8.7 154 7-172 223-385 (462)
144 3j2k_7 ERF3, eukaryotic polype 99.9 2E-22 6.8E-27 159.4 14.3 154 5-163 14-217 (439)
145 2ywe_A GTP-binding protein LEP 99.9 2.8E-22 9.7E-27 162.7 15.3 159 6-170 4-183 (600)
146 1kk1_A EIF2gamma; initiation o 99.9 3.3E-22 1.1E-26 157.1 14.3 164 5-170 7-199 (410)
147 3t5d_A Septin-7; GTP-binding p 99.9 5.3E-23 1.8E-27 153.6 8.6 161 5-169 5-202 (274)
148 3p26_A Elongation factor 1 alp 99.9 1.1E-22 3.9E-27 162.7 11.1 152 6-161 31-228 (483)
149 1cip_A Protein (guanine nucleo 99.9 3.1E-22 1.1E-26 153.5 12.7 125 46-172 184-345 (353)
150 1mky_A Probable GTP-binding pr 99.9 7E-22 2.4E-26 156.5 15.0 163 6-174 178-358 (439)
151 3lxw_A GTPase IMAP family memb 99.9 2E-21 6.9E-26 142.8 15.6 167 6-174 19-211 (247)
152 4dcu_A GTP-binding protein ENG 99.9 3.7E-23 1.3E-27 164.6 6.7 181 5-199 20-210 (456)
153 3izy_P Translation initiation 99.9 1.8E-24 6.2E-29 173.4 -1.8 159 7-170 3-167 (537)
154 3tr5_A RF-3, peptide chain rel 99.9 5.1E-22 1.7E-26 159.8 10.0 117 6-128 11-149 (528)
155 2elf_A Protein translation elo 99.9 9.3E-22 3.2E-26 152.1 10.1 147 10-172 23-181 (370)
156 1zun_B Sulfate adenylate trans 99.9 1.5E-21 5.1E-26 154.4 11.0 153 6-163 22-216 (434)
157 1jny_A EF-1-alpha, elongation 99.9 1.6E-22 5.3E-27 160.0 5.1 155 6-163 4-205 (435)
158 3ohm_A Guanine nucleotide-bind 99.9 4.4E-21 1.5E-25 145.2 12.7 127 45-173 157-320 (327)
159 2qag_A Septin-2, protein NEDD5 99.9 2E-22 7E-27 155.6 5.5 163 6-174 35-236 (361)
160 1zcb_A G alpha I/13; GTP-bindi 99.9 3.8E-21 1.3E-25 148.0 12.4 126 46-173 192-355 (362)
161 1d2e_A Elongation factor TU (E 99.9 3.1E-21 1.1E-25 151.0 11.9 159 7-169 2-193 (397)
162 2c78_A Elongation factor TU-A; 99.9 1.3E-21 4.3E-26 153.6 9.3 146 6-157 9-180 (405)
163 1g7s_A Translation initiation 99.9 8.5E-21 2.9E-25 154.4 14.3 161 6-173 3-220 (594)
164 2ged_A SR-beta, signal recogni 99.9 1.6E-21 5.5E-26 138.1 8.5 115 6-129 46-172 (193)
165 2xtz_A Guanine nucleotide-bind 99.9 4.2E-21 1.4E-25 147.2 11.3 119 55-173 181-347 (354)
166 1r5b_A Eukaryotic peptide chai 99.8 4.5E-22 1.5E-26 158.5 5.7 155 6-162 41-243 (467)
167 3izq_1 HBS1P, elongation facto 99.8 1.4E-21 4.7E-26 159.8 8.4 155 6-162 165-363 (611)
168 1zo1_I IF2, translation initia 99.8 2.4E-23 8.2E-28 165.7 -2.2 156 6-167 2-163 (501)
169 1f60_A Elongation factor EEF1A 99.8 1.3E-21 4.5E-26 155.4 6.0 155 1-161 1-202 (458)
170 2aka_B Dynamin-1; fusion prote 99.8 7.2E-21 2.5E-25 143.6 7.7 161 6-170 24-252 (299)
171 1pui_A ENGB, probable GTP-bind 99.8 3.5E-20 1.2E-24 132.9 9.9 157 6-171 24-199 (210)
172 3avx_A Elongation factor TS, e 99.8 1.9E-20 6.4E-25 159.4 9.6 161 5-169 293-484 (1289)
173 4fid_A G protein alpha subunit 99.8 6.7E-20 2.3E-24 139.2 11.5 124 46-171 152-328 (340)
174 3def_A T7I23.11 protein; chlor 99.8 3.3E-19 1.1E-23 132.2 14.6 124 6-132 34-170 (262)
175 1udx_A The GTP-binding protein 99.8 2.3E-19 8E-24 140.1 13.4 161 10-174 159-328 (416)
176 3mca_A HBS1, elongation factor 99.8 6.8E-21 2.3E-25 155.3 3.8 149 6-159 175-371 (592)
177 1dar_A EF-G, elongation factor 99.8 6.7E-19 2.3E-23 146.0 15.3 119 3-127 7-143 (691)
178 2j69_A Bacterial dynamin-like 99.8 5.9E-19 2E-23 146.5 13.6 163 7-172 68-326 (695)
179 2h5e_A Peptide chain release f 99.8 2E-18 7E-23 139.0 16.2 116 6-127 11-148 (529)
180 3t34_A Dynamin-related protein 99.8 8.5E-20 2.9E-24 141.2 7.0 159 7-167 33-257 (360)
181 1jwy_B Dynamin A GTPase domain 99.8 5.6E-19 1.9E-23 134.3 10.6 112 57-171 131-262 (315)
182 2dy1_A Elongation factor G; tr 99.8 9.5E-19 3.3E-23 144.6 12.7 115 6-126 7-139 (665)
183 1h65_A Chloroplast outer envel 99.8 5.6E-18 1.9E-22 126.1 14.6 125 6-133 37-174 (270)
184 1wxq_A GTP-binding protein; st 99.8 4.7E-19 1.6E-23 138.1 7.2 85 9-93 1-114 (397)
185 2xex_A Elongation factor G; GT 99.8 1.3E-17 4.5E-22 138.4 15.8 117 6-128 8-142 (693)
186 2qnr_A Septin-2, protein NEDD5 99.8 3.9E-19 1.3E-23 134.1 5.5 163 6-173 16-216 (301)
187 2rdo_7 EF-G, elongation factor 99.8 3.7E-17 1.3E-21 135.8 17.6 119 5-127 7-148 (704)
188 1u0l_A Probable GTPase ENGC; p 99.7 1.8E-18 6E-23 130.6 6.8 133 23-166 32-168 (301)
189 2qag_C Septin-7; cell cycle, c 99.7 4.3E-18 1.5E-22 133.1 8.9 159 6-169 29-225 (418)
190 3vqt_A RF-3, peptide chain rel 99.7 1.3E-16 4.6E-21 129.0 15.1 116 7-128 30-167 (548)
191 1jal_A YCHF protein; nucleotid 99.7 1.7E-16 5.8E-21 121.6 14.3 145 9-153 3-239 (363)
192 1azs_C GS-alpha; complex (lyas 99.7 3.8E-17 1.3E-21 126.8 10.7 126 46-173 208-387 (402)
193 2wsm_A Hydrogenase expression/ 99.7 6.8E-18 2.3E-22 121.9 6.1 156 7-173 29-216 (221)
194 2x2e_A Dynamin-1; nitration, h 99.7 2.8E-18 9.7E-23 132.3 1.7 158 7-167 30-254 (353)
195 3p32_A Probable GTPase RV1496/ 99.7 1E-17 3.5E-22 129.2 4.3 104 57-172 172-285 (355)
196 4a9a_A Ribosome-interacting GT 99.7 3.1E-15 1.1E-19 115.2 15.0 154 7-163 71-240 (376)
197 2hf9_A Probable hydrogenase ni 99.7 1.5E-16 5E-21 115.3 6.9 155 7-172 37-225 (226)
198 1n0u_A EF-2, elongation factor 99.6 5.7E-16 1.9E-20 131.0 9.0 117 6-126 17-163 (842)
199 2dby_A GTP-binding protein; GD 99.6 1.7E-15 5.8E-20 116.7 10.6 153 9-161 2-252 (368)
200 2qpt_A EH domain-containing pr 99.6 3.1E-16 1E-20 127.0 6.6 122 5-129 62-234 (550)
201 2www_A Methylmalonic aciduria 99.6 2E-16 6.7E-21 121.6 4.4 103 57-171 167-279 (349)
202 3j25_A Tetracycline resistance 99.6 3.7E-16 1.3E-20 128.7 4.1 114 8-127 2-133 (638)
203 2p67_A LAO/AO transport system 99.6 8.6E-16 2.9E-20 117.8 5.4 105 57-172 149-262 (341)
204 4fn5_A EF-G 1, elongation fact 99.6 3.3E-14 1.1E-18 118.5 14.7 117 6-126 11-150 (709)
205 3zvr_A Dynamin-1; hydrolase, D 99.6 3.6E-15 1.2E-19 123.6 7.9 159 6-168 49-275 (772)
206 1yrb_A ATP(GTP)binding protein 99.5 3.5E-14 1.2E-18 105.0 10.8 112 57-171 109-257 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 5.2E-14 1.8E-18 107.6 9.6 103 57-170 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.5 1.7E-13 5.8E-18 103.3 9.0 96 67-165 66-163 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.3E-12 7.9E-17 99.9 14.2 86 7-92 19-127 (392)
210 3l82_B F-box only protein 4; T 99.4 1.4E-13 4.9E-18 96.6 3.9 106 65-173 110-225 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 3.6E-13 1.2E-17 104.2 5.4 87 7-93 21-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 4.6E-12 1.6E-16 93.2 6.1 108 64-173 194-310 (312)
213 3h2y_A GTPase family protein; 99.2 4.2E-11 1.4E-15 92.6 6.7 97 66-169 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.1 5.4E-12 1.9E-16 97.6 -0.6 140 9-158 163-318 (369)
215 1puj_A YLQF, conserved hypothe 99.1 4.8E-11 1.6E-15 89.0 4.4 127 62-198 4-134 (282)
216 2qag_B Septin-6, protein NEDD5 99.1 2.5E-10 8.5E-15 89.2 8.0 141 7-152 41-217 (427)
217 2j37_W Signal recognition part 99.1 1.9E-10 6.4E-15 91.9 6.4 151 7-168 100-310 (504)
218 3ec1_A YQEH GTPase; atnos1, at 99.0 1.2E-10 4.1E-15 90.1 4.5 113 66-198 57-176 (369)
219 3sop_A Neuronal-specific septi 99.0 6E-10 2.1E-14 82.5 7.0 136 8-149 2-178 (270)
220 3h2y_A GTPase family protein; 99.0 1.4E-11 4.9E-16 95.2 -2.5 134 9-152 161-311 (368)
221 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4E-13 79.7 11.6 157 8-173 69-255 (413)
222 1puj_A YLQF, conserved hypothe 98.6 2.8E-08 9.5E-13 74.1 4.9 58 6-68 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 3.5E-09 1.2E-13 78.1 -0.0 93 65-168 5-98 (262)
224 3dm5_A SRP54, signal recogniti 98.6 6.7E-08 2.3E-12 75.9 6.6 90 57-158 183-278 (443)
225 2v3c_C SRP54, signal recogniti 98.6 7.3E-08 2.5E-12 75.9 5.4 83 57-150 181-271 (432)
226 3cnl_A YLQF, putative uncharac 98.5 2.9E-08 9.8E-13 73.2 2.7 56 9-69 100-156 (262)
227 1t9h_A YLOQ, probable GTPase E 98.4 1.2E-07 4E-12 71.3 3.8 90 72-164 78-170 (307)
228 1f5n_A Interferon-induced guan 98.4 1.8E-07 6.3E-12 76.1 4.8 64 6-69 36-103 (592)
229 3kl4_A SRP54, signal recogniti 98.4 8.7E-08 3E-12 75.2 2.5 90 57-158 180-277 (433)
230 3szr_A Interferon-induced GTP- 98.3 1.6E-06 5.5E-11 71.2 7.6 26 9-34 46-71 (608)
231 1j8m_F SRP54, signal recogniti 98.2 2.6E-06 8.8E-11 63.9 7.1 91 57-160 181-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.2 4.9E-06 1.7E-10 63.7 8.1 84 77-164 127-212 (358)
233 3e70_C DPA, signal recognition 98.1 1.2E-05 4.2E-10 61.0 7.7 91 58-160 213-309 (328)
234 3q5d_A Atlastin-1; G protein, 97.9 1.3E-05 4.5E-10 63.2 5.0 26 6-31 65-90 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.8 1E-06 3.6E-11 70.2 -2.6 109 7-120 38-156 (469)
236 1ye8_A Protein THEP1, hypothet 97.6 3.7E-05 1.3E-09 53.2 2.9 23 9-31 1-23 (178)
237 1lvg_A Guanylate kinase, GMP k 97.5 3.6E-05 1.2E-09 54.2 2.3 22 9-30 5-26 (198)
238 1knq_A Gluconate kinase; ALFA/ 97.5 6.8E-05 2.3E-09 51.4 3.3 30 1-30 1-30 (175)
239 2xxa_A Signal recognition part 97.5 0.00068 2.3E-08 53.4 9.1 83 57-150 184-273 (433)
240 1kgd_A CASK, peripheral plasma 97.5 6E-05 2.1E-09 52.1 2.7 22 10-31 7-28 (180)
241 1t9h_A YLOQ, probable GTPase E 97.4 4.3E-05 1.5E-09 57.4 1.0 23 10-32 175-197 (307)
242 1zp6_A Hypothetical protein AT 97.3 0.00011 3.8E-09 51.0 3.0 23 9-31 10-32 (191)
243 3tr0_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 51.8 2.7 22 10-31 9-30 (205)
244 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 51.1 2.6 21 11-31 4-24 (186)
245 4gp7_A Metallophosphoesterase; 97.3 0.00013 4.5E-09 49.9 2.8 20 10-29 11-30 (171)
246 1znw_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 51.6 2.7 22 10-31 22-43 (207)
247 1z6g_A Guanylate kinase; struc 97.3 0.00014 4.7E-09 51.9 2.7 23 10-32 25-47 (218)
248 1s96_A Guanylate kinase, GMP k 97.2 0.00015 5E-09 51.9 2.7 24 9-32 17-40 (219)
249 2yv5_A YJEQ protein; hydrolase 97.2 0.0005 1.7E-08 51.6 5.7 22 10-32 167-188 (302)
250 3c8u_A Fructokinase; YP_612366 97.2 0.00015 5.2E-09 51.2 2.7 25 7-31 21-45 (208)
251 2wwf_A Thymidilate kinase, put 97.2 0.00023 7.8E-09 50.3 3.6 30 1-30 3-32 (212)
252 1uf9_A TT1252 protein; P-loop, 97.2 0.00021 7.2E-09 50.0 3.4 31 1-31 1-31 (203)
253 3asz_A Uridine kinase; cytidin 97.2 0.00019 6.6E-09 50.7 3.0 24 7-30 5-28 (211)
254 3ney_A 55 kDa erythrocyte memb 97.2 0.0002 6.9E-09 50.2 3.0 23 9-31 20-42 (197)
255 2rhm_A Putative kinase; P-loop 97.2 0.00028 9.7E-09 48.9 3.8 22 9-30 6-27 (193)
256 3tau_A Guanylate kinase, GMP k 97.2 0.00018 6.2E-09 50.9 2.7 24 9-32 9-32 (208)
257 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.6E-09 48.9 2.8 23 9-31 5-27 (173)
258 1ex7_A Guanylate kinase; subst 97.2 0.00022 7.5E-09 49.6 3.0 21 11-31 4-24 (186)
259 2qor_A Guanylate kinase; phosp 97.2 0.00023 7.9E-09 50.1 3.1 22 9-30 13-34 (204)
260 3tif_A Uncharacterized ABC tra 97.2 0.00026 9E-09 51.1 3.5 23 10-32 33-55 (235)
261 1cke_A CK, MSSA, protein (cyti 97.2 0.00028 9.5E-09 50.4 3.5 22 9-30 6-27 (227)
262 2pcj_A ABC transporter, lipopr 97.1 0.00024 8.3E-09 50.9 3.0 23 10-32 32-54 (224)
263 1htw_A HI0065; nucleotide-bind 97.1 0.00023 7.8E-09 48.2 2.7 23 10-32 35-57 (158)
264 2rcn_A Probable GTPase ENGC; Y 97.1 0.00024 8.3E-09 54.4 3.1 24 10-33 217-240 (358)
265 3lw7_A Adenylate kinase relate 97.1 0.00028 9.4E-09 48.0 3.1 20 9-28 2-21 (179)
266 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 49.0 3.7 23 9-31 5-27 (204)
267 3cm0_A Adenylate kinase; ATP-b 97.1 0.0003 1E-08 48.6 3.3 22 9-30 5-26 (186)
268 2j41_A Guanylate kinase; GMP, 97.1 0.00023 8E-09 50.0 2.7 24 9-32 7-30 (207)
269 3fb4_A Adenylate kinase; psych 97.1 0.00028 9.7E-09 50.0 3.1 21 9-29 1-21 (216)
270 3kb2_A SPBC2 prophage-derived 97.1 0.00029 9.9E-09 47.9 3.0 21 10-30 3-23 (173)
271 2bdt_A BH3686; alpha-beta prot 97.1 0.0003 1E-08 48.8 3.0 21 10-30 4-24 (189)
272 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 49.9 3.1 22 9-30 1-22 (216)
273 1ly1_A Polynucleotide kinase; 97.1 0.00037 1.3E-08 47.7 3.4 22 9-30 3-24 (181)
274 3gfo_A Cobalt import ATP-bindi 97.1 0.00031 1.1E-08 51.9 3.1 22 11-32 37-58 (275)
275 2bbw_A Adenylate kinase 4, AK4 97.1 0.00036 1.2E-08 50.6 3.4 21 9-29 28-48 (246)
276 2cbz_A Multidrug resistance-as 97.1 0.00032 1.1E-08 50.8 3.0 23 10-32 33-55 (237)
277 1b0u_A Histidine permease; ABC 97.1 0.00032 1.1E-08 51.5 3.1 23 10-32 34-56 (262)
278 2onk_A Molybdate/tungstate ABC 97.1 0.0004 1.4E-08 50.3 3.5 23 10-32 26-48 (240)
279 4eun_A Thermoresistant glucoki 97.1 0.00029 9.8E-09 49.5 2.7 22 9-30 30-51 (200)
280 4g1u_C Hemin import ATP-bindin 97.1 0.00046 1.6E-08 50.8 3.8 23 10-32 39-61 (266)
281 3tlx_A Adenylate kinase 2; str 97.0 0.0005 1.7E-08 49.9 4.0 24 7-30 28-51 (243)
282 1sgw_A Putative ABC transporte 97.0 0.00043 1.5E-08 49.2 3.5 22 11-32 38-59 (214)
283 1u0l_A Probable GTPase ENGC; p 97.0 0.00042 1.4E-08 51.9 3.5 24 10-33 171-194 (301)
284 1mv5_A LMRA, multidrug resista 97.0 0.00054 1.9E-08 49.7 4.0 23 10-32 30-52 (243)
285 1vht_A Dephospho-COA kinase; s 97.0 0.00052 1.8E-08 48.7 3.8 22 9-30 5-26 (218)
286 2olj_A Amino acid ABC transpor 97.0 0.00038 1.3E-08 51.1 3.1 23 10-32 52-74 (263)
287 2if2_A Dephospho-COA kinase; a 97.0 0.00036 1.2E-08 49.0 2.8 22 9-30 2-23 (204)
288 2i3b_A HCR-ntpase, human cance 97.0 0.00031 1.1E-08 49.0 2.4 22 10-31 3-24 (189)
289 1g6h_A High-affinity branched- 97.0 0.00048 1.6E-08 50.4 3.5 23 10-32 35-57 (257)
290 3sr0_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 48.9 3.1 22 9-30 1-22 (206)
291 2pze_A Cystic fibrosis transme 97.0 0.0005 1.7E-08 49.4 3.5 23 10-32 36-58 (229)
292 1qhx_A CPT, protein (chloramph 97.0 0.00041 1.4E-08 47.5 2.9 22 9-30 4-25 (178)
293 2eyu_A Twitching motility prot 97.0 0.00034 1.2E-08 51.3 2.7 22 10-31 27-48 (261)
294 2ff7_A Alpha-hemolysin translo 97.0 0.00054 1.8E-08 49.9 3.7 23 10-32 37-59 (247)
295 1nks_A Adenylate kinase; therm 97.0 0.00047 1.6E-08 47.7 3.3 22 9-30 2-23 (194)
296 2cdn_A Adenylate kinase; phosp 97.0 0.00048 1.7E-08 48.3 3.4 25 6-30 18-42 (201)
297 2v9p_A Replication protein E1; 97.0 0.00037 1.3E-08 52.2 2.9 22 10-31 128-149 (305)
298 1vpl_A ABC transporter, ATP-bi 97.0 0.00052 1.8E-08 50.2 3.5 23 10-32 43-65 (256)
299 1ji0_A ABC transporter; ATP bi 97.0 0.00051 1.8E-08 49.7 3.5 23 10-32 34-56 (240)
300 2qi9_C Vitamin B12 import ATP- 97.0 0.00044 1.5E-08 50.4 3.1 23 10-32 28-50 (249)
301 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00043 1.5E-08 50.4 3.0 22 10-31 31-52 (250)
302 1jjv_A Dephospho-COA kinase; P 97.0 0.00055 1.9E-08 48.1 3.5 22 9-30 3-24 (206)
303 2ghi_A Transport protein; mult 97.0 0.00049 1.7E-08 50.5 3.3 23 10-32 48-70 (260)
304 1y63_A LMAJ004144AAA protein; 97.0 0.00051 1.7E-08 47.5 3.2 25 7-31 9-33 (184)
305 1np6_A Molybdopterin-guanine d 97.0 0.00048 1.6E-08 47.3 3.0 24 8-31 6-29 (174)
306 3vaa_A Shikimate kinase, SK; s 97.0 0.00051 1.7E-08 48.1 3.2 22 9-30 26-47 (199)
307 3b85_A Phosphate starvation-in 96.9 0.00033 1.1E-08 49.6 2.2 22 10-31 24-45 (208)
308 2zu0_C Probable ATP-dependent 96.9 0.00048 1.6E-08 50.7 3.1 22 10-31 48-69 (267)
309 1kht_A Adenylate kinase; phosp 96.9 0.0005 1.7E-08 47.6 3.1 22 9-30 4-25 (192)
310 3t61_A Gluconokinase; PSI-biol 96.9 0.00045 1.5E-08 48.4 2.9 22 9-30 19-40 (202)
311 3ec2_A DNA replication protein 96.9 0.00034 1.2E-08 48.1 2.2 23 9-31 39-61 (180)
312 2qt1_A Nicotinamide riboside k 96.9 0.00073 2.5E-08 47.6 3.9 26 6-31 19-44 (207)
313 1aky_A Adenylate kinase; ATP:A 96.9 0.0005 1.7E-08 48.9 3.1 24 7-30 3-26 (220)
314 1e4v_A Adenylate kinase; trans 96.9 0.00049 1.7E-08 48.8 3.0 22 9-30 1-22 (214)
315 2jaq_A Deoxyguanosine kinase; 96.9 0.00051 1.7E-08 48.0 3.1 21 10-30 2-22 (205)
316 1tev_A UMP-CMP kinase; ploop, 96.9 0.00059 2E-08 47.3 3.4 23 8-30 3-25 (196)
317 1qf9_A UMP/CMP kinase, protein 96.9 0.00075 2.6E-08 46.7 3.8 28 1-30 1-28 (194)
318 1nn5_A Similar to deoxythymidy 96.9 0.00061 2.1E-08 48.1 3.4 23 8-30 9-31 (215)
319 2ixe_A Antigen peptide transpo 96.9 0.00061 2.1E-08 50.3 3.5 23 10-32 47-69 (271)
320 2ihy_A ABC transporter, ATP-bi 96.9 0.0007 2.4E-08 50.2 3.7 23 10-32 49-71 (279)
321 3uie_A Adenylyl-sulfate kinase 96.9 0.00047 1.6E-08 48.4 2.7 23 8-30 25-47 (200)
322 2yz2_A Putative ABC transporte 96.9 0.00053 1.8E-08 50.5 3.0 23 10-32 35-57 (266)
323 2plr_A DTMP kinase, probable t 96.9 0.00066 2.3E-08 47.8 3.5 22 9-30 5-26 (213)
324 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0007 2.4E-08 49.6 3.7 22 9-30 5-26 (260)
325 2c95_A Adenylate kinase 1; tra 96.9 0.00053 1.8E-08 47.7 2.9 22 9-30 10-31 (196)
326 3lnc_A Guanylate kinase, GMP k 96.9 0.00031 1E-08 50.5 1.7 22 10-31 29-51 (231)
327 3aez_A Pantothenate kinase; tr 96.9 0.00047 1.6E-08 52.0 2.7 26 6-31 88-113 (312)
328 2nq2_C Hypothetical ABC transp 96.9 0.00067 2.3E-08 49.5 3.4 23 10-32 33-55 (253)
329 3iij_A Coilin-interacting nucl 96.9 0.00059 2E-08 46.9 2.9 23 7-29 10-32 (180)
330 2ehv_A Hypothetical protein PH 96.9 0.00059 2E-08 49.3 3.0 20 10-29 32-51 (251)
331 2pt5_A Shikimate kinase, SK; a 96.9 0.00066 2.3E-08 46.0 3.1 21 10-30 2-22 (168)
332 2pjz_A Hypothetical protein ST 96.9 0.00077 2.6E-08 49.5 3.6 23 10-32 32-54 (263)
333 4a74_A DNA repair and recombin 96.8 0.00053 1.8E-08 48.9 2.6 22 10-31 27-48 (231)
334 3trf_A Shikimate kinase, SK; a 96.8 0.0007 2.4E-08 46.7 3.1 22 9-30 6-27 (185)
335 2f1r_A Molybdopterin-guanine d 96.8 0.00029 9.9E-09 48.3 1.1 22 10-31 4-25 (171)
336 1zd8_A GTP:AMP phosphotransfer 96.8 0.00065 2.2E-08 48.6 3.0 22 8-29 7-28 (227)
337 3be4_A Adenylate kinase; malar 96.8 0.00064 2.2E-08 48.3 2.9 24 7-30 4-27 (217)
338 3nh6_A ATP-binding cassette SU 96.8 0.00048 1.6E-08 51.7 2.2 23 10-32 82-104 (306)
339 2yvu_A Probable adenylyl-sulfa 96.8 0.001 3.4E-08 46.0 3.7 24 7-30 12-35 (186)
340 1xjc_A MOBB protein homolog; s 96.8 0.0009 3.1E-08 45.7 3.1 23 8-30 4-26 (169)
341 1lw7_A Transcriptional regulat 96.8 0.00059 2E-08 52.6 2.5 25 8-32 170-194 (365)
342 2xb4_A Adenylate kinase; ATP-b 96.8 0.00082 2.8E-08 48.0 3.1 22 9-30 1-22 (223)
343 2jeo_A Uridine-cytidine kinase 96.8 0.00069 2.3E-08 49.1 2.7 23 8-30 25-47 (245)
344 1gvn_B Zeta; postsegregational 96.8 0.001 3.5E-08 49.5 3.6 24 7-30 32-55 (287)
345 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00092 3.1E-08 51.3 3.4 23 11-33 33-55 (359)
346 1via_A Shikimate kinase; struc 96.8 0.00071 2.4E-08 46.3 2.6 21 10-30 6-26 (175)
347 2bbs_A Cystic fibrosis transme 96.8 0.00087 3E-08 49.9 3.2 23 10-32 66-88 (290)
348 3jvv_A Twitching mobility prot 96.7 0.00069 2.4E-08 52.0 2.7 21 10-30 125-145 (356)
349 1zak_A Adenylate kinase; ATP:A 96.7 0.00066 2.3E-08 48.4 2.4 23 8-30 5-27 (222)
350 2kjq_A DNAA-related protein; s 96.7 0.00055 1.9E-08 45.7 1.9 23 10-32 38-60 (149)
351 1ukz_A Uridylate kinase; trans 96.7 0.0011 3.8E-08 46.4 3.5 24 7-30 14-37 (203)
352 2x8a_A Nuclear valosin-contain 96.7 0.00077 2.6E-08 49.8 2.7 21 11-31 47-67 (274)
353 3tui_C Methionine import ATP-b 96.7 0.0011 3.8E-08 50.9 3.5 22 11-32 57-78 (366)
354 3tqc_A Pantothenate kinase; bi 96.7 0.0011 3.8E-08 50.1 3.5 25 6-30 90-114 (321)
355 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00088 3E-08 50.9 2.9 23 10-32 173-195 (330)
356 2pbr_A DTMP kinase, thymidylat 96.7 0.001 3.5E-08 46.1 3.0 21 10-30 2-22 (195)
357 1z47_A CYSA, putative ABC-tran 96.7 0.0011 3.9E-08 50.7 3.5 22 11-32 44-65 (355)
358 2gza_A Type IV secretion syste 96.7 0.00091 3.1E-08 51.5 2.9 23 10-32 177-199 (361)
359 1odf_A YGR205W, hypothetical 3 96.7 0.0013 4.5E-08 49.0 3.7 25 6-30 29-53 (290)
360 3co5_A Putative two-component 96.7 0.0032 1.1E-07 41.6 5.2 23 9-31 28-50 (143)
361 3umf_A Adenylate kinase; rossm 96.7 0.0011 3.9E-08 47.1 3.2 20 11-30 32-51 (217)
362 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.9E-08 47.6 3.2 24 7-30 15-38 (233)
363 3rlf_A Maltose/maltodextrin im 96.6 0.0013 4.4E-08 50.8 3.5 22 11-32 32-53 (381)
364 2yyz_A Sugar ABC transporter, 96.6 0.0013 4.4E-08 50.5 3.5 22 11-32 32-53 (359)
365 2it1_A 362AA long hypothetical 96.6 0.0013 4.4E-08 50.5 3.5 22 11-32 32-53 (362)
366 1ixz_A ATP-dependent metallopr 96.6 0.00098 3.3E-08 48.5 2.7 21 11-31 52-72 (254)
367 2vli_A Antibiotic resistance p 96.6 0.00078 2.7E-08 46.3 2.0 23 8-30 5-27 (183)
368 2ewv_A Twitching motility prot 96.6 0.001 3.5E-08 51.4 2.9 21 10-30 138-158 (372)
369 2bwj_A Adenylate kinase 5; pho 96.6 0.0012 4.2E-08 45.9 3.1 22 9-30 13-34 (199)
370 2z0h_A DTMP kinase, thymidylat 96.6 0.0012 4.3E-08 45.8 3.1 21 10-30 2-22 (197)
371 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.2E-08 44.8 2.9 21 10-30 4-24 (173)
372 1rz3_A Hypothetical protein rb 96.6 0.0013 4.3E-08 46.2 3.1 24 7-30 21-44 (201)
373 1rj9_A FTSY, signal recognitio 96.6 0.001 3.5E-08 49.9 2.7 23 8-30 102-124 (304)
374 1sq5_A Pantothenate kinase; P- 96.6 0.0014 4.8E-08 49.3 3.5 24 7-30 79-102 (308)
375 1v43_A Sugar-binding transport 96.6 0.0014 4.9E-08 50.5 3.5 23 10-32 39-61 (372)
376 2p5t_B PEZT; postsegregational 96.6 0.0011 3.6E-08 48.4 2.7 25 6-30 30-54 (253)
377 1gtv_A TMK, thymidylate kinase 96.6 0.00046 1.6E-08 48.7 0.8 21 10-30 2-22 (214)
378 1g29_1 MALK, maltose transport 96.6 0.0014 4.8E-08 50.6 3.5 23 11-33 32-54 (372)
379 1uj2_A Uridine-cytidine kinase 96.6 0.0014 4.8E-08 47.7 3.3 25 6-30 20-44 (252)
380 2ze6_A Isopentenyl transferase 96.6 0.0012 4.2E-08 48.1 2.9 21 10-30 3-23 (253)
381 4e22_A Cytidylate kinase; P-lo 96.6 0.0014 4.6E-08 47.8 3.2 21 9-29 28-48 (252)
382 2oap_1 GSPE-2, type II secreti 96.6 0.0012 4.1E-08 53.1 3.0 23 10-32 262-284 (511)
383 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.5E-08 45.2 2.9 21 10-30 4-24 (184)
384 3b9q_A Chloroplast SRP recepto 96.6 0.0012 4E-08 49.6 2.7 22 9-30 101-122 (302)
385 3r20_A Cytidylate kinase; stru 96.5 0.0014 5E-08 47.1 3.1 24 7-30 8-31 (233)
386 1p9r_A General secretion pathw 96.5 0.0011 3.9E-08 51.9 2.7 22 10-31 169-190 (418)
387 1jbk_A CLPB protein; beta barr 96.5 0.0017 5.8E-08 44.5 3.2 23 9-31 44-66 (195)
388 2vp4_A Deoxynucleoside kinase; 96.5 0.0011 3.8E-08 47.6 2.3 25 7-31 19-43 (230)
389 3gd7_A Fusion complex of cysti 96.5 0.0014 4.8E-08 50.9 3.0 22 10-31 49-70 (390)
390 3d31_A Sulfate/molybdate ABC t 96.5 0.0012 4E-08 50.6 2.5 23 10-32 28-50 (348)
391 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6E-08 43.9 3.2 23 8-30 7-29 (168)
392 2pez_A Bifunctional 3'-phospho 96.5 0.0016 5.5E-08 44.6 2.9 22 9-30 6-27 (179)
393 3gmt_A Adenylate kinase; ssgci 96.5 0.0018 6E-08 46.5 3.2 29 2-30 2-30 (230)
394 1iy2_A ATP-dependent metallopr 96.5 0.0014 4.9E-08 48.3 2.7 21 11-31 76-96 (278)
395 1in4_A RUVB, holliday junction 96.5 0.0014 4.8E-08 49.8 2.7 22 10-31 53-74 (334)
396 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0074 2.5E-07 47.6 6.7 24 6-29 65-88 (457)
397 3kta_A Chromosome segregation 96.4 0.0018 6.2E-08 44.4 3.0 21 10-30 28-48 (182)
398 2f6r_A COA synthase, bifunctio 96.4 0.0019 6.5E-08 47.9 3.2 23 7-29 74-96 (281)
399 2grj_A Dephospho-COA kinase; T 96.4 0.0026 9E-08 44.3 3.6 25 6-30 10-34 (192)
400 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0019 6.5E-08 46.0 3.0 21 10-30 25-45 (235)
401 1oxx_K GLCV, glucose, ABC tran 96.4 0.0011 3.9E-08 50.7 1.7 23 10-32 33-55 (353)
402 1lv7_A FTSH; alpha/beta domain 96.3 0.002 6.7E-08 46.9 2.7 22 9-30 46-67 (257)
403 1nij_A Hypothetical protein YJ 96.3 0.0021 7E-08 48.6 2.9 25 8-32 4-28 (318)
404 2og2_A Putative signal recogni 96.3 0.0019 6.6E-08 49.5 2.7 22 9-30 158-179 (359)
405 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0018 6.3E-08 51.4 2.6 22 10-31 140-161 (460)
406 1cr0_A DNA primase/helicase; R 96.3 0.0019 6.6E-08 48.1 2.6 22 10-31 37-58 (296)
407 1m7g_A Adenylylsulfate kinase; 96.3 0.0023 7.8E-08 45.2 2.9 23 8-30 25-47 (211)
408 3uc9_A Increased recombination 96.3 0.0011 3.8E-08 47.2 1.1 25 8-32 29-53 (233)
409 4eaq_A DTMP kinase, thymidylat 96.3 0.0038 1.3E-07 44.8 3.9 25 7-31 25-49 (229)
410 2yhs_A FTSY, cell division pro 96.3 0.0021 7.2E-08 51.3 2.7 92 57-160 376-479 (503)
411 4dzz_A Plasmid partitioning pr 96.3 0.0059 2E-07 42.6 4.9 85 57-148 76-162 (206)
412 2p65_A Hypothetical protein PF 96.2 0.0021 7.1E-08 43.9 2.4 22 9-30 44-65 (187)
413 2cvh_A DNA repair and recombin 96.2 0.0024 8.1E-08 45.1 2.7 21 10-30 22-42 (220)
414 2obl_A ESCN; ATPase, hydrolase 96.2 0.0025 8.5E-08 48.7 2.9 23 10-32 73-95 (347)
415 1ltq_A Polynucleotide kinase; 96.2 0.0026 8.9E-08 47.4 2.9 22 9-30 3-24 (301)
416 3bos_A Putative DNA replicatio 96.2 0.003 1E-07 45.1 3.2 23 8-30 52-74 (242)
417 1n0w_A DNA repair protein RAD5 96.2 0.0025 8.5E-08 45.8 2.7 22 10-31 26-47 (243)
418 3nwj_A ATSK2; P loop, shikimat 96.2 0.0027 9.2E-08 46.2 2.9 22 9-30 49-70 (250)
419 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0032 1.1E-07 41.9 3.0 19 11-29 26-44 (149)
420 2w58_A DNAI, primosome compone 96.2 0.0034 1.2E-07 43.8 3.2 23 9-31 55-77 (202)
421 1svm_A Large T antigen; AAA+ f 96.1 0.0027 9.1E-08 49.1 2.7 22 9-30 170-191 (377)
422 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0045 1.5E-07 50.2 4.0 23 10-32 49-71 (538)
423 3b60_A Lipid A export ATP-bind 96.1 0.004 1.4E-07 51.0 3.7 23 10-32 371-393 (582)
424 3n70_A Transport activator; si 96.1 0.0037 1.3E-07 41.3 2.9 23 9-31 25-47 (145)
425 3b5x_A Lipid A export ATP-bind 96.1 0.0045 1.5E-07 50.7 3.8 23 10-32 371-393 (582)
426 3cwq_A Para family chromosome 96.0 0.042 1.4E-06 38.6 8.4 86 56-148 67-153 (209)
427 3ozx_A RNAse L inhibitor; ATP 96.0 0.0046 1.6E-07 50.1 3.8 24 10-33 27-50 (538)
428 1tue_A Replication protein E1; 96.0 0.0031 1.1E-07 44.3 2.4 21 10-30 60-80 (212)
429 3euj_A Chromosome partition pr 96.0 0.0032 1.1E-07 50.2 2.7 21 10-30 31-51 (483)
430 3j16_B RLI1P; ribosome recycli 96.0 0.0049 1.7E-07 50.7 3.8 24 10-33 105-128 (608)
431 1p5z_B DCK, deoxycytidine kina 96.0 0.0033 1.1E-07 46.0 2.4 26 6-31 22-47 (263)
432 2dpy_A FLII, flagellum-specifi 95.9 0.004 1.4E-07 49.2 2.9 23 10-32 159-181 (438)
433 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0043 1.5E-07 45.1 2.9 22 9-30 40-61 (262)
434 3b9p_A CG5977-PA, isoform A; A 95.9 0.004 1.4E-07 46.2 2.8 23 8-30 54-76 (297)
435 3ake_A Cytidylate kinase; CMP 95.9 0.0049 1.7E-07 43.1 3.1 21 10-30 4-24 (208)
436 3h4m_A Proteasome-activating n 95.9 0.0041 1.4E-07 45.9 2.8 24 8-31 51-74 (285)
437 1njg_A DNA polymerase III subu 95.9 0.0045 1.5E-07 44.0 2.9 21 10-30 47-67 (250)
438 2yl4_A ATP-binding cassette SU 95.9 0.0042 1.4E-07 51.0 3.0 23 10-32 372-394 (595)
439 3bk7_A ABC transporter ATP-bin 95.9 0.0062 2.1E-07 50.1 4.0 23 10-32 119-141 (607)
440 2chg_A Replication factor C sm 95.9 0.0047 1.6E-07 43.3 3.0 21 10-30 40-60 (226)
441 1nlf_A Regulatory protein REPA 95.9 0.004 1.4E-07 46.0 2.6 21 10-30 32-52 (279)
442 3qf4_B Uncharacterized ABC tra 95.9 0.0046 1.6E-07 50.8 3.2 23 10-32 383-405 (598)
443 4a82_A Cystic fibrosis transme 95.9 0.0039 1.3E-07 51.0 2.7 23 10-32 369-391 (578)
444 3zvl_A Bifunctional polynucleo 95.9 0.0045 1.5E-07 48.6 3.0 23 8-30 258-280 (416)
445 3foz_A TRNA delta(2)-isopenten 95.9 0.0062 2.1E-07 45.6 3.6 23 8-30 10-32 (316)
446 3ozx_A RNAse L inhibitor; ATP 95.9 0.0061 2.1E-07 49.4 3.7 24 10-33 296-319 (538)
447 3cf0_A Transitional endoplasmi 95.9 0.0045 1.5E-07 46.3 2.8 23 9-31 50-72 (301)
448 1q3t_A Cytidylate kinase; nucl 95.9 0.0053 1.8E-07 44.1 3.1 25 6-30 14-38 (236)
449 2qmh_A HPR kinase/phosphorylas 95.9 0.0056 1.9E-07 42.8 3.0 24 9-32 35-58 (205)
450 3crm_A TRNA delta(2)-isopenten 95.8 0.0065 2.2E-07 45.9 3.5 22 9-30 6-27 (323)
451 3t15_A Ribulose bisphosphate c 95.8 0.006 2.1E-07 45.4 3.3 23 8-30 36-58 (293)
452 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0053 1.8E-07 47.3 3.0 19 11-29 26-44 (365)
453 1c9k_A COBU, adenosylcobinamid 95.8 0.0065 2.2E-07 41.8 3.2 21 11-31 2-22 (180)
454 3bk7_A ABC transporter ATP-bin 95.8 0.0068 2.3E-07 49.9 3.8 24 10-33 384-407 (607)
455 1a7j_A Phosphoribulokinase; tr 95.8 0.0027 9.2E-08 47.3 1.3 22 9-30 6-27 (290)
456 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0078 2.7E-07 48.8 4.0 24 10-33 314-337 (538)
457 1d2n_A N-ethylmaleimide-sensit 95.8 0.0088 3E-07 43.8 4.0 26 6-31 62-87 (272)
458 4fcw_A Chaperone protein CLPB; 95.8 0.0086 2.9E-07 44.7 4.0 23 9-31 48-70 (311)
459 1l8q_A Chromosomal replication 95.8 0.0049 1.7E-07 46.5 2.6 22 9-30 38-59 (324)
460 3ea0_A ATPase, para family; al 95.8 0.081 2.8E-06 37.8 9.1 86 57-150 119-204 (245)
461 2px0_A Flagellar biosynthesis 95.7 0.0052 1.8E-07 45.9 2.6 85 57-151 183-273 (296)
462 3qf4_A ABC transporter, ATP-bi 95.7 0.0054 1.9E-07 50.3 2.9 23 10-32 371-393 (587)
463 3syl_A Protein CBBX; photosynt 95.7 0.0078 2.7E-07 44.9 3.6 24 7-30 66-89 (309)
464 3d3q_A TRNA delta(2)-isopenten 95.7 0.0079 2.7E-07 45.7 3.4 22 9-30 8-29 (340)
465 2dr3_A UPF0273 protein PH0284; 95.7 0.0067 2.3E-07 43.5 3.0 21 10-30 25-45 (247)
466 1sxj_E Activator 1 40 kDa subu 95.6 0.0047 1.6E-07 47.1 2.2 20 11-30 39-58 (354)
467 3j16_B RLI1P; ribosome recycli 95.6 0.0085 2.9E-07 49.3 3.8 24 11-34 381-404 (608)
468 1vma_A Cell division protein F 95.6 0.0062 2.1E-07 45.7 2.7 86 57-152 187-284 (306)
469 1pzn_A RAD51, DNA repair and r 95.6 0.0059 2E-07 46.7 2.6 22 10-31 133-154 (349)
470 1ofh_A ATP-dependent HSL prote 95.6 0.0068 2.3E-07 45.1 2.9 22 9-30 51-72 (310)
471 1azs_C GS-alpha; complex (lyas 95.6 0.0082 2.8E-07 46.7 3.4 24 6-29 38-61 (402)
472 1sxj_C Activator 1 40 kDa subu 95.6 0.0061 2.1E-07 46.3 2.6 22 10-31 48-69 (340)
473 2qby_A CDC6 homolog 1, cell di 95.6 0.0064 2.2E-07 46.6 2.7 22 9-30 46-67 (386)
474 4b4t_K 26S protease regulatory 95.6 0.0065 2.2E-07 47.7 2.7 21 10-30 208-228 (428)
475 2h92_A Cytidylate kinase; ross 95.5 0.0065 2.2E-07 42.9 2.5 22 9-30 4-25 (219)
476 2ocp_A DGK, deoxyguanosine kin 95.5 0.0093 3.2E-07 42.9 3.3 22 9-30 3-24 (241)
477 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0073 2.5E-07 45.6 2.8 23 9-31 46-68 (322)
478 4b4t_M 26S protease regulatory 95.5 0.007 2.4E-07 47.6 2.7 24 8-31 215-238 (434)
479 1fnn_A CDC6P, cell division co 95.5 0.0073 2.5E-07 46.4 2.7 22 10-31 46-67 (389)
480 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0092 3.2E-07 45.6 3.2 24 7-30 23-46 (359)
481 3qks_A DNA double-strand break 95.4 0.0097 3.3E-07 41.8 3.0 19 11-29 26-44 (203)
482 4b4t_L 26S protease subunit RP 95.4 0.0078 2.7E-07 47.4 2.7 23 9-31 216-238 (437)
483 3eie_A Vacuolar protein sortin 95.4 0.0083 2.8E-07 45.2 2.8 24 8-31 51-74 (322)
484 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.7E-07 44.9 3.2 22 10-31 42-63 (339)
485 3exa_A TRNA delta(2)-isopenten 95.3 0.012 4.2E-07 44.1 3.3 23 9-31 4-26 (322)
486 4b4t_J 26S protease regulatory 95.3 0.0089 3.1E-07 46.5 2.7 23 9-31 183-205 (405)
487 2r62_A Cell division protease 95.3 0.0043 1.5E-07 45.4 0.8 21 10-30 46-66 (268)
488 3uk6_A RUVB-like 2; hexameric 95.3 0.0097 3.3E-07 45.5 2.8 21 10-30 72-92 (368)
489 4edh_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 41.8 2.9 24 7-30 5-28 (213)
490 3v9p_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 42.3 2.8 24 7-30 24-47 (227)
491 1tf7_A KAIC; homohexamer, hexa 95.2 0.01 3.5E-07 48.0 2.9 19 11-29 42-60 (525)
492 1sxj_D Activator 1 41 kDa subu 95.2 0.011 3.8E-07 44.9 3.0 21 11-31 61-81 (353)
493 3tqf_A HPR(Ser) kinase; transf 95.2 0.012 4E-07 40.3 2.7 22 10-31 18-39 (181)
494 4f4c_A Multidrug resistance pr 95.2 0.009 3.1E-07 53.6 2.8 22 10-31 1107-1128(1321)
495 2dhr_A FTSH; AAA+ protein, hex 95.2 0.0094 3.2E-07 47.8 2.6 22 10-31 66-87 (499)
496 3m6a_A ATP-dependent protease 95.2 0.0096 3.3E-07 48.3 2.6 21 10-30 110-130 (543)
497 2qgz_A Helicase loader, putati 95.2 0.013 4.5E-07 43.9 3.2 23 8-30 152-174 (308)
498 2v1u_A Cell division control p 95.2 0.01 3.5E-07 45.5 2.6 23 8-30 44-66 (387)
499 2bjv_A PSP operon transcriptio 95.2 0.012 4.1E-07 42.9 2.9 23 9-31 30-52 (265)
500 3cr8_A Sulfate adenylyltranfer 95.2 0.0085 2.9E-07 48.7 2.2 24 8-31 369-392 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-43 Score=255.66 Aligned_cols=169 Identities=40% Similarity=0.681 Sum_probs=146.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+|+|.+|||||||+++|..+.+...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 36789999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++.++++.+++++|++|||++|.||+++|+.|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988777789999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 028813 166 AASIKDRMA 174 (203)
Q Consensus 166 ~~~~~~~~~ 174 (203)
.+.+.....
T Consensus 171 ~~~i~~~~~ 179 (216)
T 4dkx_A 171 AAALPGMES 179 (216)
T ss_dssp HHHC-----
T ss_pred HHHHHhhhc
Confidence 998865433
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.5e-40 Score=237.74 Aligned_cols=202 Identities=70% Similarity=1.130 Sum_probs=163.6
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|++..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 77777899999999999999999999999988888888888888888888899888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999999877767899999999999987777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCC---CC-CcccccCCCCCCCCCCCC
Q 028813 161 AFMAMAASIKDRMASQPSMNNA---RP-PTVQIKGQPVAQKSGCCS 202 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~c~~ 202 (203)
+|++|.+.+.+........... .+ ..+.....+...+++|||
T Consensus 161 l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 206 (206)
T 2bcg_Y 161 AFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206 (206)
T ss_dssp HHHHHHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence 9999999998765433211111 11 233333334467779998
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.6e-38 Score=228.31 Aligned_cols=201 Identities=35% Similarity=0.622 Sum_probs=150.9
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 67777889999999999999999999999988877888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCC
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDS 155 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 155 (203)
+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+. ......+....++. ..+++++++||++|
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 9999999999999999999999988865543 468999999999997 44556677777777 66789999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCC-CCCCCCcccccCCCCCCCCCCCC
Q 028813 156 TNVEQAFMAMAASIKDRMASQPSM-NNARPPTVQIKGQPVAQKSGCCS 202 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~ 202 (203)
.|++++|++|.+.+.++....... ..+.+..+...+....++++|||
T Consensus 160 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred CCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 999999999999998765432211 11222333322333477888988
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.6e-36 Score=213.71 Aligned_cols=175 Identities=86% Similarity=1.322 Sum_probs=159.8
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
.+..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++++...+..++..+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 44567889999999999999999999999988888888888888889999999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998887778999999999999888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 028813 162 FMAMAASIKDRMASQ 176 (203)
Q Consensus 162 ~~~l~~~~~~~~~~~ 176 (203)
|++|.+.+.++....
T Consensus 170 ~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 170 FMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998876543
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.4e-36 Score=214.29 Aligned_cols=175 Identities=59% Similarity=1.041 Sum_probs=129.7
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 77777899999999999999999999999888777777888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|+++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999999877666799999999999987777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028813 161 AFMAMAASIKDRMAS 175 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~ 175 (203)
+|++|.+.+.++..+
T Consensus 161 l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 161 AFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999876553
No 6
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=219.87 Aligned_cols=171 Identities=51% Similarity=0.824 Sum_probs=146.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 36789999999999999999999999888777778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776667999999999999776677788888999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028813 165 MAASIKDRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
|.+.+.++...
T Consensus 170 l~~~i~~~~~~ 180 (223)
T 3cpj_B 170 LINTIYQKVSK 180 (223)
T ss_dssp HHHHHTTCC--
T ss_pred HHHHHHHHhhh
Confidence 99998765443
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=9.6e-36 Score=210.37 Aligned_cols=176 Identities=47% Similarity=0.820 Sum_probs=159.7
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 67777899999999999999999999999988887888888888888888889888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+...+...++...+++++++||++|.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999988877767899999999999976667777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 028813 161 AFMAMAASIKDRMASQ 176 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~ 176 (203)
+|++|.+.+.++....
T Consensus 163 l~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 163 AFVQCARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998776543
No 8
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=208.17 Aligned_cols=175 Identities=60% Similarity=0.958 Sum_probs=154.8
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 66778899999999999999999999999998888888888888888999999988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+|++++|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999999999999876554 689999999999987777888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 028813 161 AFMAMAASIKDRMASQ 176 (203)
Q Consensus 161 ~~~~l~~~~~~~~~~~ 176 (203)
+|++|.+.+.+.+.+.
T Consensus 161 l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 161 MFNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998776644
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-35 Score=210.93 Aligned_cols=172 Identities=49% Similarity=0.868 Sum_probs=156.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 34688999999999999999999999988887788888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999977667778888889988999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028813 164 AMAASIKDRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+.++..+
T Consensus 182 ~l~~~i~~~~~~ 193 (201)
T 2ew1_A 182 DLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999876543
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=212.43 Aligned_cols=171 Identities=36% Similarity=0.605 Sum_probs=149.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999998887766666665443 46677888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998876543 4789999999999977667788889999999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 028813 164 AMAASIKDRMASQ 176 (203)
Q Consensus 164 ~l~~~~~~~~~~~ 176 (203)
+|.+.+.+++.+.
T Consensus 170 ~l~~~i~~~~~~~ 182 (206)
T 2bov_A 170 DLMREIRARKMED 182 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHccccc
Confidence 9999998765443
No 11
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-35 Score=208.77 Aligned_cols=173 Identities=51% Similarity=0.950 Sum_probs=157.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999998877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999877666799999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 028813 164 AMAASIKDRMASQ 176 (203)
Q Consensus 164 ~l~~~~~~~~~~~ 176 (203)
+|.+.+.++..+.
T Consensus 164 ~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 164 RLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999988775543
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=8.8e-35 Score=206.15 Aligned_cols=169 Identities=52% Similarity=0.955 Sum_probs=153.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 46789999999999999999999999888777777878788778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..++++..++++++++||++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998776667999999999999776677788889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028813 165 MAASIKDRM 173 (203)
Q Consensus 165 l~~~~~~~~ 173 (203)
|.+.+.++.
T Consensus 179 l~~~i~~~~ 187 (189)
T 2gf9_A 179 LVDVICEKM 187 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987764
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.9e-35 Score=205.83 Aligned_cols=168 Identities=49% Similarity=0.897 Sum_probs=152.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45688999999999999999999999988877777888878888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999977667778889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028813 164 AMAASIKD 171 (203)
Q Consensus 164 ~l~~~~~~ 171 (203)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988753
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.9e-35 Score=207.39 Aligned_cols=170 Identities=52% Similarity=0.863 Sum_probs=151.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 46889999999999999999999999888777777778788888888898889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++.|++++|++
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999776677788889999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028813 165 MAASIKDRMA 174 (203)
Q Consensus 165 l~~~~~~~~~ 174 (203)
|.+.+.++..
T Consensus 178 l~~~i~~~~~ 187 (191)
T 2a5j_A 178 TAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 15
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=209.76 Aligned_cols=169 Identities=51% Similarity=0.883 Sum_probs=146.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 46789999999999999999999999888777777877778888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 163 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..+++ +++++||++|.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999877667799999999999977667788889999999999 999999999999999999
Q ss_pred HHHHHHHHHh
Q 028813 164 AMAASIKDRM 173 (203)
Q Consensus 164 ~l~~~~~~~~ 173 (203)
+|.+.+.++.
T Consensus 186 ~l~~~i~~~~ 195 (201)
T 2hup_A 186 RVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999997654
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9.1e-35 Score=204.44 Aligned_cols=168 Identities=44% Similarity=0.711 Sum_probs=152.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..++|+++|.+|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||+.++...+..++..+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 46789999999999999999999999888877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998776668999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028813 165 MAASIKDR 172 (203)
Q Consensus 165 l~~~~~~~ 172 (203)
|.+.+.+.
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 99877544
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=203.21 Aligned_cols=171 Identities=50% Similarity=0.940 Sum_probs=144.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
..+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999988774 456677777777777788888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999987776789999999999998777778888889999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028813 163 MAMAASIKDRMA 174 (203)
Q Consensus 163 ~~l~~~~~~~~~ 174 (203)
++|.+.+.++..
T Consensus 166 ~~l~~~~~~~~~ 177 (180)
T 2g6b_A 166 TAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHhc
Confidence 999998875543
No 18
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8e-35 Score=204.56 Aligned_cols=173 Identities=33% Similarity=0.583 Sum_probs=151.7
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|..+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 6667788999999999999999999999998877777777765554 667788888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
+|++++|+|++++.++..+..|+..+ ......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 99999999999999999999999887 44445678999999999997767777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028813 160 QAFMAMAASIKDRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|++|.+.+.++..
T Consensus 161 ~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 161 EAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987654
No 19
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-36 Score=212.88 Aligned_cols=171 Identities=50% Similarity=0.960 Sum_probs=156.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..++..+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 45788999999999999999999999988877777777778888888888878999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+..+.++..++++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=9.7e-35 Score=202.18 Aligned_cols=167 Identities=56% Similarity=1.028 Sum_probs=144.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999998887777788887888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999998877678999999999999 445567788888999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028813 166 AASIKDRM 173 (203)
Q Consensus 166 ~~~~~~~~ 173 (203)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987653
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.8e-35 Score=203.82 Aligned_cols=167 Identities=37% Similarity=0.748 Sum_probs=144.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35789999999999999999999999888777788888888888888888889999999999999999899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887766567899999999999776677888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028813 165 MAASIKD 171 (203)
Q Consensus 165 l~~~~~~ 171 (203)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=205.57 Aligned_cols=171 Identities=46% Similarity=0.779 Sum_probs=154.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34678999999999999999999999988877777887888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++.+.++...+++++++||++|.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998776666899999999999977666778888899989999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.++..
T Consensus 181 ~l~~~i~~~~~ 191 (193)
T 2oil_A 181 TVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.7e-34 Score=202.51 Aligned_cols=169 Identities=35% Similarity=0.584 Sum_probs=150.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
++...+.+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34567889999999999999999999998888777777776555 67777888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC-CCCCHH
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK-DSTNVE 159 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~ 159 (203)
|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++.++++..++++++++||+ ++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 9999999999999999999999888553 44678999999999998878888899999999999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKD 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=207.94 Aligned_cols=170 Identities=48% Similarity=0.886 Sum_probs=146.7
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
++.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||.+++...+..++..+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 35678999999999999999999999998887777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~ 161 (203)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++... +++++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999998877778999999999999776677778888888874 789999999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 162 FMAMAASIKDR 172 (203)
Q Consensus 162 ~~~l~~~~~~~ 172 (203)
|++|.+.+.++
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-35 Score=207.73 Aligned_cols=169 Identities=39% Similarity=0.688 Sum_probs=151.0
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
+..++.+||+|+|.+|+|||||+++|++..+.....++.+.++....+..++..+.+.+||+||.+++...+..++..+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 44578899999999999999999999998877777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||+++.|++++|
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999999988776789999999999997666677888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028813 163 MAMAASIKD 171 (203)
Q Consensus 163 ~~l~~~~~~ 171 (203)
++|.+.+.+
T Consensus 178 ~~l~~~i~~ 186 (192)
T 2fg5_A 178 QGISRQIPP 186 (192)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999887653
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.3e-34 Score=202.50 Aligned_cols=170 Identities=30% Similarity=0.488 Sum_probs=148.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4789999999999999999999998888777777777665 677778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998885543 347899999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 028813 165 MAASIKDRMASQ 176 (203)
Q Consensus 165 l~~~~~~~~~~~ 176 (203)
|.+.+..+....
T Consensus 163 l~~~~~~~~~~~ 174 (181)
T 3t5g_A 163 IILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHhcCCc
Confidence 999998765443
No 27
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=207.19 Aligned_cols=172 Identities=48% Similarity=0.821 Sum_probs=146.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999999888777778888788888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999987776678999999999999766667778888899999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 028813 165 MAASIKDRMASQ 176 (203)
Q Consensus 165 l~~~~~~~~~~~ 176 (203)
|.+.+.++..+.
T Consensus 182 l~~~i~~~~~~~ 193 (200)
T 2o52_A 182 CARTILNKIDSG 193 (200)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 999998776543
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.4e-34 Score=204.29 Aligned_cols=176 Identities=40% Similarity=0.788 Sum_probs=152.9
Q ss_pred CCC-CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeE-EEEEEeCCe---------EEEEEEEeCCCccc
Q 028813 1 MNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQER 69 (203)
Q Consensus 1 m~~-~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~ 69 (203)
|+. +.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||.++
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 554 5678999999999999999999999998887777777777776 566666655 68999999999999
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEE
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM 148 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
+...+..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+..++++..++++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999998876654 5789999999999977667778888999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMASQ 176 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 176 (203)
++||+++.|++++|++|.+.+.++....
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999998776543
No 29
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.9e-34 Score=198.19 Aligned_cols=165 Identities=41% Similarity=0.706 Sum_probs=150.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+....+.+||+||.+++...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45789999999999999999999999888777788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
++|+|++++.++..+..|+..+........|+++|+||+|+.+.+.+..+....++..++++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998876778999999999999876777788888999999999999999999999999999
Q ss_pred HHHHH
Q 028813 165 MAASI 169 (203)
Q Consensus 165 l~~~~ 169 (203)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.4e-34 Score=199.29 Aligned_cols=164 Identities=48% Similarity=0.788 Sum_probs=149.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999998887777788887888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++..+++..++++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999877766789999999999997666677788888999999999999999999999999999
Q ss_pred HHHH
Q 028813 166 AASI 169 (203)
Q Consensus 166 ~~~~ 169 (203)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8765
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=200.37 Aligned_cols=163 Identities=40% Similarity=0.712 Sum_probs=147.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999988877777888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+. +.+..+..++++..++++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999987776678999999999998654 56777888889989999999999999999999999
Q ss_pred HHHHHH
Q 028813 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=205.16 Aligned_cols=171 Identities=27% Similarity=0.353 Sum_probs=144.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhccCCc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d 82 (203)
+.++.+||+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456889999999999999999999986544334445556667777788898889999999999987764 6777889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998876543 47899999999999877778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028813 162 FMAMAASIKDRMA 174 (203)
Q Consensus 162 ~~~l~~~~~~~~~ 174 (203)
|++|.+.+.+++.
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999998875443
No 33
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2e-34 Score=202.64 Aligned_cols=174 Identities=40% Similarity=0.687 Sum_probs=135.0
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhcc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR 79 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (203)
|+...+..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +....+.+||+||++++...+..++.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 77777889999999999999999999999988877777888778888888777 55689999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-ccCCHHHHHHHHH-HhCCcEEEeecC
Q 028813 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EIGIPFMETSAK 153 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~ 153 (203)
.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +.+..++...++. ..+++++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999999999999999999988866543 57899999999999543 4466777888887 456899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 028813 154 DSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+|.|++++|++|.+.+.++++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999887643
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.9e-34 Score=201.88 Aligned_cols=173 Identities=47% Similarity=0.809 Sum_probs=152.7
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+......++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+.++...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 44555678999999999999999999999988877888888888888888889888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (203)
+|++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..++...++..++++++++||+++.|++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 999999999999999999999998886654 2478999999999994 34566778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028813 160 QAFMAMAASIKDRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|++|.+.+.+...
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 167 CAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999986544
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.9e-34 Score=199.36 Aligned_cols=165 Identities=33% Similarity=0.646 Sum_probs=149.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999886655 468999999999997766677888889999999999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988763
No 36
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-33 Score=200.10 Aligned_cols=169 Identities=35% Similarity=0.643 Sum_probs=144.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999998887666666654 555667778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .....+....++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999886643 35789999999999864 456778888999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 028813 165 MAASIKDRMASQ 176 (203)
Q Consensus 165 l~~~~~~~~~~~ 176 (203)
|.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776654
No 37
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-34 Score=208.80 Aligned_cols=168 Identities=30% Similarity=0.602 Sum_probs=141.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999998887777777766443 456667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--------CCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------VSYETAKAFADEIGI-PFMETSAKDS 155 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (203)
+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... +..++..+++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 79998877654 689999999999866543 367788888888896 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 028813 156 TNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~~~~ 175 (203)
.|++++|++|.+.+.+....
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999999765443
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=203.29 Aligned_cols=172 Identities=56% Similarity=1.015 Sum_probs=152.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777888888888888888898889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++||+++.|++++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988777667999999999999 44556777888888889999999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 028813 165 MAASIKDRMASQP 177 (203)
Q Consensus 165 l~~~~~~~~~~~~ 177 (203)
|.+.+.++.....
T Consensus 176 l~~~~~~~~~~~~ 188 (213)
T 3cph_A 176 LAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhh
Confidence 9999987755433
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.7e-33 Score=197.19 Aligned_cols=166 Identities=40% Similarity=0.721 Sum_probs=145.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..++|+++|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||..++...+..++..+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999888777788888888888888998889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCCCCHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 159 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+....++..+++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998866543 578999999999997 45567778888887 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKD 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 40
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=197.09 Aligned_cols=169 Identities=31% Similarity=0.431 Sum_probs=136.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--cccchhhhccCCcE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG 83 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 83 (203)
++.+||+++|++|+|||||+++|.+......+ ++.+.+.....+.+++..+.+.+||+||... +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999988765443 3455566777788888888999999999887 56667778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998886542 3478999999999998777788888888888899999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028813 163 MAMAASIKDRMAS 175 (203)
Q Consensus 163 ~~l~~~~~~~~~~ 175 (203)
++|.+.+..++..
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999999776543
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.3e-34 Score=200.48 Aligned_cols=166 Identities=40% Similarity=0.702 Sum_probs=150.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||..++...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46699999999999999999999988887778888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877666679999999999997777777888888898999999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 886643
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=7.5e-34 Score=197.64 Aligned_cols=165 Identities=28% Similarity=0.366 Sum_probs=133.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhccCCcEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIII 86 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (203)
.+||+++|.+|+|||||+++|.+........++.+.+.....+..++..+.+.+||++|..++.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776656656666777888888999899999999999988765 67777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998866554 478999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028813 166 AASIKDR 172 (203)
Q Consensus 166 ~~~~~~~ 172 (203)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988765
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=9e-34 Score=200.93 Aligned_cols=167 Identities=44% Similarity=0.833 Sum_probs=146.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhccCCcE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~ 83 (203)
..+.+||+|+|.+|+|||||+++|++..+.....++.+.++....+..++..+.+.+||+||.+++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3577999999999999999999999988877778888888888888889888999999999999887 788889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC---CCHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS---TNVE 159 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~ 159 (203)
+|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+..+.++..++++++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999887664 457999999999999776677888889999999999999999999 9999
Q ss_pred HHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKD 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|.+|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887753
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.7e-34 Score=201.51 Aligned_cols=168 Identities=32% Similarity=0.532 Sum_probs=146.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999887766777777778888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
+++|+|++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++...++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988866432 1345 899999999977666778888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 161 AFMAMAASIKDR 172 (203)
Q Consensus 161 ~~~~l~~~~~~~ 172 (203)
+|++|.+.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988644
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=204.83 Aligned_cols=167 Identities=41% Similarity=0.732 Sum_probs=138.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45789999999999999999999999887777777777778888888898889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT------ANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
|+|+|++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..+..+.++..++++++++||++|.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999999999987766679999999999985 34566778888899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIKD 171 (203)
Q Consensus 159 ~~~~~~l~~~~~~ 171 (203)
+++|.+|.+.+.+
T Consensus 185 ~el~~~l~~~i~~ 197 (199)
T 2p5s_A 185 VEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.6e-34 Score=207.16 Aligned_cols=172 Identities=42% Similarity=0.821 Sum_probs=150.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe----------EEEEEEEeCCCccccccc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRTI 73 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~ 73 (203)
..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.+||+||++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3478899999999999999999999998887777777777777777777665 689999999999999999
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
+..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+..++++..++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999887755443 57899999999999776677788899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q 028813 153 KDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
+++.|++++|++|.+.+.++..+
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999876554
No 47
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-34 Score=203.58 Aligned_cols=167 Identities=32% Similarity=0.483 Sum_probs=141.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||..++...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 567999999999999999999999888766666666533 3345667778889999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....+....++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888887765543 3689999999999865 45667778888888999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.++..
T Consensus 164 ~l~~~~~~~~~ 174 (199)
T 2gf0_A 164 ELLTLETRRNM 174 (199)
T ss_dssp HHHHHCSSSCE
T ss_pred HHHHHHhhhhc
Confidence 99988765433
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5.4e-33 Score=198.88 Aligned_cols=166 Identities=34% Similarity=0.613 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE-----------------------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT----------------------------- 56 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 56 (203)
++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999988887778888877877777777655
Q ss_pred --------EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 57 --------IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 57 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
..+.+||+||+..+...+..++..+|++++|+|++++.++..+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8999999999999999999999999999999999999999999999998876553 89999999999 555
Q ss_pred ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
.....+++++++..++++++++||++|.|++++|++|.+.+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 6677888999999999999999999999999999999999886643
No 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=203.24 Aligned_cols=169 Identities=28% Similarity=0.453 Sum_probs=143.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||.+.+...+..++..+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 5789999999999999999999999888877777776555 566666677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999886543 346899999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028813 165 MAASIKDRMAS 175 (203)
Q Consensus 165 l~~~~~~~~~~ 175 (203)
|.+.+.+....
T Consensus 181 l~~~i~~~~~~ 191 (201)
T 3oes_A 181 VIQEIARVENS 191 (201)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHhhhhh
Confidence 99999866443
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.6e-33 Score=197.60 Aligned_cols=167 Identities=26% Similarity=0.548 Sum_probs=146.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 357899999999999999999999998887777777765544 4677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--ccCCHHHHHHHHHHhCCc-EEEeecCCCCCHHH
Q 028813 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQ 160 (203)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 160 (203)
|+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++..+++..+++. ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 67888887654 46899999999999753 567788899999999998 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028813 161 AFMAMAASIKDRM 173 (203)
Q Consensus 161 ~~~~l~~~~~~~~ 173 (203)
+|++|.+.+.++.
T Consensus 178 l~~~l~~~i~~~~ 190 (194)
T 3reg_A 178 VFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987554
No 51
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1e-33 Score=204.95 Aligned_cols=175 Identities=28% Similarity=0.469 Sum_probs=148.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
....+||+|+|.+|||||||+++|++..+...+.++.+.......+...+ ..+.+.+||+||.+.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 35789999999999999999999998887777777777666665555543 44889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999887777799999999999987777888888888888899999999999999999999
Q ss_pred HHHHHHHHHhccCCCC
Q 028813 164 AMAASIKDRMASQPSM 179 (203)
Q Consensus 164 ~l~~~~~~~~~~~~~~ 179 (203)
+|.+.+.++.......
T Consensus 168 ~l~~~~~~~~~~~~~~ 183 (218)
T 4djt_A 168 HLARIFTGRPDLIFVS 183 (218)
T ss_dssp HHHHHHHCCTTCCBCS
T ss_pred HHHHHHhccccccccc
Confidence 9999998876655443
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.6e-33 Score=197.06 Aligned_cols=170 Identities=36% Similarity=0.593 Sum_probs=147.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....+||+|+|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||+.++...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 4577999999999999999999999888776666666544 345567788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++.++++..++++++++||+++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999988866544 4789999999999977666778888999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028813 164 AMAASIKDRMAS 175 (203)
Q Consensus 164 ~l~~~~~~~~~~ 175 (203)
+|.+.+.+++.+
T Consensus 174 ~l~~~i~~~~~~ 185 (187)
T 2a9k_A 174 DLMREIRARKME 185 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999999876653
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.2e-33 Score=193.92 Aligned_cols=165 Identities=38% Similarity=0.628 Sum_probs=141.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||..++...+..++..+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3569999999999999999999998887666666665443 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999988866544 47999999999999776677888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028813 165 MAASIKD 171 (203)
Q Consensus 165 l~~~~~~ 171 (203)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998763
No 54
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=198.93 Aligned_cols=165 Identities=26% Similarity=0.432 Sum_probs=140.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|.+++... ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35789999999999999999999999887777777776554 455677888899999999999988774 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec-CCCCCHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQ 160 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~ 160 (203)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..++++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999886653 247899999999999776778888899999999999999999 89999999
Q ss_pred HHHHHHHHHHH
Q 028813 161 AFMAMAASIKD 171 (203)
Q Consensus 161 ~~~~l~~~~~~ 171 (203)
+|++|.+.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 55
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=214.07 Aligned_cols=170 Identities=88% Similarity=1.344 Sum_probs=143.4
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
++..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+++...+..++..+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 44557899999999999999999999999888877788888888889999999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998777778999999999999877666666678888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 028813 162 FMAMAASIKD 171 (203)
Q Consensus 162 ~~~l~~~~~~ 171 (203)
|++|.+.+.+
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 56
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.4e-33 Score=202.52 Aligned_cols=170 Identities=26% Similarity=0.524 Sum_probs=143.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|.+++...+..++..+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345789999999999999999999999888877778777554 4566677778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEE
Q 028813 84 IIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME 149 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 149 (203)
+|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..++...++..+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 688999997765 46899999999999653 56788889999999999 9999
Q ss_pred eecCCCCC-HHHHHHHHHHHHHHHhcc
Q 028813 150 TSAKDSTN-VEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 150 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~ 175 (203)
|||++|.| ++++|++|.+.+......
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcC
Confidence 99999998 999999999998866543
No 57
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.9e-33 Score=195.38 Aligned_cols=164 Identities=20% Similarity=0.341 Sum_probs=141.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+....+||+|+|.+|||||||+++|++..+...+.++. ..+...+.+++..+.+.+||++|.+++. ++..+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 35688999999999999999999999988876666653 3345778889988999999999988765 7788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEIG-IPFMETSAKDSTNVE 159 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 159 (203)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++..+++..++ ++++++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999876643 468999999999984 456678888999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028813 160 QAFMAMAASIKDRMA 174 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~ 174 (203)
++|++|.+.+.+++.
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887643
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=8e-33 Score=191.87 Aligned_cols=163 Identities=31% Similarity=0.419 Sum_probs=122.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (203)
.+||+++|.+|+|||||+++|.+...... .++.+.+ ....+..++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccc-eEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665322 2233322 345667888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998886543 35789999999999988888888889999999999999999999999999999999
Q ss_pred HHHHHH
Q 028813 167 ASIKDR 172 (203)
Q Consensus 167 ~~~~~~ 172 (203)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998765
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.1e-33 Score=193.19 Aligned_cols=164 Identities=38% Similarity=0.640 Sum_probs=143.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++|+|||||+++|.++.+...+.++.+ ......+..++....+.+||+||.+++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 458999999999999999999998887766666655 3446677788888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988876543 3579999999999997766777888888999999999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988754
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.5e-33 Score=198.80 Aligned_cols=170 Identities=28% Similarity=0.393 Sum_probs=138.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCC
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGA 81 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 81 (203)
..++.+||+|+|.+|+|||||+++|.+... .....++.+.++....+.+++..+.+.+||++|... +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 346779999999999999999999996433 122233455666777788899888999999999776 455566678899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
|++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998877653 234789999999999976666777778888888999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028813 161 AFMAMAASIKDRM 173 (203)
Q Consensus 161 ~~~~l~~~~~~~~ 173 (203)
+|++|.+.+..++
T Consensus 193 lf~~l~~~i~~~~ 205 (211)
T 2g3y_A 193 LFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 61
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-32 Score=194.29 Aligned_cols=164 Identities=33% Similarity=0.588 Sum_probs=143.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35789999999999999999999998887777777765443 45667777788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEe
Q 028813 85 IIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 150 (203)
|+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 79888877644 6899999999999754 35677888899998997 99999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028813 151 SAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~ 170 (203)
||++|.|++++|++|.+.+.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=9.1e-33 Score=191.62 Aligned_cols=163 Identities=35% Similarity=0.624 Sum_probs=142.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887777777766443 4556677778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++..+ +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999998887654 3457999999999999777777788888888887 789999999999999999999
Q ss_pred HHHHHH
Q 028813 165 MAASIK 170 (203)
Q Consensus 165 l~~~~~ 170 (203)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 63
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-33 Score=199.46 Aligned_cols=169 Identities=31% Similarity=0.610 Sum_probs=141.6
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (203)
|+...++.+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+++...+..++..
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 566667889999999999999999999999888777777776554 4556677778999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-Cc
Q 028813 81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IP 146 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~ 146 (203)
+|++|+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..++.++++..++ ++
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999998 689888876653 6899999999999642 4567788889998887 69
Q ss_pred EEEeecC-CCCCHHHHHHHHHHHHHH
Q 028813 147 FMETSAK-DSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 147 ~~~~Sa~-~~~~i~~~~~~l~~~~~~ 171 (203)
++++||+ ++.|++++|++|.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999988764
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=195.90 Aligned_cols=168 Identities=30% Similarity=0.479 Sum_probs=138.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.+..++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+++...+..++.++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 4678999999999999999999999888766666666533 455677788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEe
Q 028813 85 IIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 150 (203)
|+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999997 69988877654 6899999999998652 45677888889888887 99999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
||++|.|++++|++|.+.+.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999887654
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.4e-33 Score=202.46 Aligned_cols=169 Identities=26% Similarity=0.498 Sum_probs=113.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEeCCe--EEEEEEEeCCCccccccchhhhccCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA 81 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (203)
...++|+|+|.+|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||.+.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 666667777776777788888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CccCCHHHHHHHHHHhCCcEEEeecCC-CC
Q 028813 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTA-NKVVSYETAKAFADEIGIPFMETSAKD-ST 156 (203)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 156 (203)
|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++...++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987765 5799999999999987 667788889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 028813 157 NVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~~~ 174 (203)
|++++|++|.+.+.+...
T Consensus 178 gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYE 195 (208)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=195.64 Aligned_cols=167 Identities=33% Similarity=0.517 Sum_probs=145.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||... ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4679999999999999999999999887777777766443 45567788889999999999887 677888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC-CHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFM 163 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~ 163 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999998886653 3578999999999997766778888899999999999999999999 9999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.+++.
T Consensus 184 ~l~~~i~~~~~ 194 (196)
T 2atv_A 184 ELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhcc
Confidence 99999986643
No 67
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.5e-32 Score=191.56 Aligned_cols=163 Identities=24% Similarity=0.349 Sum_probs=136.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+||++|+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999888765 555555 34466777888889999999999876 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++.++++..+ +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665443 2578999999999984 44567788888888876 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028813 160 QAFMAMAASIKDRMAS 175 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~ 175 (203)
++|++|.+.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876553
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=8.5e-32 Score=190.79 Aligned_cols=168 Identities=35% Similarity=0.607 Sum_probs=134.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
....++|+++|.+|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||..++...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 357799999999999999999999988776666665543 3446677788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++.++++..++++++++||+++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988866543 4689999999999866 45677888899999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.+++.
T Consensus 176 ~l~~~~~~~~~ 186 (190)
T 3con_A 176 TLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999887644
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.9e-32 Score=192.31 Aligned_cols=164 Identities=30% Similarity=0.551 Sum_probs=142.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 567999999999999999999999888776666666533 3556677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888876654 6899999999998654 35667778888888887 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~ 171 (203)
|++|.|++++|++|.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=196.26 Aligned_cols=167 Identities=32% Similarity=0.608 Sum_probs=123.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+++|.+|+|||||+++|.+..+...+.++.+ ......+.+++..+.+.+||+||++++...+..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4679999999999999999999999887766666654 334556778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..++...++..+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6888887654 468999999999997643 5667778888888897 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q 028813 152 AKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
|++|.|++++|++|.+.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999876543
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.4e-32 Score=192.07 Aligned_cols=165 Identities=30% Similarity=0.593 Sum_probs=141.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46789999999999999999999999888777777766544 45567777889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEe
Q 028813 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET 150 (203)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 150 (203)
|+|+|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++..+++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67988887654 36899999999999642 4567788888998888 799999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q 028813 151 SAK-DSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 151 Sa~-~~~~i~~~~~~l~~~~~~ 171 (203)
||+ ++.|++++|++|.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999988753
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.6e-31 Score=184.83 Aligned_cols=163 Identities=36% Similarity=0.617 Sum_probs=140.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||..++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 3589999999999999999999988776666665543 345666778888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+...+++..++++++++|+++|.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998866543 4689999999999876 4566778888999999999999999999999999999
Q ss_pred HHHHHH
Q 028813 166 AASIKD 171 (203)
Q Consensus 166 ~~~~~~ 171 (203)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=190.99 Aligned_cols=163 Identities=33% Similarity=0.515 Sum_probs=139.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 458999999999999999999999887666666665433 3455677778899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA 164 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 164 (203)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+.......++..++++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999998888888765532 46899999999999776677777888888889999999999999999999999
Q ss_pred HHHHHH
Q 028813 165 MAASIK 170 (203)
Q Consensus 165 l~~~~~ 170 (203)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.9e-31 Score=190.75 Aligned_cols=163 Identities=31% Similarity=0.606 Sum_probs=141.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 56799999999999999999999998887777777765554 34677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 678888876543 6899999999999765 34677788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~ 170 (203)
|++|.|++++|++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998765
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.8e-32 Score=194.17 Aligned_cols=169 Identities=24% Similarity=0.318 Sum_probs=134.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEE-EeCCeEEEEEEEeCCCcccccc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
..++.+||+|+|.+|||||||++.+.+...... ..++.+.++....+ ..++..+.+.+||+||++++..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 346889999999999999999987765432221 12333333333333 4566778999999999999999
Q ss_pred chhhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-
Q 028813 73 ITSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI- 145 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~- 145 (203)
.+..+++.+|++|+|+|++ +..++..+..|+..+. ....+.|+++|+||+|+.+. ...+++++++..+++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCS
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCc
Confidence 9999999999999999999 5567777777877763 23357999999999998654 677888899988998
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 146 PFMETSAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 146 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
+++++||++|.|++++|++|.+.+.++.++
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999877653
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-31 Score=191.29 Aligned_cols=165 Identities=31% Similarity=0.597 Sum_probs=136.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
+..+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||.+++...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46789999999999999999999998877666666664443 34677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 67888886654 36899999999999654 34667778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~~ 172 (203)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988744
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=5e-31 Score=187.32 Aligned_cols=167 Identities=28% Similarity=0.391 Sum_probs=135.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH 82 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 82 (203)
++.+||+++|.+|||||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 467999999999999999999999632 2222 23455566677788899888999999999765 4556677788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 161 (203)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776653 357899999999999766667777777888888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028813 162 FMAMAASIKDRM 173 (203)
Q Consensus 162 ~~~l~~~~~~~~ 173 (203)
|++|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.8e-32 Score=192.79 Aligned_cols=163 Identities=32% Similarity=0.624 Sum_probs=125.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4679999999999999999999998877666666554332 223445566678889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----------CCHHHHHHHHHHhCC-cEEEeecC
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV----------VSYETAKAFADEIGI-PFMETSAK 153 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... +..++..+++..+++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 69888877654 689999999999866543 367778888888896 99999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028813 154 DSTNVEQAFMAMAASIK 170 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~ 170 (203)
+|.|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998763
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.8e-31 Score=191.42 Aligned_cols=162 Identities=31% Similarity=0.574 Sum_probs=137.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...+||+++|.+|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5679999999999999999999998887766666664 445566777888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------------CCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV------------VSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... +..++...++..+++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999997 7888887765 5689999999999866532 677788888888886 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~ 169 (203)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.7e-31 Score=190.49 Aligned_cols=165 Identities=17% Similarity=0.314 Sum_probs=129.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
+.....+|+|+|.+|||||||+++|++..+.. .+.++.+ .....+...+ +.+.+||+||++++...+..++..+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 45788999999999999999999999988877 6667666 3344444444 89999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCccCCHHHHHH------HHHHhCCcEE
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--------DNVNKLLVGNKCDLTANKVVSYETAKA------FADEIGIPFM 148 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ilv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~ 148 (203)
++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+... .+++.. ++...+++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEE
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEE
Confidence 99999999999999999888887744311 2689999999999976532 222211 1134568999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
++||++|.|++++|++|.+.+.++..
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987643
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=5.3e-32 Score=196.36 Aligned_cols=168 Identities=32% Similarity=0.586 Sum_probs=146.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
...+.+||+++|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 34678999999999999999999988776666677777888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+|+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.... .....++...+++++++||++|.|++++|.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999977653 6899999999999654432 245567778899999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028813 164 AMAASIKDRMA 174 (203)
Q Consensus 164 ~l~~~~~~~~~ 174 (203)
+|.+.+.....
T Consensus 168 ~l~~~l~~~~~ 178 (221)
T 3gj0_A 168 WLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHTCTT
T ss_pred HHHHHHHhCcc
Confidence 99999876544
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=2.4e-30 Score=184.80 Aligned_cols=171 Identities=51% Similarity=0.837 Sum_probs=149.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999998887777788777888888889998899999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 165 (203)
+|+|+.+..+++.+..|+..+......+.|+++++||+|+.+......++...++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988889888866555578999999999997666667778888998899999999999999999999999
Q ss_pred HHHHHHHhccC
Q 028813 166 AASIKDRMASQ 176 (203)
Q Consensus 166 ~~~~~~~~~~~ 176 (203)
.+.+.+...+.
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998765444
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=182.77 Aligned_cols=162 Identities=19% Similarity=0.319 Sum_probs=129.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
..+.++|+|+|.+|+|||||+++|.+.. ....+.++.+ .....+.+++ ..+.+||+||.+++...+..++..+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3578999999999999999999999877 4455555554 4556666665 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCC
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDS 155 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 155 (203)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.++.. ..+++++++||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999888887755432 47899999999999653 34455555543 23578999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAASIKDR 172 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~ 172 (203)
.|++++|++|.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999887543
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.3e-29 Score=178.59 Aligned_cols=166 Identities=54% Similarity=0.890 Sum_probs=147.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (203)
+.++.++|+|+|++|||||||+++|.+..++..+.++.+.++....+.+++..+.+.+||++|..++...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 34678999999999999999999999988887888888888888899999988889999999999888888888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 163 (203)
+++|+|+.+..+++.+..|+..+........|+++++||+|+.+......+..+.++...++.++++|++++.|++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888888877665555789999999999976566677888889999999999999999999999999
Q ss_pred HHHHHH
Q 028813 164 AMAASI 169 (203)
Q Consensus 164 ~l~~~~ 169 (203)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=9.2e-30 Score=179.72 Aligned_cols=160 Identities=24% Similarity=0.430 Sum_probs=128.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.+.. ...+.++.+ .....+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999877 556666655 3445555655 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888777443 23468999999999996543 2333333221 235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=2.8e-30 Score=179.81 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=125.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|+|||||+++|.+..+. ...++.+ .....+.+++ ..+.+||+||.+++...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 35699999999999999999999987764 3444544 4445566665 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHH-----HHHhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..++... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999888888766433 225789999999999966432 2222222 12235689999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKD 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=6.3e-31 Score=186.18 Aligned_cols=161 Identities=24% Similarity=0.404 Sum_probs=127.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++. .+...+ +.+.+||+||..++...+..++..+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 56899999999999999999999988877666677665543 344444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 999999999999998888777443 22578999999999996542 2222222211 124579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877544
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4.3e-31 Score=182.77 Aligned_cols=157 Identities=22% Similarity=0.406 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (203)
+||+++|.+|+|||||+++|.+..+.. +.++.+ .....+...+ +.+.+||+||++++...+..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 345544 3344454444 78999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHH
Q 028813 89 DVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 89 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 162 (203)
|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...++..... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888876432 23468999999999996542 2222222111 124579999999999999999
Q ss_pred HHHHHHHHHH
Q 028813 163 MAMAASIKDR 172 (203)
Q Consensus 163 ~~l~~~~~~~ 172 (203)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999887543
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.3e-30 Score=182.87 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=120.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 35689999999999999999999987754 344444433 35566676 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----------------hCCcE
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----------------IGIPF 147 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 147 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999998877543 235789999999999965 4556666666542 24579
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 028813 148 METSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 148 ~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
++|||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.4e-30 Score=180.43 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=124.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|.+|||||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+||+||.+++...+..++..+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999987765 445555433 34455555 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988875532 247899999999999653 23344444332 235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.3e-29 Score=179.67 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=125.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+++|++|||||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 35679999999999999999999987764 33444443 456666776 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------------hCCcEEEeec
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA 152 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 152 (203)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ....+++.+.... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999988877543 235789999999999965 3455555555432 3468999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAAS 168 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~ 168 (203)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.5e-30 Score=179.87 Aligned_cols=157 Identities=20% Similarity=0.316 Sum_probs=123.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
..+.++|+++|.+|+|||||+++|.+..+ ....++.+... ..+.+++ ..+.+||+||.+++...+..++..+|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 45789999999999999999999998876 34445555333 4455555 8899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCH
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNV 158 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 158 (203)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999988887775432 357899999999999653 23344433321 23468999999999999
Q ss_pred HHHHHHHHHH
Q 028813 159 EQAFMAMAAS 168 (203)
Q Consensus 159 ~~~~~~l~~~ 168 (203)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.2e-30 Score=185.45 Aligned_cols=158 Identities=22% Similarity=0.372 Sum_probs=119.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+|+|++|||||||+++|.+..+. ...++.+ .....+...+ +.+.+||+||.+++...+..++..+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 46799999999999999999999987764 3344444 4445555555 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999998888876432 23468999999999996542 2222222111 123579999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 160 QAFMAMAASIK 170 (203)
Q Consensus 160 ~~~~~l~~~~~ 170 (203)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.9e-29 Score=176.59 Aligned_cols=160 Identities=26% Similarity=0.383 Sum_probs=123.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|||||||+++|.+..+. .+.++.+ .....+..++ +.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999987542 3344444 3344555665 78999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... .+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776332 235789999999999965432 233322211 224679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=4e-30 Score=182.07 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=125.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|.+|+|||||+++|.+..+.. +.++.+ .....+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998776643 344544 3344555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... .+++.... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999888888776443 235789999999999965432 22222211 1234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.2e-28 Score=188.80 Aligned_cols=163 Identities=29% Similarity=0.546 Sum_probs=141.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
..++|+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..++..+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4589999999999999999999988877676666653 345667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeec
Q 028813 87 VYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSA 152 (203)
Q Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 152 (203)
|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 68888876654 7899999999998653 45677888899999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~ 171 (203)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4e-29 Score=175.88 Aligned_cols=160 Identities=23% Similarity=0.368 Sum_probs=124.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++.++|+++|++|||||||+++|.+..+ ..+.++.+ .....+.+++ ..+.+||+||..++...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 34445554 3344555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888775432 357899999999998653 233444333221 23579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKDR 172 (203)
Q Consensus 160 ~~~~~l~~~~~~~ 172 (203)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 98
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1e-28 Score=179.90 Aligned_cols=166 Identities=21% Similarity=0.182 Sum_probs=119.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc------cc---ccchhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RF---RTITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~~ 76 (203)
+..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||.. +. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998876533334444445555555555 789999999983 21 111234
Q ss_pred hccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH---HHHHHHHHhC--CcEEE
Q 028813 77 YYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE---TAKAFADEIG--IPFME 149 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 149 (203)
++..+|++|+|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 567889999999999987654 223455555432 236899999999999776655543 4566666676 89999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 150 TSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+||++|.|++++|++|.+.+.+.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2.1e-29 Score=179.47 Aligned_cols=161 Identities=20% Similarity=0.268 Sum_probs=119.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEE--EEEEe-CCeEEEEEEEeCCCccccccch---hhh
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI--RTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSY 77 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~ 77 (203)
+.++.+||+++|.+|||||||++++.+.... . ++.+.+... ....+ ++..+.+.+||++|++++.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4578899999999999999999988875332 2 222222222 22223 2456889999999999987766 789
Q ss_pred ccCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------ccCCHHHHHHHHH----HhC
Q 028813 78 YRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-------KVVSYETAKAFAD----EIG 144 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~-------~~~~~~~~~~~~~----~~~ 144 (203)
++.+|++|+|+|++++ +++..+..|+..+... ..+.|+++|+||+|+.+. +.+.......++. .++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 6667777777766433 347999999999998652 2344444566666 567
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 145 IPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 145 ~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
++++++||++ .|++++|..|.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998764
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=6.1e-30 Score=180.52 Aligned_cols=164 Identities=23% Similarity=0.422 Sum_probs=121.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEe---CCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (203)
.+||+++|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+||++|.+++...+..++..+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344455666666665555443 234578999999999999888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC---HHHHHHHHHHhCCc----EEEeecCC
Q 028813 83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YETAKAFADEIGIP----FMETSAKD 154 (203)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 154 (203)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57888999999886654 368999999999986543321 22334455556776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 028813 155 ST-NVEQAFMAMAASIKDR 172 (203)
Q Consensus 155 ~~-~i~~~~~~l~~~~~~~ 172 (203)
+. +++++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999998887654
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=9.2e-32 Score=192.80 Aligned_cols=162 Identities=31% Similarity=0.572 Sum_probs=134.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.+||+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 56799999999999999999999988776666665543 33445556666788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEee
Q 028813 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS 151 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+..++...++..+++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 78877765443 68999999999996543 3445566777777887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028813 152 AKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~ 169 (203)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998764
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.3e-28 Score=172.47 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=122.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (203)
.++.++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+..++ ..+.+||+||++++...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999887766666666566666677777 5678999999999999898999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-------C--CcEEEeecCCC
Q 028813 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKDS 155 (203)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 155 (203)
++|+|++++..... +..+......+.|+++|+||+|+.+.. .+......... + ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999988432211 122222233468999999999996532 23333322222 1 57999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028813 156 TNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~~~ 174 (203)
.|++++|++|.+.+...+.
T Consensus 156 ~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhhhhhcc
Confidence 9999999999998876544
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.4e-28 Score=170.55 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=115.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc-
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (203)
..++|+++|++|+|||||+++|.+........++.+.+.....+..++ ..+.+|||||..++. .....++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998776555555555555566666666 689999999988764 23344554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 80 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.....+.. ..++++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999988543 3456666644 2689999999999854333322 356777888999999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=186.43 Aligned_cols=165 Identities=25% Similarity=0.396 Sum_probs=121.0
Q ss_pred CCceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccccc-eeeeEEEE--------------EEeCCeE
Q 028813 4 EYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYIESYISTI-GVDFKIRT--------------VEQDGKT 56 (203)
Q Consensus 4 ~~~~~~~i~v~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 56 (203)
..++.+||+|+|.+ |||||||+++|.+ ..+...+.+++ +.++.... ...++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35678999999999 9999999999998 44444444443 22222111 1135566
Q ss_pred EEEEEEe-----------------------CCCccccccchhhhcc---------------------CCcEEEEEEECCC
Q 028813 57 IKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIIVYDVTD 92 (203)
Q Consensus 57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 92 (203)
+.+.+|| ++|.+++...+..++. ++|++|+|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5666666667777776 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 93 Q--ESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 93 ~--~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+ .+++.+..|+..+... ...+.|+++|+||+|+.+.+.+ ++.++++.. .+++++++||++|.|++++|++|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 8999999999888654 3356899999999998654433 456667765 47899999999999999999999887
Q ss_pred HH
Q 028813 169 IK 170 (203)
Q Consensus 169 ~~ 170 (203)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.2e-27 Score=170.28 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=112.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCcccccc-chhhhccCCcE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAHG 83 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~ 83 (203)
.+.++|+++|.+|+|||||+++|++..+...+.+ .+.+.. .+.+++. .+.+.+||+||+.++.. .+..++..+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4679999999999999999999998877655543 333333 3555543 57899999999999887 78888999999
Q ss_pred EEEEEECCChh-hHHHHHH-HHHHHHh--hcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHH----------------
Q 028813 84 IIIVYDVTDQE-SFNNVKQ-WLNEIDR--YASDNVNKLLVGNKCDLTANKVVS--YETAKAFAD---------------- 141 (203)
Q Consensus 84 ~i~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~---------------- 141 (203)
+|+|+|+++.. ++..+.. |...+.. ....+.|+++|+||+|+....... .+.+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555544 4444433 234468999999999997543211 111111111
Q ss_pred -----------------Hh--CCcEEEeecCCC------CCHHHHHHHHHHH
Q 028813 142 -----------------EI--GIPFMETSAKDS------TNVEQAFMAMAAS 168 (203)
Q Consensus 142 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~ 168 (203)
.+ ++++++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.1e-27 Score=179.94 Aligned_cols=159 Identities=22% Similarity=0.335 Sum_probs=124.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY 78 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 78 (203)
..+||+++|.+|||||||+++|++..... .+.+|.+ .....+.+.+ .+.+.+||+||++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 45899999999999999999998863321 2334444 4444455433 489999999999988 67788889
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--Ccc----CCHHHHHHHHHHhC---CcE
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--NKV----VSYETAKAFADEIG---IPF 147 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 147 (203)
+.+|++|+|+|++++.+++.+..|...+.... ..+.|+++|+||+|+.+ .+. ...+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998877766553332 34699999999999976 332 44467788888887 799
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q 028813 148 METSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 148 ~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
+++||++ .++.++|..+.+.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999999887654
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=185.69 Aligned_cols=159 Identities=22% Similarity=0.382 Sum_probs=119.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+|+|.+|+|||||+++|.+..+... .++.+ .....+...+ +.+.||||||++.+...+..++..+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999999999998776433 34444 3344455555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+... .+++...... .+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 99999999999988887766533 3334789999999999965432 2323222211 23579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028813 160 QAFMAMAASIKD 171 (203)
Q Consensus 160 ~~~~~l~~~~~~ 171 (203)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=9.9e-28 Score=169.64 Aligned_cols=158 Identities=23% Similarity=0.330 Sum_probs=114.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC-----------ccccccchhh
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSS 76 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~ 76 (203)
.++|+++|.+|+|||||+++|.+..+...+.++.+.... .+... .+.+||+|| .+.+...+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 379999999999999999999998877666665543333 23333 678999999 5566666666
Q ss_pred hccC-CcEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC
Q 028813 77 YYRG-AHGIIIVYDVTDQESFNNV-KQWLNE---------IDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI 145 (203)
Q Consensus 77 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 145 (203)
++.. ++++++++++.+..++..+ ..|... +......+.|+++|+||+|+.... .+..++++..+++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence 6665 6655555555556666655 445432 222233478999999999997654 4567778888886
Q ss_pred c-------EEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 146 P-------FMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 146 ~-------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+ ++++||++|.|++++|++|.+.+.+.+.
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 6999999999999999999999876654
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=3e-27 Score=174.81 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=121.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhc-
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY- 78 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~- 78 (203)
.+.++|+++|.+|+|||||+++|++........++.+.+.....+...+ ..+.+||+||..++... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998776555556666666666666655 78999999998877542 24454
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 79 -RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
..+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+.+.+.+.. ....++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986653 234444433 3689999999999854433332 36777888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.6e-26 Score=185.93 Aligned_cols=164 Identities=22% Similarity=0.423 Sum_probs=125.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
.+.++|+|+|.+|+|||||+++|++..+. ...+|.+ .....+...+ +.+.+|||+|.+.+...+..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccc--eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988754 3444544 4444555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (203)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.+.. ...++..... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 999999999999998888777433 22579999999999986532 2233322211 123469999999999999
Q ss_pred HHHHHHHHHHHHHhccC
Q 028813 160 QAFMAMAASIKDRMASQ 176 (203)
Q Consensus 160 ~~~~~l~~~~~~~~~~~ 176 (203)
++|++|.+.+..+.+..
T Consensus 473 ~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999887665543
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.7e-27 Score=168.29 Aligned_cols=159 Identities=20% Similarity=0.258 Sum_probs=123.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR 79 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 79 (203)
.+.++|+++|++|||||||+++|.+........++.+.+.....+..++ ..+.+||+||...+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3678999999999999999999998766555556666666777777776 789999999988764 23445553
Q ss_pred --CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 80 --GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 80 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+.....+. ...+.++..++++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5899999999875 4455666666643 368999999999985433333 345677788899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028813 158 VEQAFMAMAASIKDRM 173 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~ 173 (203)
++++|++|.+.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999886554
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.8e-26 Score=173.81 Aligned_cols=165 Identities=16% Similarity=0.081 Sum_probs=128.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccc----------
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFR---------- 71 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~---------- 71 (203)
+.+..-.|+++|.+|||||||+|+|++..+.. +..+.++..........+ + .++.+|||||.....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 45677899999999999999999999987653 333333434444444454 4 789999999985433
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEE
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFME 149 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (203)
.....++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+........+....+...++ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4556678899999999999998777777667777755 368999999999997445555666777777775 78999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHh
Q 028813 150 TSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 150 ~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
+||++|.|++++|++|.+.+.+..
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999998886443
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.6e-27 Score=168.24 Aligned_cols=159 Identities=15% Similarity=0.207 Sum_probs=107.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (203)
.+..++|+|+|.+|+|||||+++|++..+.....++.+.+........++ .+.+||+|| .+.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 35679999999999999999999998875444444443333334444444 689999999 66666667
Q ss_pred hhhccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--HHHHH-HHHHhCCcEE
Q 028813 75 SSYYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIPFM 148 (203)
Q Consensus 75 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 148 (203)
..++..+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+...... +.+.+ +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777666 9999999999876655432 2222222 3689999999999976543321 22222 2222357899
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
++||++|.|++++|++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 114
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=1.8e-27 Score=175.72 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------chhhhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY 78 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 78 (203)
.+|+++|.+|||||||+|+|++........++.+.+.....+..++ ..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999999876666667777777788888877 5889999999877653 345566
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 79 --RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
..+|++|+|+|+++.+....+..++ ...+.|+++|+||+|+.+..... .....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l------~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL------FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH------TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH------HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 8899999999999866544433332 23378999999999985433221 12455777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAAS 168 (203)
Q Consensus 157 ~i~~~~~~l~~~ 168 (203)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999876
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.2e-27 Score=165.64 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=114.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (203)
..++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 23344555566677777777 46889999997643211 1135
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
++.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+... .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999887765 34677777666556799999999999854221 11122467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-26 Score=159.65 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG 80 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (203)
.||+++|.+|+|||||+++|.+.... ....++.+.+.....+..++ ..+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 23334445556666676776 5789999999876 34445667899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE 159 (203)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 159 (203)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. +...+++ .+++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999988543221 112222222 368999999999986542 2233444 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q 028813 160 QAFMAMAASI 169 (203)
Q Consensus 160 ~~~~~l~~~~ 169 (203)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 117
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=1.9e-26 Score=172.02 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=122.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY-- 78 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 78 (203)
+.++|+++|++|||||||+++|++........++.+.+.....+.+.+ ..+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999999877666677777777777787777 5689999999887655 455555
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
..+|++++|+|+++... ...|...+.... ..|+++|+||+|+.+....... ...+...++++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999987542 233333333321 2899999999997543332222 66677888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 159 EQAFMAMAASIKDR 172 (203)
Q Consensus 159 ~~~~~~l~~~~~~~ 172 (203)
+++|+++.+.+...
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887644
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=7.2e-27 Score=173.77 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc-
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (203)
+.++|+++|.+|+|||||+++|++........++.+.+.....+ .. ...+.+||+||..++. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 46899999999999999999999876544445555444443333 33 4678999999988765 34455554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 80 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
.+|++++|+|+++.+.. ..|...+.. .+.|+++++||+|+.....+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555543 378999999999985433333 2456778888999999999999999
Q ss_pred HHHHHHHHHHH
Q 028813 159 EQAFMAMAASI 169 (203)
Q Consensus 159 ~~~~~~l~~~~ 169 (203)
+++|++|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=6.3e-27 Score=174.67 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=118.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------chhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSS 76 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 76 (203)
+.++|+++|.+|+|||||+|+|++........++.+.+.....+...+ ..+.+|||||..++.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 358999999999999999999999876656667777777777777766 5788999999877652 1222
Q ss_pred hc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813 77 YY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 77 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
++ ..+|++|+|+|+++.+....+..++... +.|+++|+||+|+.+..... .....+...++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 32 7899999999999866554444333332 68999999999985433221 124567778899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASIK 170 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~ 170 (203)
|.|+++++++|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999877654
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=6.4e-26 Score=160.86 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=110.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (203)
....++|+++|.+|+|||||+++|++.... ...++.+.+........+. .+.+||+|| ...+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 356789999999999999999999987732 2233333333333333333 578999999 55566666
Q ss_pred hhhccCC---cEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhC-Cc
Q 028813 75 SSYYRGA---HGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIG-IP 146 (203)
Q Consensus 75 ~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~-~~ 146 (203)
..++..+ |++++|+|+++..+ ...+..|+... +.|+++|+||+|+.+... ...+....++...+ ++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 6666655 99999999887533 23333344332 689999999999865432 22344455555534 79
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 147 FMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 147 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
++++||++|.|++++|++|.+.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999988753
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=6.3e-27 Score=189.64 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=124.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE------EEe--CCeEEEEEEEeCCCccccccchhh
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT------VEQ--DGKTIKLQIWDTAGQERFRTITSS 76 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~ 76 (203)
....+||+++|.+|||||||+++|.+..+.....++.+.++.... +.. ++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 356799999999999999999999998887777777776665442 112 233578999999999999998999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 156 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
++..+|++|+|+|+++. +.+..|+..+..... +.|+++|+||+|+.+...+..+..++++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999765 445678888876654 58999999999998777778888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028813 157 NVEQAFMAMAASIKDR 172 (203)
Q Consensus 157 ~i~~~~~~l~~~~~~~ 172 (203)
|+++++++|.+.+.+.
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999988654
No 122
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=6.9e-27 Score=176.02 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=116.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---chhhhccCCcE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG 83 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 83 (203)
||+++|..|||||||++++.+...+. ...+|.+.+... + + ..+++.+|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 234566555442 2 2 347899999999999964 36789999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------cCCHHHHHHHHHH----hCCcEEEe
Q 028813 84 IIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-------VVSYETAKAFADE----IGIPFMET 150 (203)
Q Consensus 84 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~----~~~~~~~~ 150 (203)
+|+|||++++ .....+..|+..+.... .+.|+++++||+|+.... .+..++.+++++. ++++++++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 33334444455554433 469999999999997642 3445555666664 57899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 151 SAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 151 Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
||++ .+|.++|..|.+.+.++.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 5899999999887654433
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=5.7e-25 Score=174.21 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYY 78 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 78 (203)
.+|+++|.||||||||+|+|++.... ....++.+.+.....+.+.+ ..+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 34455666666677777877 5688999999653 234456678
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHHhCC-cEEEeecCC
Q 028813 79 RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 154 (203)
+.+|++++|+|+.++.+.. .+..|+.. .++|+++|+||+|+.+. . .... .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754432 23333332 26899999999997432 0 1222 3333 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCC-CCCCCCCcccccCCCCCCCCC
Q 028813 155 STNVEQAFMAMAASIKDRMASQPS-MNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 199 (203)
|.|+.+++++|.+.+.+....... .......++.+.+.++.+||+
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKST 195 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKST 195 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHH
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHH
Confidence 999999999999988754311011 012345678888999888874
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=1.5e-25 Score=162.42 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=107.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc----------cccccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTI 73 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~ 73 (203)
...++|+|+|.+|+|||||+++|++... .....+..+.......+.. .....+.+|||||. +.+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4678999999999999999999998763 2223333333333333321 23367899999994 333444
Q ss_pred hhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH------
Q 028813 74 TSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE------ 142 (203)
Q Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~------ 142 (203)
...++.. +|++++|+|++++.+. ....++..+.. .+.|+++|+||+|+...... ..+.+.+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 5555544 7889999999875432 22334444433 36899999999998654332 11222222222
Q ss_pred -hCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 143 -IGIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 143 -~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.+++++++||++|.|++++|++|.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 457899999999999999999999988654
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=4.2e-24 Score=165.08 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=122.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------chhh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSS 76 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 76 (203)
...++|+++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4668999999999999999999998764333333333344445555554 6889999999754321 1223
Q ss_pred hccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813 77 YYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..... .+....++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 67777788888866544 689999999999865433 2445566667789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 028813 155 STNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~~ 173 (203)
|.|+++++++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886553
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=8e-25 Score=173.97 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=101.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch--------hhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 77 (203)
..++|+|+|.+|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||..++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 357899999999999999999998753 334455566666667777877 789999999987655333 346
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
+..+|++++|+|++++.+++.+..+...+.... +.|+++|+||+|+....... .+.+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence 789999999999998877654333333333332 68999999999997654331 2334433347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIK 170 (203)
Q Consensus 158 i~~~~~~l~~~~~ 170 (203)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.4e-24 Score=163.82 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=111.4
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FR 71 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~ 71 (203)
|++. .+..+|+++|.+|+|||||+|+|++..+.. ...+.++.......+..++ .++.+|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence 6665 566789999999999999999999987643 2333333333333333444 7899999999765 34
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hC-CcEE
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IG-IPFM 148 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~ 148 (203)
.....+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... +...... .+ .+++
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~ 150 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPR 150 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEE
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEE
Confidence 45566789999999999998764432 2333 3454332 36899999999998654320 2222222 23 4789
Q ss_pred EeecCCCCCHHHHHHHHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
++||++|.|+++++++|.+.+.+
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999876643
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=5.5e-25 Score=174.14 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=116.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccch
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 74 (203)
+..++|+++|.+|+|||||+++|++.... ....++++.+.....+..++ ..+.+|||||.. .+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999987653 34445555565566777777 468999999973 332222
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH-HHHHH----hCCcEE
Q 028813 75 S-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-AFADE----IGIPFM 148 (203)
Q Consensus 75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~ 148 (203)
. .++..+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+.+.+....++.. ++... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 367889999999999998776654 46555543 36899999999999765544333332 22222 368999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMAS 175 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 175 (203)
++||++|.|++++|+.+.+.+.++...
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999988776543
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=1.4e-24 Score=172.70 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=120.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (203)
+..++|+++|.+|+|||||+++|++... .....++++.+.....+..++ ..+.+||||| .+.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4678999999999999999999997652 334445555555556666777 4889999999 45554443
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-----CCcEE
Q 028813 75 S-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFM 148 (203)
Q Consensus 75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 148 (203)
. .+++.+|++++|+|++++... ....|...+.. .++|+++|+||+|+.+.+....++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 367889999999999875432 22344444433 36899999999999876666666666666554 58999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813 149 ETSAKDSTNVEQAFMAMAASIKDRMASQ 176 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 176 (203)
++||++|.|++++|+++.+.+.++....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 374 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLRV 374 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999887776543
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.3e-25 Score=162.24 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=105.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC-
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG- 80 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 80 (203)
..+.++|+++|++|+|||||+++|.+..+... +.++.+..+ ....+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45789999999999999999999998775432 223322221 33678999999999998888888877
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCccCC------HHHHHHHHHHhCCc
Q 028813 81 ---AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVS------YETAKAFADEIGIP 146 (203)
Q Consensus 81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 146 (203)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+....... .++...++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888888776443 34579999999999997665432 34456666777789
Q ss_pred EEEeecCCCCC
Q 028813 147 FMETSAKDSTN 157 (203)
Q Consensus 147 ~~~~Sa~~~~~ 157 (203)
++++|++++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998864
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=7.6e-25 Score=171.50 Aligned_cols=160 Identities=15% Similarity=0.156 Sum_probs=116.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS 75 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 75 (203)
+....++|+|+|.+++|||||+++|++..+. .+..++.+.+.....+...+. ..+.+|||||+..+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3467899999999999999999999987763 344455555666666766653 28899999998876544 34
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS 155 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (203)
.++..+|++|+|+|+.... ....|+..+... +.|+++|+||+|+...... +..++++..++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 4788999999999994333 335566666544 6899999999999766543 5566666677899999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028813 156 TNVEQAFMAMAASIKDR 172 (203)
Q Consensus 156 ~~i~~~~~~l~~~~~~~ 172 (203)
.|++++|++|.+.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGD 197 (423)
T ss_dssp TSTTTHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999999988554
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.3e-24 Score=166.05 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhhc---cCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYY---RGA 81 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 81 (203)
.+|+|+|.+|||||||+++|++........+.++.......+.+++. ..+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999976543233333333344444555432 4789999999543 333444444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCC
Q 028813 82 HGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKD 154 (203)
Q Consensus 82 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 154 (203)
|++|+|+|+++ +++++.+..|+.++..+.. ..+|+++|+||+|+.... +..+++...+. ++++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7888888899998877643 478999999999986432 34556666666 7899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASIKDR 172 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~ 172 (203)
+.|+++++++|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988644
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=1.8e-23 Score=166.91 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=112.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhh
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS-------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 76 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 76 (203)
..+..++|+++|.+++|||||+++|++.. ...+..++.+.+.....+..++ ..+.+||+||+++|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34678999999999999999999999866 2233334444444444455555 78999999999999888888
Q ss_pred hccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHh----CCcE
Q 028813 77 YYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEI----GIPF 147 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~ 147 (203)
.+..+|++|+|+|+++ +.+.+.+ ..+.. .+.|+++++||+|+.+... ...+++.++.... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 8999999999999987 3443332 22322 2678899999999975321 1123344555544 5789
Q ss_pred EEeecCCCCCHHHHHHHHHHHHH
Q 028813 148 METSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 148 ~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
+++||++|.|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999876
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=1e-23 Score=167.70 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=115.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-cccc--------chhhh
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSY 77 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 77 (203)
.++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998753 244455666667777777877 678999999987 5432 23456
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
+..+|++|+|+|++++.+.+... ++..+ .++|+++|+||+|+.+. ...+++..+. ..+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 78999999999999887665432 22222 26899999999999653 3444444443 2347899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKD 171 (203)
Q Consensus 158 i~~~~~~l~~~~~~ 171 (203)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=3.5e-24 Score=169.56 Aligned_cols=178 Identities=18% Similarity=0.159 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhhhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYY 78 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 78 (203)
..+|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+.+ ..+.+|||||.. .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987653 22334444444444444444 578999999975 5566677788
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCC
Q 028813 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTN 157 (203)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 157 (203)
..+|++|+|+|+.++.+.... .+...+ ...++|+++|+||+|+.+.... ..++. ..++ +++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l---~~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE-EVAKIL---YRTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH-HHHHHH---TTCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 999999999999886554321 222223 2347899999999998653211 11122 3455 789999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 158 VEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
+.+++++|.+.+.+.. .......+.++.+.+.++.+||+
T Consensus 152 v~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~~nvGKSS 190 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKSS 190 (436)
T ss_dssp HHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECSTTSSHHH
T ss_pred hHHHHHHHHHhcCccc---cccccccCcEEEEEcCCCCCHHH
Confidence 9999999998875321 11123456788888999988874
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=4.4e-22 Score=145.80 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=109.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--cceeeeEEEEEEeCCeEEEEEEEeCCCcc-----------ccc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----------RFR 71 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~ 71 (203)
.+..++|+|+|.+|+|||||+++|++........+ +.+.......+.+++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 45789999999999999999999999887655544 445555666666776 688999999943 333
Q ss_pred cchhhhccCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC------HHHHHHHHHHh
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS------YETAKAFADEI 143 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~ 143 (203)
..+...+..+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.++.+....
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 334445678899999999875432 22222222222111 135899999999986554332 23567778888
Q ss_pred CCcEEEeecCCC-----CCHHHHHHHHHHHHHHHh
Q 028813 144 GIPFMETSAKDS-----TNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 144 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~ 173 (203)
+..++.++...+ .++.+++..+.+.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 888888877654 689999998888776543
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.9e-22 Score=158.14 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=115.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEE----------------EEEe---CCeEEEEEEEeC
Q 028813 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR----------------TVEQ---DGKTIKLQIWDT 64 (203)
Q Consensus 4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~i~D~ 64 (203)
.....++|+++|.+++|||||+++|++.......... ..+.... .... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4567899999999999999999999985432211000 0000000 0000 112368999999
Q ss_pred CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH
Q 028813 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE 142 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~ 142 (203)
||++++...+...+..+|++|+|+|++++.+.....+++..+.... ..|+++++||+|+.+.... ..+++.++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888899999999999999998766666677776665543 2589999999999654321 11222222222
Q ss_pred h---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 143 I---GIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 143 ~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
. +++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2 578999999999999999999987664
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=1.2e-22 Score=153.41 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=110.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCcc---------ccccch
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTIT 74 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~ 74 (203)
..+..+|+|+|++|+|||||+++|++..... ...+.++.......+..++ .++.+|||||.. .+....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 3456689999999999999999999876532 2222222222333344444 688999999986 234445
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecC
Q 028813 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAK 153 (203)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
...+..+|++++|+|+++ -+ ....++. ......+.|+++++||+|+........+.+.++...+++ .++++||+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~--~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WT--PDDEMVL--NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CC--HHHHHHH--HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC-CC--HHHHHHH--HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 667889999999999976 22 2222332 222234689999999999865322223445555555665 69999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028813 154 DSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 154 ~~~~i~~~~~~l~~~~~~ 171 (203)
++.|+++++++|.+.+.+
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999876643
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=2.5e-22 Score=157.72 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=103.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--cceeeeEEEEEEe-------------C--C----eEEEEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ 60 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 60 (203)
+...++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3467999999999999999999998643 2233333 2222233222211 1 1 137899
Q ss_pred EEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHH
Q 028813 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKA 138 (203)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 138 (203)
+||+||+++|...+...+..+|++|+|+|++++....+..+.+..+.... ..|+++++||+|+.+... ...+++.+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 99999999988777777888999999999995421111122222232221 257999999999976543 23455566
Q ss_pred HHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 139 FADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 139 ~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6554 3579999999999999999999987654
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=3.9e-22 Score=153.87 Aligned_cols=160 Identities=17% Similarity=0.132 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhccC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYRG 80 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 80 (203)
.|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+.+|||+|..+ +... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 499999999999999999998776444445555566677788887 5789999999622 2222 224688
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHh---CCcEEEeecCC
Q 028813 81 AHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEI---GIPFMETSAKD 154 (203)
Q Consensus 81 ~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~ 154 (203)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+...... ..+....++..+ +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5556666666666655557899999999998654310 011222333444 24789999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028813 155 STNVEQAFMAMAASIKDR 172 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~ 172 (203)
+.|+++++++|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999999887654
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=1.4e-22 Score=164.76 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=111.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----C------ccccceeeeE--EEEEEe---CCeEEEEEEEeCCCcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIE-----S------YISTIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQE 68 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~------~~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~ 68 (203)
+..+|+|+|+.++|||||+++|+... ... . .+...+.++. ...+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998521 110 0 0011122222 222222 4556899999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--- 145 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 145 (203)
+|...+...+..+|++|+|+|++++.+.+....|..... .+.|+++|+||+|+...+ ......++...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 998888899999999999999998777677667765553 268999999999997643 23344566666676
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 146 PFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 146 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
+++++||++|.|+++++++|.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999988765
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=1.7e-22 Score=149.71 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccc-ceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------- 73 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------- 73 (203)
.+..++|+|+|.+|||||||+++|++... .....++ .+.......+.+++ ..+.+|||||...+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34679999999999999999999998773 3333333 44455555666666 68999999997654322
Q ss_pred --hhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCccCCH-------HHHHHHHHH
Q 028813 74 --TSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGN-KCDLTANKVVSY-------ETAKAFADE 142 (203)
Q Consensus 74 --~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~n-K~D~~~~~~~~~-------~~~~~~~~~ 142 (203)
....++.+|++|+|+|+++... ...+..++..+.... ...|.++++| |+|+.... ... ..+..+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 1225688999999999986222 122223333321111 1356677776 99997432 111 223345555
Q ss_pred hCCc---E--EEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 143 IGIP---F--METSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 143 ~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
.+.. + +++||+++.|++++|.+|.+.+....
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5432 2 78999999999999999999887643
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2e-23 Score=165.45 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=105.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch--------hhh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSY 77 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 77 (203)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999999986542 34445555556556666777 678999999976543332 235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN 157 (203)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (203)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ..+.+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998765443 34444442 36999999999997654332 111111 357899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKDR 172 (203)
Q Consensus 158 i~~~~~~l~~~~~~~ 172 (203)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987643
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=2e-22 Score=159.36 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeC
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQD 53 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (203)
....++|+++|.+++|||||+++|++... ..+..++.+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35679999999999999999999964311 11222344555555555555
Q ss_pred CeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 028813 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLT 126 (203)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~ 126 (203)
+ ..+.||||||+++|...+...+..+|++|+|+|++++.. ++ ...+.+..+. ..+.| +++++||+|+.
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDP 168 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCCCc
Confidence 4 689999999999998888888999999999999987532 11 1122222222 22566 89999999985
Q ss_pred CCc--c----CCHHHHHHHHHHhC------CcEEEeecCCCCCHHHHHH
Q 028813 127 ANK--V----VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 127 ~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 163 (203)
... + ...+++..++...+ ++++++||++|.|+.++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 1 11223344444444 5799999999999999766
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=2.8e-22 Score=162.70 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=114.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CccccceeeeEEEEEEe---CCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 67 (203)
++..+|+++|+.++|||||+++|+... ... +.....++......+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 467899999999999999999997521 110 00111111111122222 455689999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-- 145 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 145 (203)
.+|...+...+..+|++|+|+|++++.+.+....|..... .+.|+++++||+|+...+ ......++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888888999999999999999877777777766543 368999999999996543 22334556666676
Q ss_pred -cEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 146 -PFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 146 -~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
+++++||++|.|+++++++|.+.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4999999999999999999988775
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=3.3e-22 Score=157.13 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=110.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccee--eeEEEEEEe-------------C--C----eEEEEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGV--DFKIRTVEQ-------------D--G----KTIKLQ 60 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 60 (203)
+...++|+++|++++|||||+++|++.. ...+..+..+. .+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4577999999999999999999999643 23333342233 222222211 1 1 137899
Q ss_pred EEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHH
Q 028813 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKA 138 (203)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 138 (203)
+||+||+.+|.......+..+|++|+|+|++++.......+.+..+.... ..|+++++||+|+.+... ...+++.+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 99999999987777777788999999999996421111122222233222 257999999999875432 12234444
Q ss_pred HHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 139 FADE---IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 139 ~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
+... .+++++++||++|.|+++++++|.+.+.
T Consensus 165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 4443 3579999999999999999999987654
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=5.3e-23 Score=153.58 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=93.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-c-------cccceeeeEEEEEEeCCeEEEEEEEeCCCcccc------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-Y-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------ 70 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------ 70 (203)
....++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34679999999999999999999887654333 2 455555566666666666679999999996322
Q ss_pred -ccch-------hhhc-------------cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 71 -RTIT-------SSYY-------------RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 71 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
..+. ..++ ..+|+++++++.+.......-..++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2211 2222 237789999976652211111233444432 68999999999986433
Q ss_pred cCC--HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 130 VVS--YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
... .+.+.+.....+++++.+|+.++.|+.+++++|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 221 1234455556789999999999999999999987654
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=1.1e-22 Score=162.72 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=99.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...+||+++|.+++|||||+++|++... ..+...+.+.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 4579999999999999999999975411 11112233333333344444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN------NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
...+.||||||+++|...+...+..+|++|+|+|++++.... ...+.+..+.... ..|+++|+||+|+.+.
T Consensus 110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 378999999999999998999999999999999999864321 2222222222221 2469999999999764
Q ss_pred ccCCHHHH----HHHHHHh-----CCcEEEeecCCCCCHHHH
Q 028813 129 KVVSYETA----KAFADEI-----GIPFMETSAKDSTNVEQA 161 (203)
Q Consensus 129 ~~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 161 (203)
+....+++ ..+.... +++++++||++|.|+.++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33333333 3333333 357999999999999853
No 149
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=3.1e-22 Score=153.50 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=101.2
Q ss_pred EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813 46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV 114 (203)
Q Consensus 46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~ 114 (203)
....+.+++ +.+.+||++|+++++..|..++++++++|||+|+++ ..++.+...|+..+... ...+.
T Consensus 184 ~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 184 VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 344555654 889999999999999999999999999999999998 45688888888777542 23569
Q ss_pred cEEEEEeCCCCCCCc---------------cCCHHHHHHHHH-----------HhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 115 NKLLVGNKCDLTANK---------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 115 p~ilv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
|++|++||.|+...+ ....++...++. ..++.+++|||+++.||.++|.++.+.
T Consensus 262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 999999999984322 245677777765 346789999999999999999999998
Q ss_pred HHHH
Q 028813 169 IKDR 172 (203)
Q Consensus 169 ~~~~ 172 (203)
+.+.
T Consensus 342 i~~~ 345 (353)
T 1cip_A 342 IIKN 345 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=7e-22 Score=156.52 Aligned_cols=163 Identities=24% Similarity=0.232 Sum_probs=109.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch----------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT---------- 74 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 74 (203)
+..++|+++|++|||||||+++|++.... ....++++.+.....+.+++ ..+.+|||+|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987642 23344444455556677777 467899999975332211
Q ss_pred --hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH-HHHH----HhCCcE
Q 028813 75 --SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-AFAD----EIGIPF 147 (203)
Q Consensus 75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~ 147 (203)
...+..+|++++++|+.++.+.... .+...+.. .+.|+++|+||+|+.+.+....++.. .+.. ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2346778999999999876554332 22222222 36899999999999765543333332 2222 235799
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 148 METSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 148 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+++||++|.|++++|+.+.+.+.++..
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999988877644
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2e-21 Score=142.82 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=109.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc--ceeeeEEEEEEeCCeEEEEEEEeCCCc--------cccccchh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITS 75 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~ 75 (203)
+..++|+++|.+|+|||||+|+|++.........+ .+..........++ ..+.+|||||. ..+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 56799999999999999999999988765443322 33344455566666 78899999995 22322232
Q ss_pred hhc----cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC------CHHHHHHHHHHhC
Q 028813 76 SYY----RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------SYETAKAFADEIG 144 (203)
Q Consensus 76 ~~~----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~ 144 (203)
..+ ..+|++++|+|+++... ...+.+++..+......+.|+++++||.|+.+.... ..+.++.+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 233 89999999999975321 112223333332111125799999999999653211 1134567777788
Q ss_pred CcEEEeecCC-----CCCHHHHHHHHHHHHHHHhc
Q 028813 145 IPFMETSAKD-----STNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 145 ~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~~~~ 174 (203)
..++.++... +.|+.++++.|.+.+.++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 8887777655 57999999999888876533
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=3.7e-23 Score=164.60 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=114.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCC--------ccccccchh
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITS 75 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~ 75 (203)
.+...+|+|+|.+|||||||+|+|++.... ....++.+.+.....+ ......+.+||||| ..++.....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 355789999999999999999999987653 2222333333333333 33336899999999 666777778
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKD 154 (203)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
.++..+|++|+|+|+.++.+.. ..++..+ ....++|+++|+||+|+.+... ...++. ..+. .++++||.+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~--d~~l~~~--l~~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAA--DEEVAKI--LYRTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHH--HHHHHHH--HTTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCCCChH--HHHHHHH--HHHcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeeccc
Confidence 8889999999999987643322 2222222 2235789999999999854321 111111 2333 578999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813 155 STNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 199 (203)
Q Consensus 155 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
|.|+.++++++.+.+... ..........++.+.+.++.+||.
T Consensus 169 g~gv~~L~~~i~~~l~~~---~~~~~~~~~~ki~ivG~~~vGKSs 210 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNI---PETKYNEEVIQFCLIGRPNVGKSS 210 (456)
T ss_dssp CTTHHHHHHHHHTTGGGS---CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred ccchHHHHHHHHhhcccc---cccccccccceeEEecCCCCCHHH
Confidence 999999999998766432 112234456778888888888763
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=1.8e-24 Score=173.42 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (203)
+.++|+++|++++|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 568899999999999999999997665444445544444433343321 2478999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHH---HHHh--CCcEEEeecCCCCCHHH
Q 028813 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAF---ADEI--GIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 160 (203)
|+|++++...+.. ..+......+.|+++++||+|+.+..... ...+..+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986543332 22333334478999999999986532211 1111111 1111 25799999999999999
Q ss_pred HHHHHHHHHH
Q 028813 161 AFMAMAASIK 170 (203)
Q Consensus 161 ~~~~l~~~~~ 170 (203)
++++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987764
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=5.1e-22 Score=159.77 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=85.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC------------------CC----CCccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS------------------YI----ESYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+..+|+|+|.+|+|||||+++|+... .. .+...+.+.......+.+.+ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 457899999999999999999996211 00 00012223333444555555 7899999
Q ss_pred CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
|||+.++...+..++..+|++|+|+|++++........|. .+ ...++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~---~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VC---RLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HH---HTTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HH---HHcCCCEEEEEeCCCCccc
Confidence 9999999998999999999999999999876655544443 22 2336899999999998643
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=9.3e-22 Score=152.13 Aligned_cols=147 Identities=7% Similarity=0.073 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (203)
+|+++|.+++|||||+++|+ ....+.+.....+..++ ..+.+|||||+.+|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 22223333334444444 679999999999987777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCccCCH--HHHHHHHHHhC---CcEEE--eecCC---CCC
Q 028813 90 VTDQESFNNVKQWLNEIDRYASDNVNK-LLVGN-KCDLTANKVVSY--ETAKAFADEIG---IPFME--TSAKD---STN 157 (203)
Q Consensus 90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~ 157 (203)
++. ...+..+++..+... +.|. ++++| |+|+ +.+.... ++++++...++ +++++ +||++ +.|
T Consensus 93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 344445555555433 5676 88999 9998 4322211 34444444433 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 028813 158 VEQAFMAMAASIKDR 172 (203)
Q Consensus 158 i~~~~~~l~~~~~~~ 172 (203)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887654
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.5e-21 Score=154.37 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=104.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------cc---------------------ccceeeeEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IES----------YI---------------------STIGVDFKIRTVEQ 52 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~----------~~---------------------~~~~~~~~~~~~~~ 52 (203)
...++|+++|.+++|||||+++|++... ... .. .+.+.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4679999999999999999999985431 000 00 11122222233333
Q ss_pred CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV- 131 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~- 131 (203)
++ ..+.+|||||+++|...+...+..+|++|+|+|++++.. ....+++..+.... ..|+++|+||+|+.+....
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHH
Confidence 33 689999999999998888888999999999999998643 22334444443321 2368999999999753211
Q ss_pred ---CHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813 132 ---SYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 163 (203)
..+++..++..++ ++++++||++|.|+.++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234555666666 6899999999999998544
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=1.6e-22 Score=159.98 Aligned_cols=155 Identities=18% Similarity=0.190 Sum_probs=103.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------ccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIES-----------------------------YISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|++++|||||+++|++. .+... ...+.+.+.....+...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 36799999999999999999999864 22111 01222333333334333
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhh----cCCC-CcEEEEEeCCCCCCCc
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDN-VNKLLVGNKCDLTANK 129 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~ilv~nK~D~~~~~ 129 (203)
...+.+|||||+.+|...+...+..+|++|+|+|+++ .+++.+..|..+...+ ...+ .|+++++||+|+.+..
T Consensus 83 -~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 83 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred -CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 3789999999999998888889999999999999998 5565443322222111 1113 3689999999996521
Q ss_pred --c----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813 130 --V----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM 163 (203)
Q Consensus 130 --~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 163 (203)
+ ...+++..++..++ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 12344566666665 6799999999999987654
No 158
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=4.4e-21 Score=145.21 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=99.6
Q ss_pred eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCC
Q 028813 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDN 113 (203)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~ 113 (203)
+....+..++ +.+.+||++|+++++..|..++++++++|||+|++ +..++.+...|+..+... ...+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 4445566665 89999999999999999999999999999999665 566777777777766432 2357
Q ss_pred CcEEEEEeCCCCCCCc----------------cCCHHHHHHHHH----------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 114 ~p~ilv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
.|++|++||.|+.+.+ ....++..++.. ..++.++++||+++.||+++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999985432 356666666632 34577899999999999999999999
Q ss_pred HHHHHh
Q 028813 168 SIKDRM 173 (203)
Q Consensus 168 ~~~~~~ 173 (203)
.+.+..
T Consensus 315 ~Il~~~ 320 (327)
T 3ohm_A 315 TILQLN 320 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 987653
No 159
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=155.55 Aligned_cols=163 Identities=21% Similarity=0.337 Sum_probs=90.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccc--------ccceeeeEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (203)
...++|+|+|++|+|||||+++|++..... ... ++.+.......+...+....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654322 211 33333333333444555678999999998 55
Q ss_pred cccchh-------hhccC-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 70 FRTITS-------SYYRG-------------AHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
+..++. .++.. +|+++|+++.. ..++..+. .++..+ ..+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 655554 44433 24566666542 22333332 333333 357899999999999765
Q ss_pred ccCCH--HHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813 129 KVVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174 (203)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 174 (203)
+.+.. +.+..++..++++++++||+++.+ ++.|.++.+.+.+..+
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 54333 455666667789999999999999 9999999988876544
No 160
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=3.8e-21 Score=147.97 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=93.5
Q ss_pred EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813 46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV 114 (203)
Q Consensus 46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~ 114 (203)
....+.+++ +.+.+||++|+++++..|..++++++++|||+|+++ ..++.....|+..+... ...+.
T Consensus 192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 334455555 889999999999999999999999999999999998 67888888888877543 33578
Q ss_pred cEEEEEeCCCCCCCc----------------cCCHHHHHHHHH-----------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 115 NKLLVGNKCDLTANK----------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 115 p~ilv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
|++|++||.|+.+.+ ....++...++. ..++.+++|||+++.||+++|.++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999985321 245666666551 34578999999999999999999999
Q ss_pred HHHHHh
Q 028813 168 SIKDRM 173 (203)
Q Consensus 168 ~~~~~~ 173 (203)
.+.+..
T Consensus 350 ~i~~~~ 355 (362)
T 1zcb_A 350 TILHDN 355 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887554
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=3.1e-21 Score=150.97 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=107.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS-------YIES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (203)
..++|+++|++++|||||+++|++.. +... .....+.+.......+......+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 1000 001112222222333333346899999999999888
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcc---CCHHHHHHHHHHhC----
Q 028813 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV---VSYETAKAFADEIG---- 144 (203)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 144 (203)
.+...+..+|++|+|+|+++....+.. +++..+.. .+.| +++++||+|+.+... ...+++.+++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999985433332 22333332 2578 689999999865221 11234556666665
Q ss_pred -CcEEEeecCCCCC----------HHHHHHHHHHHH
Q 028813 145 -IPFMETSAKDSTN----------VEQAFMAMAASI 169 (203)
Q Consensus 145 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~ 169 (203)
++++++||++|.| +.++++.|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 777777776654
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.3e-21 Score=153.63 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=102.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
...++|+++|++++|||||+++|++. .+... ...+.+.+.....+.. ....+.+|||||+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc--CCeEEEEEECCChH
Confidence 46799999999999999999999863 11100 0122233333333333 33688999999999
Q ss_pred ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC
Q 028813 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG 144 (203)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~ 144 (203)
+|...+...+..+|++|+|+|++++... ...+++..+... +.| +++++||+|+.+.... ..+++.+++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888889999999999999886532 334555555433 577 8899999999743211 1224555666655
Q ss_pred -----CcEEEeecCCCCC
Q 028813 145 -----IPFMETSAKDSTN 157 (203)
Q Consensus 145 -----~~~~~~Sa~~~~~ 157 (203)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999987
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=8.5e-21 Score=154.42 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=106.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------------CeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 69 (203)
.+.++|+++|++++|||||+++|++...........+.+......... .....+.||||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356899999999999999999998754422211111111111111110 0112589999999999
Q ss_pred cccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-------------CH
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-------------SY 133 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-------------~~ 133 (203)
|...+...+..+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99888888999999999999998 55544332 2222 36899999999998642110 00
Q ss_pred H----------HHHHHHHHhC---------------CcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 134 E----------TAKAFADEIG---------------IPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 134 ~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
. ++.....+.+ ++++++||++|.|+++++++|...+....
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111111112 37999999999999999999998876543
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-21 Score=138.10 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=87.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC--
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG-- 80 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 80 (203)
.+.++|+++|++|||||||+++|.+..+.. ...++.+.+ + ....+.+||+||...+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C--CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e--cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999876543 112222211 1 23678999999999888777777765
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCc
Q 028813 81 --AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 81 --~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~D~~~~~ 129 (203)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 889998888888776433 33579999999999997654
No 165
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=4.2e-21 Score=147.23 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=92.2
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKC 123 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~ 123 (203)
..+.+.+||++|+++++..|..++++++++|+|+|++ +..+++....|+..+... ...+.|++||+||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 778898888888877543 23578999999999
Q ss_pred CCCCCcc--C-------------------CHHHHHHHHHH----------------hCCcEEEeecCCCCCHHHHHHHHH
Q 028813 124 DLTANKV--V-------------------SYETAKAFADE----------------IGIPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 124 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
|+.+.+. . ..++...++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 13445555332 124568999999999999999999
Q ss_pred HHHHHHh
Q 028813 167 ASIKDRM 173 (203)
Q Consensus 167 ~~~~~~~ 173 (203)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=4.5e-22 Score=158.47 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=91.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------------------------SYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|++++|||||+++|++. .+.. +.....+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 46789999999999999999999742 1110 0011222222223344444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc-
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK- 129 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~- 129 (203)
..+.||||||+.+|...+...+..+|++|+|+|++++. +|+...++...+......+.| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 68999999999999888888899999999999999863 222112222222222223577 99999999995421
Q ss_pred -c----CCHHHHHHHHHHh-------CCcEEEeecCCCCCHHHHH
Q 028813 130 -V----VSYETAKAFADEI-------GIPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 130 -~----~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 162 (203)
. ...+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1122455555555 3569999999999998866
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-21 Score=159.81 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=103.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-------------------------------ISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|.+++|||||+++|++....... .++.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999865321110 12333333334444444
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCcc
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASDN-VNKLLVGNKCDLTANKV 130 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~-~p~ilv~nK~D~~~~~~ 130 (203)
..+.||||||+.+|...+...+..+|++|+|+|++++.. +....++...+......+ .|+++|+||+|+.+...
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 689999999999998888889999999999999987421 000111222221112223 45999999999976332
Q ss_pred CCHH----HHHHHHHHhC-----CcEEEeecCCCCCHHHHH
Q 028813 131 VSYE----TAKAFADEIG-----IPFMETSAKDSTNVEQAF 162 (203)
Q Consensus 131 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 162 (203)
...+ .+..+....+ ++++++||++|.|+.++.
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 2222 2333444443 589999999999999773
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=2.4e-23 Score=165.70 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=106.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (203)
++..+|+++|++++|||||+++|.+........++.+.+.....+..++ ..+.||||||+..|...+...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987554433333333333222333344 57899999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cCCHH--HHHHHHHHhC--CcEEEeecCCCCCHH
Q 028813 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYE--TAKAFADEIG--IPFMETSAKDSTNVE 159 (203)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~ 159 (203)
+|+|++++...+.. +.+..+. ..+.|+++++||+|+.+.+ .+..+ ....+...++ ++++++||++|.|++
T Consensus 80 LVVda~~g~~~qT~-e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-EAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTH-HHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHH-HHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99999874321111 1222222 2368999999999996431 11100 0000111222 689999999999999
Q ss_pred HHHHHHHH
Q 028813 160 QAFMAMAA 167 (203)
Q Consensus 160 ~~~~~l~~ 167 (203)
+++++|..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999864
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1.3e-21 Score=155.44 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=104.0
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccccceeeeEEEE
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------------------------SYISTIGVDFKIRT 49 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~ 49 (203)
|.. ....++|+++|.+++|||||+++|++. .+.. +...+.+.+.....
T Consensus 1 M~~-~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~ 79 (458)
T 1f60_A 1 MGK-EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK 79 (458)
T ss_dssp -CC-CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE
T ss_pred CCC-CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE
Confidence 553 346799999999999999999999863 1110 00122233333334
Q ss_pred EEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeC
Q 028813 50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNK 122 (203)
Q Consensus 50 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK 122 (203)
+..++ ..+.+|||||+.+|...+...+..+|++|+|+|++++.. ++ ...+++..+.. .+.| +++++||
T Consensus 80 ~~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK 154 (458)
T 1f60_A 80 FETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNK 154 (458)
T ss_dssp EECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEEC
T ss_pred EecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEc
Confidence 44444 789999999999998888889999999999999987531 21 22222222322 2455 8999999
Q ss_pred CCCCCCcc----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHH
Q 028813 123 CDLTANKV----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQA 161 (203)
Q Consensus 123 ~D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 161 (203)
+|+.+... ...+++..++..++ ++++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99964211 11234455555555 68999999999999765
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=7.2e-21 Score=143.64 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccc----------------------ceee-------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------IST----------------------IGVD------------- 44 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~----------------------~~~~------------- 44 (203)
...++|+|+|.+|||||||+++|++..+.+.. .++ ++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999987763211 121 0000
Q ss_pred --------e--EEEEEEeCCeEEEEEEEeCCCcc-------------ccccchhhhccCCcEEE-EEEECCChhhHHHHH
Q 028813 45 --------F--KIRTVEQDGKTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVK 100 (203)
Q Consensus 45 --------~--~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 100 (203)
. ....+... ....+.+|||||.. .+......++..++.+| +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0 00000000 02578999999964 23445666778888766 799998754433333
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH--hC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE--IG-IPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
.++..+ ...+.|+++|+||+|+.+......+.++..... .+ .+++++||++|.|+++++++|.+...
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 344433 345789999999999976543222322211001 12 36889999999999999999987443
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=3.5e-20 Score=132.91 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=97.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccchh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITS 75 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 75 (203)
....+|+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457899999999999999999998763333333333333333333333 567999999642 222222
Q ss_pred hhc---cCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhC--Cc
Q 028813 76 SYY---RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IP 146 (203)
Q Consensus 76 ~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~ 146 (203)
.++ ..++++++++|+.++.+.. .+..|+. ..+.|+++++||+|+...... ..+.+..++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 333 4689999999998765432 2233332 126889999999998653211 1234444444443 57
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 147 FMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 147 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
++++|++++.|+++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999887644
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=1.9e-20 Score=159.41 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=106.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-------YIE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (203)
....++|+++|++++|||||+++|++.. +.. ......++++....+.++.....+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999998631 000 00112222222222233334478999999999999
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC--
Q 028813 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-- 144 (203)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 144 (203)
.......+..+|++|+|+|++++... +..+++..+... ++| +++++||+|+.+.... ..+++..++..++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888889999999999999886432 223444444333 577 7899999999753221 1234556666665
Q ss_pred ---CcEEEeecCCC--------CCHHHHHHHHHHHH
Q 028813 145 ---IPFMETSAKDS--------TNVEQAFMAMAASI 169 (203)
Q Consensus 145 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~~ 169 (203)
++++++||++| .|+.++++.|.+.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 35777777766544
No 173
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=6.7e-20 Score=139.22 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=96.3
Q ss_pred EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCCC
Q 028813 46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDNV 114 (203)
Q Consensus 46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~ 114 (203)
....+..++ +.+.+||++|+++++..|..++++++++|||+|++ +..++.+...|+..+... ...+.
T Consensus 152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 444455544 78999999999999999999999999999999998 677888888877776433 33578
Q ss_pred cEEEEEeCCCCCCCc---------------cCCHHHHHHHH-HHh--------------------------CCcEEEeec
Q 028813 115 NKLLVGNKCDLTANK---------------VVSYETAKAFA-DEI--------------------------GIPFMETSA 152 (203)
Q Consensus 115 p~ilv~nK~D~~~~~---------------~~~~~~~~~~~-~~~--------------------------~~~~~~~Sa 152 (203)
|++|++||.|+.+.+ ....++..++. .++ .+.++++||
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 999999999984311 01344443333 222 377899999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028813 153 KDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 153 ~~~~~i~~~~~~l~~~~~~ 171 (203)
+++.+|+.+|..+.+.+.+
T Consensus 310 ~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999887
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3.3e-19 Score=132.20 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=87.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc-----
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR----- 79 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 79 (203)
...++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.+|||||..++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999987752 23333334445555666666 68999999998877655444433
Q ss_pred ----CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCccCC
Q 028813 80 ----GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 80 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ilv~nK~D~~~~~~~~ 132 (203)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999987644 3222 35666665544322 4899999999986544333
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=2.3e-19 Score=140.14 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=110.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhh---hccCCc
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGAH 82 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d 82 (203)
.|+|+|++|||||||+++|.+........+.++.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998643222222222333344444443 24788999999632 1112222 245789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
.+++++|++ ...+..+..+..++..+.. ...|.++++||+|+... ...+.+.+.....+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 5556666666666544321 24789999999998653 223444455555678999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028813 161 AFMAMAASIKDRMA 174 (203)
Q Consensus 161 ~~~~l~~~~~~~~~ 174 (203)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999986544
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=6.8e-21 Score=155.35 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=81.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG 54 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (203)
...++|+++|.+++|||||+++|++.. ...+..++.+.+.....+..+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 567899999999999999999996421 011112233333333334333
Q ss_pred eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA 127 (203)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~ 127 (203)
...+.||||||+.+|...+...+..+|++|+|+|++++. .+ ......+..+... +.| +++|+||+|+.+
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccc
Confidence 378999999999999888888899999999999998532 11 1112222222222 455 899999999865
Q ss_pred CccCCH----HHHHHHH-HHhCC-----cEEEeecCCCCCHH
Q 028813 128 NKVVSY----ETAKAFA-DEIGI-----PFMETSAKDSTNVE 159 (203)
Q Consensus 128 ~~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 159 (203)
...... .++..+. ...++ +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 322111 2233333 33344 79999999999998
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=6.7e-19 Score=146.03 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=85.0
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCC--C------CC----------CccccceeeeEEEEEEeCCeEEEEEEEeC
Q 028813 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDS--Y------IE----------SYISTIGVDFKIRTVEQDGKTIKLQIWDT 64 (203)
Q Consensus 3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (203)
.+.++..+|+|+|.+++|||||+++|+... . .. +.....+.......+.+.+ +.+.+|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence 345678999999999999999999998311 1 00 0011222222333444454 78999999
Q ss_pred CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
||+.+|...+...+..+|++|+|+|+++.........|.. +.. .+.|+++|+||+|+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999998888889999999999999998777666555553 222 2689999999999864
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=5.9e-19 Score=146.46 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEE-------EEEE---------------------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKI-------RTVE--------------------------- 51 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~--------------------------- 51 (203)
..++|+|+|.+|+|||||+|+|++..... ...+++...... .+..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 56899999999999999999999877533 333333100000 0111
Q ss_pred -------------------eCCeE--EEEEEEeCCCccc---cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028813 52 -------------------QDGKT--IKLQIWDTAGQER---FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID 107 (203)
Q Consensus 52 -------------------~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 107 (203)
.+... ..+.+|||||... .......++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 11000 2589999999654 33456678899999999999998877666555544442
Q ss_pred hhcCCCCcEEEEEeCCCCCCCccCCHH----------HHHH-----HHHH--------hCCcEEEeecC-----------
Q 028813 108 RYASDNVNKLLVGNKCDLTANKVVSYE----------TAKA-----FADE--------IGIPFMETSAK----------- 153 (203)
Q Consensus 108 ~~~~~~~p~ilv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------- 153 (203)
..+.|+++|+||+|+........+ .+.. +... ...+++++||+
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 236789999999998643311110 1111 1111 12479999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHH
Q 028813 154 ---DSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 154 ---~~~~i~~~~~~l~~~~~~~ 172 (203)
++.|+++++.+|.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877544
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=2e-18 Score=139.00 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=79.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------------CccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (203)
.+..+|+|+|++++|||||+++|+...... +...+.+.......+...+ +.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 467899999999999999999998531100 0011111111223344444 7899999
Q ss_pred CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
|||+.+|......++..+|++|+|+|++++..... ..++. .....+.|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~---~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLME---VTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHH---HHTTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHH---HHHHcCCCEEEEEcCcCCcc
Confidence 99999998888889999999999999987643221 22222 22334789999999999864
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=8.5e-20 Score=141.19 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=104.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccce-e--eeEE----------E-------------------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG-V--DFKI----------R------------------------- 48 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~-~--~~~~----------~------------------------- 48 (203)
...+|+|+|.+|||||||+++|++..+.+......+ . .... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999765322211111 0 0000 0
Q ss_pred --------------EEEe-CCeEEEEEEEeCCCcccc-------------ccchhhhccCCcEEEEEEECCChhhHHHHH
Q 028813 49 --------------TVEQ-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVK 100 (203)
Q Consensus 49 --------------~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (203)
.+.+ ......+.+|||||..++ ......++..+|++|+++|..+.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 001235889999997765 455667889999999999875433211 3
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
.|+..+......+.|+++|+||+|+.+......+....+...++.+++.++++.+.++++.+.++..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 4455555555667899999999999765554444444444456688999999998888776655433
No 181
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=5.6e-19 Score=134.25 Aligned_cols=112 Identities=14% Similarity=0.235 Sum_probs=69.6
Q ss_pred EEEEEEeCCCccc-------------cccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813 57 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (203)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK 122 (203)
..+.+|||||... +......++..+|++++|+|+.+.. .......+ +......+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i---~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL---AKEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH---HHHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH---HHHhCCCCCcEEEEEcC
Confidence 4689999999653 3445666788999999999974322 10111122 22223457899999999
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCcEEEeec---CC---CCCHHHHHHHHHHHHHH
Q 028813 123 CDLTANKVVSYETAKAFADEIGIPFMETSA---KD---STNVEQAFMAMAASIKD 171 (203)
Q Consensus 123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~~~~~l~~~~~~ 171 (203)
+|+........+.+.......+..++++++ .+ +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999765432233222111112245666654 44 78899999998887764
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=9.5e-19 Score=144.64 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=81.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------cccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
+...+|+|+|+.|+|||||+++|++....... ....+.......+.... +.+.+|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 56789999999999999999999843211000 11223333333444444 78999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
.++...+..++..+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 9998888889999999999999887544322 234443433 368999999999986
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=5.6e-18 Score=126.10 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=83.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchh-------hh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------SY 77 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~ 77 (203)
...++|+++|.+|+|||||+++|++.... ....++.+.......+...+ ..+.+|||||..++..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987753 22223333333344444554 7899999999876543222 11
Q ss_pred --ccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCccCCH
Q 028813 78 --YRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVSY 133 (203)
Q Consensus 78 --~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ilv~nK~D~~~~~~~~~ 133 (203)
...+|+++||+|++... +... ..|+..+......+ .|+++|+||+|+...+....
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 24689999999986532 3222 35666665443322 69999999999876544333
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=4.7e-19 Score=138.11 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE--EE-------------------eCC-eEEEEEEEeCCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT--VE-------------------QDG-KTIKLQIWDTAG 66 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g 66 (203)
++|+++|.+|+|||||+|+|++........+.++.+..... +. +++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987633233332222222221 11 122 246899999999
Q ss_pred ccc----cccch---hhhccCCcEEEEEEECCCh
Q 028813 67 QER----FRTIT---SSYYRGAHGIIIVYDVTDQ 93 (203)
Q Consensus 67 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 93 (203)
... ...+. ...++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 12222 2356899999999999875
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=1.3e-17 Score=138.35 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=83.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (203)
++..+|+|+|.+|+|||||+++|+.. .... . ..+..+.......+.+.+ ..+.+|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 57889999999999999999999842 1110 0 011122222233444554 78999999999
Q ss_pred cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.++...+...+..+|++|+|+|++++.+......|.. +.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 9998888889999999999999998766655554443 322 26899999999998643
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=3.9e-19 Score=134.07 Aligned_cols=163 Identities=22% Similarity=0.321 Sum_probs=86.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------ccceeeeEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD-SYIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (203)
+..++|+|+|++|+|||||++.|.+. ..+.... ++.........+...+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 3333221 11111111112222344578999999997 44
Q ss_pred cccchh-------hhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 70 FRTITS-------SYYR-------------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 70 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
+..... .++. .+++++|+.+.+.. ++..+. ...+.... ...++++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 444433 2222 23445666554321 122211 12233333 357899999999986543
Q ss_pred cC--CHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 130 VV--SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
+. ..+.+.+++..++++++++||+++ |++++|.++.+.+.+..
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 32 235677788889999999999999 99999999999887543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=3.7e-17 Score=135.82 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=83.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------ccccceeeeEEEEEEeC-----CeEEEEEE
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--YIES----------------YISTIGVDFKIRTVEQD-----GKTIKLQI 61 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i 61 (203)
.++..+|+|+|..++|||||+++|+... +... .....++......+.+. +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4578899999999999999999997421 1100 01112222222233332 23478999
Q ss_pred EeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
|||||+.+|...+...+..+|++|+|+|+++.........|.. +. ..+.|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 9999999998888889999999999999998765444443432 22 23689999999999854
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.8e-18 Score=130.59 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-hHHHHH
Q 028813 23 CLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVK 100 (203)
Q Consensus 23 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 100 (203)
+|+.++..+.+. ..+.+|.+..+ ...+..++ .+.+||+ ++++..++..++.++|++|+|+|++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 678888888877 77788888443 33332222 6889999 8889999999999999999999999987 688888
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHH
Q 028813 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMA 166 (203)
Q Consensus 101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~ 166 (203)
.|+..+.. .+.|+++|+||+|+.+.+.+ ++.++++..++ ++++++||++|.|++++|.++.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99987754 36899999999999654332 44667777777 8999999999999999999864
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=133.09 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=79.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------ 71 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------ 71 (203)
+-.++|+|+|++|+|||||++.|.+...+... .++.........+...+....+++||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45688999999999999999999987653111 1111111111111223333578999999975431
Q ss_pred -c------------------chhhhccCCc--EEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 72 -T------------------ITSSYYRGAH--GIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 72 -~------------------~~~~~~~~~d--~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
. +...++.+++ +++|+++.+. .++... ..|+..+. .+.|+++|+||+|+...+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 1 1122344444 4444444331 122222 24555553 268999999999987655
Q ss_pred cCCH--HHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813 130 VVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
.+.. ..+.+++..++++++++|+.++.++.++|..|...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 4433 556777788899999999999999998887776543
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=1.3e-16 Score=128.97 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=84.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC----------------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDS----------------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (203)
+.=+|+|+|+.++|||||..+|+... .+.+.....++......+.+++ +.+.|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 55689999999999999999996211 0112233334444455566666 78999999
Q ss_pred CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
||+..|.......++-+|++|+|+|+.++-..+....|..... .+.|.++++||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9999999999999999999999999998766555555544332 27899999999998543
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=1.7e-16 Score=121.59 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccccc--
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERFR-- 71 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~-- 71 (203)
++|+++|.+|+|||||+|+|++........+..+.+.....+.+++.. ..+.+||+||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999876433333333333333334444421 478999999976542
Q ss_pred --c---chhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHH-------------------------------
Q 028813 72 --T---ITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNE------------------------------- 105 (203)
Q Consensus 72 --~---~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 105 (203)
. .....++.+|++++|+|+++. +.+..+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 1 223347899999999999752 122222111111
Q ss_pred ---------HH-------------------hh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813 106 ---------ID-------------------RY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK 153 (203)
Q Consensus 106 ---------i~-------------------~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
+. .+ ....+|+++++|+.|..-......+.+++++...+++++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 11 01 12258999999999964211233566777888889999999965
No 192
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=3.8e-17 Score=126.75 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=99.4
Q ss_pred EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813 46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV 114 (203)
Q Consensus 46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~ 114 (203)
....+.+++ +.+.+||++|+++++..|..++++++++|||+|+++ ..++..+..|+..+... ...+.
T Consensus 208 ~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 208 FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp EEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred EEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 344556665 899999999999999999999999999999999998 88999999999888654 34578
Q ss_pred cEEEEEeCCCCCCCcc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEee
Q 028813 115 NKLLVGNKCDLTANKV---V---------------------------SYETAKAFA-----DE--------IGIPFMETS 151 (203)
Q Consensus 115 p~ilv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S 151 (203)
|++||+||.|+...+. . ..+....++ .. ..+.++++|
T Consensus 286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS 365 (402)
T 1azs_C 286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC 365 (402)
T ss_dssp CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence 9999999999843221 1 134444442 22 246788999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 028813 152 AKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 152 a~~~~~i~~~~~~l~~~~~~~~ 173 (203)
|+++.||+++|.++.+.+.+..
T Consensus 366 A~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 366 AVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999998886553
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=6.8e-18 Score=121.94 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=94.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceee--------------eEEEEEEe----------------CCeE
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVD--------------FKIRTVEQ----------------DGKT 56 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 56 (203)
...+|+++|.+|||||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998642111100000000 01111111 0123
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
.++.+|||+|..... ..+....+.+++|+|+...... ...+.... +.|.++|+||+|+.+......+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHHH
Confidence 578899999841111 1111356889999998765321 11111111 468899999999854322345556
Q ss_pred HHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 137 KAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 137 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
....... +++++++|+++|.|+++++++|.+.+..+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 5555554 478999999999999999999998876553
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=2.8e-18 Score=132.30 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=93.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccc----------------------eee--------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY------ISTI----------------------GVD-------------- 44 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~----------------------~~~-------------- 44 (203)
..++|+|+|.+|||||||+++|++..+.+.. .++. +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999987763211 1110 000
Q ss_pred -------eEEEEEEeC-CeEEEEEEEeCCCccc-------------cccchhhhccCCc-EEEEEEECCChhhHHHHHHH
Q 028813 45 -------FKIRTVEQD-GKTIKLQIWDTAGQER-------------FRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQW 102 (203)
Q Consensus 45 -------~~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 102 (203)
.....+.+. .....+.+|||||... +......++...+ ++++|+|++....-.. +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 000001100 0125789999999532 3344555665555 5555667664322112 2
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH--HHHhC-CcEEEeecCCCCCHHHHHHHHHH
Q 028813 103 LNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF--ADEIG-IPFMETSAKDSTNVEQAFMAMAA 167 (203)
Q Consensus 103 ~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 167 (203)
...+......+.|+++|+||+|+.+......+..+.. ....+ .+++.+||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2233444455789999999999975433222221110 00123 35788999999999999999876
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=1e-17 Score=129.18 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=70.4
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
+.+.||||||... .....+..+|++++|+|....+....+.. .....|.++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 6789999999533 23344588999999999876554322211 01136889999999985432211 111
Q ss_pred HHHHHH---h-------CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 137 KAFADE---I-------GIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 137 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.++... . +.+++++||++|.|+++++++|.+.+...
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 222221 1 47899999999999999999999887653
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-15 Score=115.25 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=104.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhcc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYR 79 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 79 (203)
...+|+++|.||||||||+|+|++........+.++.+.....+.+.+ .++.++|+||...-. ......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999999776666667778888888888888 678899999953211 11233467
Q ss_pred CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC--------CccCCHHHHHHHHHHhCCcEEEe
Q 028813 80 GAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA--------NKVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 80 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+|++++|+|++++... +.+...+..+.. .-...|.++++||.|... ......++++.+...+.+..-++
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 89999999999987532 222222222211 113467888999999632 12355667777777766644444
Q ss_pred ecCCCCCHHHHHH
Q 028813 151 SAKDSTNVEQAFM 163 (203)
Q Consensus 151 Sa~~~~~i~~~~~ 163 (203)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 4445556666554
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.5e-16 Score=115.27 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=92.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeE------------EEEEEeC-Ce------------------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK------------IRTVEQD-GK------------------ 55 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 55 (203)
+.++|+|+|.+|||||||+++|+...+.....++...++. ...+..+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999876443333333222211 1111111 10
Q ss_pred -EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813 56 -TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 56 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 134 (203)
...+.++|++|.-.. ...+-...+..+.++|+....... ......+ +.|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 114566676663111 011112344566777753221110 0011111 4688999999998654334556
Q ss_pred HHHHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 135 TAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 135 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
....++..+ +++++++||++|.|++++|++|.+.+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 666666654 57899999999999999999999887653
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=5.7e-16 Score=131.02 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=84.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--C--------------CCccccceeeeE--EEEEE------------eCCe
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--I--------------ESYISTIGVDFK--IRTVE------------QDGK 55 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~~~~--~~~~~------------~~~~ 55 (203)
++..+|+|+|++++|||||+++|+.... . .+.....++... ...+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 5678999999999999999999986311 0 001111111111 22222 1334
Q ss_pred EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
.+.+.+|||||+.+|...+..+++.+|++|+|+|+.++.+.+....|..... .+.|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 6899999999999999999999999999999999999877776655554332 368999999999985
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.63 E-value=1.7e-15 Score=116.71 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 69 (203)
++|+++|.+|+|||||+++|++........+..+.........+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6799999999999999999997543222222222222222222221 235799999999765
Q ss_pred cc-------cchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 028813 70 FR-------TITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNE--------------------------- 105 (203)
Q Consensus 70 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~--------------------------- 105 (203)
.. ......++.+|++++|+|+.+. +....+..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 1123357899999999999751 111111100000
Q ss_pred ------------HHh-------------------h-cCCCCcEEEEEeCCCC--CCC-ccCCHHHHHHHHHHhCCcEEEe
Q 028813 106 ------------IDR-------------------Y-ASDNVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 106 ------------i~~-------------------~-~~~~~p~ilv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
+.. + ....+|+++++||.|. .+. .....+.++.++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 0 0124799999999984 222 1234566788888889999999
Q ss_pred ecCCCCCHHHH
Q 028813 151 SAKDSTNVEQA 161 (203)
Q Consensus 151 Sa~~~~~i~~~ 161 (203)
||+...++.++
T Consensus 242 SAk~E~el~eL 252 (368)
T 2dby_A 242 SARLEAELAEL 252 (368)
T ss_dssp CHHHHHHHHTS
T ss_pred echhHHHHHHh
Confidence 98875544443
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=3.1e-16 Score=127.00 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=80.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCccccceeeeEEEE----------------------E---------
Q 028813 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRT----------------------V--------- 50 (203)
Q Consensus 5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~--------- 50 (203)
.+..++|+|+|.+|+|||||+|+|++..+. ....+++........ +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 356789999999999999999999998763 233332211000000 0
Q ss_pred -----EeCCe-EEEEEEEeCCCccc-----------cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q 028813 51 -----EQDGK-TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN 113 (203)
Q Consensus 51 -----~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 113 (203)
.+.+. ...+.||||||... +......++..+|++++|+|+++.........++..+. ..+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcC
Confidence 00000 02588999999764 34556667889999999999987544444455555443 335
Q ss_pred CcEEEEEeCCCCCCCc
Q 028813 114 VNKLLVGNKCDLTANK 129 (203)
Q Consensus 114 ~p~ilv~nK~D~~~~~ 129 (203)
.|+++|+||+|+....
T Consensus 219 ~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGEEEEEECGGGSCHH
T ss_pred CCEEEEEECCCccCHH
Confidence 8999999999986543
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=121.62 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=63.2
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
+.+.++||+|.... .......+|++++|+|+..+.....+.. .+ . ..|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l--~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I--EMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H--hcCCEEEEeeecCCCchhH-HHHH
Confidence 57899999995421 2345678999999999987543222211 11 1 3578999999998532111 0112
Q ss_pred HHHHH----------HhCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 137 KAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 137 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
..+.. .+..+++.+|+++|.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22221 124578999999999999999999987654
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=3.7e-16 Score=128.67 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCC----------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD--SYI----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
.-||+|+|+.++|||||..+|+.. ... .+.....++......+.+++ +.+.++||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 347999999999999999999731 110 01111223333333344444 7899999999999
Q ss_pred cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (203)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~ 127 (203)
|.......++-+|++|+|+|+...-..+....|...... +.|.++++||+|...
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence 999899999999999999999876554444444443332 688899999999754
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.59 E-value=8.6e-16 Score=117.82 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=66.2
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--H
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--E 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~--~ 134 (203)
+++.||||||...... .....+|++++|+|+...+....+... . .+.|.++|+||+|+.+...... +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 6799999999654332 246889999999998765432111110 0 1357899999999864321110 1
Q ss_pred HHHHHHHHh-------CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813 135 TAKAFADEI-------GIPFMETSAKDSTNVEQAFMAMAASIKDR 172 (203)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 172 (203)
.+....... ..+++++||++|.|+++++++|.+.+...
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~ 262 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL 262 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 222222222 35789999999999999999999877533
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=3.3e-14 Score=118.53 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=82.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--------C----------CCCccccceeeeEEEEEEeCC-----eEEEEEEE
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--------Y----------IESYISTIGVDFKIRTVEQDG-----KTIKLQIW 62 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 62 (203)
++.=+|+|+|+.++|||||..+|+... . ..+.....++......+.+.+ .++.+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 566789999999999999999987311 0 112222233333334444432 35899999
Q ss_pred eCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (203)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~ 126 (203)
||||+..|.......++-+|++|+|+|+...-..+...-|.+.... +.|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 9999999999899999999999999999987655555555554433 68999999999974
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.57 E-value=3.6e-15 Score=123.61 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=96.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeee---------------------------------------
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDF--------------------------------------- 45 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~--------------------------------------- 45 (203)
....+|+|+|.+++|||||+|+|++..+ +......+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999765 322211111000
Q ss_pred -----------EEEEEEeCCeEEEEEEEeCCCcccc-------------ccchhhhc-cCCcEEEEEEECCChhhHHHHH
Q 028813 46 -----------KIRTVEQDGKTIKLQIWDTAGQERF-------------RTITSSYY-RGAHGIIIVYDVTDQESFNNVK 100 (203)
Q Consensus 46 -----------~~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 100 (203)
....+...+ ...+.|+||||.... ......++ ..+|++++|+|++.+.......
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 001111111 125789999995431 12223333 5789999999998653322222
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-H-HHHhC-CcEEEeecCCCCCHHHHHHHHHHH
Q 028813 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-F-ADEIG-IPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
.++ ......+.|+++|+||+|+.+........... . ....+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll---~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIA---KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHH---HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHH---HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 223 33344578999999999997654433221110 0 00112 357889999999999999998763
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=3.5e-14 Score=104.99 Aligned_cols=112 Identities=14% Similarity=-0.010 Sum_probs=68.3
Q ss_pred EEEEEEeCCCccccccchh------hhccCCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813 57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLN-EIDRYASDNVNKLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~p~ilv~nK~D~~~~~ 129 (203)
+++.+|||||..+...... ..+.. +++|+++|+.............. ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999876533211 23455 88999998754322222211111 1111112257999999999986533
Q ss_pred cCCHHHHHH----------------------------HHHHhC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813 130 VVSYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD 171 (203)
Q Consensus 130 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 171 (203)
.. +.+.+ +...++ ++++++||+++.|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11 11111 123333 489999999999999999999887753
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=5.2e-14 Score=107.62 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=64.4
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
.++.|+||+|...-. ......+|.+++++|+...+..+.+.... . ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence 688999999965321 23457899999999986543321111111 1 235577789999754332222223
Q ss_pred HHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813 137 KAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIK 170 (203)
Q Consensus 137 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 170 (203)
+.+... +..+++.+|++++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1357899999999999999999988765
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=1.7e-13 Score=103.32 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=77.5
Q ss_pred ccccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHHHHHhC
Q 028813 67 QERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEIG 144 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 144 (203)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .+...+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5567777788999999999999999886 78888889887754 368999999999996543212 344555666778
Q ss_pred CcEEEeecCCCCCHHHHHHHH
Q 028813 145 IPFMETSAKDSTNVEQAFMAM 165 (203)
Q Consensus 145 ~~~~~~Sa~~~~~i~~~~~~l 165 (203)
++++++||++|.|++++++.+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 999999999999999999884
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=2.3e-12 Score=99.91 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=62.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc-
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER- 69 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~- 69 (203)
...+++++|++|||||||+|+|++... .....++.+.+.....+.+.+.. ..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999998765 44555555555556666665421 3688999999543
Q ss_pred ------cccchhhhccCCcEEEEEEECCC
Q 028813 70 ------FRTITSSYYRGAHGIIIVYDVTD 92 (203)
Q Consensus 70 ------~~~~~~~~~~~~d~~i~v~d~~~ 92 (203)
+...+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445688999999999863
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=96.58 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=69.7
Q ss_pred CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHH----HHhhc-CCCCcEEEEEeCC-CCCCCccCCHHHHHH
Q 028813 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE----IDRYA-SDNVNKLLVGNKC-DLTANKVVSYETAKA 138 (203)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~~ 138 (203)
+|+..++..|+.|+.+.|++|||+|.+|.+..+ ....+.. +.... ..+.|++|++||. |+. ..+...++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 377888999999999999999999999875433 3333322 22221 2578999999995 663 3345454443
Q ss_pred HHH----HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 139 FAD----EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 139 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
... ...+.+..|||++|+|+.+.++||.+.+..++
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 322 13467999999999999999999987775443
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=104.21 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=52.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR 71 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 71 (203)
..++|+++|.+|+|||||+++|++........++.+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999987665445555555555555555442 2358999999976543
Q ss_pred c-------chhhhccCCcEEEEEEECCCh
Q 028813 72 T-------ITSSYYRGAHGIIIVYDVTDQ 93 (203)
Q Consensus 72 ~-------~~~~~~~~~d~~i~v~d~~~~ 93 (203)
. .+..+++.+|++++|+|+.+.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 2 455678899999999998754
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.6e-12 Score=93.20 Aligned_cols=108 Identities=8% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CCCccccccchhhhccCCcEEEEEEECCChhhHH---HHHHHHHHHHhh-cCCCCcEEEEEeC-CCCCCCccCCHHHHHH
Q 028813 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN---NVKQWLNEIDRY-ASDNVNKLLVGNK-CDLTANKVVSYETAKA 138 (203)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ilv~nK-~D~~~~~~~~~~~~~~ 138 (203)
.+|+...+..|+.|+.+.|++|||+|.+|.+.++ ++.+....+... ...+.|++|++|| -|+.. .+...++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3567888999999999999999999999886543 222222233222 2347899999997 57743 344444433
Q ss_pred HHH----HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813 139 FAD----EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 139 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 173 (203)
... ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 322 12467999999999999999999998876443
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=4.2e-11 Score=92.59 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=73.2
Q ss_pred CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH----HHH
Q 028813 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FAD 141 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~ 141 (203)
..++|...+..+++.+|++++|+|+.++. ..|...+..... ++|+++|+||+|+.+.. ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45678888888899999999999999864 345555655443 68999999999996543 23333333 355
Q ss_pred HhCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 028813 142 EIGI---PFMETSAKDSTNVEQAFMAMAASI 169 (203)
Q Consensus 142 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 169 (203)
..++ +++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999987653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=5.4e-12 Score=97.61 Aligned_cols=140 Identities=13% Similarity=0.182 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC------CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------h
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------T 74 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~ 74 (203)
.+++++|.+|+|||||+|+|++. .......+.++ .....+..+. .+.++||||....... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 22223333333 2333344443 3789999995432211 1
Q ss_pred hhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 75 SSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 75 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
..++ ...+.++++++......+..+. .+......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 1122 6678999999974321110110 022223346899999999998654433 23344556667777666666
Q ss_pred CCCCCH
Q 028813 153 KDSTNV 158 (203)
Q Consensus 153 ~~~~~i 158 (203)
....++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 554444
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.11 E-value=4.8e-11 Score=89.00 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=84.2
Q ss_pred EeCCCcc-ccccchhhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH
Q 028813 62 WDTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA 138 (203)
Q Consensus 62 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 138 (203)
-..||+- .........+..+|++++|+|+.++.+.. .+.+++ .++|.++|+||+|+.+... .+....
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKE 73 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHH
Confidence 3567764 33444566789999999999999887643 333332 3689999999999965321 122334
Q ss_pred HHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccCCCCCCCC
Q 028813 139 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS-QPSMNNARPPTVQIKGQPVAQKS 198 (203)
Q Consensus 139 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
+....+++++.+||.++.|++++++.+.+.+...... ........+..+.+.+.|+.+||
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKS 134 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS 134 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchH
Confidence 4445578999999999999999999988887654221 11112345567777888888876
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=2.5e-10 Score=89.20 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=70.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--cceeeeEEEEEEe--CCeEEEEEEEeCCCccccc-----------
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQ--DGKTIKLQIWDTAGQERFR----------- 71 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~----------- 71 (203)
..++++|+|++|+|||||++.|.+..+...... ..+.......+.. .+....++++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 346799999999999999999998654221111 1111111222222 2223478899998753210
Q ss_pred ---cchhh----h---------ccC--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813 72 ---TITSS----Y---------YRG--AHG-IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS 132 (203)
Q Consensus 72 ---~~~~~----~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~ 132 (203)
..+.. + ... +|+ ++|+.|...+-+... +..++.+. .+.|+|+|+||+|.....+..
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHH
Confidence 01111 1 112 233 555666554332222 22233333 578999999999986543321
Q ss_pred --HHHHHHHHHHhCCcEEEeec
Q 028813 133 --YETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~Sa 152 (203)
...+.......+++++.+|.
T Consensus 196 ~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHcCCcEEecCC
Confidence 11122222335677777774
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.06 E-value=1.9e-10 Score=91.95 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=84.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh------cCCCC---CC-cccc-----------ceeeeEEEEEE-------------e
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFA------DDSYI---ES-YIST-----------IGVDFKIRTVE-------------Q 52 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~------~~~~~---~~-~~~~-----------~~~~~~~~~~~-------------~ 52 (203)
....|+|+|.+||||||++++|. +.... .. +.+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 33210 00 0000 00111110000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-chhh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCC
Q 028813 53 DGKTIKLQIWDTAGQERFRT-ITSS---Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDL 125 (203)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~D~ 125 (203)
....+++.|+||||...... .+.. + +..+|.+++|+|+........ ....+.. ..|+ .+|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence 00236889999999754221 1111 1 226899999999987543211 1222222 1464 888999998
Q ss_pred CCCccCCHHHHHHHHHHhCCcE------------------EEeecCCCCC-HHHHHHHHHHH
Q 028813 126 TANKVVSYETAKAFADEIGIPF------------------METSAKDSTN-VEQAFMAMAAS 168 (203)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 168 (203)
..... .........++|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53321 1222333455544 3468889988 99998888765
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=1.2e-10 Score=90.10 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=79.3
Q ss_pred CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH----HH
Q 028813 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----AD 141 (203)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~ 141 (203)
.+++|.+....++..++++++|+|+.++.+ .|...+..... +.|+++|+||+|+.+.. ...+...++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467788888888899999999999998764 34444444333 68999999999997543 223333333 45
Q ss_pred HhCC---cEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCC
Q 028813 142 EIGI---PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS 198 (203)
Q Consensus 142 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
..++ .++.+||++|.|++++++.|.+... ...+.+.+.++.+||
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~-------------~~~i~~vG~~nvGKS 176 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE-------------GGDVYVVGCTNVGKS 176 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT-------------TSCEEEECCTTSSHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc-------------cCcEEEEcCCCCchH
Confidence 5566 6899999999999999999876542 123555566666654
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=6e-10 Score=82.53 Aligned_cols=136 Identities=19% Similarity=0.181 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cccceeeeEEEEEEeCCe--EEEEEEEeCCCcccccc-----
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRT----- 72 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~----- 72 (203)
.++++|+|++|+|||||++.|.+...+... .+. ........+..... ...++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999874432211 000 00011111222221 23678999998432100
Q ss_pred -ch----------------------hhhccCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 73 -IT----------------------SSYYRGAHGIIIVYDVT-DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 73 -~~----------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
.. +..+..+++.++++|.. .+-.... .+.+..+ ... .++++|++|+|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCH
Confidence 00 00122357888889854 2222111 2222233 333 799999999998654
Q ss_pred ccC--CHHHHHHHHHHhCCcEEE
Q 028813 129 KVV--SYETAKAFADEIGIPFME 149 (203)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~ 149 (203)
.+. ....+......+++.+++
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHcCccccC
Confidence 332 112334444566777664
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=1.4e-11 Score=95.17 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI-------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------- 73 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------- 73 (203)
.+++++|.+|+|||||+|+|++.... ....+.+ +.....+.... .+.++||||.......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT--TLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCe--ecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999975311 1222222 22333344443 2789999996433211
Q ss_pred hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813 74 TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 74 ~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
...+ ....+.++++++.........+ ..+......+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 1111 3567888999987422110010 0022223346899999999998654432 2334455556666555554
Q ss_pred c
Q 028813 152 A 152 (203)
Q Consensus 152 a 152 (203)
+
T Consensus 311 ~ 311 (368)
T 3h2y_A 311 P 311 (368)
T ss_dssp H
T ss_pred h
Confidence 4
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.93 E-value=1.2e-08 Score=79.73 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=84.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc-ceeeeE--EEEEEeCCeEEEEEEEeCCCccccccchhhh-----cc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYIST-IGVDFK--IRTVEQDGKTIKLQIWDTAGQERFRTITSSY-----YR 79 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 79 (203)
...++|+|++|||||||+|.+.+...+...... .+.+.. ...+... ....+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 357999999999999999999985432221111 011100 0111111 11257899999854221111111 23
Q ss_pred CCcEEEEEEECC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCccCCHH----HHHHHH----HH
Q 028813 80 GAHGIIIVYDVT--DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT-------ANKVVSYE----TAKAFA----DE 142 (203)
Q Consensus 80 ~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~-------~~~~~~~~----~~~~~~----~~ 142 (203)
..+..++ ++.. ..... .....+.. .+.|+++|.||.|+. .-+..... .++++. .+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3455554 7765 32221 11222222 267999999999963 11112222 233332 12
Q ss_pred hC---CcEEEeec--CCCCCHHHHHHHHHHHHHHHh
Q 028813 143 IG---IPFMETSA--KDSTNVEQAFMAMAASIKDRM 173 (203)
Q Consensus 143 ~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~ 173 (203)
.+ ..++.+|+ ..+.|++++.+.|.+.+.+..
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 22 35788999 555679999999988775543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.64 E-value=2.8e-08 Score=74.06 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=36.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (203)
...++++++|.||+|||||+|+|.+... .....+.++.. ...+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999998663 22223332222 22233333 57899999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=3.5e-09 Score=78.09 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=61.2
Q ss_pred CCccc-cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh
Q 028813 65 AGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 143 (203)
Q Consensus 65 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 143 (203)
||+-. ........+.++|++++|+|+.++.+.... .+. .. ++|.++|+||+|+.+... .+....+....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence 55432 223455667899999999999988654211 011 12 689999999999965321 12333444556
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHH
Q 028813 144 GIPFMETSAKDSTNVEQAFMAMAAS 168 (203)
Q Consensus 144 ~~~~~~~Sa~~~~~i~~~~~~l~~~ 168 (203)
+.++ .+|+.++.|++++++.+.+.
T Consensus 75 g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 7888 99999999999998876543
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.61 E-value=6.7e-08 Score=75.93 Aligned_cols=90 Identities=20% Similarity=0.150 Sum_probs=53.0
Q ss_pred EEEEEEeCCCccccccch----h--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTIT----S--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
+++.|+||+|........ . ......|.+++|+|+........ ....+... -.+..+|+||+|.....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSSH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcccc-
Confidence 678999999954322111 1 11235789999999886543222 12222221 23567889999975432
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 131 VSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
..........++|+..++. |+++
T Consensus 256 ---G~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 256 ---GGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp ---HHHHHHHHTTCCCEEEEEC--SSST
T ss_pred ---cHHHHHHHHHCCCEEEEEc--CCCh
Confidence 3344555567888887775 5443
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.55 E-value=7.3e-08 Score=75.87 Aligned_cols=83 Identities=20% Similarity=0.124 Sum_probs=47.8
Q ss_pred EEEEEEeCCCccccccch----hh--hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028813 57 IKLQIWDTAGQERFRTIT----SS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-N-KLLVGNKCDLTAN 128 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ilv~nK~D~~~~ 128 (203)
+++.|+||||........ .. .+..+|.+++|+|+..... .......+ .. .. | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence 678999999965421111 11 1236899999999876532 11112222 22 24 5 7889999997432
Q ss_pred ccCCHHHHHHHHHHhCCcEEEe
Q 028813 129 KVVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
. .....+....+.++..+
T Consensus 254 ~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 G----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----HHHHHHHHHSSCCEEEE
T ss_pred h----HHHHHHHHHHCCCEEEe
Confidence 1 22334556667776555
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.54 E-value=2.9e-08 Score=73.20 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (203)
++++++|.+|+|||||+|+|.+..... ...+..+ .....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGIT--KGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCc--cceEEEEeCC---CEEEEECCCccc
Confidence 689999999999999999999866422 2222222 2222232332 678999999654
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.44 E-value=1.2e-07 Score=71.33 Aligned_cols=90 Identities=12% Similarity=0.194 Sum_probs=61.4
Q ss_pred cchhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhCCcEE
Q 028813 72 TITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFM 148 (203)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 148 (203)
.+.+..+.++|.+++|+|+.+|.. ...+..++.... ..++|.++|+||+|+.+.... ..+...++....+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 344556889999999999997653 334444443332 236889999999999765320 12334444455688999
Q ss_pred EeecCCCCCHHHHHHH
Q 028813 149 ETSAKDSTNVEQAFMA 164 (203)
Q Consensus 149 ~~Sa~~~~~i~~~~~~ 164 (203)
.+|+.++.|+++++..
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888776554
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.42 E-value=1.8e-07 Score=76.06 Aligned_cols=64 Identities=22% Similarity=0.139 Sum_probs=39.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccc-eeeeEEEEE--Ee-CCeEEEEEEEeCCCccc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTI-GVDFKIRTV--EQ-DGKTIKLQIWDTAGQER 69 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 69 (203)
...++|+|+|.||+|||||+|+|++....-....++ +.+.....+ .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 457899999999999999999999876421111111 111111111 11 11235788999999654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.41 E-value=8.7e-08 Score=75.21 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccc--cccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813 57 IKLQIWDTAGQER--FRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (203)
Q Consensus 57 ~~~~i~D~~g~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~ 128 (203)
+++.++||||... .... ...+ .-..+.+++|+|+......... ...+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 6788999999644 1111 1111 1245899999998865432222 2223222 235678999999753
Q ss_pred ccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813 129 KVVSYETAKAFADEIGIPFMETSAKDSTNV 158 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (203)
............+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233455556667999887775 6554
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=1.6e-06 Score=71.25 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDSYI 34 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~~~ 34 (203)
..++|+|+.|||||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35999999999999999999986433
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=2.6e-06 Score=63.87 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=55.4
Q ss_pred EEEEEEeCCCccc--ccc-chh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813 57 IKLQIWDTAGQER--FRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA 127 (203)
Q Consensus 57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~ 127 (203)
+++.++||||... ... ... .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5789999999766 211 111 12346899999999865322 1122222222 245 678899999743
Q ss_pred CccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
. ......+....++|+..++ .|+++++
T Consensus 254 ~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 3345566777888988776 4666543
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.21 E-value=4.9e-06 Score=63.74 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=55.9
Q ss_pred hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcEEEeecCC
Q 028813 77 YYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKD 154 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
...++|.+++|.+.. |. +...+..++...... ++|.+||+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467899999887654 43 344455555443332 5788999999999754320 01122333345678999999999
Q ss_pred CCCHHHHHHH
Q 028813 155 STNVEQAFMA 164 (203)
Q Consensus 155 ~~~i~~~~~~ 164 (203)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999988765
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.07 E-value=1.2e-05 Score=61.02 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred EEEEEeCCCccccccchhhh------ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813 58 KLQIWDTAGQERFRTITSSY------YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (203)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~ 131 (203)
.+.++|++|..+........ .-..|-.++++|+.... .+......+.... + ...+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCccc---
Confidence 45678999964432211111 12367889999976543 2222333332221 2 23678899996322
Q ss_pred CHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 132 SYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
.-.........+.|+..++ +|+++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2334566677889988876 5666543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=1.3e-05 Score=63.19 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+..-|.|+|++++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35667999999999999999999853
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=1e-06 Score=70.24 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=59.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc--ccccch--------hh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--RFRTIT--------SS 76 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~--------~~ 76 (203)
..+.|+++|.+||||||+.++|...... ...++.............+......+||..|.. +....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998753210 001111000000000001111233578888863 223322 44
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028813 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120 (203)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 120 (203)
++...++.++|+|.++. +.+....|+..+... +.+++++-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 55567788999999887 445556666666544 33444443
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=3.7e-05 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.53 E-value=3.6e-05 Score=54.16 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999876
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.49 E-value=6.8e-05 Score=51.41 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
|..+......|+++|++||||||+.+.|.+
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 555444456799999999999999998864
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00068 Score=53.40 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEEEEEeCCCccccccchh------hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028813 57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK 129 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~ 129 (203)
+++.|+||||......... ..+...+.+++|+|+...... ......+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 6789999999654322111 113467899999998754322 122222222 123 34688999974322
Q ss_pred cCCHHHHHHHHHHhCCcEEEe
Q 028813 130 VVSYETAKAFADEIGIPFMET 150 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~ 150 (203)
.....+....+.|+..+
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 12334555556654433
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=6e-05 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=4.3e-05 Score=57.36 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.35 E-value=0.00011 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.++++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.33 E-value=0.0001 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.31 E-value=0.00011 Score=51.07 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999853
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.28 E-value=0.00013 Score=49.93 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028813 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~ 29 (203)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00013 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998864
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.25 E-value=0.00014 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998743
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.24 E-value=0.00015 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999998643
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.23 E-value=0.0005 Score=51.55 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47899999999999999998 44
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00015 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-..|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 251
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00023 Score=50.26 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=23.6
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
|.........|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344333456799999999999999999864
No 252
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.23 E-value=0.00021 Score=50.03 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
|.........|+|+|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4555566788999999999999999998764
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.21 E-value=0.00019 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+|+|+.|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999876
No 254
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.0002 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999853
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00028 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.19 E-value=0.00018 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
--|+|+|++||||||+++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998653
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00019 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.18 E-value=0.00022 Score=49.56 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.17 E-value=0.00023 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-|+|+|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.17 E-value=0.00026 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999998754
No 261
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=0.00028 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.14 E-value=0.00024 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.14 E-value=0.00023 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.14 E-value=0.00024 Score=54.41 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.13 E-value=0.00028 Score=48.04 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 028813 9 FKLLLIGDSGVGKSCLLLRF 28 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l 28 (203)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.13 E-value=0.00035 Score=48.97 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998764
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.12 E-value=0.0003 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999863
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.11 E-value=0.00023 Score=49.97 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987654
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.10 E-value=0.00028 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~ 29 (203)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999985
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00029 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.08 E-value=0.0003 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.08 E-value=0.0003 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.00037 Score=47.74 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.07 E-value=0.00031 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++|+|+.|||||||++.+.+-.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998854
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.07 E-value=0.00036 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~ 29 (203)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.06 E-value=0.00032 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.06 E-value=0.0004 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.00029 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.|+|+|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.05 E-value=0.00046 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999998754
No 281
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.05 E-value=0.0005 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..++|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.05 E-value=0.00043 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++++|+.|||||||++.+.+-.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998854
No 283
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.03 E-value=0.00042 Score=51.94 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999987554
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00054 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 285
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.02 E-value=0.00052 Score=48.74 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.01 E-value=0.00038 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998754
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.00 E-value=0.00036 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00031 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998763
No 289
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.99 E-value=0.00048 Score=50.45 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 290
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.99 E-value=0.00043 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.99 E-value=0.0005 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 292
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.99 E-value=0.00041 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.00034 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.99 E-value=0.00054 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.99 E-value=0.00047 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 296
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00048 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.99 E-value=0.00037 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.307 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998863
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00052 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00051 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.97 E-value=0.00044 Score=50.39 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.97 E-value=0.00043 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00055 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.96 E-value=0.00049 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999998743
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.96 E-value=0.00051 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988653
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00048 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..-++|+|++|||||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.00051 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.00033 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.95 E-value=0.00048 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.94 E-value=0.0005 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00045 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.94 E-value=0.00034 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998763
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.00073 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.....|+|+|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998764
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.0005 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.94 E-value=0.00049 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00051 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00059 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998753
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.00075 Score=46.70 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
|+.. ....|+|.|.+||||||+.+.|..
T Consensus 1 m~~~--~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKS--KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCC--CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC--cCcEEEEECCCCCCHHHHHHHHHH
Confidence 4554 235799999999999999998853
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00061 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.91 E-value=0.00061 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 320
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.91 E-value=0.0007 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.91 E-value=0.00047 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.|+|+|++||||||+.+.|.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.90 E-value=0.00053 Score=50.48 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00066 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 324
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0007 Score=49.57 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.90 E-value=0.00053 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.89 E-value=0.00031 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 028813 10 KLLLIGDSGVGKSCLLLRFA-DD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~-~~ 31 (203)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998 64
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.89 E-value=0.00047 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..-.-|+|+|++|||||||++.|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44567999999999999999998763
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.89 E-value=0.00067 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998854
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.87 E-value=0.00059 Score=46.88 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~ 29 (203)
....|++.|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34569999999999999999886
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.87 E-value=0.00059 Score=49.32 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028813 10 KLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~ 29 (203)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.00066 Score=45.98 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 332
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.86 E-value=0.00077 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.00053 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 334
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.0007 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.00029 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.84 E-value=0.00065 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~ 29 (203)
...|+|.|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 337
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.83 E-value=0.00064 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998853
No 338
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.81 E-value=0.00048 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999988743
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.001 Score=45.99 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+++|.+||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.78 E-value=0.0009 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+.|+|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.77 E-value=0.00059 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999988743
No 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.00082 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.76 E-value=0.00069 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999865
No 344
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.76 E-value=0.001 Score=49.51 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 345
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.00092 Score=51.25 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
++++|+.|||||||++.+.+-..
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 78999999999999999988543
No 346
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.76 E-value=0.00071 Score=46.28 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.75 E-value=0.00087 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 348
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.74 E-value=0.00069 Score=51.98 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.74 E-value=0.00066 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.73 E-value=0.00055 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988643
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.72 E-value=0.0011 Score=46.38 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.00077 Score=49.80 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.70 E-value=0.0011 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++|+|+.|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 7899999999999999998754
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.70 E-value=0.0011 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 355
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.70 E-value=0.00088 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.69 E-value=0.001 Score=46.08 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 357
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.68 E-value=0.0011 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++++|+.|||||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999998754
No 358
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.68 E-value=0.00091 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++|||||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 359
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.67 E-value=0.0013 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988753
No 360
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.0032 Score=41.57 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999988764
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.67 E-value=0.0011 Score=47.13 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028813 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~ 30 (203)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 66799999999999988764
No 362
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0011 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998863
No 363
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.64 E-value=0.0013 Score=50.83 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 7899999999999999998854
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.0013 Score=50.52 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 7899999999999999998754
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0013 Score=50.53 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~ 32 (203)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7899999999999999998754
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.64 E-value=0.00098 Score=48.48 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999863
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00078 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.62 E-value=0.001 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.++|+|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999886
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.61 E-value=0.0012 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.61 E-value=0.0012 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.61 E-value=0.0012 Score=44.82 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.61 E-value=0.0013 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+|+|++||||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.001 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.++++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999863
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.60 E-value=0.0014 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999876
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.60 E-value=0.0014 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 37899999999999999998754
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.0011 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.60 E-value=0.00046 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.60 E-value=0.0014 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCcHHHHHHHHHHcCCC
Confidence 78999999999999999987543
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.59 E-value=0.0014 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998854
No 380
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0012 Score=48.11 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999999853
No 381
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.58 E-value=0.0014 Score=47.82 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028813 9 FKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~ 29 (203)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 382
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.57 E-value=0.0012 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++|+|++||||||+++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998744
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.56 E-value=0.0013 Score=45.25 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998854
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0012 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
--++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 385
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0014 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998863
No 386
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.53 E-value=0.0011 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.52 E-value=0.0017 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.52 E-value=0.0011 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-.-|+|.|+.||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467999999999999999998774
No 389
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 3789999999999999999873
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.51 E-value=0.0012 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 37899999999999999998754
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0018 Score=43.93 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998853
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0016 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 393
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.49 E-value=0.0018 Score=46.50 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=20.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...-...++++|+|+|||||||+.+.|..
T Consensus 2 ~~~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 2 AHHHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -------CEEEEECCTTSCHHHHHHHHHH
T ss_pred CcccccccceeeECCCCCCHHHHHHHHHH
Confidence 33445678999999999999999998753
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.47 E-value=0.0014 Score=48.32 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 395
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.46 E-value=0.0014 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998763
No 396
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.44 E-value=0.0074 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~ 29 (203)
....-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 356678899999999999999665
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.44 E-value=0.0018 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999853
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.43 E-value=0.0019 Score=47.86 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~ 29 (203)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.40 E-value=0.0026 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+.|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999998864
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.40 E-value=0.0019 Score=45.99 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++|+|++|+|||||++.+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999885
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.36 E-value=0.0011 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998854
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.002 Score=46.94 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 403
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.32 E-value=0.0021 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.--++|+|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999999653
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0019 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
--++++|+.||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999864
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0018 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|+|+.|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998864
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.31 E-value=0.0019 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.30 E-value=0.0023 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...|+++|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 408
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0011 Score=47.24 Aligned_cols=25 Identities=16% Similarity=-0.051 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.+-|++.|+++.|||+|++++.+..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 3445555999999999999999863
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.27 E-value=0.0038 Score=44.77 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-.-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.27 E-value=0.0021 Score=51.28 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=48.4
Q ss_pred EEEEEEeCCCccccccch----hh---hc-----cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813 57 IKLQIWDTAGQERFRTIT----SS---YY-----RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 124 (203)
+++.++||+|........ .. .. ...+-++|++|+...... ......+.... +.. .+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~it-gvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--GLT-GITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--CCS-EEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--CCC-EEEEEcCC
Confidence 457889999964321111 11 11 124578889997755321 12222232221 223 56789999
Q ss_pred CCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (203)
.... .-.+..+...+++++.++ -+|.++++
T Consensus 450 ~tak----gG~~lsi~~~~~~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 450 GTAK----GGVIFSVADQFGIPIRYI--GVGERIED 479 (503)
T ss_dssp GCSC----CTHHHHHHHHHCCCEEEE--ECSSSGGG
T ss_pred Cccc----ccHHHHHHHHHCCCEEEE--ecCCChhh
Confidence 5321 233556666778888765 33555443
No 411
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.26 E-value=0.0059 Score=42.58 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=54.8
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~ 134 (203)
+++.++|+|+.. .......+..+|.+++++..+... ..+...+..+.... ..+.++.+|+|+.|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 678999999865 233455667799999999876543 56666666665443 234677899999985321 1 23
Q ss_pred HHHHHHHHhCCcEE
Q 028813 135 TAKAFADEIGIPFM 148 (203)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (203)
...++...++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34555555665554
No 412
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.25 E-value=0.0021 Score=43.93 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++|.|++|+|||++++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999998865
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.24 E-value=0.0024 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.23 E-value=0.0025 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
+++|+|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.22 E-value=0.0026 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.21 E-value=0.003 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0025 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0027 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.19 E-value=0.0032 Score=41.95 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028813 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~ 29 (203)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999975
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.0034 Score=43.84 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.14 E-value=0.0027 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0045 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 423
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.10 E-value=0.004 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999988754
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.09 E-value=0.0037 Score=41.34 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.05 E-value=0.0045 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 426
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.04 E-value=0.042 Score=38.61 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCc-cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813 56 TIKLQIWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 134 (203)
Q Consensus 56 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 134 (203)
.+++.++|+|+. ... .....+..+|.+|+++..+ ..++..+...+..+.... +.++.+|+|+.|..... . ..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HH
Confidence 367899999986 432 2445677899999999865 455666666666665533 45688999999864311 1 23
Q ss_pred HHHHHHHHhCCcEE
Q 028813 135 TAKAFADEIGIPFM 148 (203)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (203)
+..+...+++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44444455665544
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0046 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
-++++|+.|||||||++.+.+-..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.04 E-value=0.0031 Score=44.33 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888765
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.03 E-value=0.0032 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 430
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0049 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++++|+.|+|||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999987543
No 431
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.96 E-value=0.0033 Score=46.01 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999988653
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.95 E-value=0.004 Score=49.15 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
+++|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 433
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.95 E-value=0.0043 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.+++.|++|+|||++++++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.94 E-value=0.004 Score=46.25 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34789999999999999999876
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0049 Score=43.07 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.93 E-value=0.0041 Score=45.86 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-.+++.|++|+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999753
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.92 E-value=0.0045 Score=44.00 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 438
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.91 E-value=0.0042 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999998754
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.91 E-value=0.0062 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47999999999999999998754
No 440
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.0047 Score=43.31 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998875
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.90 E-value=0.004 Score=45.97 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 442
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.90 E-value=0.0046 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999988744
No 443
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.89 E-value=0.0039 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999888743
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.89 E-value=0.0045 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..-|+++|.+||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.88 E-value=0.0062 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..-|+|+|++|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34588999999999999999864
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0061 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++|+|+.|||||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999988543
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.87 E-value=0.0045 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.+++.|++|+|||+|++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998863
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0053 Score=44.09 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.85 E-value=0.0056 Score=42.84 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998643
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.83 E-value=0.0065 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.83 E-value=0.006 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..-+++.|+||+|||+|.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678889999999999999875
No 452
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.80 E-value=0.0053 Score=47.27 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028813 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~ 29 (203)
.+|+|+.|||||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999976
No 453
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.80 E-value=0.0065 Score=41.81 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.80 E-value=0.0068 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++|+|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998543
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0027 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998754
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.77 E-value=0.0078 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~~ 33 (203)
.++|+|+.|||||||++.+.+-..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998543
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.76 E-value=0.0088 Score=43.84 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.....+++.|++|+|||++++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999998763
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.75 E-value=0.0086 Score=44.66 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999988753
No 459
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.75 E-value=0.0049 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++|.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999875
No 460
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.75 E-value=0.081 Score=37.79 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 136 (203)
+++.++|+|+... ......+..+|.+|+++..+ ..++..+...+..+.........+.+|+|+.+.... ...+
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD-- 191 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence 5789999998543 23455677899999999865 566777777777776554434568889999985332 2333
Q ss_pred HHHHHHhCCcEEEe
Q 028813 137 KAFADEIGIPFMET 150 (203)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (203)
.+...++.+++..
T Consensus 192 -~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 -EIEKVIGRPISKR 204 (245)
T ss_dssp -HHHHHHTSCEEEE
T ss_pred -HHHHHhCCCeEEE
Confidence 3444567777655
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.73 E-value=0.0052 Score=45.90 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccccccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813 57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~ 130 (203)
.++.++||+|....... ....+. ..+.+++|+|++.. ...+.++...+. .-+ ..-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 57899999996643221 112222 35678889987643 223333322222 111 23456799997532
Q ss_pred CCHHHHHHHHHHhCCcEEEee
Q 028813 131 VSYETAKAFADEIGIPFMETS 151 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~S 151 (203)
...........++|+..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 1345566667788776554
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.71 E-value=0.0054 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADDS 32 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~~ 32 (203)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999887743
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.71 E-value=0.0078 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
....++|.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987653
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.66 E-value=0.0079 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998764
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.66 E-value=0.0067 Score=43.54 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-++|.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 466
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0047 Score=47.05 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028813 11 LLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~ 30 (203)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0085 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q 028813 11 LLLIGDSGVGKSCLLLRFADDSYI 34 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~~~~ 34 (203)
++|+|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999885543
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.64 E-value=0.0062 Score=45.71 Aligned_cols=86 Identities=26% Similarity=0.231 Sum_probs=47.4
Q ss_pred EEEEEEeCCCccccccch-------hhh-----ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813 57 IKLQIWDTAGQERFRTIT-------SSY-----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (203)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 124 (203)
.++.++|+||........ ... -...+.+++|+|+.... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 468899999953221111 111 12468889999987432 12221 12222211 2 2356679999
Q ss_pred CCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813 125 LTANKVVSYETAKAFADEIGIPFMETSA 152 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
.... .-.+..+....++|+.++..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 6322 22356677788988887754
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.62 E-value=0.0059 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-+.|+|++|+|||||+..+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 470
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.61 E-value=0.0068 Score=45.09 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 471
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.59 E-value=0.0082 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028813 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 6 ~~~~~i~v~G~~~sGKSsli~~l~ 29 (203)
.+.+|++++|...|||||+++.+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 578999999999999999999864
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.0061 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998764
No 473
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.0064 Score=46.59 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
-.++|.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0065 Score=47.72 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
-|++.|+||+|||+|++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999976
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.55 E-value=0.0065 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998754
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0093 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028813 9 FKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~ 30 (203)
..|+|.|.+||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998874
No 477
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.52 E-value=0.0073 Score=45.62 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-.+++.|++|+|||+|++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999863
No 478
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.007 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.--|++.||||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999863
No 479
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.47 E-value=0.0073 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.47 E-value=0.0092 Score=45.57 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999987653
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.43 E-value=0.0097 Score=41.78 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028813 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~ 29 (203)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999874
No 482
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0078 Score=47.38 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999863
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.42 E-value=0.0083 Score=45.24 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-.+++.|+||+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999753
No 484
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.35 E-value=0.011 Score=44.90 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.31 E-value=0.012 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
.-|+|+|++|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998743
No 486
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.0089 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
--|++.|+||+|||.|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45899999999999999999763
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.29 E-value=0.0043 Score=45.38 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.+++.|++|+|||+|++++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.28 E-value=0.0097 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.++|.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.26 E-value=0.011 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+-.-|+|.|.+||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999998853
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.25 E-value=0.011 Score=42.34 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=17.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 7 ~~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
+-.-|+|.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998864
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.22 E-value=0.01 Score=47.96 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028813 11 LLLIGDSGVGKSCLLLRFA 29 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~ 29 (203)
++|+|++|||||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.011 Score=44.86 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028813 11 LLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 11 i~v~G~~~sGKSsli~~l~~~ 31 (203)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.22 E-value=0.012 Score=40.26 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
=+++.|++|+||||+.-.|..+
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999864
No 494
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.009 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
+|+|+|++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999998863
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.21 E-value=0.0094 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028813 10 KLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-++++|++|+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998863
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.17 E-value=0.0096 Score=48.33 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028813 10 KLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 10 ~i~v~G~~~sGKSsli~~l~~ 30 (203)
.++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.17 E-value=0.013 Score=43.94 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.01 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~ 30 (203)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.16 E-value=0.012 Score=42.90 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028813 9 FKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 9 ~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
..++|.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999998754
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.15 E-value=0.0085 Score=48.68 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (203)
Q Consensus 8 ~~~i~v~G~~~sGKSsli~~l~~~ 31 (203)
-..|+|+|++|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357999999999999999998764
Done!