Query 028814
Match_columns 203
No_of_seqs 137 out of 608
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 1.3E-30 2.9E-35 213.1 4.1 123 44-178 39-163 (168)
2 TIGR00983 3a0801s02tim23 mitoc 99.9 9.4E-25 2E-29 178.1 9.8 136 25-174 7-148 (149)
3 TIGR00980 3a0801so1tim17 mitoc 99.9 1E-23 2.2E-28 175.3 10.4 115 51-183 18-132 (170)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.8E-22 4E-27 157.5 12.0 124 45-182 4-128 (128)
5 PTZ00236 mitochondrial import 99.9 3.1E-21 6.6E-26 159.6 12.6 112 51-180 20-131 (164)
6 KOG1652 Mitochondrial import i 99.8 9.7E-21 2.1E-25 157.8 -0.4 119 42-182 12-131 (183)
7 COG5596 TIM22 Mitochondrial im 99.7 2.9E-19 6.2E-24 149.7 -0.5 155 17-181 17-189 (191)
8 KOG3324 Mitochondrial import i 99.7 1.8E-17 4E-22 140.0 5.3 150 13-176 33-193 (206)
9 KOG4608 Uncharacterized conser 97.0 7.9E-05 1.7E-09 65.6 -2.4 54 98-151 127-180 (270)
10 COG5596 TIM22 Mitochondrial im 96.9 0.00012 2.6E-09 62.1 -2.0 75 102-178 78-162 (191)
11 TIGR00980 3a0801so1tim17 mitoc 93.0 1.2 2.6E-05 37.5 9.7 123 43-183 13-136 (170)
12 PF02466 Tim17: Tim17/Tim22/Ti 92.4 1.2 2.7E-05 34.2 8.6 27 46-72 1-28 (128)
13 PF10247 Romo1: Reactive mitoc 81.1 1.5 3.3E-05 31.6 2.5 27 46-72 2-29 (67)
14 KOG4096 Uncharacterized conser 79.3 1.5 3.2E-05 32.2 2.0 67 44-122 4-72 (75)
15 KOG1398 Uncharacterized conser 78.7 3.1 6.8E-05 39.5 4.5 46 103-148 300-345 (460)
16 PF05818 TraT: Enterobacterial 61.4 14 0.00031 32.2 4.5 41 135-180 89-130 (215)
17 PF05957 DUF883: Bacterial pro 58.5 29 0.00062 25.6 5.2 12 56-67 79-90 (94)
18 PF05957 DUF883: Bacterial pro 56.5 28 0.0006 25.7 4.8 17 49-65 76-92 (94)
19 PRK01026 tetrahydromethanopter 55.8 34 0.00073 25.4 5.0 25 11-35 9-33 (77)
20 COG4575 ElaB Uncharacterized c 49.9 63 0.0014 25.3 5.9 30 6-35 25-55 (104)
21 PRK10404 hypothetical protein; 49.6 22 0.00047 27.4 3.3 13 55-67 85-97 (101)
22 PF13436 Gly-zipper_OmpA: Glyc 48.2 20 0.00043 28.1 3.0 45 130-178 50-94 (118)
23 PF10439 Bacteriocin_IIc: Bact 47.4 52 0.0011 23.0 4.7 22 130-151 23-44 (65)
24 COG4803 Predicted membrane pro 43.5 25 0.00054 29.5 2.9 52 17-68 15-76 (170)
25 PTZ00236 mitochondrial import 43.1 1.3E+02 0.0028 25.2 7.2 123 43-183 15-138 (164)
26 PRK10132 hypothetical protein; 37.1 63 0.0014 25.1 4.2 17 52-68 88-104 (108)
27 PF13436 Gly-zipper_OmpA: Glyc 35.3 1.4E+02 0.0031 23.2 6.0 23 48-70 50-72 (118)
28 PRK13731 conjugal transfer sur 34.4 67 0.0015 28.6 4.4 18 132-149 112-129 (243)
29 PF04418 DUF543: Domain of unk 33.4 1.1E+02 0.0024 22.4 4.7 24 45-68 23-47 (75)
30 PF03672 UPF0154: Uncharacteri 33.0 34 0.00075 24.5 1.9 44 51-102 4-48 (64)
31 PF12597 DUF3767: Protein of u 32.9 81 0.0018 24.8 4.3 52 124-175 32-83 (118)
32 PRK10404 hypothetical protein; 31.1 96 0.0021 23.8 4.3 17 49-65 83-99 (101)
33 TIGR00983 3a0801s02tim23 mitoc 29.5 3.1E+02 0.0068 22.4 7.5 100 44-151 36-135 (149)
34 PF13373 DUF2407_C: DUF2407 C- 29.1 88 0.0019 25.4 4.0 46 21-69 42-107 (140)
35 PF13807 GNVR: G-rich domain o 27.9 2.3E+02 0.0049 20.2 5.6 33 36-68 48-80 (82)
36 KOG0682 Ammonia permease [Inor 27.9 3.1E+02 0.0067 27.0 8.0 65 117-183 272-336 (500)
37 PF04210 MtrG: Tetrahydrometha 27.2 2.5E+02 0.0055 20.5 5.6 22 14-35 9-30 (70)
38 PRK10132 hypothetical protein; 25.9 2.3E+02 0.005 22.0 5.7 17 49-65 89-105 (108)
39 TIGR01149 mtrG N5-methyltetrah 25.8 2.7E+02 0.0058 20.3 6.1 54 11-65 6-60 (70)
40 PF12732 YtxH: YtxH-like prote 25.1 79 0.0017 22.3 2.7 20 51-70 2-21 (74)
41 COG4064 MtrG Tetrahydromethano 24.5 1.7E+02 0.0038 21.5 4.3 56 13-69 11-67 (75)
42 PRK02898 cobalt transport prot 24.3 37 0.00079 26.4 0.9 48 23-70 41-92 (100)
43 TIGR03510 XapX XapX domain. Th 22.8 98 0.0021 21.0 2.6 24 56-79 4-27 (49)
44 PRK11280 hypothetical protein; 21.7 2.5E+02 0.0055 23.7 5.5 44 132-177 65-108 (170)
45 PRK01844 hypothetical protein; 21.0 84 0.0018 23.0 2.2 16 84-102 39-55 (72)
46 PF07281 INSIG: Insulin-induce 21.0 5.2E+02 0.011 22.0 8.6 49 103-151 48-101 (193)
47 TIGR01992 PTS-IIBC-Tre PTS sys 20.9 3E+02 0.0064 26.4 6.5 65 104-175 345-416 (462)
48 PRK00523 hypothetical protein; 20.8 89 0.0019 22.9 2.2 16 84-102 40-56 (72)
49 TIGR03789 pdsO proteobacterial 20.5 1.2E+02 0.0026 26.8 3.4 31 138-173 45-75 (239)
50 PF05433 Rick_17kDa_Anti: Glyc 20.1 2.6E+02 0.0056 18.1 4.5 32 138-170 5-36 (42)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-30 Score=213.05 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=109.1
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCC-CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP-QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (203)
Q Consensus 44 ~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec 121 (203)
.++|. |+++++|+|+++|+.||+|.++++.+-+.|.+ ..++++|+ +|+ |+.+++++++|||++|++|+++||
T Consensus 39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~Ec 112 (168)
T KOG3225|consen 39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVEC 112 (168)
T ss_pred hcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHHH
Confidence 34888 99999999999999999999999976222322 23456665 677 899999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 028814 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178 (203)
Q Consensus 122 ~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~ 178 (203)
++|++|.|+||+|++++||+||+.++.|+| |++++.||++|++||++|++.
T Consensus 113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~raG------p~a~~~G~agfa~fS~~id~y 163 (168)
T KOG3225|consen 113 LIESFRAKSDWYNGAIAGCVTGGSLGYRAG------PKAAAIGCAGFAAFSAAIDKY 163 (168)
T ss_pred HHHHHHhhhchhcceeeeeeeccchhhccc------chhhhhchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999999999999999654
No 2
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.91 E-value=9.4e-25 Score=178.09 Aligned_cols=136 Identities=21% Similarity=0.146 Sum_probs=113.7
Q ss_pred HHHHhHHHHHHHHh-----cCCchhhh-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhh
Q 028814 25 KLKELENGYKSWLA-----KQPLPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAV 98 (203)
Q Consensus 25 ~~~~l~~~~~~~~~-----~q~~~~e~-cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 98 (203)
+.|+|.++.++++- ++..+.|+ |.++..++++|.++|.++|++.+..+.+ + -.+.++++...+++ +
T Consensus 7 ~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln~---~ 78 (149)
T TIGR00983 7 DPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILNM---V 78 (149)
T ss_pred CcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHHH---H
Confidence 45677666666522 33444554 4599999999999999999999887532 1 12357888999987 7
Q ss_pred cCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHH
Q 028814 99 AGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (203)
Q Consensus 99 ~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga 174 (203)
+.+..+++++||+++++|+++||.++++|+|||+||+++||++||+++++++| |++++.+|++.+++.++
T Consensus 79 ~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G------~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 79 TRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRG------LRGMARSGALGATAAGV 148 (149)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccC------hHHHHHHhHHHHHHhhc
Confidence 78889999999999999999999999999999999999999999999999999 99999999998887664
No 3
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.90 E-value=1e-23 Score=175.29 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhccc
Q 028814 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKE 130 (203)
Q Consensus 51 ~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~ 130 (203)
..++.+|.+.|.+++++.+..+. |. .++++..++. ++.+.++++++||++|++|+++||+++++|+||
T Consensus 18 G~af~~G~~~G~~~g~~~G~rns----p~-----g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~Ke 85 (170)
T TIGR00980 18 GGAFAMGTIGGSIFQAFKGFRNS----PK-----GEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKE 85 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcC----Cc-----cchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455555555666655543322 11 2356677765 667889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814 131 DLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF 183 (203)
Q Consensus 131 D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~ 183 (203)
|+||+++|||+||++|++++| +++++.+|+++++|.++|+.+|..+.
T Consensus 86 D~~NsiiAG~~TGa~l~~r~G------~~a~~~~aa~gg~~la~ie~~g~~~~ 132 (170)
T TIGR00980 86 DPWNSIISGFLTGAALAVRGG------PRAMRGSAILGACILAVIEGVGLVLT 132 (170)
T ss_pred chHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999987774
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.89 E-value=1.8e-22 Score=157.53 Aligned_cols=124 Identities=27% Similarity=0.406 Sum_probs=103.0
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHH
Q 028814 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (203)
Q Consensus 45 e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~i 123 (203)
|.++ .++.+++.|.++|.+.+....... ++...+.++++...++. ++.+...++.+||.++++|+++||.+
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l 75 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAISAFTR-----PPRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECAL 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444 777777777777777777754211 11113356688888887 77777889999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 028814 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADH 182 (203)
Q Consensus 124 e~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~ 182 (203)
+++|+|||+||+++||++||++++.+.| ++.++.+++++++++.++++.++++
T Consensus 76 ~~~R~k~D~~N~~~aG~~aGa~~~~~~g------~~~~~~~~~~~a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 76 ERLRGKDDPWNSAIAGAAAGAVLGLRSG------PRGMASGAALGAAFAAAVEYYGRMP 128 (128)
T ss_pred HHhhcccccchhHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999 9999999999999999999998764
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.86 E-value=3.1e-21 Score=159.61 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhccc
Q 028814 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKE 130 (203)
Q Consensus 51 ~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~ 130 (203)
..++.+|.+.|.+++++.+..+. |+ .+++...++. ++.+.++++++||++|++|+++||+++++|+||
T Consensus 20 G~af~~G~vgG~~~~~~~G~rns----p~-----g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~ 87 (164)
T PTZ00236 20 GGAFSMGCIGGFIWHFLKGMRNS----PK-----GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKE 87 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC----CC-----cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455555555555555544322 11 3345566665 666888999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhc
Q 028814 131 DLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSA 180 (203)
Q Consensus 131 D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~ 180 (203)
|+||+++|||+||++|+++.| +++++.+++..+++.++|+.++.
T Consensus 88 D~~Nsi~AG~~TGa~l~~r~G------~~~~~~~a~~Gg~~~~~ie~~~i 131 (164)
T PTZ00236 88 DHWNAIASGFFTGGVLAIRGG------WRSAVRNAIFGGILLGIIELVSI 131 (164)
T ss_pred chHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88666655555555555554443
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9.7e-21 Score=157.78 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=98.9
Q ss_pred chhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHH
Q 028814 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (203)
Q Consensus 42 ~~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~e 120 (203)
..+++|- +.+++.+.|.++.++.|...+.... +....++. ...+....|++||+||++||.+|
T Consensus 12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~-------------r~~gg~~a---v~~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-------------RLVGGISA---VKMRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred eeeccccchhhhcccccceeeeeeeeecCCccc-------------ccccchhh---hhccCcccccceeeeechhhHHH
Confidence 4578887 8888888888888888877654321 11222221 22355679999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 028814 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADH 182 (203)
Q Consensus 121 c~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~ 182 (203)
|++..+|+|||+||++++|++||++|+.+.| +++++.+++.|+++.+.++-++..+
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g------~~a~~~sa~~~g~~lamieg~g~~~ 131 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGG------PKAMLTSAITGGLLLAMIEGLGIQV 131 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeecccc------HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999988766
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.9e-19 Score=149.72 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=125.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhcCCchhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCC---------------
Q 028814 17 KAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP--------------- 80 (203)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~q~~~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~--------------- 80 (203)
++-+.+... +.=+.+.+..........++|+ +++++.+.|+.+|...+.++.++.+..+..++
T Consensus 17 ~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~ 95 (191)
T COG5596 17 NAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFST 95 (191)
T ss_pred CcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeec
Confidence 344444443 3334455556666666778888 99999999999999999998887752222111
Q ss_pred --CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCch
Q 028814 81 --QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPA 158 (203)
Q Consensus 81 --~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~ 158 (203)
..+.++|++.++++ +..+.+..++|||++|..|++.||+|+.+|+|||+.|++.+|+.||+.+..+.| +
T Consensus 96 i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g------~ 166 (191)
T COG5596 96 IDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG------P 166 (191)
T ss_pred cccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc------c
Confidence 12458899999998 788999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 028814 159 VNAFTSGLLFAIFQGCSFKVSAD 181 (203)
Q Consensus 159 ~aa~~gga~fA~fsga~~~~g~~ 181 (203)
+++..++++|++|++.+....++
T Consensus 167 qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 167 QAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred cccccCccchhhhhhhHHhhhhc
Confidence 99999999999999999876654
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.8e-17 Score=139.95 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=116.4
Q ss_pred CCchhhhHHHHHHH--HHh---HHHHHHHHh-----cCCchhhh-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 028814 13 QLPQKAIKDVQFKL--KEL---ENGYKSWLA-----KQPLPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQ 81 (203)
Q Consensus 13 ~~~~~~~~~~~~~~--~~l---~~~~~~~~~-----~q~~~~e~-cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~ 81 (203)
.-|-||++++++.+ ++| ++|.+-.+. +..-+.|+ |+.|..+|+.|+++|.+.|++....+.+ + .
T Consensus 33 ~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e----~-~ 107 (206)
T KOG3324|consen 33 PRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTE----N-G 107 (206)
T ss_pred ccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCC----C-C
Confidence 34558899998877 543 333322222 12223344 5599999999999999999999876542 1 1
Q ss_pred CCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHH
Q 028814 82 SSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNA 161 (203)
Q Consensus 82 ~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa 161 (203)
.+.++++.++++. ..++...++++.++++.+|+.+|..|+..|+|||++|+++||++||+++....| ++++
T Consensus 108 ~~~Klr~nrILN~---~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~G------lr~~ 178 (206)
T KOG3324|consen 108 ASGKLRLNRILNS---VTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRG------LRAA 178 (206)
T ss_pred CccchhHHHHhhh---ccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCC------chHH
Confidence 3357788888776 344555799999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 028814 162 FTSGLLFAIFQGCSF 176 (203)
Q Consensus 162 ~~gga~fA~fsga~~ 176 (203)
..+++..+...++..
T Consensus 179 av~ga~g~~aa~aw~ 193 (206)
T KOG3324|consen 179 AVAGAVGGTAAAAWT 193 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888877776663
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=7.9e-05 Score=65.57 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=48.4
Q ss_pred hcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcC
Q 028814 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151 (203)
Q Consensus 98 ~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G 151 (203)
+.++.+.+|-..|++.+.|-++...+..+|+|+|.||=+++|.+||+++.+.-|
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g 180 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG 180 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence 345667778888999999999999999999999999999999999999988766
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00012 Score=62.06 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=57.7
Q ss_pred cHHHHHHHH-HHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHH---------HHHHHHHH
Q 028814 102 PLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAIF 171 (203)
Q Consensus 102 ~~~~a~~fa-~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~---------gga~fA~f 171 (203)
....+.||| ++|++++.+.|+.+++|.|.|.||....|+.||..++..... .+...+.|. +++.+++|
T Consensus 78 ~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~~ 155 (191)
T COG5596 78 VHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGAF 155 (191)
T ss_pred ccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhhh
Confidence 345788899 999999999999999999999999999999999999987652 111333333 55666666
Q ss_pred HHHHHHh
Q 028814 172 QGCSFKV 178 (203)
Q Consensus 172 sga~~~~ 178 (203)
.|+..+.
T Consensus 156 TGa~~~~ 162 (191)
T COG5596 156 TGAALAS 162 (191)
T ss_pred hhHHHHh
Confidence 6665543
No 11
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=92.95 E-value=1.2 Score=37.45 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=91.3
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814 43 PVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (203)
Q Consensus 43 ~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec 121 (203)
+.++|. ...++.+.|++.|++-|+........+ +-.+..+.+++.+++ ...+.--++..++...++.
T Consensus 13 ~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl---------~g~l~av~~rap~~g---~~Fav~g~lys~~ec~i~~ 80 (170)
T TIGR00980 13 ILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL---------VGAMRAIKTRAPVLG---GNFAVWGGLFSTIDCAVVA 80 (170)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh---------hHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 457777 778888888888888888776454321 222233444433333 3677777888899999998
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF 183 (203)
Q Consensus 122 ~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~ 183 (203)
.-++-=-.+-+.-..+.|.+-++-=+.+.- ..+++.+++++++|.++-..+.+...
T Consensus 81 ~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 81 IRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 877766688899999999998887777776 88999999999999998777766543
No 12
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=92.39 E-value=1.2 Score=34.24 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.2
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 028814 46 AAI-VTATTAINGAAIGAFLGVMTQDLT 72 (203)
Q Consensus 46 ~cv-~t~~g~v~G~~lG~~~G~~~~~~~ 72 (203)
+|. ++..+.+.|+++|.++|.+....+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 889999999999999999998864
No 13
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=81.10 E-value=1.5 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=19.0
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 028814 46 AAI-VTATTAINGAAIGAFLGVMTQDLT 72 (203)
Q Consensus 46 ~cv-~t~~g~v~G~~lG~~~G~~~~~~~ 72 (203)
+|+ |--++..+|+.+|..+|++....+
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~ 29 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFS 29 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHH
Confidence 576 666777777777777777776554
No 14
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.34 E-value=1.5 Score=32.25 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=39.0
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCC-CCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPT-PPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (203)
Q Consensus 44 ~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec 121 (203)
..+|+ |--++.++|+.+|...|.+...... ++. ++ -+. +++. ++.-+...+..|+.+=++=+++.|
T Consensus 4 qpSc~dKikmG~~mG~avG~a~G~lfGgf~~-lR~g~~----g~~-~vr~------iGkt~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 4 QPSCFDKIKMGLMMGGAVGGATGALFGGFAA-LRYGPR----GRG-LVRT------IGKTMLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred CccHHHHHHHHHHHHhhhhhhhhhhccchhh-eeecCC----hhH-HHHH------HhHHHHhccchhhhhhhhhhheec
Confidence 35788 7777777777777777776655543 111 11 022 2222 333445677788887777777766
Q ss_pred H
Q 028814 122 V 122 (203)
Q Consensus 122 ~ 122 (203)
.
T Consensus 72 ~ 72 (75)
T KOG4096|consen 72 G 72 (75)
T ss_pred C
Confidence 4
No 15
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.68 E-value=3.1 Score=39.53 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhh
Q 028814 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148 (203)
Q Consensus 103 ~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~ 148 (203)
...+.-.|.+-.+|..+.|...++|-+||..|+++||++++..+-.
T Consensus 300 lqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 300 LQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 3455667888999999999999999999999999999998865544
No 16
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=61.40 E-value=14 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCchHHHHHH-HHHHHHHHHHHHHhhc
Q 028814 135 SVVAAFGSGAAFSLVSGMGGANPAVNAFTS-GLLFAIFQGCSFKVSA 180 (203)
Q Consensus 135 s~~aG~~tGavl~~~~G~~~~~~~~aa~~g-ga~fA~fsga~~~~g~ 180 (203)
++++|.++|+.++...+ ....++.| |+..|+...+.+.+-+
T Consensus 89 ga~~Ga~~G~~~g~~~~-----~~~g~~~G~GlaGalig~~ada~v~ 130 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNS-----GSAGAAIGAGLAGALIGMIADAMVE 130 (215)
T ss_pred hHHHHhHHhhhhccccC-----CccchhhhhhHHHhHHHHHHhhhcc
Confidence 34445555555443322 13344444 6666777776666554
No 17
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.52 E-value=29 Score=25.59 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhh
Q 028814 56 NGAAIGAFLGVM 67 (203)
Q Consensus 56 ~G~~lG~~~G~~ 67 (203)
...++|+++|.+
T Consensus 79 iAagvG~llG~L 90 (94)
T PF05957_consen 79 IAAGVGFLLGLL 90 (94)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 18
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=56.49 E-value=28 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028814 49 VTATTAINGAAIGAFLG 65 (203)
Q Consensus 49 ~t~~g~v~G~~lG~~~G 65 (203)
..+++.+.|+++|.+++
T Consensus 76 svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 76 SVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46677778888888875
No 19
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=55.85 E-value=34 Score=25.41 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.1
Q ss_pred ccCCchhhhHHHHHHHHHhHHHHHH
Q 028814 11 LVQLPQKAIKDVQFKLKELENGYKS 35 (203)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~ 35 (203)
..-.|+..++++++||+++|...+-
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeKVEf 33 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEKVEF 33 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999987764
No 20
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=49.86 E-value=63 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=18.5
Q ss_pred hhhh-cccCCchhhhHHHHHHHHHhHHHHHH
Q 028814 6 EKVM-SLVQLPQKAIKDVQFKLKELENGYKS 35 (203)
Q Consensus 6 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 35 (203)
|+|+ |+-.++....++++.+.+.+..+.+.
T Consensus 25 EevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~ 55 (104)
T COG4575 25 EEVLKSSGSLAGDEAEELRSKAESALKEARD 55 (104)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 3444 56666777777777777665555544
No 21
>PRK10404 hypothetical protein; Provisional
Probab=49.60 E-value=22 Score=27.36 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q 028814 55 INGAAIGAFLGVM 67 (203)
Q Consensus 55 v~G~~lG~~~G~~ 67 (203)
..+.++|+++|++
T Consensus 85 GiaagvGlllG~L 97 (101)
T PRK10404 85 GVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHHH
Confidence 3444566666655
No 22
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=48.18 E-value=20 Score=28.09 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 028814 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178 (203)
Q Consensus 130 ~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~ 178 (203)
++.....+.|.+.|++++.-.|.. ...++.|+++.++.-++.-..
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~----~~ga~~GAa~Ga~~G~~~g~~ 94 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGN----GRGAAIGAAAGAAVGAAAGAA 94 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHHHHHHHHHHhhhh
Confidence 344445566777788888877732 234555544444444443333
No 23
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=47.41 E-value=52 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=17.3
Q ss_pred cchhHHHHHHHHHHHHhhhhcC
Q 028814 130 EDLQSSVVAAFGSGAAFSLVSG 151 (203)
Q Consensus 130 ~D~~Ns~~aG~~tGavl~~~~G 151 (203)
.+.+..+++++++|++.+...|
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g 44 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGG 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 3456677888888988888888
No 24
>COG4803 Predicted membrane protein [Function unknown]
Probab=43.52 E-value=25 Score=29.52 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHhHHHHHH---------HHhcCCchhhhHH-HHHHHHHHHHHHHHHHHhhh
Q 028814 17 KAIKDVQFKLKELENGYKS---------WLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~---------~~~~q~~~~e~cv-~t~~g~v~G~~lG~~~G~~~ 68 (203)
.--+++++++.+|+.+..- |-..-..+.+-.+ -|+.|++.|+..|.++|+++
T Consensus 15 ~~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 15 DKAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred chHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 3446677777776665432 2122223345555 78888999999999999887
No 25
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=43.09 E-value=1.3e+02 Score=25.23 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhh-hhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814 43 PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQ-QVQAVAGGPLVQARNFAVITGVNAGISC 121 (203)
Q Consensus 43 ~~e~cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~a~~fa~~g~~ysg~ec 121 (203)
+.++|-.+...+..|+.++.++..+.++.... . .....+.++ ++.+++ ...+.--+++.++...++.
T Consensus 15 i~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~----r-----l~g~l~~~~~rap~~g---~~FAv~G~~ys~~ec~~~~ 82 (164)
T PTZ00236 15 IIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGE----R-----FSGGFYLLRKRAPILG---GNFAIWGGLFSTFDCTLQY 82 (164)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhCCCcc----h-----HHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 45677644444444445555555555554542 1 112333333 332233 3566667788888888888
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF 183 (203)
Q Consensus 122 ~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~ 183 (203)
.-.+-=-.+-+.-..+.|.+-+.--+.++= ..+++.+|++++++.++-..+.+.+.
T Consensus 83 ~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~------~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 83 LRGKEDHWNAIASGFFTGGVLAIRGGWRSA------VRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred HHccCchHHHHHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 877777789899999999998888888877 88999999998887776655555443
No 26
>PRK10132 hypothetical protein; Provisional
Probab=37.08 E-value=63 Score=25.12 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 028814 52 TTAINGAAIGAFLGVMT 68 (203)
Q Consensus 52 ~g~v~G~~lG~~~G~~~ 68 (203)
.+...+.++|+++|++.
T Consensus 88 ~svgiaagvG~llG~Ll 104 (108)
T PRK10132 88 CSVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555666666553
No 27
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=35.28 E-value=1.4e+02 Score=23.24 Aligned_cols=23 Identities=39% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 028814 48 IVTATTAINGAAIGAFLGVMTQD 70 (203)
Q Consensus 48 v~t~~g~v~G~~lG~~~G~~~~~ 70 (203)
-.++.+.+.|.++|.++|.+...
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC
Confidence 36677777777777777776655
No 28
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=34.37 E-value=67 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 028814 132 LQSSVVAAFGSGAAFSLV 149 (203)
Q Consensus 132 ~~Ns~~aG~~tGavl~~~ 149 (203)
+.+.-+.|.++|++++..
T Consensus 112 ~L~~Gy~ga~~Gaa~G~~ 129 (243)
T PRK13731 112 WLNRGYEGAAVGAALGAG 129 (243)
T ss_pred HHhhchhhHHHHHHhhhh
Confidence 333344555666555543
No 29
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=33.42 E-value=1.1e+02 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=13.3
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHhhh
Q 028814 45 EAAI-VTATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 45 e~cv-~t~~g~v~G~~lG~~~G~~~ 68 (203)
+-|+ .+++=.+.|.++|.+++++.
T Consensus 23 D~cl~~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 23 DRCLSDTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444 45555555666666666654
No 30
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=33.03 E-value=34 Score=24.47 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhh-hhhhhhhhcCCc
Q 028814 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVA-PFQQVQAVAGGP 102 (203)
Q Consensus 51 ~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~ 102 (203)
+++.+.|.++|+|++-.. +++.+..+| |.+++.++ .+.+ ||..+
T Consensus 4 ilali~G~~~Gff~ar~~--~~k~l~~NP---pine~mir~M~~Q---MG~kp 48 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKY--MEKQLKENP---PINEKMIRAMMMQ---MGRKP 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHCC---CCCHHHHHHHHHH---hCCCc
Confidence 344455555555554333 122221122 24555544 4444 77765
No 31
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=32.93 E-value=81 Score=24.85 Aligned_cols=52 Identities=13% Similarity=-0.013 Sum_probs=29.0
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHH
Q 028814 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (203)
Q Consensus 124 e~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~ 175 (203)
.++..---.-|+++-|+.+|+++|.-.-+...++.+++=.+-..|.+.+.+.
T Consensus 32 ~~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~ 83 (118)
T PF12597_consen 32 RNVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGS 83 (118)
T ss_pred hHHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHH
Confidence 3344444456777777777777776554322234455445555565555443
No 32
>PRK10404 hypothetical protein; Provisional
Probab=31.14 E-value=96 Score=23.77 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028814 49 VTATTAINGAAIGAFLG 65 (203)
Q Consensus 49 ~t~~g~v~G~~lG~~~G 65 (203)
.-+++++.|+++|++++
T Consensus 83 avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677888999998875
No 33
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=29.55 E-value=3.1e+02 Score=22.36 Aligned_cols=100 Identities=13% Similarity=-0.037 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHH
Q 028814 44 VEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (203)
Q Consensus 44 ~e~cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~i 123 (203)
-......+++.+.|+++|++.|+.......+. +..++..+...-++.-.++.....++..|..+ -..+|..-
T Consensus 36 ~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~-----k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~---e~~i~~~R 107 (149)
T TIGR00983 36 FGTGTCYLTGLAIGALNGLRLGLKETQSMPWT-----KLRLNQILNMVTRRGPFWGNTLGILALVYNGI---NSIIEATR 107 (149)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcH-----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 45566888999999999999999975433211 11234444444444433444333344444433 33444333
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhhcC
Q 028814 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSG 151 (203)
Q Consensus 124 e~~Rgk~D~~Ns~~aG~~tGavl~~~~G 151 (203)
.+-=-.+-+.-..+.|.+=-+--+.+.-
T Consensus 108 ~k~D~~Nsv~AGa~TGal~~~~~G~r~~ 135 (149)
T TIGR00983 108 GKHDDFNSVAAGALTGALYKSTRGLRGM 135 (149)
T ss_pred ccchhhHhHHHHHHHHHHHHhccChHHH
Confidence 3322345555555555555554455544
No 34
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=29.07 E-value=88 Score=25.37 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHHHHHHhcCCch-------------------hhhHH-HHHHHHHHHHHHHHHHHhhhc
Q 028814 21 DVQFKLKELENGYKSWLAKQPLP-------------------VEAAI-VTATTAINGAAIGAFLGVMTQ 69 (203)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~q~~~-------------------~e~cv-~t~~g~v~G~~lG~~~G~~~~ 69 (203)
+-++.+++||+ +|+...... ...-. ++..-.+.|..+|+|+|++..
T Consensus 42 ~~~~~lR~LEe---~Wmd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlL~G~liGff~g~~~~ 107 (140)
T PF13373_consen 42 NSQRDLRQLEE---RWMDSGSNPAARAGGGGAGDNGDQFNSAVDASNSGHNDDLLWGLLIGFFFGLFSL 107 (140)
T ss_pred hhHHHHHHHHH---HHHhCCCcccccCCCCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHhH
Confidence 56677777876 466554331 11112 666667788888888888773
No 35
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.90 E-value=2.3e+02 Score=20.17 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=18.5
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 028814 36 WLAKQPLPVEAAIVTATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 36 ~~~~q~~~~e~cv~t~~g~v~G~~lG~~~G~~~ 68 (203)
..+..|..|.-.+-.+.+.+.|.++|.++-++.
T Consensus 48 ~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 48 IVPDKPVSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555556666666666666655543
No 36
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=27.86 E-value=3.1e+02 Score=27.02 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred HhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814 117 AGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF 183 (203)
Q Consensus 117 sg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~ 183 (203)
..+-|.+.++|.++=-.+-++-|+++|.+ +.+.| -....|.+++.-|++-+++.-+..++.++.+
T Consensus 272 glt~~~~d~~~~~kwsv~~~cnG~laGlV-aiT~g-c~~v~pWaAiviG~va~~~~~~~~kL~~~lk 336 (500)
T KOG0682|consen 272 GLTWLIIDYLRHGKWSVIGLCNGILAGLV-AITPG-CGVVEPWAAIVIGAVAGLVCNAANKLKERLK 336 (500)
T ss_pred hhhhhhhhhhhcCCcchhhhHHHHHHHHH-hhcCC-CcccCcHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 44567777888655333344556664433 66666 3344588888888888999988888887765
No 37
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.18 E-value=2.5e+02 Score=20.49 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.5
Q ss_pred CchhhhHHHHHHHHHhHHHHHH
Q 028814 14 LPQKAIKDVQFKLKELENGYKS 35 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~ 35 (203)
.|++.+++++++|+++|...+-
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf 30 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEF 30 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999998886653
No 38
>PRK10132 hypothetical protein; Provisional
Probab=25.87 E-value=2.3e+02 Score=21.97 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028814 49 VTATTAINGAAIGAFLG 65 (203)
Q Consensus 49 ~t~~g~v~G~~lG~~~G 65 (203)
.-+++++.|+++|++++
T Consensus 89 svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 89 SVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56677778888888875
No 39
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.76 E-value=2.7e+02 Score=20.34 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=30.5
Q ss_pred ccCCchhhhHHHHHHHHHhHHHHHHH-HhcCCchhhhHHHHHHHHHHHHHHHHHHH
Q 028814 11 LVQLPQKAIKDVQFKLKELENGYKSW-LAKQPLPVEAAIVTATTAINGAAIGAFLG 65 (203)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~q~~~~e~cv~t~~g~v~G~~lG~~~G 65 (203)
+.-.|++.+++++++|+++|...+-- --.++..-+. +.--+|.+-|.++|+++=
T Consensus 6 ~v~v~~~d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk-~GRDiGIlYG~viGlli~ 60 (70)
T TIGR01149 6 AVFVEPDEFNEVMKRLDEIEEKVEFVNGEVAQRIGKK-VGRDIGILYGLVIGLILF 60 (70)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHHH
Confidence 34457788999999999999877641 1111111111 122245556666666553
No 40
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.09 E-value=79 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 028814 51 ATTAINGAAIGAFLGVMTQD 70 (203)
Q Consensus 51 ~~g~v~G~~lG~~~G~~~~~ 70 (203)
..+.+.|+++|...|++.+.
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 35677888888888888755
No 41
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.51 E-value=1.7e+02 Score=21.46 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCchhhhHHHHHHHHHhHHHHHH-HHhcCCchhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 028814 13 QLPQKAIKDVQFKLKELENGYKS-WLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQ 69 (203)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~q~~~~e~cv~t~~g~v~G~~lG~~~G~~~~ 69 (203)
.-|+..++++.++|++++...+- |-..-+.+.+- +.-=+|.+-|.++|+++-++..
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~~Ev~Qr~Gkk-iGRDIGILYGlVIGlil~~i~~ 67 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKK-IGRDIGILYGLVIGLILCMIYI 67 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Confidence 34567889999999998886653 11110000000 0112455666666666655543
No 42
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=24.25 E-value=37 Score=26.39 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHHHhcC----CchhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 028814 23 QFKLKELENGYKSWLAKQ----PLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (203)
Q Consensus 23 ~~~~~~l~~~~~~~~~~q----~~~~e~cv~t~~g~v~G~~lG~~~G~~~~~ 70 (203)
.+.++++.++.+-|.... +--+|+.+-+.-+++..+++|+++|....-
T Consensus 41 ~~~I~ei~p~Y~PWf~PlwEPPsGEiESLLFaLQAAiGAgiIgY~lG~~~gr 92 (100)
T PRK02898 41 EEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGR 92 (100)
T ss_pred HHHHHHhCCCCcccccccccCCcchHHHHHHHHHHHHhhhhhheeeeehhhh
Confidence 444566666777787644 333588888888888888999999987754
No 43
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=22.76 E-value=98 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhccccCCCCCCC
Q 028814 56 NGAAIGAFLGVMTQDLTSSLPTPP 79 (203)
Q Consensus 56 ~G~~lG~~~G~~~~~~~~~~~~~~ 79 (203)
.+.+.|++.|.+....+-+.|.||
T Consensus 4 lsl~~G~~vG~~~~~l~vp~PAPP 27 (49)
T TIGR03510 4 LSLGAGLLVGALYSLLKVPSPAPP 27 (49)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCc
Confidence 344445555555544444445554
No 44
>PRK11280 hypothetical protein; Provisional
Probab=21.73 E-value=2.5e+02 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.034 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028814 132 LQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177 (203)
Q Consensus 132 ~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~ 177 (203)
..++ +.|.++|++++..-|. .....-+.+.|+++-|++...+..
T Consensus 65 ~~Gt-v~Gav~Gg~~G~~iGg-G~Gr~~at~~Ga~~G~~~G~~i~~ 108 (170)
T PRK11280 65 IAGS-VLGAVAGGVLGHQFGG-GRGKDVATVAGALGGGYAGNQIQG 108 (170)
T ss_pred chhH-HHHHHHHHHhhhhccC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence 3443 4455567777776552 223445566666666665555543
No 45
>PRK01844 hypothetical protein; Provisional
Probab=21.04 E-value=84 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.4
Q ss_pred Cchhhhhh-hhhhhhhcCCc
Q 028814 84 LNPDAVAP-FQQVQAVAGGP 102 (203)
Q Consensus 84 ~~~~~~~~-~k~~~~~~~~~ 102 (203)
.++++++. +.+ ||.++
T Consensus 39 ine~mir~Mm~Q---MGqkP 55 (72)
T PRK01844 39 INEQMLKMMMMQ---MGQKP 55 (72)
T ss_pred CCHHHHHHHHHH---hCCCc
Confidence 46665554 443 77766
No 46
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=21.03 E-value=5.2e+02 Score=21.98 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHh--h-cccchhHHHH--HHHHHHHHhhhhcC
Q 028814 103 LVQARNFAVITGVNAGISCVMKRL--R-GKEDLQSSVV--AAFGSGAAFSLVSG 151 (203)
Q Consensus 103 ~~~a~~fa~~g~~ysg~ec~ie~~--R-gk~D~~Ns~~--aG~~tGavl~~~~G 151 (203)
...|..-.++|.+|=.+|...++- | ..+.-||+++ -+.+.|..++.++=
T Consensus 48 ~~~G~agv~~G~l~P~lD~~~~~~~~~~~~~~~w~~v~R~i~~FvGi~~airkl 101 (193)
T PF07281_consen 48 PLWGLAGVLLGLLLPWLDSFLGESKPRSSRKPDWSSVLRSIGAFVGISFAIRKL 101 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccccccCCccccHHHHHHHHHHHHHHHHHHhhC
Confidence 345555556677777777776665 2 2344567776 45666888888764
No 47
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=20.91 E-value=3e+02 Score=26.38 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHH-------HHhhhhcCCCCCCchHHHHHHHHHHHHHHHHH
Q 028814 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (203)
Q Consensus 104 ~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tG-------avl~~~~G~~~~~~~~aa~~gga~fA~fsga~ 175 (203)
....|+|..|+.++..= +-|.| |..+...+++++| ++++..-. ..+++-+++.|++..+++.+.+
T Consensus 345 ~~~~~~aq~ga~lav~l----k~k~~-~~k~~a~sa~is~~~GITEPaiyGv~l~--~kkp~i~~~ig~~igG~~~g~~ 416 (462)
T TIGR01992 345 IALSNIAQGSAALGIIF----MSRNE-KEKGLSLTSAISAYLGVTEPAMFGVNLK--YKFPFIAAMIGSGLAGLLSGLN 416 (462)
T ss_pred HHHHHHHHHHHHHHHHH----HHCCH-HHHHHHHHHHHHHHhccchHhHHHhccc--hhhHHHHHHHHHHHHHHHHHHh
Confidence 45668888888887632 22322 3444444555444 23333222 2234666777777777777665
No 48
>PRK00523 hypothetical protein; Provisional
Probab=20.82 E-value=89 Score=22.93 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=9.4
Q ss_pred Cchhhhhh-hhhhhhhcCCc
Q 028814 84 LNPDAVAP-FQQVQAVAGGP 102 (203)
Q Consensus 84 ~~~~~~~~-~k~~~~~~~~~ 102 (203)
.++++++. +.+ ||.++
T Consensus 40 ine~mir~M~~Q---MGqKP 56 (72)
T PRK00523 40 ITENMIRAMYMQ---MGRKP 56 (72)
T ss_pred CCHHHHHHHHHH---hCCCc
Confidence 46665554 443 88766
No 49
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=20.50 E-value=1.2e+02 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHH
Q 028814 138 AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQG 173 (203)
Q Consensus 138 aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsg 173 (203)
.|+.+|++++..-| -|-.++.|+++.+++..
T Consensus 45 ~g~~~ga~~g~~~g-----g~~G~~~G~~~G~~~g~ 75 (239)
T TIGR03789 45 IGLGSGALLGALVG-----GPVGAIIGGITGGLIGQ 75 (239)
T ss_pred hhHHHHHHHhhhhc-----cHHHHHHHHHHHHHhhh
Confidence 36666777665433 15556666555555444
No 50
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=20.15 E-value=2.6e+02 Score=18.10 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHH
Q 028814 138 AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAI 170 (203)
Q Consensus 138 aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~ 170 (203)
.|.+.|++++..-+ +.+.....++.++++-++
T Consensus 5 ~Ga~~Ga~~G~~ig-~~~g~~~g~~~Ga~~Ga~ 36 (42)
T PF05433_consen 5 IGAAVGAVAGSQIG-GGNGRTLGAVAGAVAGAL 36 (42)
T ss_pred HHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHH
Confidence 44555666665543 223345555555555444
Done!