Query 028814
Match_columns 203
No_of_seqs 137 out of 608
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 37.3 64 0.0022 23.0 5.1 50 18-67 17-71 (80)
2 3twe_A Alpha4H; unknown functi 30.9 41 0.0014 19.0 2.5 17 17-33 8-24 (27)
3 2lbg_A Major prion protein; co 15.7 1.6E+02 0.0056 16.8 3.0 20 49-68 6-25 (27)
4 2imj_A Hypothetical protein DU 15.1 41 0.0014 27.1 0.5 17 120-136 17-33 (166)
5 2akf_A Coronin-1A; coiled coil 14.7 1.5E+02 0.0051 17.4 2.7 18 17-34 13-30 (32)
6 3bo0_B Preprotein translocase 12.6 3.1E+02 0.011 17.7 5.5 46 23-68 7-57 (65)
7 1z0p_A Hypothetical protein SP 11.7 90 0.0031 22.3 1.4 23 29-51 7-29 (84)
8 1ixm_A SPO0B, protein (sporula 11.2 1.3E+02 0.0045 23.9 2.5 13 132-144 71-83 (192)
9 2zt9_E Cytochrome B6-F complex 10.5 2E+02 0.0069 16.9 2.4 18 51-68 10-27 (31)
10 3owt_C Regulatory protein SIR3 9.7 64 0.0022 18.2 0.0 9 2-10 2-10 (27)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=37.29 E-value=64 Score=22.97 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHhcCCchhhhHH-----HHHHHHHHHHHHHHHHHhh
Q 028814 18 AIKDVQFKLKELENGYKSWLAKQPLPVEAAI-----VTATTAINGAAIGAFLGVM 67 (203)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~q~~~~e~cv-----~t~~g~v~G~~lG~~~G~~ 67 (203)
+++++.+.+++.-.+..+.++.-..+...=+ .|+.|.+.=|++|++.=++
T Consensus 17 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 17 QVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp ----CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666665544443333 4444444334555554443
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.87 E-value=41 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHhHHHH
Q 028814 17 KAIKDVQFKLKELENGY 33 (203)
Q Consensus 17 ~~~~~~~~~~~~l~~~~ 33 (203)
+.++|+|++++.|...+
T Consensus 8 keledlqerlrklrkkl 24 (27)
T 3twe_A 8 KELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35677888777776654
No 3
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=15.65 E-value=1.6e+02 Score=16.79 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 028814 49 VTATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 49 ~t~~g~v~G~~lG~~~G~~~ 68 (203)
..+.+.+.|++-|.++|+.+
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 34445555655556655543
No 4
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=15.10 E-value=41 Score=27.06 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHhhcccchhHHH
Q 028814 120 SCVMKRLRGKEDLQSSV 136 (203)
Q Consensus 120 ec~ie~~Rgk~D~~Ns~ 136 (203)
|.+++++|.-+|.||+=
T Consensus 17 EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 17 ESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhccc
Confidence 78899999999999974
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=14.66 E-value=1.5e+02 Score=17.41 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHhHHHHH
Q 028814 17 KAIKDVQFKLKELENGYK 34 (203)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~ 34 (203)
.-.+++|++++.|+...+
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345778888888877543
No 6
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=12.55 E-value=3.1e+02 Score=17.73 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHH--HHhcCCchhhhH---HHHHHHHHHHHHHHHHHHhhh
Q 028814 23 QFKLKELENGYKS--WLAKQPLPVEAA---IVTATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 23 ~~~~~~l~~~~~~--~~~~q~~~~e~c---v~t~~g~v~G~~lG~~~G~~~ 68 (203)
.+-+++...++++ |-...|..-|-- ..|+...+.=+++|+++.++.
T Consensus 7 ~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid 57 (65)
T 3bo0_B 7 VAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPA 57 (65)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445556666666 666656666666 577777776677887776654
No 7
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=11.65 E-value=90 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCchhhhHHHHH
Q 028814 29 LENGYKSWLAKQPLPVEAAIVTA 51 (203)
Q Consensus 29 l~~~~~~~~~~q~~~~e~cv~t~ 51 (203)
...+++.|++.|-...|.++++.
T Consensus 7 FlkdFE~Wv~tQi~ine~Am~~s 29 (84)
T 1z0p_A 7 FLKDFEDWVKTQIQVNQLAMATS 29 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988888777543
No 8
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=11.20 E-value=1.3e+02 Score=23.90 Aligned_cols=13 Identities=15% Similarity=-0.200 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHH
Q 028814 132 LQSSVVAAFGSGA 144 (203)
Q Consensus 132 ~~Ns~~aG~~tGa 144 (203)
..|+.++|++-|-
T Consensus 71 i~~P~la~lLl~K 83 (192)
T 1ixm_A 71 LKTPHLAFDFLTF 83 (192)
T ss_dssp TTCHHHHHHHHHG
T ss_pred CCCHHHHHHHHHH
Confidence 4445556555443
No 9
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=10.47 E-value=2e+02 Score=16.90 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028814 51 ATTAINGAAIGAFLGVMT 68 (203)
Q Consensus 51 ~~g~v~G~~lG~~~G~~~ 68 (203)
.++...|.++|+++|+-.
T Consensus 10 ~l~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 10 FLALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777888888643
No 10
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=9.66 E-value=64 Score=18.16 Aligned_cols=9 Identities=56% Similarity=0.925 Sum_probs=7.1
Q ss_pred cccchhhhc
Q 028814 2 EKGNEKVMS 10 (203)
Q Consensus 2 ~~~~~~~~~ 10 (203)
||||.||..
T Consensus 2 ekgnakmid 10 (27)
T 3owt_C 2 EKGNAKMID 10 (27)
T ss_pred CCCcceeee
Confidence 788988863
Done!