Query 028814
Match_columns 203
No_of_seqs 137 out of 608
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 13.0 24 0.0018 26.2 0.5 16 120-135 13-28 (155)
2 d2h9da1 a.130.1.1 (A:1-94) Sal 11.0 1.1E+02 0.0077 19.9 3.4 27 13-39 2-30 (94)
3 d1ecma_ a.130.1.1 (A:) Chorism 10.8 84 0.0061 20.0 2.8 24 17-40 1-24 (91)
4 d2ezwa1 a.31.1.1 (A:12-61) cAM 10.1 56 0.0041 19.8 1.4 20 13-32 28-47 (50)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 9.8 4.1E+02 0.03 21.3 7.8 14 128-141 252-268 (383)
6 d1z0pa1 a.2.18.1 (A:1-77) Hypo 8.4 66 0.0048 20.9 1.4 23 29-51 7-29 (77)
7 d1t5ja_ a.209.1.1 (A:) Hypothe 8.0 1.5E+02 0.011 22.1 3.8 33 118-150 240-273 (301)
8 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 7.9 88 0.0064 20.0 1.9 23 114-136 21-44 (75)
9 d1v54j_ f.23.4.1 (J:) Mitochon 7.5 1.4E+02 0.01 18.3 2.6 28 44-71 27-55 (58)
10 d1uk5a_ a.7.7.1 (A:) BAG-famil 6.6 1.5E+02 0.011 20.3 2.7 27 10-36 19-49 (111)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=12.96 E-value=24 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHHhhcccchhHH
Q 028814 120 SCVMKRLRGKEDLQSS 135 (203)
Q Consensus 120 ec~ie~~Rgk~D~~Ns 135 (203)
|.+++++|--+|.||+
T Consensus 13 etA~~KVr~AEdaWNs 28 (155)
T d2imja1 13 ESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 7788999999999997
No 2
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.00 E-value=1.1e+02 Score=19.86 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=20.9
Q ss_pred CCch--hhhHHHHHHHHHhHHHHHHHHhc
Q 028814 13 QLPQ--KAIKDVQFKLKELENGYKSWLAK 39 (203)
Q Consensus 13 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 39 (203)
++|+ ..|++++++++.++.++-.-+..
T Consensus 2 ~~p~d~~~L~~lR~~ID~ID~~i~~LL~~ 30 (94)
T d2h9da1 2 KTPEDCTGLADIREAIDRIDLDIVQALGR 30 (94)
T ss_dssp CCGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 46999999999999987765544
No 3
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=10.84 E-value=84 Score=20.01 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhcC
Q 028814 17 KAIKDVQFKLKELENGYKSWLAKQ 40 (203)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~q 40 (203)
|+|+++++.+++++.++-.-+...
T Consensus 1 n~L~~lR~~ID~iD~~i~~Ll~~R 24 (91)
T d1ecma_ 1 NPLLALREKISALDEKLLALLAER 24 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888766553
No 4
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.07 E-value=56 Score=19.82 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.2
Q ss_pred CCchhhhHHHHHHHHHhHHH
Q 028814 13 QLPQKAIKDVQFKLKELENG 32 (203)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~ 32 (203)
.-|.+|++=+++.|+.|+.+
T Consensus 28 ~rPe~P~~FLreyFekLe~e 47 (50)
T d2ezwa1 28 ARPERPMAFLREYFEKLEKE 47 (50)
T ss_dssp CCCSCHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHhh
Confidence 36889999999999999864
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.77 E-value=4.1e+02 Score=21.27 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=8.0
Q ss_pred cccchh---HHHHHHHH
Q 028814 128 GKEDLQ---SSVVAAFG 141 (203)
Q Consensus 128 gk~D~~---Ns~~aG~~ 141 (203)
+|-|.. |.+++|.+
T Consensus 252 ~k~~~~~~~nG~LaGLV 268 (383)
T d1u7ga_ 252 GLPSLLGACSGAIAGLV 268 (383)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhhhh
Confidence 456554 65566555
No 6
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=8.43 E-value=66 Score=20.94 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.4
Q ss_pred hHHHHHHHHhcCCchhhhHHHHH
Q 028814 29 LENGYKSWLAKQPLPVEAAIVTA 51 (203)
Q Consensus 29 l~~~~~~~~~~q~~~~e~cv~t~ 51 (203)
...+|+.|+..|-.+.|.++++.
T Consensus 7 FlkdFe~Wv~~Qi~in~mAm~~s 29 (77)
T d1z0pa1 7 FLKDFEDWVKTQIQVNQLAMATS 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999888777777544
No 7
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.04 E-value=1.5e+02 Score=22.08 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=19.7
Q ss_pred hHHHHHHHhhcccch-hHHHHHHHHHHHHhhhhc
Q 028814 118 GISCVMKRLRGKEDL-QSSVVAAFGSGAAFSLVS 150 (203)
Q Consensus 118 g~ec~ie~~Rgk~D~-~Ns~~aG~~tGavl~~~~ 150 (203)
+.+.+...++---|- .|+.++|++.|+.+|..+
T Consensus 240 f~~ai~~av~~GgDtdt~aai~Gal~GA~~G~~~ 273 (301)
T d1t5ja_ 240 FKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKN 273 (301)
T ss_dssp HHHHHHHHHTSCBSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhChhc
Confidence 455666666643343 366667777777776643
No 8
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.92 E-value=88 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHhHhHHHHHHHhhc-ccchhHHH
Q 028814 114 GVNAGISCVMKRLRG-KEDLQSSV 136 (203)
Q Consensus 114 ~~ysg~ec~ie~~Rg-k~D~~Ns~ 136 (203)
-+|..++--...+|. .++|.|+|
T Consensus 21 eIy~~i~~~fpy~r~~~~gWkNSI 44 (75)
T d1kq8a_ 21 EINEYLMGKFPFFRGSYTGWRNSV 44 (75)
T ss_dssp HHHHHHHHHCTTGGGTCSCCHHHH
T ss_pred HHHHHHHHhCcccccCCccchhHh
Confidence 456666666677775 67788887
No 9
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.45 E-value=1.4e+02 Score=18.35 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=19.6
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHhhhccc
Q 028814 44 VEAAI-VTATTAINGAAIGAFLGVMTQDL 71 (203)
Q Consensus 44 ~e~cv-~t~~g~v~G~~lG~~~G~~~~~~ 71 (203)
++..+ .+.++...++....++.+...++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l~~a~~ 55 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCLGWASF 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555 77777777777777777776664
No 10
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.61 E-value=1.5e+02 Score=20.30 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=15.9
Q ss_pred cccCCchhh-hH---HHHHHHHHhHHHHHHH
Q 028814 10 SLVQLPQKA-IK---DVQFKLKELENGYKSW 36 (203)
Q Consensus 10 ~~~~~~~~~-~~---~~~~~~~~l~~~~~~~ 36 (203)
+...+|+|| +. .++.++++|+.+....
T Consensus 19 ~~~~p~~~P~~~ki~~i~~~v~~L~~~V~~f 49 (111)
T d1uk5a_ 19 EAETPPKHPGVLKVEAILEKVQGLEQAVDSF 49 (111)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 445566665 44 4466666676666654
Done!