Query 028815
Match_columns 203
No_of_seqs 224 out of 815
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1110 Putative steroid membr 100.0 6E-49 1.3E-53 329.5 14.7 175 15-201 1-177 (183)
2 KOG1108 Predicted heme/steroid 100.0 3E-31 6.5E-36 231.0 8.3 103 81-183 59-161 (281)
3 PF00173 Cyt-b5: Cytochrome b5 99.6 1.4E-15 3.1E-20 108.1 6.6 72 84-179 2-75 (76)
4 COG4892 Predicted heme/steroid 99.6 2.7E-15 5.8E-20 110.6 5.0 77 81-183 1-79 (81)
5 KOG0536 Flavohemoprotein b5+b5 99.2 2.5E-11 5.4E-16 98.9 6.4 74 83-182 69-145 (145)
6 KOG0537 Cytochrome b5 [Energy 99.0 2E-10 4.3E-15 91.8 3.3 56 80-139 3-60 (124)
7 COG5274 CYB5 Cytochrome b invo 98.5 1E-07 2.2E-12 79.9 4.9 58 82-143 50-109 (164)
8 PLN03198 delta6-acyl-lipid des 98.4 2.6E-07 5.6E-12 88.9 4.0 61 76-140 98-159 (526)
9 PLN03199 delta6-acyl-lipid des 98.3 5.6E-07 1.2E-11 85.5 4.7 53 82-139 24-77 (485)
10 PLN02252 nitrate reductase [NA 98.3 5.4E-07 1.2E-11 91.4 3.7 56 80-139 516-573 (888)
11 KOG4232 Delta 6-fatty acid des 97.2 0.00015 3.1E-09 68.8 1.7 54 82-140 8-63 (430)
12 KOG4576 Sulfite oxidase, heme- 93.9 0.043 9.4E-07 45.7 2.5 45 82-129 80-124 (167)
13 PF14901 Jiv90: Cleavage induc 62.8 5.1 0.00011 31.1 1.8 16 100-115 56-71 (94)
14 PF07172 GRP: Glycine rich pro 61.6 15 0.00032 28.3 4.1 15 24-38 6-20 (95)
15 PF10875 DUF2670: Protein of u 52.8 22 0.00047 29.3 3.9 34 4-41 1-45 (139)
16 PHA02681 ORF089 virion membran 45.3 77 0.0017 24.5 5.6 17 77-93 45-61 (92)
17 PRK10781 rcsF outer membrane l 44.9 33 0.00071 28.2 3.8 21 76-96 44-65 (133)
18 PF12596 Tnp_P_element_C: 87kD 44.2 19 0.00041 28.5 2.3 31 151-181 71-102 (106)
19 PHA02902 putative IMV membrane 41.6 91 0.002 23.0 5.3 17 77-93 47-63 (70)
20 PF10717 ODV-E18: Occlusion-de 37.0 41 0.0009 25.8 3.0 26 15-40 19-44 (85)
21 PRK06549 acetyl-CoA carboxylas 30.7 40 0.00087 27.3 2.2 15 101-115 5-19 (130)
22 PHA02310 hypothetical protein 29.8 42 0.00092 27.6 2.2 23 101-123 89-111 (130)
23 COG4880 Secreted protein conta 28.0 45 0.00097 33.0 2.4 36 79-118 96-131 (603)
24 PF05603 DUF775: Protein of un 27.4 35 0.00076 29.4 1.4 16 159-174 181-196 (202)
25 TIGR03593 yidC_nterm membrane 26.6 71 0.0015 29.0 3.3 22 23-44 4-25 (366)
26 PRK06488 sulfur carrier protei 26.4 94 0.002 21.3 3.2 31 83-114 14-44 (65)
27 PF06522 B12D: NADH-ubiquinone 25.3 82 0.0018 22.8 2.9 30 17-46 5-34 (73)
28 PF04272 Phospholamban: Phosph 25.1 92 0.002 21.5 2.8 17 22-38 34-50 (52)
29 PF02515 CoA_transf_3: CoA-tra 25.0 76 0.0017 26.3 3.0 46 79-139 33-78 (191)
30 PF04689 S1FA: DNA binding pro 24.1 43 0.00094 24.6 1.2 16 76-91 47-62 (69)
31 cd00565 ThiS ThiaminS ubiquiti 24.0 1.2E+02 0.0026 20.7 3.4 31 83-114 14-44 (65)
32 PF15361 RIC3: Resistance to i 23.5 1.6E+02 0.0034 24.4 4.6 21 23-43 88-108 (152)
33 PRK13798 putative OHCU decarbo 23.3 92 0.002 26.0 3.2 26 150-175 89-114 (166)
34 PRK08053 sulfur carrier protei 23.2 1.3E+02 0.0029 20.8 3.5 29 84-113 16-44 (66)
35 TIGR03180 UraD_2 OHCU decarbox 23.0 94 0.002 25.7 3.1 26 150-175 84-109 (158)
36 TIGR03164 UHCUDC OHCU decarbox 22.6 97 0.0021 25.6 3.1 25 150-174 84-108 (157)
37 TIGR01683 thiS thiamine biosyn 21.6 1.5E+02 0.0033 20.2 3.6 28 83-111 13-40 (64)
38 smart00674 CENPB Putative DNA- 21.4 54 0.0012 22.2 1.2 14 163-176 50-63 (66)
39 PRK11430 putative CoA-transfer 20.3 1.2E+02 0.0026 28.2 3.7 42 79-135 106-147 (381)
40 PF13068 DUF3932: Protein of u 20.2 1.5E+02 0.0032 22.2 3.3 16 5-20 32-47 (81)
No 1
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=100.00 E-value=6e-49 Score=329.53 Aligned_cols=175 Identities=41% Similarity=0.688 Sum_probs=147.2
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhccccCCCCCCcchhhhhhhHHHhhHHHhhhccCCCCCCCccccCCCCHHHHhhhcC
Q 028815 15 YTGLSPAAFFTILALMCVVYKTVCSMFVDPEPPEDLKNKLISSSAAASAATAANFSNQTMIPETVQLGDVTEHELRAYDG 94 (203)
Q Consensus 15 ~tglsp~~~~t~~~~~~~~y~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~fT~eELa~ydG 94 (203)
|+||+|..++|.++++++++.++..++.++...-.. . .+.+...+.+|.. .+.+.++||.+||++|||
T Consensus 1 ~~gl~~~~~~tpl~~al~~~~l~~~~kl~~~~~r~~----~-------~~~~~~~~~~P~~-~~P~~~dfT~eEL~~ydG 68 (183)
T KOG1110|consen 1 YVGLAPKVFFTPLALALLIFLLFVGLKLSRFKFRRD----S-------EKSDGSTEEPPKE-SLPKVRDFTVEELRQYDG 68 (183)
T ss_pred CCccchhhhhhhHHHHHHHHHHHhheeeeeeecccc----c-------cccccCCCCCCcc-CCCcccccCHHHHHhcCC
Confidence 689999999999999999999999988775311010 0 0001111111211 223335999999999999
Q ss_pred CCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhhCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCc
Q 028815 95 SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYV 174 (203)
Q Consensus 95 ~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sf~~e~l~~dl~~L~~~el~~L~~W~~~F~~KYp 174 (203)
.++++||||||||+|||||+|+.||||||+|..||||||||+|++|||+..++++|++||+..|+++|++|+++|+.||+
T Consensus 69 s~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~eal~eWE~~fk~KY~ 148 (183)
T KOG1110|consen 69 SDPDKPILLAINGKVYDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEALNEWETKFKAKYP 148 (183)
T ss_pred CCCCCceEEEecceEEEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCC--CCCCCCCCCCCCCCCCCC
Q 028815 175 KVGQIVSEQ--TSKPTKNGDKVPENQNHD 201 (203)
Q Consensus 175 ~VG~L~~~~--~~~~s~~~~~~p~~~~~~ 201 (203)
+||+|++.. ..++|++++++...|+++
T Consensus 149 ~VG~L~~~~~e~~~~s~~~~~~~~~~~~~ 177 (183)
T KOG1110|consen 149 VVGRLVKKGEENEEYSPEEDTKDAAQDQM 177 (183)
T ss_pred eeEEeecCCcccccCCccccccccccccc
Confidence 999999986 449999999999988775
No 2
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=99.97 E-value=3e-31 Score=231.02 Aligned_cols=103 Identities=37% Similarity=0.678 Sum_probs=100.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhhCCCCCCCCCCCCCCCHHHHH
Q 028815 81 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELE 160 (203)
Q Consensus 81 ~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sf~~e~l~~dl~~L~~~el~ 160 (203)
...||+|||++|||+++++||||||.|.|||||+++.+||||++|++||||||||||.++.|.+..+.+|+.+|+++|+.
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEll 138 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELL 138 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCceeEEEecCC
Q 028815 161 VLQDWEYKFMEKYVKVGQIVSEQ 183 (203)
Q Consensus 161 ~L~~W~~~F~~KYp~VG~L~~~~ 183 (203)
.|.+|..||.+.|++||+|++..
T Consensus 139 si~dWrsFY~k~Y~~vGrv~gry 161 (281)
T KOG1108|consen 139 SIADWRSFYQKDYVYVGRVIGRY 161 (281)
T ss_pred hhhhhhhhhhcccceeeEEeeee
Confidence 99999999999999999999986
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.61 E-value=1.4e-15 Score=108.05 Aligned_cols=72 Identities=36% Similarity=0.504 Sum_probs=61.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCC--cccccccCChhHHHhhhCCCCCCCCCCCCCCCHHHHHH
Q 028815 84 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGG--PYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEV 161 (203)
Q Consensus 84 fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG--~Y~~fAGrDaSrala~~sf~~e~l~~dl~~L~~~el~~ 161 (203)
||.+||++|| + +.++||+|+|+|||||... .++||| .+..+||+|+|.+| +...
T Consensus 2 ~t~~el~~h~--~-~~~~~v~i~g~VYDvt~~~-~~hpgg~~~~~~~aG~D~T~~f--------------------~~~~ 57 (76)
T PF00173_consen 2 YTWEELAKHN--K-KGDCWVIIDGKVYDVTDFL-DRHPGGADILKKYAGRDATDAF--------------------EEAF 57 (76)
T ss_dssp EEHHHHTTTE--E-TTEEEEEETTEEEECTTTT-TTSTTTSHHHHTTTTSBTHHHH--------------------HHHT
T ss_pred CCHHHHhhhC--C-CCCEEEEECCEEccccccc-ccccchhHHHHHhccccccHHH--------------------hhcc
Confidence 7999999999 2 3579999999999999965 579999 68999999999999 2234
Q ss_pred HHHHHHHHhhcCceeEEE
Q 028815 162 LQDWEYKFMEKYVKVGQI 179 (203)
Q Consensus 162 L~~W~~~F~~KYp~VG~L 179 (203)
...|..++..+|.+||+|
T Consensus 58 h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 58 HSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp HHHHHHHHHHGCGEEEEE
T ss_pred CcHHHHHHccCCCEEEEe
Confidence 557888999999999998
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.57 E-value=2.7e-15 Score=110.61 Aligned_cols=77 Identities=30% Similarity=0.573 Sum_probs=60.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCccccc-ccCChhHHHhhh-CCCCCCCCCCCCCCCHHH
Q 028815 81 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMF-AGRDASRALALM-SFDPQDLTGNIEGLSDSE 158 (203)
Q Consensus 81 ~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~f-AGrDaSrala~~-sf~~e~l~~dl~~L~~~e 158 (203)
+|.||+|||.+|||++ .|+|||++|+|||||-+.. |+-|-+.... ||+|.|..|... ..-
T Consensus 1 mrefTLEELs~ynG~n--GpaYiA~~G~VYDvS~s~~-W~dGtHqglhsaG~DLs~~~~~~aphg--------------- 62 (81)
T COG4892 1 MREFTLEELSKYNGEN--GPAYIAVNGTVYDVSLSPS-WGDGTHQGLHSAGKDLSSEFNSCAPHG--------------- 62 (81)
T ss_pred CceecHHHHHhhcCCC--CCeEEEECCEEEeeccCcc-cCCCccccccccchhHHHHHhhcCCch---------------
Confidence 3689999999999998 3899999999999998864 6767666655 999999888732 111
Q ss_pred HHHHHHHHHHHhhcCceeEEEecCC
Q 028815 159 LEVLQDWEYKFMEKYVKVGQIVSEQ 183 (203)
Q Consensus 159 l~~L~~W~~~F~~KYp~VG~L~~~~ 183 (203)
++. -+.||+||.|++..
T Consensus 63 ~ei--------l~~~PvVG~L~k~~ 79 (81)
T COG4892 63 MEI--------LTSLPVVGALIKEK 79 (81)
T ss_pred hHH--------HhcCchhheeeccc
Confidence 112 27899999999764
No 5
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.21 E-value=2.5e-11 Score=98.92 Aligned_cols=74 Identities=31% Similarity=0.460 Sum_probs=60.3
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhhCCCCCCCCCCCCCCCHHHHH
Q 028815 83 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALMSFDPQDLTGNIEGLSDSELE 160 (203)
Q Consensus 83 ~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~sf~~e~l~~dl~~L~~~el~ 160 (203)
.+|.+||++|+-.++ ||++|+|+|||||.... |+|||.- -..||||||..|.+
T Consensus 69 ~vt~~El~KH~~~dD---cW~~i~G~VYnVt~Yl~-fHPgG~d~lmk~aGrD~T~~Fnk--------------------- 123 (145)
T KOG0536|consen 69 PVTAEELKKHNKKDD---CWIAIRGKVYNVTAYLD-FHPGGVDELMKHAGRDATKLFNK--------------------- 123 (145)
T ss_pred ccCHHHHHhhCCccc---eEEEEcCEEEecccccc-cCCCCHHHHHHhcCcchHHHHHH---------------------
Confidence 489999999999883 99999999999999975 6999984 47799999999985
Q ss_pred HHHHHHHHHh-hcCceeEEEecC
Q 028815 161 VLQDWEYKFM-EKYVKVGQIVSE 182 (203)
Q Consensus 161 ~L~~W~~~F~-~KYp~VG~L~~~ 182 (203)
.+.|...=+ =|=.+||.|++.
T Consensus 124 -~H~WVN~e~LL~~c~VGvl~d~ 145 (145)
T KOG0536|consen 124 -YHAWVNYEELLKKCFVGVLVDR 145 (145)
T ss_pred -HHHHhcHHHHHhhceeeeeccC
Confidence 567774322 356789988763
No 6
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.01 E-value=2e-10 Score=91.85 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=46.9
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 80 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 80 ~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
..+.||++|.++||..+ .|||.|+|+|||||+..+ =||||. ....||+|||++|--
T Consensus 3 ~~k~~~~~EV~kHn~~~---d~Wvii~gkVYDvT~Fl~-eHPGG~~vLl~~AGkDaT~~F~~ 60 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKD---DCWVIIHGKVYDVTSFLD-EHPGGEDVLLEYAGKDATEAFED 60 (124)
T ss_pred ccccccHHHHHhhcCCC---CeEEEECCEEEeccchhh-hCCChHHHHHHHhchhhHHhccc
Confidence 34679999999999766 599999999999998542 388985 568999999998864
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=98.53 E-value=1e-07 Score=79.88 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=48.8
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhhCCC
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALMSFD 143 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~sf~ 143 (203)
..++.+|+.+++..+ .+||.|+|+|||||.... +||||.- ...+|+|||.+|...-.+
T Consensus 50 ~~~~~eev~~h~~~~---d~~ivi~g~VyDvs~fl~-~HPGGe~ii~~~~g~Dat~~f~~~~~~ 109 (164)
T COG5274 50 KPITAEEVAKHNKSE---DCWIVINGKVYDVSQFLD-EHPGGEDIIKDTAGKDATKAFNFLHHS 109 (164)
T ss_pred ccccHHHHHHhcCcc---ceEEEEcCEEEEhhhccc-cCCCcceeehhccCchhhhhhcccccc
Confidence 458999999999987 299999999999998653 6999874 588999999999876443
No 8
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.38 E-value=2.6e-07 Score=88.94 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=49.6
Q ss_pred CCccccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc-ccccccCChhHHHhhh
Q 028815 76 PETVQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP-YAMFAGRDASRALALM 140 (203)
Q Consensus 76 ~~P~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~-Y~~fAGrDaSrala~~ 140 (203)
.++.+.+.||.+|+++++..+ .|||+|+|+|||||+..+ .+|||. ....+|+|||.+|...
T Consensus 98 ~~~~~~~~~t~~ev~~H~~~~---d~Wivi~gkVYDvT~fl~-~HPGG~~i~~~aG~DaT~~F~~~ 159 (526)
T PLN03198 98 SKEKKSKSHLLSEVAAHNKPN---DCWIVIKNKVYDVSDFAA-EHPGGSVISTYFGRDGTDAFSSF 159 (526)
T ss_pred chhhccCcCCHHHHHhhCCCC---CeEEEECCEEEecHHHHH-hCCCchHHHHhcCCcHhHHHHHh
Confidence 344555689999999999876 499999999999998643 599997 2368999999999653
No 9
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.32 E-value=5.6e-07 Score=85.51 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=45.4
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc-cccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY-AMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y-~~fAGrDaSrala~ 139 (203)
+.||.+|+++++..+ .+||.|+|+|||||+.. -+|||.- ...||+|||.+|..
T Consensus 24 ~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~f~--~HPGG~~i~~~aG~DaT~~F~~ 77 (485)
T PLN03199 24 QKISWQEVKKHASPD---DAWIIHQNKVYDVSNWH--DHPGGAVIFTHAGDDMTDIFAA 77 (485)
T ss_pred CccCHHHHHhhCCCC---CeEEEECCEEEcCCCcC--cCCCchHHHhhCCCChhHHHHH
Confidence 569999999998875 48999999999999873 5999972 36799999999965
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=98.27 E-value=5.4e-07 Score=91.42 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=48.0
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 80 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 80 ~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
..+.||.+||++|+..+ .+||.|+|+|||||.... .||||. ...+||+|||..|..
T Consensus 516 ~~~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~fl~-~HPGG~~~I~~~aG~DaT~~F~~ 573 (888)
T PLN02252 516 GSKQYTMSEVRKHNSED---SCWIVVHGHVYDCTRFLK-DHPGGADSILINAGTDCTEEFDA 573 (888)
T ss_pred ccceeCHHHHHhhCcCC---CeEEEECCEEEeCHHHHH-HCCChHHHHHhhcCCCcHHHHhh
Confidence 45789999999999875 499999999999998643 599995 568999999999974
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=97.20 E-value=0.00015 Score=68.76 Aligned_cols=54 Identities=30% Similarity=0.477 Sum_probs=46.2
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 140 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 140 (203)
+.+|-|+++++|+.++ .|++|.| |||||.-.. -+|||+ ..+.+|.|||.+|...
T Consensus 8 ~~~~we~~~~~~~~~~---~W~~id~-vYd~s~~~~-~HPGG~~~I~~~~g~DaTdaF~Af 63 (430)
T KOG4232|consen 8 TTFSWEGKRKHDKAEG---LWLVIDG-VYDISDWIK-RHPGGSRVIEHYAGQDATDAFEAF 63 (430)
T ss_pred eeeeccchhhccCCCc---eEEEeec-cccHHHHHH-hCCCchhHHHHhcCCccchHHHHh
Confidence 4689999999999983 7999999 999998532 489996 5799999999999765
No 12
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=93.93 E-value=0.043 Score=45.70 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccc
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFA 129 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fA 129 (203)
..+|.||+++|+... .+|||-..--|||||.... -+|||.--.+|
T Consensus 80 ~iY~~EEV~~H~s~e--~rIWVTyg~gVyDVTdFv~-~HPGGdKillA 124 (167)
T KOG4576|consen 80 HIYTKEEVSSHTSPE--TRIWVTYGSGVYDVTDFVD-LHPGGDKILLA 124 (167)
T ss_pred cchhHHHHHhcCCCc--cceEEEecCcceeHHHHHH-hCCCcceeeee
Confidence 358999999998876 5799999999999998654 39999654443
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=62.80 E-value=5.1 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=13.9
Q ss_pred CeEEEEcCeEEecccc
Q 028815 100 PLLMAIKGQIYDVSRS 115 (203)
Q Consensus 100 piylAI~G~VYDVT~g 115 (203)
..|+-.+|+|||||..
T Consensus 56 ~yy~c~~g~VyDiTeW 71 (94)
T PF14901_consen 56 TYYACMDGKVYDITEW 71 (94)
T ss_pred EEEEEcCceEEehhhh
Confidence 4788999999999974
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.65 E-value=15 Score=28.31 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q 028815 24 FTILALMCVVYKTVC 38 (203)
Q Consensus 24 ~t~~~~~~~~y~~~~ 38 (203)
|++|+|++++.+++|
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555566666655
No 15
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=52.81 E-value=22 Score=29.27 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCChHHHHH-----------HHHHHHHHHHHHhccc
Q 028815 4 LYAAVMDTITTYTGLSPAAFFT-----------ILALMCVVYKTVCSMF 41 (203)
Q Consensus 4 ~~~~~~~~~~~~tglsp~~~~t-----------~~~~~~~~y~~~~~~~ 41 (203)
.||+++..|.+ .|+.||+ .++-++.+|+++.++-
T Consensus 1 mwqalrrlIaa----NPMg~flw~iItKWyL~IavaSlI~lyy~v~gl~ 45 (139)
T PF10875_consen 1 MWQALRRLIAA----NPMGFFLWSIITKWYLIIAVASLITLYYTVLGLK 45 (139)
T ss_pred ChHHHHHHHhh----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 39999999986 4665554 2344567888888763
No 16
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=45.31 E-value=77 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=12.9
Q ss_pred CccccCCCCHHHHhhhc
Q 028815 77 ETVQLGDVTEHELRAYD 93 (203)
Q Consensus 77 ~P~~~~~fT~eELa~yd 93 (203)
.++=..++|.+|++.+.
T Consensus 45 ds~F~D~lTpDQVrAlH 61 (92)
T PHA02681 45 ASSFEDKMTDDQVRAFH 61 (92)
T ss_pred CchhhccCCHHHHHHHH
Confidence 44555679999998875
No 17
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=44.88 E-value=33 Score=28.20 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=14.0
Q ss_pred CCccccCCCC-HHHHhhhcCCC
Q 028815 76 PETVQLGDVT-EHELRAYDGSD 96 (203)
Q Consensus 76 ~~P~~~~~fT-~eELa~ydG~~ 96 (203)
+.+-..+.|+ .+||..++-++
T Consensus 44 ~~~s~V~lY~~~eel~~~~~~~ 65 (133)
T PRK10781 44 PRAAPVRLYTNAEELVGKPFRD 65 (133)
T ss_pred CCCCceEEEcCHHHHcCCCCce
Confidence 3444556799 59998876553
No 18
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=44.22 E-value=19 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.512 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHH-HHHhhcCceeEEEec
Q 028815 151 IEGLSDSELEVLQDWE-YKFMEKYVKVGQIVS 181 (203)
Q Consensus 151 l~~L~~~el~~L~~W~-~~F~~KYp~VG~L~~ 181 (203)
+..+.++-|+.+.+|. .+|+.|||.+|.+..
T Consensus 71 ~~e~e~d~l~YiaGyVa~k~~~k~p~L~~~t~ 102 (106)
T PF12596_consen 71 LDEIEEDGLEYIAGYVAKKFRNKYPNLGDYTC 102 (106)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCchhheee
Confidence 3446667788999999 689999999997754
No 19
>PHA02902 putative IMV membrane protein; Provisional
Probab=41.57 E-value=91 Score=23.02 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=12.3
Q ss_pred CccccCCCCHHHHhhhc
Q 028815 77 ETVQLGDVTEHELRAYD 93 (203)
Q Consensus 77 ~P~~~~~fT~eELa~yd 93 (203)
.|+=..++|++|.+++.
T Consensus 47 d~~F~D~lTpDQirAlH 63 (70)
T PHA02902 47 DPLFKDSLTPDQIKALH 63 (70)
T ss_pred CchhhccCCHHHHHHHH
Confidence 45555679999998763
No 20
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=36.98 E-value=41 Score=25.78 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=19.1
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhcc
Q 028815 15 YTGLSPAAFFTILALMCVVYKTVCSM 40 (203)
Q Consensus 15 ~tglsp~~~~t~~~~~~~~y~~~~~~ 40 (203)
-+||+|..+.|||++++.+.+++.-+
T Consensus 19 ~~~l~pn~lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLVIIILLIMLF 44 (85)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHHH
Confidence 36899999999877777666666533
No 21
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=30.72 E-value=40 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.6
Q ss_pred eEEEEcCeEEecccc
Q 028815 101 LLMAIKGQIYDVSRS 115 (203)
Q Consensus 101 iylAI~G~VYDVT~g 115 (203)
.=|-|||++|||+=-
T Consensus 5 ~~itvng~~y~V~ve 19 (130)
T PRK06549 5 FKITIDGKEYLVEME 19 (130)
T ss_pred EEEEECCEEEEEEEE
Confidence 558899999999953
No 22
>PHA02310 hypothetical protein
Probab=29.82 E-value=42 Score=27.57 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=20.0
Q ss_pred eEEEEcCeEEecccccccccCCC
Q 028815 101 LLMAIKGQIYDVSRSRMFYGPGG 123 (203)
Q Consensus 101 iylAI~G~VYDVT~g~~fYgPGG 123 (203)
=.+..+|++|||.+...+|.-+|
T Consensus 89 D~lvwnGkry~v~g~~dW~~QDG 111 (130)
T PHA02310 89 DQFIWTGRVFQLESQGSWFYQDG 111 (130)
T ss_pred CEEEEcCcEEEEccccceeecCC
Confidence 36889999999999999997766
No 23
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.04 E-value=45 Score=33.02 Aligned_cols=36 Identities=22% Similarity=0.539 Sum_probs=28.2
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEeccccccc
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMF 118 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~f 118 (203)
+|.+-...++.-++||.. ||++++||||=+-.....
T Consensus 96 VQVkGvDE~DivKtdG~~----iy~s~~~KvYvi~~~pp~ 131 (603)
T COG4880 96 VQVKGVDEEDIVKTDGER----IYVSVNGKVYVIDKNPPL 131 (603)
T ss_pred ceEccCCchhhcccCCcE----EEEEeCCeEEEEcCCCch
Confidence 555667778888888875 999999999998775433
No 24
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=27.41 E-value=35 Score=29.38 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcCc
Q 028815 159 LEVLQDWEYKFMEKYV 174 (203)
Q Consensus 159 l~~L~~W~~~F~~KYp 174 (203)
++.+++|.++|++|+.
T Consensus 181 ~~~~~~W~~kFe~Kl~ 196 (202)
T PF05603_consen 181 LSVFDKWWEKFERKLR 196 (202)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6799999999999874
No 25
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=26.59 E-value=71 Score=29.02 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 028815 23 FFTILALMCVVYKTVCSMFVDP 44 (203)
Q Consensus 23 ~~t~~~~~~~~y~~~~~~~~~p 44 (203)
++++++|+++++.++..++..+
T Consensus 4 ~il~i~ls~~~~~~w~~~~~~~ 25 (366)
T TIGR03593 4 LILAIALSFVIFLLWQAWQSDP 25 (366)
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777666543
No 26
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=26.44 E-value=94 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=24.5
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeccc
Q 028815 83 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (203)
Q Consensus 83 ~fT~eELa~ydG~~~~~piylAI~G~VYDVT~ 114 (203)
..|..+|.++-+-+. +.+-+|+||.|-.=+.
T Consensus 14 ~~tl~~Ll~~l~~~~-~~vavavN~~iv~~~~ 44 (65)
T PRK06488 14 ATTLALLLAELDYEG-NWLATAVNGELVHKEA 44 (65)
T ss_pred cCcHHHHHHHcCCCC-CeEEEEECCEEcCHHH
Confidence 358999988877764 5688999999987544
No 27
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=25.28 E-value=82 Score=22.78 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHhccccCCCC
Q 028815 17 GLSPAAFFTILALMCVVYKTVCSMFVDPEP 46 (203)
Q Consensus 17 glsp~~~~t~~~~~~~~y~~~~~~~~~p~~ 46 (203)
.|-|.-++..+++..++|.+++.++..|+-
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l~~~PdV 34 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLLLTNPDV 34 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 455777777888888999999988888764
No 28
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=25.09 E-value=92 Score=21.55 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028815 22 AFFTILALMCVVYKTVC 38 (203)
Q Consensus 22 ~~~t~~~~~~~~y~~~~ 38 (203)
+|.+++++++++|.++.
T Consensus 34 nfclilicllli~iiv~ 50 (52)
T PF04272_consen 34 NFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667888888888764
No 29
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=24.99 E-value=76 Score=26.31 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=28.2
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhh
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALAL 139 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~ 139 (203)
+...-++.++|++-|-. =||++|.| ||..|+|....|.|..-.-..
T Consensus 33 ~~~lGl~~~~l~~~nP~----LV~~~isg-----------fG~~Gp~~~~~~~d~~~qA~s 78 (191)
T PF02515_consen 33 LERLGLDYEALRAINPR----LVYCSISG-----------FGQDGPYADRPGYDLVAQAAS 78 (191)
T ss_dssp HHHTT-SHHHHHHH-TT-----EEEEEES-----------S-SSSTTTTS---HHHHHHHT
T ss_pred hHhcCCCHHHHHhhCCC----CeEEEEEe-----------ecCCCccccCCCCCcccccce
Confidence 33445899999987532 38887754 799999999999998644333
No 30
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.07 E-value=43 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=10.8
Q ss_pred CCccccCCCCHHHHhh
Q 028815 76 PETVQLGDVTEHELRA 91 (203)
Q Consensus 76 ~~P~~~~~fT~eELa~ 91 (203)
..|+..+.+..|.|++
T Consensus 47 kkpvskkk~k~e~lkq 62 (69)
T PF04689_consen 47 KKPVSKKKMKRERLKQ 62 (69)
T ss_pred CCcccHHHHHHHHHhc
Confidence 4566666777777765
No 31
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.96 E-value=1.2e+02 Score=20.72 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeccc
Q 028815 83 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (203)
Q Consensus 83 ~fT~eELa~ydG~~~~~piylAI~G~VYDVT~ 114 (203)
..|..+|.++-+-+ .+.|-|++||++-+-+.
T Consensus 14 ~~tv~~ll~~l~~~-~~~i~V~vNg~~v~~~~ 44 (65)
T cd00565 14 GATLAELLEELGLD-PRGVAVALNGEIVPRSE 44 (65)
T ss_pred CCCHHHHHHHcCCC-CCcEEEEECCEEcCHHH
Confidence 36899998887776 36799999999976554
No 32
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=23.52 E-value=1.6e+02 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhccccC
Q 028815 23 FFTILALMCVVYKTVCSMFVD 43 (203)
Q Consensus 23 ~~t~~~~~~~~y~~~~~~~~~ 43 (203)
+-||.++++++|+++...+..
T Consensus 88 lYtiGI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 88 LYTIGIVLFILYTLFKIKKKK 108 (152)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 345788888999988866544
No 33
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=23.29 E-value=92 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCce
Q 028815 150 NIEGLSDSELEVLQDWEYKFMEKYVK 175 (203)
Q Consensus 150 dl~~L~~~el~~L~~W~~~F~~KYp~ 175 (203)
.+..|++.+.+.|.+|-..|++||-+
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kFGf 114 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKFGF 114 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 36778999999999999999998633
No 34
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=23.19 E-value=1.3e+02 Score=20.76 Aligned_cols=29 Identities=28% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecc
Q 028815 84 VTEHELRAYDGSDPNKPLLMAIKGQIYDVS 113 (203)
Q Consensus 84 fT~eELa~ydG~~~~~piylAI~G~VYDVT 113 (203)
.|..+|.+.-+.+ .+.|-+|+||.|-.=+
T Consensus 16 ~tl~~ll~~l~~~-~~~vaVavN~~iv~r~ 44 (66)
T PRK08053 16 QTVHELLEQLNQL-QPGAALAINQQIIPRE 44 (66)
T ss_pred CCHHHHHHHcCCC-CCcEEEEECCEEeChH
Confidence 6899998877766 3569999999996543
No 35
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.97 E-value=94 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCce
Q 028815 150 NIEGLSDSELEVLQDWEYKFMEKYVK 175 (203)
Q Consensus 150 dl~~L~~~el~~L~~W~~~F~~KYp~ 175 (203)
.+..+++++...|.+|-..|++||-+
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGf 109 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKFGR 109 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999998643
No 36
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=22.55 E-value=97 Score=25.58 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCc
Q 028815 150 NIEGLSDSELEVLQDWEYKFMEKYV 174 (203)
Q Consensus 150 dl~~L~~~el~~L~~W~~~F~~KYp 174 (203)
.+..+++++.+.|.+|-..|++||-
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFG 108 (157)
T TIGR03164 84 GLDQLSQEEFARFTRLNNAYRARFG 108 (157)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3678999999999999999999863
No 37
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.59 E-value=1.5e+02 Score=20.19 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEe
Q 028815 83 DVTEHELRAYDGSDPNKPLLMAIKGQIYD 111 (203)
Q Consensus 83 ~fT~eELa~ydG~~~~~piylAI~G~VYD 111 (203)
..|..+|.+.-+-++ +.+-|++||++-.
T Consensus 13 ~~tv~~ll~~l~~~~-~~v~v~vN~~iv~ 40 (64)
T TIGR01683 13 GLTLAALLESLGLDP-RRVAVAVNGEIVP 40 (64)
T ss_pred CCcHHHHHHHcCCCC-CeEEEEECCEEcC
Confidence 368999988888774 6799999999964
No 38
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=21.40 E-value=54 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=11.5
Q ss_pred HHHHHHHhhcCcee
Q 028815 163 QDWEYKFMEKYVKV 176 (203)
Q Consensus 163 ~~W~~~F~~KYp~V 176 (203)
..|...|+++|+++
T Consensus 50 ~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 50 NGWLTRFKKRHNIV 63 (66)
T ss_pred HHHHHHHHHHcCCc
Confidence 47999999998864
No 39
>PRK11430 putative CoA-transferase; Provisional
Probab=20.31 E-value=1.2e+02 Score=28.22 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=31.4
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhH
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASR 135 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSr 135 (203)
+...-++.++|++-|-. =||++|.| ||..|+|....|.|..-
T Consensus 106 ~~rlGl~y~~L~~~nP~----LI~~sisg-----------fG~~GP~~~~pg~D~~~ 147 (381)
T PRK11430 106 MEKLGFSWETLQEINPR----LIYASSSG-----------FGHTGPLKDAPAYDTII 147 (381)
T ss_pred HHHcCCCHHHHHHHCCC----ceEEeeee-----------CCCCCCCCCCCCchHHH
Confidence 33345788889886433 48888765 79999999999999763
No 40
>PF13068 DUF3932: Protein of unknown function (DUF3932)
Probab=20.18 E-value=1.5e+02 Score=22.16 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhCCCh
Q 028815 5 YAAVMDTITTYTGLSP 20 (203)
Q Consensus 5 ~~~~~~~~~~~tglsp 20 (203)
|.+++|.|..||..--
T Consensus 32 wttlkeliheytt~ht 47 (81)
T PF13068_consen 32 WTTLKELIHEYTTSHT 47 (81)
T ss_pred hhHHHHHHHHHhcccc
Confidence 9999999999998654
Done!