Query 028815
Match_columns 203
No_of_seqs 224 out of 815
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 100.0 1.5E-37 5.2E-42 238.5 10.3 100 82-181 3-102 (102)
2 1x3x_A Cytochrome B5; hemoprot 99.4 1.7E-13 5.7E-18 100.3 4.4 54 82-139 4-60 (82)
3 1cyo_A Cytochrome B5; electron 99.4 1.4E-13 4.8E-18 103.2 3.4 54 82-139 5-60 (93)
4 2ibj_A Cytochrome B5, CYTB5; F 99.4 2E-13 6.9E-18 100.9 3.8 56 81-140 6-63 (88)
5 1cxy_A Cytochrome B5; helix, b 99.4 3.8E-13 1.3E-17 100.0 5.3 55 82-140 8-64 (90)
6 3ner_A Cytochrome B5 type B; h 99.4 3.9E-13 1.3E-17 100.8 4.4 54 82-139 10-65 (92)
7 3lf5_A Cytochrome B5 reductase 99.4 2.2E-13 7.4E-18 101.4 2.9 56 81-140 5-62 (88)
8 1hko_A Cytochrome B5; electron 99.3 7E-13 2.4E-17 101.6 3.1 54 82-139 9-64 (104)
9 2keo_A Probable E3 ubiquitin-p 99.3 8.8E-13 3E-17 102.6 1.9 55 81-139 23-79 (112)
10 1mj4_A Sulfite oxidase; cytoch 99.1 1.2E-11 4E-16 90.6 2.1 54 82-139 5-60 (82)
11 1kbi_A Cytochrome B2, L-LCR; f 98.9 2.1E-09 7.2E-14 101.0 7.9 55 82-140 9-65 (511)
12 1sox_A Sulfite oxidase; oxidor 98.4 1.3E-07 4.5E-12 88.3 4.0 54 82-139 5-60 (466)
13 2g04_A Probable fatty-acid-COA 31.1 38 0.0013 30.0 3.8 42 80-136 92-133 (359)
14 2yim_A Probable alpha-methylac 31.0 39 0.0013 30.0 3.8 40 82-136 92-131 (360)
15 1jdm_A Sarcolipin; helix, memb 28.3 51 0.0017 19.9 2.7 18 22-39 11-28 (31)
16 1q7e_A Hypothetical protein YF 25.6 54 0.0018 29.9 3.8 43 79-136 104-146 (428)
17 4ed9_A CAIB/BAIF family protei 23.1 81 0.0028 28.2 4.4 43 79-136 110-152 (385)
18 1hji_B NUN-protein; bacterioph 22.4 93 0.0032 17.8 3.0 19 152-170 2-20 (26)
19 3ubm_A COAT2, formyl-COA:oxala 22.1 68 0.0023 29.4 3.8 42 79-135 128-169 (456)
20 1tyg_B YJBS; alpha beta barrel 21.8 87 0.003 22.4 3.6 30 84-114 37-66 (87)
21 1fjk_A Cardiac phospholamban; 21.6 75 0.0026 21.0 2.8 17 22-38 34-50 (52)
22 2kl0_A Putative thiamin biosyn 21.2 79 0.0027 21.6 3.1 30 83-113 14-43 (73)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=100.00 E-value=1.5e-37 Score=238.54 Aligned_cols=100 Identities=48% Similarity=0.905 Sum_probs=96.1
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhhCCCCCCCCCCCCCCCHHHHHH
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEV 161 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sf~~e~l~~dl~~L~~~el~~ 161 (203)
+.||.+||++|||.+++++|||||+|+|||||+++.||||||+|..|||||||++|++++|+++++++|+++|++.|++.
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~ 82 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINT 82 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHH
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHHH
Confidence 56999999999999867799999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCceeEEEec
Q 028815 162 LQDWEYKFMEKYVKVGQIVS 181 (203)
Q Consensus 162 L~~W~~~F~~KYp~VG~L~~ 181 (203)
|++|+++|++||++||+|+.
T Consensus 83 l~~W~~~f~~kY~~VG~l~~ 102 (102)
T 1j03_A 83 LNDWETKFEAKYPVVGRVVS 102 (102)
T ss_dssp HHHHHHHHHTTSCEEECCCC
T ss_pred HHHHHHHHhccCCeeeEEeC
Confidence 99999999999999999973
No 2
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.40 E-value=1.7e-13 Score=100.28 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCC-cccccccCChhHH--Hhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGG-PYAMFAGRDASRA--LAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG-~Y~~fAGrDaSra--la~ 139 (203)
+.||.+||++||+.+ .+||+|+|+|||||.... ++||| .+..+||+|||++ |..
T Consensus 4 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~i~~~aG~D~T~~~~F~~ 60 (82)
T 1x3x_A 4 KKYTKEEVAKHNTQN---DLWIIYDGEVHDMTSFYK-EHPGGKVILNKAGQDATSVLKTLA 60 (82)
T ss_dssp CEECHHHHHTCEETT---EEEEEETTEEEECGGGGG-GCTTGGGGGGGTTSBCHHHHHHSH
T ss_pred CccCHHHHHhhCCCC---CEEEEECCEEEECCcchh-hCcChhhhhhhCCCCCchhhhhhc
Confidence 469999999999987 499999999999998764 79999 4558999999999 654
No 3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.38 E-value=1.4e-13 Score=103.17 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=47.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
+.||.+||++||+.+ +|||+|+|+|||||.... +||||. ...+||+|||++|..
T Consensus 5 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 60 (93)
T 1cyo_A 5 KYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 60 (93)
T ss_dssp CEECHHHHTTCEETT---EEEEEETTEEEECTTTTT-TCTTCSHHHHHHTTSBCHHHHHH
T ss_pred CccCHHHHHhhCCCC---CEEEEECCEEEECCCcch-hCcChHHHHHHhcCccchHHHHH
Confidence 569999999999876 599999999999998764 799998 457899999999985
No 4
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.38 E-value=2e-13 Score=100.92 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=48.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhh
Q 028815 81 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALM 140 (203)
Q Consensus 81 ~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~ 140 (203)
.+.||.+||++||+.+ +|||+|+|+|||||.... ++|||.. ..+||+|||++|...
T Consensus 6 ~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~~ 63 (88)
T 2ibj_A 6 VKYFTRAEVAKNNTKD---KNWFIIHNNVYDVTAFLN-EHPGGEEVLIEQAGKDATEHFEDV 63 (88)
T ss_dssp CCEECHHHHHTSEETT---EEEEEETTEEEECGGGTT-TCTTCSHHHHTTTTEECHHHHHHH
T ss_pred CCccCHHHHHHhCCCC---CEEEEECCEEEECCcchh-hCcCHHHHHHHhCCCcchHHHHHc
Confidence 3569999999999865 599999999999998754 7999984 579999999999853
No 5
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.38 E-value=3.8e-13 Score=100.04 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=48.6
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 140 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 140 (203)
+.||.+||++|++.+ +|||+|+|+|||||.... ++|||. ...+||||||++|...
T Consensus 8 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~~ 64 (90)
T 1cxy_A 8 PVFTLEQVAEHHSPD---DCWMAIHGKVYDLTPYVP-NHPGPAGMMLVWCGQESTEAWETK 64 (90)
T ss_dssp CBCCHHHHTTCEETT---EEEEEETTEEEECTTTGG-GCCSSTTTTGGGTTSBCHHHHHHT
T ss_pred CCcCHHHHHHhcCCC---CEEEEECCEEEECccchh-hCcChHHHHHHHCCcchhHHHhhc
Confidence 469999999999976 599999999999998754 799997 5689999999999854
No 6
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.36 E-value=3.9e-13 Score=100.80 Aligned_cols=54 Identities=30% Similarity=0.363 Sum_probs=48.0
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
+.||.+||++||+.+ +|||+|+|+|||||.... ++|||. ...+||+|||++|..
T Consensus 10 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~l~~~aG~DaT~~F~~ 65 (92)
T 3ner_A 10 TYYRLEEVAKRNSLK---ELWLVIHGRVYDVTRFLN-EHPGGEEVLLEQAGVDASESFED 65 (92)
T ss_dssp CEECHHHHTTCEETT---EEEEEETTEEEECGGGTT-TCTTCSHHHHTTTTSBCHHHHHH
T ss_pred CeeCHHHHHhhCCCC---CEEEEECCEEEEcccccc-cCCCHHHHHHHhcCCcchHHHHH
Confidence 569999999999976 599999999999998753 799997 458999999999985
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=101.43 Aligned_cols=56 Identities=34% Similarity=0.519 Sum_probs=48.9
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhh
Q 028815 81 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 140 (203)
Q Consensus 81 ~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 140 (203)
++.||.+||++||+.+ +|||+|+|+|||||.... ++|||. ...+||+|||++|...
T Consensus 5 l~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~l~~~aG~DaT~~F~~~ 62 (88)
T 3lf5_A 5 LIEVTEEELKKHNKKD---DCWICIRGFVYNVSPYME-YHPGGEDELMRAAGSDGTELFDQV 62 (88)
T ss_dssp SEEECHHHHHHCEETT---EEEEEETTEEEECGGGTT-TCTTCHHHHHTTTTEECHHHHHHH
T ss_pred CCEeCHHHHHhhCCCC---CEEEEECCEEEECccchh-hCcChhhhhhhcCCCcchHHHHHH
Confidence 3569999999999986 599999999999999764 699997 5789999999999753
No 8
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.30 E-value=7e-13 Score=101.58 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=47.7
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 139 (203)
+.||.+||++||+.+ +|||+|+|+|||||.... +||||.. ..+||+|||++|..
T Consensus 9 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aGkDaT~~F~~ 64 (104)
T 1hko_A 9 KYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 64 (104)
T ss_dssp EEECHHHHHHCBSSS---SBEEEETTEEEEHHHHSS-SSSSCSHHHHTTCSEECHHHHTT
T ss_pred CccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCcChHHHHHHhcCccchHHHHH
Confidence 569999999999976 499999999999998764 7999984 57999999999975
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.27 E-value=8.8e-13 Score=102.56 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=48.5
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 81 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 81 ~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
.+.||.+||++||+.+ +|||+|+|+|||||.... ++|||. ...+||||||++|..
T Consensus 23 ~~~~t~~Ev~~h~~~~---d~wvvi~G~VYDVT~fl~-~HPGG~~~l~~~aGkDaT~~F~~ 79 (112)
T 2keo_A 23 VTLVRIADLENHNNDG---GFWTVIDGKVYDIKDFQT-QSLTENSILAQFAGEDPVVALEA 79 (112)
T ss_dssp CCEECHHHHHHHHHHT---CCEEEETTEEEEHHHHHH-HHTSTTSTTGGGTTSCHHHHHHH
T ss_pred CCccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCCCchhhhhhhCCccchHHHhH
Confidence 4579999999999976 499999999999998754 699997 568999999999986
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.13 E-value=1.2e-11 Score=90.55 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=43.6
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 139 (203)
+.||.+||++||+.+ + +|||+|+|+|||||.... ++|||.. -.+||+|+ .+|..
T Consensus 5 ~~~t~~ev~~h~~~~-~-~~wv~i~g~VYDvt~f~~-~HPGG~~~il~~aG~Dt-~~f~~ 60 (82)
T 1mj4_A 5 HIYTKEEVSSHTSPE-T-GIWVTLGSEVFDVTEFVD-LHPGGPSKLMLAAGGPL-EPFWA 60 (82)
T ss_dssp CBCCCC-CTTCEETT-T-EEEEEETTEEEECTTTGG-GSTTCHHHHHTTTTSBS-HHHHT
T ss_pred CccCHHHHHHhcCCC-C-CeEEEECCEEEEchHHHH-hCCCHhHHHHHHcCCCh-HHHHh
Confidence 469999999999987 2 699999999999998754 7999953 36899995 56653
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=98.90 E-value=2.1e-09 Score=101.03 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=48.3
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALM 140 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~ 140 (203)
+.||.+||++||+.+ +|||+|+|+|||||.... +||||.. ..+||||||..|...
T Consensus 9 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~f~~-~HPGG~~~i~~~aG~DaT~~f~~~ 65 (511)
T 1kbi_A 9 QKISPAEVAKHNKPD---DCWVVINGYVYDLTRFLP-NHPGGQDVIKFNAGKDVTAIFEPL 65 (511)
T ss_dssp CCBCTTHHHHCEETT---EEEEEETTEEEECTTTGG-GCTTCHHHHHTTTTSBCHHHHGGG
T ss_pred CccCHHHHHHhCCCC---CEEEEECCEEEECCcchh-hCcChHHHHHHHcCcchhhhhhhc
Confidence 569999999999986 499999999999998764 7999974 479999999999754
No 12
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=98.40 E-value=1.3e-07 Score=88.30 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=45.5
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 139 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 139 (203)
+.||.+|+++||..++ .|||+|+|+|||||.... .||||. ...+||+| |.+|..
T Consensus 5 ~~~t~~Ev~~H~~~~d--~~Wvii~g~VYDvT~fl~-~HPGG~~~il~~aG~D-T~~f~~ 60 (466)
T 1sox_A 5 PEYTREEVGRHRSPEE--RVWVTHGTDVFDVTDFVE-LHPGGPDKILLAAGGA-LEPFWA 60 (466)
T ss_dssp CEECHHHHTTCEETTT--EEEEEETTEEEECTTTTT-TSTTCHHHHGGGTTSB-SHHHHH
T ss_pred CeeCHHHHHHhcCCCC--ceEEEECCEEEechHhHh-hCcCCcccchhhcCCc-cccccc
Confidence 5699999999998762 499999999999998753 599993 56789999 888864
No 13
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=31.06 E-value=38 Score=30.01 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=32.7
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 028815 80 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 136 (203)
Q Consensus 80 ~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 136 (203)
...-+..++|++-|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 92 ~rlGl~ye~L~~~nP~----LIy~sisG-----------fG~~GP~a~~pg~D~~~q 133 (359)
T 2g04_A 92 ERLGIGPDDCASVNPR----LIFARITG-----------WGQDGPLASTAGHDINYL 133 (359)
T ss_dssp HHSSCSHHHHHHHCTT----CEEEEEES-----------SCSSSSGGGSCCCHHHHH
T ss_pred HHhCCCHHHHHHhCCC----eEEEEEec-----------CCCCCCCcCCCCchHHHH
Confidence 3345889999986443 48998876 799999999999997643
No 14
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=31.02 E-value=39 Score=30.02 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 028815 82 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 136 (203)
Q Consensus 82 ~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 136 (203)
.-+..++|++-|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 92 lGl~ye~L~~~nP~----LIy~sisG-----------fG~~GP~~~~pg~D~~~q 131 (360)
T 2yim_A 92 LGLGPEECAKVNDR----LIYARMTG-----------WGQTGPRSQQAGHDINYI 131 (360)
T ss_dssp HTCSHHHHHHHCTT----CEEEEEES-----------SCSSSTTTTSCCCHHHHH
T ss_pred cCCCHHHHHHhCCC----eEEEEEec-----------CCCCCCCCCCCCcHHHHH
Confidence 34889999887543 48998876 799999999999997654
No 15
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.34 E-value=51 Score=19.85 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 028815 22 AFFTILALMCVVYKTVCS 39 (203)
Q Consensus 22 ~~~t~~~~~~~~y~~~~~ 39 (203)
+|..++++.+++|.++++
T Consensus 11 NFt~vLI~vlLi~llVrs 28 (31)
T 1jdm_A 11 NFTIVLITVILMWLLVRS 28 (31)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555577777888888875
No 16
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structu initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=25.59 E-value=54 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=31.5
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 136 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 136 (203)
+...-+..++|++-|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 104 ~~rlGL~ye~L~~~NP~----LIy~sisG-----------fG~~GP~a~~pg~D~~~q 146 (428)
T 1q7e_A 104 IDHMGFTWEHIQEINPR----LIFGSIKG-----------FDECSPYVNVKAYENVAQ 146 (428)
T ss_dssp -----CCHHHHHHHCTT----CEEEEEES-----------SCTTSTTTTSCCCHHHHH
T ss_pred HhhcCCCHHHHHHhCCC----eEEEEEee-----------CCCCCCCCCCCCcHHHHH
Confidence 33345899999987543 48998876 799999999999998653
No 17
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=23.11 E-value=81 Score=28.18 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=33.8
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 136 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 136 (203)
+...-+..++|++-|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 110 ~~rlGl~ye~L~~~nP~----LIy~sisG-----------fG~~GP~a~~~g~D~~~q 152 (385)
T 4ed9_A 110 LDKYGLDYESLKAINPQ----LIYCSITG-----------FGHTGPYAERAGYDFMIQ 152 (385)
T ss_dssp TGGGTCSHHHHHHHCTT----CEEEEEES-----------SCSSSTTTTSCCCHHHHH
T ss_pred HHHhCCCHHHHHHhCCC----eEEEEEEe-----------CCCCCCCCCCCCcHHHHH
Confidence 44445899999997543 38998866 899999999999998753
No 18
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=22.39 E-value=93 Score=17.79 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 028815 152 EGLSDSELEVLQDWEYKFM 170 (203)
Q Consensus 152 ~~L~~~el~~L~~W~~~F~ 170 (203)
++|+..+...+..|+.+..
T Consensus 2 rgltsrdrrriarwekria 20 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIA 20 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 5789999999999998753
No 19
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A {Acetobacter aceti}
Probab=22.14 E-value=68 Score=29.43 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=33.1
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhH
Q 028815 79 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASR 135 (203)
Q Consensus 79 ~~~~~fT~eELa~ydG~~~~~piylAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSr 135 (203)
+...-+..++|++-|-. =||++|.| ||..|+|...+|.|..-
T Consensus 128 ~erlGL~ye~L~~~NP~----LIy~sisG-----------fG~~GP~a~rpg~D~~~ 169 (456)
T 3ubm_A 128 MERMGFTWEYLQQLNPR----LIYGTVKG-----------FGENSPWAGVSAYENVA 169 (456)
T ss_dssp HHHTTCCHHHHHHHCTT----CEEEEEES-----------SCTTCTTTTSCCCHHHH
T ss_pred HHHhCCCHHHHHHhCCC----cEEEEEEe-----------cCCCCCCCCCCCcHHHH
Confidence 33345899999987543 39998865 89999999999999874
No 20
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.75 E-value=87 Score=22.37 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeccc
Q 028815 84 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 114 (203)
Q Consensus 84 fT~eELa~ydG~~~~~piylAI~G~VYDVT~ 114 (203)
.|..+|.+.-+.+ .+.+.|||||.|-+-+.
T Consensus 37 ~Tv~dLL~~L~~~-~~~vaVavNg~iV~~~~ 66 (87)
T 1tyg_B 37 GTIQDLLASYQLE-NKIVIVERNKEIIGKER 66 (87)
T ss_dssp CBHHHHHHHTTCT-TSCCEEEETTEEECGGG
T ss_pred CcHHHHHHHhCCC-CCCEEEEECCEECChhh
Confidence 6999998888876 35688999999966543
No 21
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.61 E-value=75 Score=21.01 Aligned_cols=17 Identities=24% Similarity=0.379 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028815 22 AFFTILALMCVVYKTVC 38 (203)
Q Consensus 22 ~~~t~~~~~~~~y~~~~ 38 (203)
+|.+++++++++|.++.
T Consensus 34 nfclilicllli~iivm 50 (52)
T 1fjk_A 34 NFCLILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667888888888764
No 22
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=21.18 E-value=79 Score=21.60 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=24.1
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEecc
Q 028815 83 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVS 113 (203)
Q Consensus 83 ~fT~eELa~ydG~~~~~piylAI~G~VYDVT 113 (203)
..|..+|.+.-|-+ .+.+-+++||.|-.=+
T Consensus 14 ~~Tl~~LL~~l~~~-~~~vAV~vNg~iVpr~ 43 (73)
T 2kl0_A 14 SASVAALMTELDCT-GGHFAVALNYDVVPRG 43 (73)
T ss_dssp CSBHHHHHHHTTCC-SSSCEEEESSSEECHH
T ss_pred CCcHHHHHHHcCCC-CCcEEEEECCEECChH
Confidence 47999998888877 4578899999996544
Done!